Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	61735	712545	36	0.0146
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	718663	761732	13	0.4641
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	762118	1510801	177	0.0566
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	1627918	1672603	17	-1.0182
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	1687587	17016872	8545	0.0024
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	17016880	17114712	39	0.4985
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	17177045	17258139	50	-0.3077
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	17258501	20883203	2561	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	20883422	20883522	3	-1.0441
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	20883816	30382007	4854	0.0016
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	30382557	30384611	2	-1.3228
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	30384652	35091674	2866	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	35102654	35103036	6	-0.7088
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	35103142	35103510	4	0.0857
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	35103827	35104491	10	-0.7142
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	35114268	72768498	23866	0.0038
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	72768916	72811148	46	-1.4687
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	72811904	76050844	1930	0.0193
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	76054763	76054854	2	-2.811
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	76059509	104163787	18154	0.0065
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	104178038	104268222	25	-0.3948
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	104303403	106013376	919	0.0114
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	106019205	106022375	17	0.6493
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	106024055	110236947	2684	0.0142
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	110239522	110240178	3	0.9329
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	110242953	112690326	1958	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	112695965	112697390	25	0.4654
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	112705956	148906617	6367	0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	148907270	149242663	124	-0.6646
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	149242725	149521846	55	-0.2118
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	149545372	149644969	9	0.9502
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	149645033	152555706	1485	0.0092
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	152555767	152586238	30	-1.3685
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	152586278	152761923	176	-0.0086
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	152761939	152768700	36	0.8159
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	152773905	161508875	5278	0.001
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	161517939	161638513	47	-0.49
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	161648237	169216937	6016	0.0048
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	169233974	169241766	7	0.9122
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	169242401	194448234	16744	0.0063
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	194451411	194455018	2	2.1454
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	194457016	219399794	16892	0.0073
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	219402427	219402765	3	-1.4645
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	219405066	220761607	941	-0.0163
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	220762524	220762910	2	-1.393
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	220765879	229811169	5603	0.0043
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	229816856	229820196	3	-2.6731
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	229820456	238506666	6623	0.0053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	238508989	238512614	3	-2.2221
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	238514420	248805339	7293	0.0091
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	248808557	248836321	13	-0.4739
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	1	248844822	249224388	131	0.0434
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	12784	13196075	10009	0.0135
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	13200142	13284910	47	0.5962
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	13284945	34699315	14062	0.0084
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	34701394	34737057	45	0.6142
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	34737163	35975973	878	0.0232
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	35977790	35987916	6	-1.5502
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	35987947	49537669	9880	0.0058
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	49537795	49541190	3	-1.3103
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	49545041	52754468	2281	0.0227
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	52754480	52781542	39	-2.4637
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	52787949	76844466	15558	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	76845173	76845426	5	-3.5615
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	76847586	77225930	292	0.0184
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	77225981	77235523	21	-1.29
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	77240813	79329146	1335	0.0085
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	79330778	79342811	8	0.6764
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	79343818	129638478	25919	0.0088
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	129638502	129640315	14	-0.8726
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	129640329	130355506	572	-0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	130355930	130356527	3	-1.3757
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	130358931	146864429	9902	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	146864443	146866934	22	-1.8965
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	2	146877806	243089456	59136	0.0046
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	60345	10318113	8748	0.0212
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	10319540	10325367	3	-1.3037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	10325750	98864068	55044	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	98868237	98952443	73	0.2994
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	98953761	129762859	18741	0.0026
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	129763698	129808276	55	0.5037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	129808555	162508268	20279	0.0063
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	162512657	162521623	11	-0.6298
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	162524858	162540490	11	0.3834
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	162545716	162615915	42	-0.3792
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	162623842	195285898	20705	0.01
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	195383142	195446922	28	-0.7553
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	3	195455508	197896118	1193	0.0173
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	12281	10210390	5804	0.0056
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	10214160	10231249	28	3.5391
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	10231498	10235268	8	1.0429
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	10236142	10390715	171	-0.0562
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	10392354	10400668	16	-2.6294
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	10402718	34779054	16802	0.0023
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	34786500	34824725	38	-2.4193
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	34829872	45191856	6771	0.0071
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	45192567	45192865	2	-2.0176
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	45195076	64707581	9842	0.0118
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	64707605	64708223	6	1.1429
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	64708258	69244434	2855	0.0156
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	69255070	69284591	9	-0.4871
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	69288138	69288142	3	-1.8488
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	69294799	69344612	12	-0.0941
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	69360488	69528959	73	0.5435
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	69536788	70138038	334	0.0519
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	70138047	70228656	40	0.3069
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	70229352	77793212	4632	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	77793240	77793372	3	-1.176
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	77793375	115173700	22729	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	115175323	115182175	23	-1.6104
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	115184229	171620090	34251	0.0118
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	171624499	171626345	2	-1.6779
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	171626648	172369346	483	0.0251
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	172374884	172377724	11	1.0102
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	172377776	172388821	11	-0.3237
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	172389097	190934936	12515	0.0175
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	4	190951963	191027923	9	-0.5273
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	15532	46251306	30802	0.0103
