Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	61735	1647890	233	0.0296
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	1650062	1672603	10	-0.6426
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	1687587	16149915	8171	0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	16153497	16153925	6	-2.0589
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	16154201	25453295	5651	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	25455525	25455535	2	-1.4976
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	25455892	72749848	28950	0.0037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	72750353	72809842	54	0.3966
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	72810938	104102788	20059	0.0093
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	104103057	104130168	19	0.5863
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	104132359	104221531	14	-0.0859
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	104221631	104259444	19	-0.5758
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	104260032	108766355	2901	0.0151
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	108769302	108817179	2	-2.6892
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	108828957	110232974	705	0.0267
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	110233037	110240178	16	-1.3393
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	110242953	111377568	844	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	111377570	111379573	14	-0.9471
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	111379750	111388226	22	-0.3286
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	111392067	152555706	9143	0.0126
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	152555767	152590494	35	-1.0837
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	152590565	152759678	170	0.0112
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	152761923	152768700	37	-1.4513
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	152773905	196812507	29633	0.0111
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	196812530	196815791	2	-2.7374
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	196816730	222366668	17438	0.0017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	222374834	222377004	2	1.459
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	222382134	248805339	18363	0.0048
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	248808864	248809109	2	-1.4547
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	1	248809369	249224388	141	0.1404
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	12784	4205687	2990	7e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	4213864	4224019	42	-0.6683
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	4230062	9177204	4009	0.0032
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	9185312	9185376	2	-1.8232
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	9188488	38954495	20306	0.0086
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	38955866	38972281	8	0.9317
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	38972826	52754468	9839	0.0095
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	52754480	52781397	34	0.6352
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	52781412	76842314	15558	0.0063
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	76844466	76845426	6	-0.9114
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	76847586	78702076	1221	0.0218
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	78707767	78708884	5	-0.8202
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	78712939	86937687	5146	0.002
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	86953070	86953854	2	1.8924
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	86970406	106880095	7730	0.0015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	106880713	106885357	11	-2.6025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	106887255	114362015	3844	0.0104
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	114362414	114380821	3	-1.1924
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	114383552	123881216	6026	0.0055
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	123883938	123891059	6	-0.9251
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	123892699	129638502	3578	0.0132
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	129638774	129640297	12	-0.9152
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	2	129640315	243089456	69621	0.0052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	60345	909038	706	-0.0065
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	909735	944436	23	-1.1193
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	947488	47478509	32828	0.0038
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	47491822	47492720	2	-2.9521
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	47497214	61190394	8457	0.0025
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	61205838	61241690	28	0.6086
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	61243611	68746164	5814	-0.0056
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	68746259	68747413	14	-1.3364
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	68748758	98945299	15963	0.0086
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	98945395	98949314	23	-0.6115
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	98949421	129763698	18745	4e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	129766586	129806236	51	-1.1792
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	129806924	189360754	37032	0.0121
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	189363678	189370988	12	-0.8528
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	189371014	192873704	2494	0.0048
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	192874747	192882903	21	-1.2373
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	192886435	195418263	1494	0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	195422289	195455508	22	0.5512
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	195455861	197838437	1170	0.0484
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	3	197838578	197896118	21	-0.4024
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	12281	3599450	1511	0.0135
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	3599869	3602184	2	-1.9259
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	3609390	9456977	3736	-0.0065
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	9461230	9479345	9	-0.8525
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	9486087	10210390	545	-0.0053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	10214160	10231249	28	2.2744
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	10231498	34778962	16991	0.0036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	34778975	34835562	51	0.6063
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	34838992	61327312	14676	0.0059
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	61329994	61331617	2	1.7161
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	61335564	63667834	1339	0.0195
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	63669936	63671662	8	-2.0155
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	63679630	69261064	3446	0.0153
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	69282205	69323519	10	0.4905
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	69325183	69372003	11	0.3312
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	69374941	69485979	64	-1.7374
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	69489335	70130909	333	0.0021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	70131346	70244081	58	-0.5327
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	70246921	77285833	4257	0.0136
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	77289786	77292366	5	-1.0527
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	77292801	115173700	23082	0.0043
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	115175323	115182175	23	-1.5009
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	115184229	161052774	27407	0.0098
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	161053591	161062985	17	-0.6324
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	161063094	161063535	3	-1.3932
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	161063558	161070789	19	-0.6596
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	161083870	161707716	449	0.0203
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	161712450	161867415	125	-0.9717
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	161868076	172369346	6713	0.0123
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	172374884	172377776	12	0.7874
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	172380371	173422272	634	-0.0028
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	173422287	173428643	13	0.6944
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	173441132	190542814	11698	0.0144
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	190542878	190652412	41	-0.3576
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	4	190659142	191027923	148	-0.0223
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	15532	12791720	10222	-3e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	12800889	12838533	15	0.6624
