Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	51598	702408	36	0.0146
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	708526	751595	13	0.4641
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	751981	1500664	177	0.0566
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	1617778	1662463	17	-1.0182
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	1677447	16889459	8545	0.0024
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	16889467	16987299	39	0.4985
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	17049632	17130726	50	-0.3077
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	17131088	20755790	2562	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	20756009	20756109	3	-1.0441
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	20756403	30154594	4855	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	30155144	30157198	2	-1.3228
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	30157239	34864261	2866	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	34875241	34875623	6	-0.7088
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	34875729	34876097	4	0.0857
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	34876414	34877078	10	-0.7142
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	34886855	72541086	23786	0.0036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	72541504	72583736	46	-1.4687
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	72584492	75823432	1930	0.0193
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	75827351	75827442	2	-2.811
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	75832097	103965310	18163	0.0064
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	103979561	104069745	25	-0.3948
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	104104926	105814899	919	0.0114
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	105820728	105823898	17	0.6493
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	105825578	110038470	2684	0.0142
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	110041045	110041701	3	0.9329
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	110044476	112491849	1958	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	112497488	112498913	25	0.4654
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	112507479	147173241	6371	0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	147173894	147509287	124	-0.6646
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	147509349	147788470	55	-0.2118
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	147811996	147911593	9	0.9502
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	147911657	150822330	1484	0.0093
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	150822391	150852862	30	-1.3685
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	150852902	151028547	176	-0.0086
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	151028563	151035324	36	0.8159
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	151040529	159775499	5278	0.001
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	159780383	159905137	47	-0.49
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	159914861	167483561	6017	0.0049
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	167500598	167508390	7	0.9122
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	167509025	192714857	16744	0.0063
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	192718034	192721641	2	2.1454
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	192723639	217466417	16891	0.0073
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	217469050	217469388	3	-1.4645
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	217471689	218828230	941	-0.0163
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	218829147	218829533	2	-1.393
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	218832502	227877792	5604	0.0043
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	227883479	227886819	3	-2.6731
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	227887079	236573289	6624	0.0053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	236575612	236579237	3	-2.2221
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	236581043	246863836	7294	0.0091
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	246875180	246902944	13	-0.4739
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	246911445	247191011	131	0.0434
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	2784	13113526	10011	0.0135
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	13117593	13202361	47	0.5962
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	13202396	34552819	14062	0.0084
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	34554898	34590561	45	0.6142
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	34590667	35829477	878	0.0232
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	35831294	35841420	6	-1.5502
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	35841451	49391173	9882	0.0058
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	49391299	49394694	3	-1.3103
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	49398545	52607972	2280	0.0227
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	52607984	52635046	39	-2.4637
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	52641453	76697974	15561	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	76698681	76698934	5	-3.5615
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	76701094	77079438	292	0.0184
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	77079489	77089031	21	-1.29
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	77094321	79182654	1335	0.0085
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	79184286	79196319	8	0.6764
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	79197326	129354948	25925	0.0088
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	129354972	129356785	14	-0.8726
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	129356799	130071976	573	-0.0031
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	130072400	130072997	3	-1.3757
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	130075401	146580899	9904	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	146580913	146583404	22	-1.8965
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	146594276	242738129	59133	0.0046
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	35345	10293113	8748	0.0212
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	10294540	10300367	3	-1.3037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	10300750	100346758	55050	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	100350927	100435133	73	0.2994
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	100436451	131245549	18741	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	131246388	131290966	55	0.5037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	131291245	163990962	20280	0.0063
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	163995351	164004317	11	-0.6298
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	164007552	164023184	11	0.3834
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	164028410	164098609	42	-0.3792
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	164106536	196767187	20704	0.01
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	196868323	196932593	28	-0.7553
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	196941179	199380515	1193	0.0173
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	2281	9819488	5804	0.0056
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	9823258	9840347	28	3.5391
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	9840596	9844366	8	1.0429
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	9845240	9999813	171	-0.0562
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	10001452	10009766	16	-2.6294
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	10011816	34455449	16802	0.0023
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	34462895	34501120	38	-2.4193
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	34506267	44886613	6772	0.0071
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	44887324	44887622	2	-2.0176
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	44889833	64390176	9844	0.0118
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	64390200	64390818	6	1.1429
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	64390853	68967186	2862	0.0145
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	68970733	68970737	3	-1.8488
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	68977394	69027207	9	0.0242
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	69043083	69211554	72	0.5443
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	69219747	70172627	338	0.0511
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	70172636	70263245	40	0.3069
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	70263941	78012236	4632	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	78012264	78012396	3	-1.176
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	78012399	115393149	22725	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	115394772	115401624	23	-1.6104
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	115403678	171856665	34247	0.0118
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	171861074	171862920	2	-1.6779
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	171863223	172605921	483	0.0251
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	172611459	172614299	11	1.0102
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	172614351	172625396	11	-0.3237
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	172625672	191171930	12516	0.0174
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	191188957	191261904	9	-0.5273
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	68532	46287063	30803	0.0103
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	46306765	46309259	8	-2.3782
