Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-52-PABKLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PABKLN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PABKLN-01A-01D	DNA	EFO	SRS605062	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PABKLN-01A-01D A31885 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	175	A31885	SRX587860	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PABKLN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PABKLN-01A-01D A31885 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31885_4_lanes_dupsFlagged_v2.bam	SRR2889895	@dbgap@:reads/SRP012005/SRS605062/SRX587860/SRR2889895/SRR2889895.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PABKLN-01A-01D.fractional.bw	3
TARGET-52-PADWRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADWRZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADWRZ-01A-01D	DNA	EFO	SRS924785	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADWRZ-01A-01D A48368 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48368	SRX1041162	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PADWRZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-20	TARGET-52-PADWRZ-01A-01D A48368 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48368_2_lanes_dupsFlagged.bam	SRR2042884	@dbgap@:reads/SRP012005/SRS924785/SRX1041162/SRR2042884/SRR2042884.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PADWRZ-01A-01D.fractional.bw	3
TARGET-52-PADYCE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PADYCE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYCE-01A-01D	DNA	EFO	SRS924792	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYCE-01A-01D A48357 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48357	SRX1041142	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PADYCE-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PADYCE-01A-01D A48357 run	sequencing assay	EFO	237	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48357_2_lanes_dupsFlagged.bam	SRR2042885	@dbgap@:reads/SRP012005/SRS924792/SRX1041142/SRR2042885/SRR2042885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PADYCE-01A-01D.fractional.bw	3
TARGET-52-PADYZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PADYZI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PADYZI-01A-01D	DNA	EFO	SRS605547	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PADYZI-01A-01D A31894 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	159	A31894	SRX587867	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PADYZI-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PADYZI-01A-01D A31894 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31894_4_lanes_dupsFlagged_v2.bam	SRR2889918	@dbgap@:reads/SRP012005/SRS605547/SRX587867/SRR2889918/SRR2889918.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PADYZI-01A-01D.fractional.bw	3
TARGET-52-PAEHIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAEHIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAEHIP-01A-01D	DNA	EFO	SRS924779	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAEHIP-01A-01D A48361 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48361	SRX1041153	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAEHIP-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAEHIP-01A-01D A48361 run	sequencing assay	EFO	240	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48361_2_lanes_dupsFlagged.bam	SRR2042888	@dbgap@:reads/SRP012005/SRS924779/SRX1041153/SRR2042888/SRR2042888.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAEHIP-01A-01D.fractional.bw	3
TARGET-52-PAJLRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJLRA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLRA-01A-01D	DNA	EFO	SRS924748	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLRA-01A-01D A48377 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48377	SRX1041148	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLRA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-03	TARGET-52-PAJLRA-01A-01D A48377 run	sequencing assay	EFO	240	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48377_2_lanes_dupsFlagged.bam	SRR2042891	@dbgap@:reads/SRP012005/SRS924748/SRX1041148/SRR2042891/SRR2042891.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAJLRA-01A-01D.fractional.bw	3
TARGET-52-PAJLWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJLWM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJLWM-01A-01D	DNA	EFO	SRS605060	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJLWM-01A-01D A31886 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	169	A31886	SRX587864	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAJLWM-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-07	TARGET-52-PAJLWM-01A-01D A31886 run	sequencing assay	EFO	196	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31886_4_lanes_dupsFlagged_v2.bam	SRR2889883	@dbgap@:reads/SRP012005/SRS605060/SRX587864/SRR2889883/SRR2889883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAJLWM-01A-01D.fractional.bw	3
TARGET-52-PAJMBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJMBW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMBW-01A-01D	DNA	EFO	SRS924783	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMBW-01A-01D A48372 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48372	SRX1041163	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMBW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-26	TARGET-52-PAJMBW-01A-01D A48372 run	sequencing assay	EFO	240	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48372_2_lanes_dupsFlagged.bam	SRR2042873	@dbgap@:reads/SRP012005/SRS924783/SRX1041163/SRR2042873/SRR2042873.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAJMBW-01A-01D.fractional.bw	3