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	12849201	21376844	5490	0.0053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	21377839	21377853	2	-2.3365
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	21386066	53141339	17278	0.0088
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	53143266	53144159	3	-1.5773
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	53153657	57329115	2887	0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	57329530	57333293	26	-0.5583
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	57333515	68846303	7304	0.0017
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	68867294	69118135	5	-1.4651
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	69233427	70254905	12	0.031
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	70254906	70307544	6	1.1562
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	70349193	76071966	3688	0.004
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	76072263	76134777	33	0.3006
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	76135810	78107908	1229	-0.0061
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	78109991	78111171	3	-1.179
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	78115511	81418763	1943	-0.0031
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	81419278	81427482	3	-2.8833
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	81428038	81451312	8	-0.6929
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	81451528	95235516	7588	0.0133
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	95236415	95236467	2	-1.8063
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	95237185	137724048	27170	0.0057
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	137729689	137734881	2	-1.5987
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	137735703	177198449	26171	0.0035
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	177227551	177232605	3	2.4018
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	177254965	180374523	1813	0.0166
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	180378710	180442400	22	0.7131
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	5	180442441	180790320	168	0.1207
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	149661	10878371	8609	5e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	10878887	10879556	2	-1.4042
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	10880172	23743017	9629	0.0049
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	23744672	23745430	2	-2.4501
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	23747732	29837072	3505	0.0061
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	29837187	29850380	20	1.2569
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	29871636	32449523	1188	0.0844
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	32452801	32626618	69	-0.5827
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	32650612	32690027	45	0.069
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	32690797	32690830	3	2.2082
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	32692227	53931151	13698	0.0054
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	53931230	53931855	6	-1.0492
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	53935348	54845685	603	0.0046
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	54848455	54849190	2	-1.9734
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	54850139	65336942	3749	0.0195
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	65347544	65348992	2	-2.4754
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	65350776	77014948	7642	0.0164
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	77016900	77016926	3	1.6298
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	77016993	78962889	1294	0.0012
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	78969065	79039234	113	-0.5925
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	79041633	103734829	15485	0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	103737976	103765470	47	0.8163
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	103765670	165298816	40292	0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	165299302	165309456	2	-1.8679
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	6	165309528	171051005	3947	0.0012
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	43355	145185	89	0.0587
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	148300	158626	11	-0.8363
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	161442	9105028	5270	0.0165
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	9105572	9114398	5	-1.2994
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	9117417	19509058	8499	0.0181
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	19509515	19529000	30	0.5558
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	19532215	72201865	32095	0.0013
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	72206435	72263780	26	-0.9053
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	72265773	126044974	31423	0.0107
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	126045482	126046876	13	1.0788
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	126046877	133789997	4730	0.0047
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	133790011	133795634	4	-1.0994
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	133795665	135496670	1220	-0.0076
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	135497224	135497401	3	1.1657
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	135497550	141760830	3985	0.0159
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	141761874	141797564	47	0.2697
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	141798990	142474939	448	0.0076
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	142476719	142479722	8	-3.417
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	142479807	142486045	19	-1.6484
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	142486115	143218858	468	0.0252
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	143218968	143408430	33	0.7777
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	143425378	143427771	13	-0.0952
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	143427786	143574781	58	0.601
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	143575983	143909445	268	-0.0039
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	143911624	144066947	39	-0.4917
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	7	144074929	159127004	9692	-0.0029
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	8	31254	7193821	7830	9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	8	7214611	7238019	24	-0.6383
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	8	7250380	7746368	114	0.1037
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	8	7747134	7747699	2	-2.1909
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	8	7752048	146298155	87972	0.0033
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	9	46587	41985187	31357	0.0109
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	9	42023107	42065266	4	-1.6345
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	9	42065343	44629223	110	1e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	9	44727859	44855737	36	0.5166
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	9	44866028	68183981	155	-0.0714
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	9	68186051	68186056	3	2.4013
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	9	68186057	90522594	14470	0.0032
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	9	90554151	90554219	2	-2.0467
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	9	90557957	141091394	33788	0.0063
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	72759	48902376	32235	0.0061
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	48928791	48958519	5	-0.8274
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	49031175	49802868	358	0.0122
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	49805368	49806169	3	-1.4015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	49807631	67283878	12097	0.0096
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	67283911	67336382	71	0.3394
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	67336488	94098578	17931	0.0024
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	94103867	94109791	4	-1.0212
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	94112156	123432188	19749	0
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	123432652	123460906	47	-0.814
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	123461654	124343951	646	-0.0034
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	124344109	124357726	8	-0.9447
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	10	124383013	135506704	7920	0.0014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	198510	4967650	2475	0.0153
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	4968117	4976907	43	0.612
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	4977011	5783112	779	0.014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	5783395	5809338	37	0.3678
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	5809461	18940322	9421	0.0041
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	18940856	18962363	62	0.3216
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	18970705	51096372	21446	0.0062
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	51126742	51127104	2	-2.0193