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	46313969	57357403	5083	0.008
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	57361784	57368673	28	-0.544
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	57368712	103879120	26867	0.0069
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	103888272	103888503	4	-1.0538
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	103888948	110459840	4179	0.0117
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	110462160	110465393	3	-1.7813
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	110465537	137833019	17990	0.0049
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	137835860	137844693	19	-0.8478
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	137844856	150182398	7631	3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	150185693	150198797	8	-0.8652
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	150203580	150916920	527	-0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	150918700	151007156	85	0.5752
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	151007371	164766196	9211	-0.0036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	164768834	164779037	4	-1.0521
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	164779355	180072591	10329	0.0064
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	180072721	180072732	2	-1.5353
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	180073225	180722926	333	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	94661	230695	116	-0.0169
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	231393	329109	89	0.2477
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	329521	10214453	7827	9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	10214605	10236076	11	-0.4832
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	10236257	21916459	8664	-2e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	21920221	21922731	3	-1.2818
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	21922770	29958253	5056	0.0099
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	29958345	30009555	19	-1.038
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	30016448	31385665	652	-0.011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	31388802	31404430	12	-1.7625
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	31417903	32562501	511	-0.0049
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	32564661	32609277	14	1.9271
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	32616454	32733866	47	0.2765
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	32733915	34042653	804	-0.0031
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	34045414	34045977	9	0.354
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	34046721	34050683	7	-0.9662
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	34052564	65761796	17528	0.0074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	65763294	65793658	13	-0.494
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	65794016	66450811	450	0.0385
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	66456203	66460573	24	-0.6317
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	66463848	72500090	4046	0.013
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	72500582	72500596	2	-1.376
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	72501745	77071668	2870	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	77073620	77073646	3	1.0132
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	77073713	79019608	1296	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	79025784	79091893	111	-0.6487
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	79091904	134307961	34620	0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	134310764	134311325	2	-2.0841
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	134313765	170892930	25146	0.0078
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	52911	138438	3	-0.056
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	138457	160586	27	0.593
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	160848	29637243	21450	0.017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	29640265	29644799	5	-1.0348
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	29652873	95323291	38052	0.0097
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	95325994	95326433	2	-2.4157
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	95327448	141409593	27876	0.0073
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	141416112	141438576	42	-0.5111
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	141441750	142154515	450	0.0586
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	142156294	142165422	25	0.7665
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	142165554	152320681	6072	0.0128
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	152320886	152321009	3	-1.2415
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	152322133	157810356	3866	0.0126
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	157821349	157824926	2	1.72
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	157829747	158819765	639	0.0281
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	8	21254	112363642	73010	0.0083
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	8	112363846	112364421	5	-1.283
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	8	112364436	146268959	22933	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	36587	592903	509	0.0382
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	596699	596961	4	-2.5792
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	597307	12544856	11204	0.0249
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	12546594	12552294	3	-1.2818
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	12555520	23351805	8736	0.0108
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	23353115	23370445	11	0.6993
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	23370834	78959214	17936	0.0089
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	78960218	78967224	29	0.6534
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	78975948	93442027	10386	9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	93442089	93443366	16	-0.6808
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	93443531	133977466	27945	0.0036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	133980402	133980420	2	-1.7149
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	133981534	140211215	3135	0.0138
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	62759	17132433	14374	0.0068
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	17135003	17143465	4	-1.1569
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	17144104	17967560	506	-0.0031
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	17978214	17989863	2	-1.8232
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	18011822	51492405	18830	0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	51500366	51561926	5	-1.9203
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	51573774	74116288	15882	0.0087
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	74121470	74131056	4	-0.9267
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	74137295	77922857	1966	0.0083
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	77927067	77927616	2	2.1383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	77931273	82868139	3343	0.0117
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	82871310	82879763	10	-1.1758
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	82884449	90928653	5710	0.0016
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	90932947	90938010	11	-0.9174
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	90938070	135356694	30451	0.0034
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	188510	5739971	3302	0.0133
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	5740258	5768936	38	0.4815
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	5772762	22300731	12378	7e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	22308044	22308181	2	-2.1815
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	22311821	22426056	87	-0.0406
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	22428177	22429334	4	-1.3922
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	22429718	55119916	18856	0.0121
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	55130608	55209585	59	0.4523
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	55210152	69296764	7295	0.0092
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	69301995	69302357	2	-1.491
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	69303186	124697053	37680	0.0069
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	124697491	124697581	3	-1.3127
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	124698166	133908599	7009	-6e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	133911174	133911519	4	-1.188
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	133914862	134449982	440	0.0383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	20703	739524	421	0.0163
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	739539	744290	15	-0.7351
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	745615	4258793	2458	0.0175
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	4259416	4259467	4	-0.9826
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	4259610	9542560	3312	0.0103
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	9542658	9627923	23	0.3724
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	9628180	11111991	1040	0.0042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	11112094	11132799	11	-1.3979
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	11143141	27539174	11392	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	27539247	27542629	25	-0.8221
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	27548428	33192693	4176	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	33192787	33199654	27	-0.5921