TARGET-52-PAJMRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJMRB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJMRB-01A-01D	DNA	EFO	SRS605054	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJMRB-01A-01D A31887 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	203	A31887	SRX587837	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAJMRB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-07	TARGET-52-PAJMRB-01A-01D A31887 run	sequencing assay	EFO	196	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31887_4_lanes_dupsFlagged_v2.bam	SRR2889907	@dbgap@:reads/SRP012005/SRS605054/SRX587837/SRR2889907/SRR2889907.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAJMRB-01A-01D.fractional.bw	3
TARGET-52-PAJNER	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNER-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNER-01A-01D	DNA	EFO	SRS605065	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNER-01A-01D A31888 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	229	A31888	SRX587854	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNER-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-07	TARGET-52-PAJNER-01A-01D A31888 run	sequencing assay	EFO	196	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31888_4_lanes_dupsFlagged_v2.bam	SRR2889912	@dbgap@:reads/SRP012005/SRS605065/SRX587854/SRR2889912/SRR2889912.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAJNER-01A-01D.fractional.bw	3
TARGET-52-PAJNFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFP-01A-01D	DNA	EFO	SRS605057	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFP-01A-01D A31889 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	195	A31889	SRX587838	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PAJNFP-01A-01D A31889 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31889_4_lanes_dupsFlagged_v2.bam	SRR2889923	@dbgap@:reads/SRP012005/SRS605057/SRX587838/SRR2889923/SRR2889923.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAJNFP-01A-01D.fractional.bw	3
TARGET-52-PAJNFZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAJNFZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJNFZ-01A-01D	DNA	EFO	SRS605061	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJNFZ-01A-01D A31890 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	160	A31890	SRX587855	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAJNFZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PAJNFZ-01A-01D A31890 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31890_4_lanes_dupsFlagged_v2.bam	SRR2889905	@dbgap@:reads/SRP012005/SRS605061/SRX587855/SRR2889905/SRR2889905.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAJNFZ-01A-01D.fractional.bw	3
TARGET-52-PAJPHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAJPHJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAJPHJ-01A-01D	DNA	EFO	SRS924761	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAJPHJ-01A-01D A48374 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48374	SRX1041149	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAJPHJ-01A-01D using Illumina HiSeq 2500."	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-26	TARGET-52-PAJPHJ-01A-01D A48374 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48374_2_lanes_dupsFlagged.bam	SRR2042872	@dbgap@:reads/SRP012005/SRS924761/SRX1041149/SRR2042872/SRR2042872.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAJPHJ-01A-01D.fractional.bw	3
TARGET-52-PAKHTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAKHTL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKHTL-01A-01D	DNA	EFO	SRS605064	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKHTL-01A-01D A31891 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	165	A31891	SRX587871	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAKHTL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PAKHTL-01A-01D A31891 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31891_4_lanes_dupsFlagged_v2.bam	SRR2889892	@dbgap@:reads/SRP012005/SRS605064/SRX587871/SRR2889892/SRR2889892.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAKHTL-01A-01D.fractional.bw	3
TARGET-52-PAKLYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKLYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKLYZ-01A-01D	DNA	EFO	SRS924787	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKLYZ-01A-01D A48376 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48376	SRX1041143	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAKLYZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-26	TARGET-52-PAKLYZ-01A-01D A48376 run	sequencing assay	EFO	239	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48376_2_lanes_dupsFlagged.bam	SRR2042876	@dbgap@:reads/SRP012005/SRS924787/SRX1041143/SRR2042876/SRR2042876.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAKLYZ-01A-01D.fractional.bw	3
TARGET-52-PAKPEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKPEW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKPEW-01A-01D	DNA	EFO	SRS924755	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKPEW-01A-01D A48380 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	249	A48380	SRX1041140	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAKPEW-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-10	TARGET-52-PAKPEW-01A-01D A48380 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48380_2_lanes_dupsFlagged.bam	SRR2042864	@dbgap@:reads/SRP012005/SRS924755/SRX1041140/SRR2042864/SRR2042864.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAKPEW-01A-01D.fractional.bw	3
TARGET-52-PAKTCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAKTCT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAKTCT-01A-01D	DNA	EFO	SRS924789	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAKTCT-01A-01D A48379 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	203	A48379	SRX1041138	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAKTCT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-10	TARGET-52-PAKTCT-01A-01D A48379 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48379_2_lanes_dupsFlagged.bam	SRR2042886	@dbgap@:reads/SRP012005/SRS924789/SRX1041138/SRR2042886/SRR2042886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAKTCT-01A-01D.fractional.bw	3