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	46271008	46273502	8	-2.3782
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	46278212	57321646	5082	0.0081
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	57326027	57332916	28	-0.544
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	57332955	103851221	26869	0.0069
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	103860373	103860604	4	-1.0538
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	103861049	110431941	4180	0.0117
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	110434261	110437494	3	-1.7813
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	110437638	137805120	17988	0.0048
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	137807961	137816794	19	-0.8478
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	137816957	150202205	7634	3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	150205500	150218604	8	-0.8652
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	150223387	150936727	527	-0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	150938507	151026963	85	0.5752
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	151027178	164833618	9209	-0.0036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	164836256	164846459	4	-1.0521
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	164846777	180139985	10330	0.0064
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	180140115	180140126	2	-1.5353
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	5	180140619	180790320	333	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	149661	285695	116	-0.0169
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	286393	384109	89	0.2477
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	384521	10106467	7827	8e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	10106619	10128090	11	-0.4832
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	10128271	21808480	8663	-1e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	21812242	21814752	3	-1.2818
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	21814791	29850274	5056	0.0099
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	29850366	29901576	19	-1.038
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	29908469	31277686	652	-0.011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	31280823	31296451	12	-1.7625
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	31309924	32454523	511	-0.0049
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	32456683	32501299	14	1.9271
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	32508476	33934675	851	0.0124
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	33937436	33937999	9	0.354
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	33938743	33942705	7	-0.9662
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	33944586	65705075	17530	0.0074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	65706573	65736937	13	-0.494
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	65737295	66394090	450	0.0385
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	66399482	66403852	24	-0.6317
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	66407127	72443369	4046	0.0131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	72443861	72443875	2	-1.376
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	72445024	77014948	2869	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	77016900	77016926	3	1.0132
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	77016993	78962889	1296	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	78969065	79035174	111	-0.6487
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	79035185	134266268	34624	0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	134269071	134269632	2	-2.0841
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	6	134272072	171051005	25148	0.0078
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	43355	65503	28	0.5807
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	65765	29670718	21450	0.017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	29673740	29678274	5	-1.0348
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	29686348	95485355	38055	0.0097
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	95488058	95488497	2	-2.4157
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	95489512	141763124	27879	0.0073
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	141769643	141792107	42	-0.5111
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	141795281	142474939	450	0.0586
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	142476719	142485853	25	0.7665
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	142485985	152689748	6069	0.0126
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	152689953	152690076	3	-1.2415
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	152691200	158117595	3868	0.0127
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	158128588	158132165	2	1.72
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	7	158136986	159127004	639	0.0281
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	8	31254	112294466	73015	0.0083
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	8	112294670	112295245	5	-1.283
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	8	112295260	146298155	22935	0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	46587	602903	511	0.0389
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	606699	606961	4	-2.5792
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	607307	12554856	11204	0.0249
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	12556594	12562294	3	-1.2818
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	12565520	23361805	8737	0.0107
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	23363115	23380445	11	0.6993
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	23380834	79769394	17943	0.009
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	79770398	79777404	29	0.6534
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	79786128	94402206	10386	9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	94402268	94403545	16	-0.6808
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	94403710	134987645	27950	0.0036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	134990581	134990599	2	-1.7149
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	9	134991713	141091394	3135	0.0138
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	72759	17092427	14374	0.0068
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	17094997	17103459	4	-1.1569
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	17104098	17927554	506	-0.0031
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	17938208	17949857	2	-1.8232
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	17971816	51822399	18830	0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	51830360	51891920	5	-1.9203
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	51903768	74446282	15880	0.0088
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	74451464	74461050	4	-0.9267
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	74467289	78252851	1966	0.0083
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	78257061	78257610	2	2.1383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	78261267	82878159	3338	0.0119
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	82881330	82889783	10	-1.1758
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	82894469	90938673	5716	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	90942967	90948030	11	-0.9174
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	10	90948090	135506704	30449	0.0034
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	198510	5783395	3301	0.0133
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	5783682	5812360	38	0.4815
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	5816186	22344155	12377	7e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	22351468	22351605	2	-2.1815
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	22355245	22469480	87	-0.0406
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	22471601	22472758	4	-1.3922
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	22473142	55363340	18854	0.0121
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	55374032	55453009	59	0.4523
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	55453576	69587583	7295	0.0093
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	69592814	69593176	2	-1.491
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	69594005	125191843	37674	0.0069
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	125192281	125192371	3	-1.3127
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	125192956	134403389	7008	-5e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	134405964	134406309	4	-1.188
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	11	134409652	134944770	440	0.0383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	150442	869263	421	0.0163
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	869278	874029	15	-0.7351
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	875354	4388532	2458	0.0175
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	4389155	4389206	4	-0.9826
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	4389349	9651293	3311	0.0105
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	9651391	9736656	24	0.3477
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	9736913	11220724	1039	0.0042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	11220827	11241532	11	-1.3979
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	11251874	27647907	11390	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	27647980	27651362	25	-0.8221
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	27657161	33301426	4175	0.0058
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	33301520	33308387	27	-0.5921
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	33308459	37987726	842	0.0478