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	33199726	36273993	842	0.0478
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	36298834	36300285	2	1.6229
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	36320625	98315945	38524	0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	98319424	98322865	31	-0.5672
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	98327224	132288262	22759	0.0073
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	17924949	22527187	2893	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	22527210	22531515	13	0.4828
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	22536195	36969135	10654	0.0032
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	36970036	36982757	16	0.899
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	36986330	56656271	12538	0.0072
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	56656290	56676381	33	-0.6535
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	56687715	63122206	3803	0.0188
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	63122793	63134693	9	-0.941
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	63137564	71374989	5186	0.0156
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	71375556	71378557	4	-2.7319
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	71378606	114126499	29146	0.003
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	18072124	19323632	106	-0.0105
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	19329599	19489991	81	-0.3476
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	19490079	23500989	2740	0.0383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	23514669	23554299	25	-0.796
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	23557983	40678108	10885	0.0073
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	40680246	40727099	15	0.5261
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	40739852	45660660	2867	0.0277
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	45661808	45661927	2	-1.8895
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	45662650	105867742	38575	0.001
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	105872400	105892781	8	-1.2138
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	105896961	106356482	303	0.0528
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	18276341	18466953	48	0.1387
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	18476969	20088838	374	0.8284
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	20224763	21806337	795	0.0087
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	21809024	21809440	2	-2.1307
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	21809664	22063128	146	0.0162
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	22065713	22202157	59	0.5753
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	22214855	28237336	3681	0.0189
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	28237661	28688170	105	-0.3138
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	28700879	30231347	1051	0.0212
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	30248179	30644704	64	-0.2415
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	30644774	30664276	4	-1.3062
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	30690275	99973205	45575	0.0023
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	99975987	100071796	66	0.6648
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	100075183	100286563	92	0.0579
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	777	31947984	20077	0.012
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	31948315	33588602	265	0.4105
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	33616936	54352715	6979	0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	54353890	54374147	18	-0.8482
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	54374206	68709061	8771	0.0054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	68709823	68770545	16	-0.6082
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	68792037	88815036	16388	0.0082
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	526	18299671	11446	0.006
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	18299674	18405946	27	-1.3746
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	18409922	36676540	9500	0.0124
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	36676552	36684057	23	1.3376
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	36686250	38782474	1109	-0.0048
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	38787791	38795447	4	-0.8108
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	38799230	41572099	1438	0.0101
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	41575332	42120174	132	-0.3908
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	42139835	78643088	21615	0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	1543	36512703	22839	0.0092
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	36512725	36519387	20	0.5421
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	36522022	61353956	17134	0.0044
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	61353975	61358237	19	0.8311
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	61358253	76116029	10802	0.0246
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	41910	20386147	8989	0.0012
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	20386516	20513074	73	-0.8835
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	20513302	40355614	7593	0.0042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	40355683	40355883	5	-1.0538
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	40357887	40541162	168	0.0551
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	40541333	40553688	22	-0.426
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	40558584	48389173	3923	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	48394873	48448077	22	-0.8074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	48458499	56834427	4171	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	56834742	56840009	9	0.6286
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	56846717	60973882	2530	0.0131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	60974181	60978105	5	-2.2891
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	60980753	63789666	1848	-0.0042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	9305	1508922	1204	0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	1508951	1538257	39	0.452
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	1538455	4084720	1781	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	4092682	4097119	4	-1.2873
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	4106400	28034214	17030	0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	28042184	28107514	18	-0.439
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	28111932	62426597	22417	-0.001
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	9758742	9851553	4	0.8382
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	9887812	9975295	32	0.3006
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	9975997	18977958	3675	0.0141
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	18979549	19002805	27	0.542
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	19003746	29197509	7848	0.0131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	29197818	29199538	7	-0.7884
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	29200022	36851182	5368	0.0039
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	36851999	36852228	2	-2.4665
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	36855048	42020443	4394	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	42022965	42023657	4	-1.0272
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	42023923	43792481	1282	-0.0111
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	43795301	43797240	2	-2.8301
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	43798095	46921385	1766	0.0079
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	14432528	14602695	24	-0.2599
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	14602976	22601745	4567	0.0269
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	22613016	22660269	27	-0.3551
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	22661967	22662933	3	-1.8967
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	22667307	22726814	22	0.6401
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	22731529	37693565	10868	0.009
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	37693630	37693946	5	-0.9231
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	37695304	37701367	11	-0.3196
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	37701375	37705253	7	-0.7113
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	37719574	41227226	1895	-0.0049
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	41229384	41285375	25	0.5294
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	41285732	46438591	3687	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	46439434	46440863	2	-1.4413
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	46442374	49581321	2416	0.0273
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	108477	19144683	11668	0.0079
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	19145238	19146023	3	-1.8937
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	19152099	24921149	3609	0.0115
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	24921295	24921532	2	-4.3765
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	24921928	64280934	19276	0.014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	64281916	64283744	2	-3.5646
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	64287487	69421394	2558	0.0021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	69421489	69421512	2	-4.0068
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	69423244	154835548	47422	0.0141
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	Y	2710438	57427647	8589	-0.951