TARGET-52-PARECB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARECB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARECB-01A-01D	DNA	EFO	SRS301346	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARECB-01A-01D A31875 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	181	A31875	SRX587869	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARECB-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PARECB-01A-01D A31875 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31875_4_lanes_dupsFlagged_v2.bam	SRR2889901	@dbgap@:reads/SRP012005/SRS301346/SRX587869/SRR2889901/SRR2889901.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARECB-01A-01D.fractional.bw	3
TARGET-52-PAREWI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAREWI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAREWI-01A-02D	DNA	EFO	SRS924791	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAREWI-01A-02D A48382 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	222	A48382	SRX1041151	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAREWI-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-10	TARGET-52-PAREWI-01A-02D A48382 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48382_2_lanes_dupsFlagged.bam	SRR2042883	@dbgap@:reads/SRP012005/SRS924791/SRX1041151/SRR2042883/SRR2042883.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAREWI-01A-02D.fractional.bw	3
TARGET-52-PARGRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARGRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARGRN-01A-01D	DNA	EFO	SRS301348	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARGRN-01A-01D A31797 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	188	A31797	SRX587834	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARGRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PARGRN-01A-01D A31797 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31797_4_lanes_dupsFlagged_v2.bam	SRR2889925	@dbgap@:reads/SRP012005/SRS301348/SRX587834/SRR2889925/SRR2889925.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARGRN-01A-01D.fractional.bw	3
TARGET-52-PARIRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARIRN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARIRN-01A-01D	DNA	EFO	SRS301350	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARIRN-01A-01D A31798 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	189	A31798	SRX587847	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARIRN-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PARIRN-01A-01D A31798 run	sequencing assay	EFO	193	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31798_4_lanes_dupsFlagged_v2.bam	SRR2889920	@dbgap@:reads/SRP012005/SRS301350/SRX587847/SRR2889920/SRR2889920.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARIRN-01A-01D.fractional.bw	3
TARGET-52-PARKKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARKKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARKKN-01A-01D	DNA	EFO	SRS924756	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARKKN-01A-01D A48355 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48355	SRX1041154	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARKKN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PARKKN-01A-01D A48355 run	sequencing assay	EFO	239	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48355_2_lanes_dupsFlagged.bam	SRR2042865	@dbgap@:reads/SRP012005/SRS924756/SRX1041154/SRR2042865/SRR2042865.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARKKN-01A-01D.fractional.bw	3
TARGET-52-PARPFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARPFY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARPFY-01A-01D	DNA	EFO	SRS301352	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARPFY-01A-01D A31876 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	233	A31876	SRX587866	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARPFY-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PARPFY-01A-01D A31876 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31876_4_lanes_dupsFlagged_v2.bam	SRR2889886	@dbgap@:reads/SRP012005/SRS301352/SRX587866/SRR2889886/SRR2889886.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARPFY-01A-01D.fractional.bw	3
TARGET-52-PARRCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARRCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARRCL-01A-01D	DNA	EFO	SRS301354	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARRCL-01A-01D A31877 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	233	A31877	SRX587850	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARRCL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PARRCL-01A-01D A31877 run	sequencing assay	EFO	196	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31877_4_lanes_dupsFlagged_v2.bam	SRR2889890	@dbgap@:reads/SRP012005/SRS301354/SRX587850/SRR2889890/SRR2889890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARRCL-01A-01D.fractional.bw	3
TARGET-52-PARTKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARTKH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARTKH-01A-01D	DNA	EFO	SRS924749	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARTKH-01A-01D A48366 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48366	SRX1041158	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARTKH-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-20	TARGET-52-PARTKH-01A-01D A48366 run	sequencing assay	EFO	240	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48366_2_lanes_dupsFlagged.bam	SRR2042882	@dbgap@:reads/SRP012005/SRS924749/SRX1041158/SRR2042882/SRR2042882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARTKH-01A-01D.fractional.bw	3
