Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	1	3218610	247813706	128975	7e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	2	484222	242476062	131113	0.0016
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	3	2212571	197538677	106270	0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	4	1053934	188763651	102623	0.0013
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	5	914233	157133759	86260	5e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	5	157134588	157135846	2	-1.8633
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	5	157136314	177648443	12707	-0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	5	177649986	177650993	2	-1.6987
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	5	177704027	180360469	1405	-0.0102
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	6	1014281	170903919	96369	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	7	705284	25222138	13134	-4e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	7	25224221	25232119	8	-1.0688
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	7	25244419	63824984	20339	6e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	7	63825236	63829969	3	-1.7222
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	7	63830960	83547616	9224	0.0058
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	7	83551850	83551857	2	-3.2214
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	7	83552519	158385118	38528	0.0017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	8	617667	129458486	72026	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	8	129464632	129464930	3	-1.6224
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	8	129465115	145232496	9405	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	9	789932	140938752	67952	0.0014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	10	415240	19940844	13898	0.0045
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	10	19941008	19941027	2	-2.2075
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	10	19941451	135225087	66865	0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	11	456120	20730761	12899	-5e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	11	20735574	20736413	2	-1.9383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	11	20736800	134142530	64259	0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	12	889902	123956749	69521	6e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	12	123959259	124083898	47	0.5146
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	12	124094770	133161346	4268	0.004
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	13	19450806	114987458	56547	0.0024
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	14	20501368	100156771	46811	-8e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	14	100157791	100160380	2	-1.8918
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	14	100162377	105988038	2580	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	15	23687685	90325821	37424	-0.003
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	15	90326393	90329192	4	-1.4258
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	15	90329644	93058590	1933	-0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	15	93061300	93061551	2	-1.3115
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	15	93063745	101884307	5102	-0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	16	653459	89379936	40744	-0.0039
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	17	987221	80917016	36947	6e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	18	329586	77109240	42590	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	19	284018	9263536	2861	-9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	19	9263806	9264466	2	-2.0662
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	19	9266296	58878226	21060	-4e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	20	455764	62219837	37241	0.0011
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	21	15347621	42868131	18179	-0.0021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	21	42868195	42868213	2	-1.8972
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	21	42868337	43708490	592	-0.0121
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	21	43709367	43709682	2	-1.4606
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	21	43709700	47678774	1792	0.0018
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	22	17423930	49331012	16900	-0.0017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	3157107	10433428	1769	0.0143
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	10433550	10434215	2	-2.4463
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	10435519	11743438	738	-0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	11743554	11743806	2	-2.4717
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	11744714	12663446	806	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	12665121	12665363	2	-3.1787
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	12665971	17844328	2632	-0.0086
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	17844416	17845523	3	-2.21
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	17846752	22212700	1810	0.0012
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	22212765	22212996	2	-3.6399
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	22213994	128734133	44379	0.007
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	128735199	128736843	3	-3.204
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	128738126	128764606	20	0.0507
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	128766841	128767383	2	-3.4745
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_C11_895766	X	128767655	154905589	11366	0.0044