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	51163249	51564427	144	0.1007
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	54701645	54758291	4	1.5822
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	54773893	55376280	244	0.0777
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	55376498	55453009	51	0.4849
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	55453576	92022485	21550	0.0117
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	92024786	92027899	6	-0.9949
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	92028153	107230719	10904	0.0083
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	107238656	107239128	7	-2.0291
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	11	107252362	134944770	19951	-6e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	150442	2235176	1265	0.0546
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	2235628	2257920	43	-0.7198
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	2258023	7994787	4064	0.0128
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	8004425	8123900	60	0.7524
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	8130958	9436635	682	-0.0019
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	9442850	9467809	6	-0.8229
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	9472365	9923357	272	0.0177
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	9923917	9924044	2	-1.4074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	9924912	25646179	10860	0.0101
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	25649187	25654445	9	-1.1006
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	25655522	75332781	29205	0.0106
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	75334712	75340176	5	-1.318
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	75347070	132120715	37983	9e-04
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	132132584	132133335	13	0.6175
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	12	132142331	133778189	572	0.0707
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	13	19026949	23629187	2892	0.0045
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	13	23629210	23633515	13	-2.1861
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	13	23638195	27965544	3300	0.0067
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	13	27967563	28111794	120	0.569
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	13	28113019	38071135	7234	0.0014
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	13	38072036	38084757	16	0.7927
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	13	38088330	115108397	50711	0.0136
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	19002124	86451911	42618	0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	86460626	86470985	17	-3.3027
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	86472124	86478122	5	-7.955
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	86480699	86488441	16	-4.0837
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	86490211	99663847	9323	0.0074
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	99664984	99666400	3	-1.3726
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	99667687	106526966	3176	-0.0092
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	106530364	106547314	8	-0.8238
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	106547507	106561441	9	-2.9275
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	106567100	106934284	200	0.1226
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	106934548	106943834	4	-0.8103
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	106948568	107145272	116	0.0371
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	107145564	107179847	29	0.49
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	14	107184184	107285437	68	0.0245
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	15	20016328	20269773	57	0.0983
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	15	20284066	20843562	102	-0.3444
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	15	20847933	24669745	1268	-0.0073
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	15	24674751	24718596	40	-0.5669
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	15	24725293	34714123	6352	0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	15	34719795	34855818	73	-0.7036
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	15	34858010	76891241	26460	-0.0021
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	15	76891511	76895775	21	1.0673
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	15	76902179	102469040	17681	0.0062
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	16	60777	55796594	27319	0.015
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	16	55798222	55809224	9	1.2493
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	16	55809466	78371608	14437	0.0043
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	16	78372440	78383140	15	-2.6469
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	16	78384738	90287535	10643	0.0186
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	17	526	44351929	23619	0.0115
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	17	44352872	44752300	53	0.7483
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	17	44764994	77256254	19873	0.004
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	17	77256882	77256913	2	1.3372
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	17	77257123	81049726	1739	0.0138
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	18	11543	15158341	10407	0.0073
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	18	15170292	15175018	2	-1.6052
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	18	15177772	19899911	663	0.0155
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	18	19900326	19900462	2	-1.9597
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	18	19900587	78015057	39730	0.005
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	19	90910	20746190	9078	0.0296
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	19	20759077	20759858	2	-1.852
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	19	20765130	24428243	2146	0.0171
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	19	24430293	24433197	3	-1.176
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	19	24436648	54722275	15490	0.0163
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	19	54730202	54753340	18	1.0285
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	19	54753477	56282369	762	0.0511
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	19	56282535	56283067	3	1.3601
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	19	56286293	59097854	1849	0.0336
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	20	61305	1560999	1206	0.0289
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	20	1561580	1593893	41	-1.2511
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	20	1597946	5505135	2854	0.019
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	20	5505764	5744029	148	0.2496
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	20	5744455	62956153	38243	0.0056
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	21	10736871	48096957	24413	0.0096
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	22	16052528	22307519	3088	0.0196
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	22	22315089	22358231	49	-0.8183
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	22	22360650	22367697	6	-2.0128
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	22	22371638	22513520	256	-0.8235
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	22	22513579	22534324	31	-1.3169
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	22	22534576	22573987	89	-0.8793
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	22	22579341	24271745	1068	0.0154
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	22	24283016	24332933	30	-0.4863
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	22	24337307	51234455	18940	0.0059
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	X	168477	103253775	54300	0.0098
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	X	103257989	103268543	18	0.9728
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	X	103270153	103270854	7	0.2509
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	X	103270934	103305273	32	0.9603
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	X	103305310	134753919	17612	0.005
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	X	134757482	134802306	31	1.0791
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	X	134807391	155182354	12479	0.0066
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	Y	2650438	14491110	3060	-0.9384
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	Y	14491593	14498428	5	-1.9307
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	Y	14499096	16160930	755	-0.8917
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	Y	16161305	16161770	2	-2.4593
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	Y	16163905	17377454	660	-0.9174
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	Y	17382086	17383164	3	-2.4529
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	Y	17383375	22842676	2472	-0.9202
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	Y	22843602	22844820	3	-2.4278
RETCH_p_TCGA_180_SNP_2N_GenomeWideSNP_6_D11_895706	Y	22846416	59018259	1673	-0.9185