TARGET-52-PARUGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARUGK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARUGK-01A-01D	DNA	EFO	SRS301356	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARUGK-01A-01D A31799 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	183	A31799	SRX587833	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARUGK-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PARUGK-01A-01D A31799 run	sequencing assay	EFO	193	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31799_4_lanes_dupsFlagged_v2.bam	SRR2889917	@dbgap@:reads/SRP012005/SRS301356/SRX587833/SRR2889917/SRR2889917.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARUGK-01A-01D.fractional.bw	3
TARGET-52-PARZBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PARZBI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZBI-01A-02D	DNA	EFO	SRS605536	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZBI-01A-02D A31892 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	170	A31892	SRX587842	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARZBI-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-07	TARGET-52-PARZBI-01A-02D A31892 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31892_4_lanes_dupsFlagged_v2.bam	SRR2889885	@dbgap@:reads/SRP012005/SRS605536/SRX587842/SRR2889885/SRR2889885.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARZBI-01A-02D.fractional.bw	3
TARGET-52-PARZRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PARZRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PARZRH-01A-02D	DNA	EFO	SRS301358	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PARZRH-01A-02D A48360 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48360	SRX1041157	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PARZRH-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PARZRH-01A-02D A48360 run	sequencing assay	EFO	239	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48360_2_lanes_dupsFlagged.bam	SRR2042879	@dbgap@:reads/SRP012005/SRS301358/SRX1041157/SRR2042879/SRR2042879.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PARZRH-01A-02D.fractional.bw	3
TARGET-52-PASABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASABD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASABD-01A-01D	DNA	EFO	SRS301360	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASABD-01A-01D A31800 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	193	A31800	SRX587849	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASABD-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PASABD-01A-01D A31800 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31800_4_lanes_dupsFlagged_v2.bam	SRR2889910	@dbgap@:reads/SRP012005/SRS301360/SRX587849/SRR2889910/SRR2889910.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASABD-01A-01D.fractional.bw	3
TARGET-52-PASADZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASADZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASADZ-01A-01D	DNA	EFO	SRS301362	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASADZ-01A-01D A31801 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	222	A31801	SRX588476	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASADZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PASADZ-01A-01D A31801 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31801_4_lanes_dupsFlagged_v2.bam	SRR2889906	@dbgap@:reads/SRP012005/SRS301362/SRX588476/SRR2889906/SRR2889906.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASADZ-01A-01D.fractional.bw	3
TARGET-52-PASAMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASAMZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASAMZ-01A-01D	DNA	EFO	SRS924746	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASAMZ-01A-01D A48359 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48359	SRX1041156	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASAMZ-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PASAMZ-01A-01D A48359 run	sequencing assay	EFO	237	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48359_2_lanes_dupsFlagged.bam	SRR2042871	@dbgap@:reads/SRP012005/SRS924746/SRX1041156/SRR2042871/SRR2042871.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASAMZ-01A-01D.fractional.bw	3
TARGET-52-PASCDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASCDH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASCDH-01A-01D	DNA	EFO	SRS301364	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASCDH-01A-01D A31802 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	177	A31802	SRX587859	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASCDH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PASCDH-01A-01D A31802 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31802_4_lanes_dupsFlagged_v2.bam	SRR2889893	@dbgap@:reads/SRP012005/SRS301364/SRX587859/SRR2889893/SRR2889893.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASCDH-01A-01D.fractional.bw	3
TARGET-52-PASDLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASDLA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASDLA-01A-01D	DNA	EFO	SRS301366	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASDLA-01A-01D A31878 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	225	A31878	SRX587848	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASDLA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-05	TARGET-52-PASDLA-01A-01D A31878 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31878_4_lanes_dupsFlagged_v2.bam	SRR2889913	@dbgap@:reads/SRP012005/SRS301366/SRX587848/SRR2889913/SRR2889913.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASDLA-01A-01D.fractional.bw	3