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	38012567	38014018	2	1.6229
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	38034358	99791814	38522	0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	99795293	99798734	31	-0.5672
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	12	99803093	133778189	22757	0.0073
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	19026949	23629187	2893	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	23629210	23633515	13	0.4828
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	23638195	38071135	10652	0.0032
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	38072036	38084757	16	0.899
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	38088330	57758270	12538	0.0072
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	57758289	57778380	33	-0.6535
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	57789714	64224205	3802	0.0188
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	64224792	64236692	9	-0.941
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	64239563	72476988	5186	0.0156
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	72477555	72480556	4	-2.7319
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	13	72480605	115108397	29145	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	19002124	20253792	106	-0.0105
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	20259759	20420151	81	-0.3476
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	20420239	24431149	2740	0.0383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	24444829	24484459	25	-0.796
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	24488143	41608358	10883	0.0072
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	41610496	41657349	15	0.5261
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	41670102	46590910	2867	0.0276
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	46592058	46592177	2	-1.8895
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	46592900	106796697	38574	0.001
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	106801355	106821736	8	-1.2138
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	14	106825916	107285437	303	0.0528
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	20016328	20206939	48	0.1387
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	20216955	22587474	374	0.8284
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	22673399	24255244	795	0.0087
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	24257931	24258347	2	-2.1307
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	24258571	24512035	146	0.0162
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	24514620	24651064	59	0.5753
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	24663762	30450044	3682	0.0189
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	30450369	30900878	105	-0.3138
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	30913587	32444055	1051	0.0212
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	32460887	32857412	64	-0.2415
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	32857482	32876984	4	-1.3062
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	32902983	102155682	45571	0.0023
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	102158464	102254273	66	0.6648
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	15	102257660	102469040	92	0.0579
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	60777	32040483	20075	0.0119
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	32040814	33681101	265	0.4105
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	33709435	55795214	6979	0.0051
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	55796389	55816646	18	-0.8482
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	55816705	70151560	8771	0.0054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	70152322	70213044	16	-0.6082
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	16	70234536	90287535	16309	0.0078
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	526	18358946	11447	0.006
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	18358949	18465221	27	-1.3746
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	18469197	39423014	9498	0.0124
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	39423026	39430531	23	1.3376
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	39432724	41426948	1109	-0.0048
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	41432265	41439921	4	-0.8108
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	41443704	44216322	1438	0.0101
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	44219555	44764994	132	-0.3908
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	17	44784652	81049726	21616	0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	11543	38258705	22838	0.0091
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	38258727	38265389	20	0.5421
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	38268024	63202976	17133	0.0044
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	63202995	63207257	18	0.85
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	18	63207273	78015057	10802	0.0246
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	90910	20594307	8988	0.0012
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	20594676	20721234	73	-0.8835
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	20721462	35663774	7593	0.0042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	35663843	35664043	5	-1.0538
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	35666047	35849322	168	0.0551
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	35849493	35861848	22	-0.426
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	35866744	43697333	3923	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	43703033	43756237	22	-0.8074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	43766659	52142615	4171	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	52142930	52148197	9	0.6286
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	52154905	56282070	2530	0.0131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	56282369	56286293	5	-2.2891
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	19	56288941	59097854	1848	-0.0042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	61305	1560922	1204	0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	1560951	1590257	39	0.452
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	1590455	4136720	1783	0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	4144682	4149119	4	-1.2873
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	4158400	29420553	17031	0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	29428523	29493853	18	-0.439
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	20	29498271	62956153	22417	-0.001
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	10736871	10829682	4	0.8382
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	10865941	10953424	32	0.3006
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	10954126	20056087	3675	0.0141
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	20057678	20080934	27	0.542
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	20081875	30275638	7848	0.0131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	30275947	30277667	7	-0.7884
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	30278151	37929312	5369	0.0039
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	37930129	37930358	2	-2.4665
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	37933178	43147374	4393	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	43149896	43150588	4	-1.0272
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	43150854	44968053	1282	-0.0111
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	44970873	44972812	2	-2.8301
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	21	44973667	48096957	1765	0.0079
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	16052528	16222695	24	-0.2599
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	16222976	24271745	4567	0.0269
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	24283016	24330269	27	-0.3551
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	24331967	24332933	3	-1.8967
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	24337307	24396814	22	0.6401
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	24401529	39363619	10867	0.009
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	39363684	39364000	5	-0.9231
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	39365358	39371421	11	-0.3196
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	39371429	39375307	7	-0.7113
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	39389628	42897282	1895	-0.0049
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	42899440	42955431	25	0.5294
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	42955788	48059927	3687	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	48060770	48062199	2	-1.4413
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	22	48063710	51234455	2417	0.0272
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	168477	19234762	11669	0.008
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	19235317	19236102	3	-1.8937
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	19242178	25011228	3610	0.0115
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	25011374	25011611	2	-4.3765
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	25012007	64364209	19281	0.0139
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	64365191	64367019	2	-3.5646
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	64370762	69504669	2559	0.0021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	69504764	69504787	2	-4.0068
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	X	69506519	155182354	47401	0.0149
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_A11_895730	Y	2650438	59018259	8634	-0.9512