TARGET-52-PASGCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGCL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGCL-01A-02D	DNA	EFO	SRS301368	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGCL-01A-02D A48370 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48370	SRX1041152	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASGCL-01A-02D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-03-13	TARGET-52-PASGCL-01A-02D A48370 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48370_2_lanes_dupsFlagged.bam	SRR2042880	@dbgap@:reads/SRP012005/SRS301368/SRX1041152/SRR2042880/SRR2042880.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASGCL-01A-02D.fractional.bw	3
TARGET-52-PASGGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASGGN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASGGN-01A-01D	DNA	EFO	SRS924757	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASGGN-01A-01D A48363 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48363	SRX1041145	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASGGN-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-20	TARGET-52-PASGGN-01A-01D A48363 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48363_2_lanes_dupsFlagged.bam	SRR2042867	@dbgap@:reads/SRP012005/SRS924757/SRX1041145/SRR2042867/SRR2042867.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASGGN-01A-01D.fractional.bw	3
TARGET-52-PASILR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASILR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASILR-01A-01D	DNA	EFO	SRS924745	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASILR-01A-01D A48367 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48367	SRX1041147	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASILR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-20	TARGET-52-PASILR-01A-01D A48367 run	sequencing assay	EFO	240	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48367_2_lanes_dupsFlagged.bam	SRR2042874	@dbgap@:reads/SRP012005/SRS924745/SRX1041147/SRR2042874/SRR2042874.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASILR-01A-01D.fractional.bw	3
TARGET-52-PASNED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASNED-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASNED-01A-01D	DNA	EFO	SRS924784	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASNED-01A-01D A48364 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48364	SRX1041159	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASNED-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-20	TARGET-52-PASNED-01A-01D A48364 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48364_2_lanes_dupsFlagged.bam	SRR2042866	@dbgap@:reads/SRP012005/SRS924784/SRX1041159/SRR2042866/SRR2042866.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASNED-01A-01D.fractional.bw	3
TARGET-52-PASRHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASRHU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASRHU-01A-02D	DNA	EFO	SRS301370	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASRHU-01A-02D A31879 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	233	A31879	SRX587839	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASRHU-01A-02D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-05	TARGET-52-PASRHU-01A-02D A31879 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31879_4_lanes_dupsFlagged_v2.bam	SRR2889889	@dbgap@:reads/SRP012005/SRS301370/SRX587839/SRR2889889/SRR2889889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASRHU-01A-02D.fractional.bw	3
TARGET-52-PASVDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASVDP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASVDP-01A-01D	DNA	EFO	SRS301372	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASVDP-01A-01D A31803 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	219	A31803	SRX587865	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASVDP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PASVDP-01A-01D A31803 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31803_4_lanes_dupsFlagged_v2.bam	SRR2889927	@dbgap@:reads/SRP012005/SRS301372/SRX587865/SRR2889927/SRR2889927.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASVDP-01A-01D.fractional.bw	3
TARGET-52-PASWZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASWZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASWZZ-01A-01D	DNA	EFO	SRS301374	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASWZZ-01A-01D A31804 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	182	A31804	SRX587841	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASWZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PASWZZ-01A-01D A31804 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31804_4_lanes_dupsFlagged_v2.bam	SRR2889902	@dbgap@:reads/SRP012005/SRS301374/SRX587841/SRR2889902/SRR2889902.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASWZZ-01A-01D.fractional.bw	3
TARGET-52-PASXGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PASXGF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXGF-01A-01D	DNA	EFO	SRS924747	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXGF-01A-01D A48371 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48371	SRX1041139	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASXGF-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-26	TARGET-52-PASXGF-01A-01D A48371 run	sequencing assay	EFO	240	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48371_2_lanes_dupsFlagged.bam	SRR2042875	@dbgap@:reads/SRP012005/SRS924747/SRX1041139/SRR2042875/SRR2042875.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASXGF-01A-01D.fractional.bw	3
TARGET-52-PASXNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASXNA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASXNA-01A-01D	DNA	EFO	SRS301376	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASXNA-01A-01D A31880 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	222	A31880	SRX587845	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASXNA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-05	TARGET-52-PASXNA-01A-01D A31880 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31880_4_lanes_dupsFlagged_v2.bam	SRR2889921	@dbgap@:reads/SRP012005/SRS301376/SRX587845/SRR2889921/SRR2889921.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASXNA-01A-01D.fractional.bw	3
TARGET-52-PASYNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASYNF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASYNF-01A-01D	DNA	EFO	SRS605552	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASYNF-01A-01D A31893 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	242	A31893	SRX587870	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASYNF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-28	TARGET-52-PASYNF-01A-01D A31893 run	sequencing assay	EFO	196	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31893_4_lanes_dupsFlagged_v2.bam	SRR2889882	@dbgap@:reads/SRP012005/SRS605552/SRX587870/SRR2889882/SRR2889882.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASYNF-01A-01D.fractional.bw	3
TARGET-52-PASZYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PASZYE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PASZYE-01A-01D	DNA	EFO	SRS301378	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PASZYE-01A-01D A31805 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	244	A31805	SRX587836	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PASZYE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PASZYE-01A-01D A31805 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31805_4_lanes_dupsFlagged_v2.bam	SRR2889919	@dbgap@:reads/SRP012005/SRS301378/SRX587836/SRR2889919/SRR2889919.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PASZYE-01A-01D.fractional.bw	3
TARGET-52-PATAFT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATAFT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATAFT-01A-01D	DNA	EFO	SRS301380	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATAFT-01A-01D A31881 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	141	A31881	SRX587844	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PATAFT-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-05	TARGET-52-PATAFT-01A-01D A31881 run	sequencing assay	EFO	196	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31881_4_lanes_dupsFlagged_v2.bam	SRR2889914	@dbgap@:reads/SRP012005/SRS301380/SRX587844/SRR2889914/SRR2889914.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PATAFT-01A-01D.fractional.bw	3
TARGET-52-PATBLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATBLF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATBLF-01A-01D	DNA	EFO	SRS301384	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATBLF-01A-01D A31806 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	165	A31806	SRX587874	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PATBLF-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PATBLF-01A-01D A31806 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31806_4_lanes_dupsFlagged_v2.bam	SRR2889887	@dbgap@:reads/SRP012005/SRS301384/SRX587874/SRR2889887/SRR2889887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PATBLF-01A-01D.fractional.bw	3
TARGET-52-PATDVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATDVL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATDVL-01A-01D	DNA	EFO	SRS301386	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATDVL-01A-01D A31807 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	187	A31807	SRX587873	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PATDVL-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PATDVL-01A-01D A31807 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31807_4_lanes_dupsFlagged_v2.bam	SRR2889915	@dbgap@:reads/SRP012005/SRS301386/SRX587873/SRR2889915/SRR2889915.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PATDVL-01A-01D.fractional.bw	3
TARGET-52-PATENH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATENH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATENH-01A-01D	DNA	EFO	SRS301388	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATENH-01A-01D A31882 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	170	A31882	SRX587851	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PATENH-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-05	TARGET-52-PATENH-01A-01D A31882 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31882_4_lanes_dupsFlagged_v2.bam	SRR2889924	@dbgap@:reads/SRP012005/SRS301388/SRX587851/SRR2889924/SRR2889924.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PATENH-01A-01D.fractional.bw	3
TARGET-52-PATFXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFXW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFXW-01A-01D	DNA	EFO	SRS301390	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFXW-01A-01D A31808 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	185	A31808	SRX587832	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PATFXW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-08	TARGET-52-PATFXW-01A-01D A31808 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31808_4_lanes_dupsFlagged_v2.bam	SRR2889897	@dbgap@:reads/SRP012005/SRS301390/SRX587832/SRR2889897/SRR2889897.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PATFXW-01A-01D.fractional.bw	3
TARGET-52-PATFZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATFZZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATFZZ-01A-01D	DNA	EFO	SRS301392	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATFZZ-01A-01D A31874 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	175	A31874	SRX587862	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PATFZZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PATFZZ-01A-01D A31874 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31874_4_lanes_dupsFlagged_v2.bam	SRR2889916	@dbgap@:reads/SRP012005/SRS301392/SRX587862/SRR2889916/SRR2889916.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PATFZZ-01A-01D.fractional.bw	3
TARGET-52-PATXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXEE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXEE-01A-01D	DNA	EFO	SRS301394	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXEE-01A-01D A31883 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	175	A31883	SRX587863	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PATXEE-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-05	TARGET-52-PATXEE-01A-01D A31883 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31883_4_lanes_dupsFlagged_v2.bam	SRR2889904	@dbgap@:reads/SRP012005/SRS301394/SRX587863/SRR2889904/SRR2889904.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PATXEE-01A-01D.fractional.bw	3
TARGET-52-PATXKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PATXKA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATXKA-01A-01D	DNA	EFO	SRS301396	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATXKA-01A-01D A31884 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	169	A31884	SRX587852	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PATXKA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-05	TARGET-52-PATXKA-01A-01D A31884 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31884_4_lanes_dupsFlagged_v2.bam	SRR2889909	@dbgap@:reads/SRP012005/SRS301396/SRX587852/SRR2889909/SRR2889909.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PATXKA-01A-01D.fractional.bw	3
TARGET-52-PATYUA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PATYUA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PATYUA-01A-01D	DNA	EFO	SRS924758	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PATYUA-01A-01D A48375 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48375	SRX1041144	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PATYUA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-26	TARGET-52-PATYUA-01A-01D A48375 run	sequencing assay	EFO	239	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48375_2_lanes_dupsFlagged.bam	SRR2042890	@dbgap@:reads/SRP012005/SRS924758/SRX1041144/SRR2042890/SRR2042890.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PATYUA-01A-01D.fractional.bw	3
TARGET-52-PAUCGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUCGJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUCGJ-01A-01D	DNA	EFO	SRS605550	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUCGJ-01A-01D A31895 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	170	A31895	SRX587872	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAUCGJ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-23	TARGET-52-PAUCGJ-01A-01D A31895 run	sequencing assay	EFO	196	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31895_4_lanes_dupsFlagged_v2.bam	SRR2889894	@dbgap@:reads/SRP012005/SRS605550/SRX587872/SRR2889894/SRR2889894.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAUCGJ-01A-01D.fractional.bw	3
TARGET-52-PAUDPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUDPV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUDPV-01A-01D	DNA	EFO	SRS605553	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUDPV-01A-01D A31896 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	175	A31896	SRX587857	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAUDPV-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-05	TARGET-52-PAUDPV-01A-01D A31896 run	sequencing assay	EFO	196	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31896_4_lanes_dupsFlagged_v2.bam	SRR2889899	@dbgap@:reads/SRP012005/SRS605553/SRX587857/SRR2889899/SRR2889899.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAUDPV-01A-01D.fractional.bw	3
TARGET-52-PAUEKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUEKW-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUEKW-01A-01D	DNA	EFO	SRS605545	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUEKW-01A-01D A31897 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	175	A31897	SRX587856	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAUEKW-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-09-05	TARGET-52-PAUEKW-01A-01D A31897 run	sequencing assay	EFO	195	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.17.20.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31897_4_lanes_dupsFlagged_v2.bam	SRR2889881	@dbgap@:reads/SRP012005/SRS605545/SRX587856/SRR2889881/SRR2889881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAUEKW-01A-01D.fractional.bw	3
TARGET-52-PAUFVP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUFVP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUFVP-01A-01D	DNA	EFO	SRS605535	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUFVP-01A-01D A31898 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	190	A31898	SRX587840	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAUFVP-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-28	TARGET-52-PAUFVP-01A-01D A31898 run	sequencing assay	EFO	196	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31898_4_lanes_dupsFlagged_v2.bam	SRR2889896	@dbgap@:reads/SRP012005/SRS605535/SRX587840/SRR2889896/SRR2889896.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAUFVP-01A-01D.fractional.bw	3
TARGET-52-PAUGYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUGYZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUGYZ-01A-01D	DNA	EFO	SRS605551	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUGYZ-01A-01D A31899 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	165	A31899	SRX587835	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAUGYZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-28	TARGET-52-PAUGYZ-01A-01D A31899 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31899_4_lanes_dupsFlagged_v2.bam	SRR2889900	@dbgap@:reads/SRP012005/SRS605551/SRX587835/SRR2889900/SRR2889900.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAUGYZ-01A-01D.fractional.bw	3
TARGET-52-PAUHAZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUHAZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUHAZ-01A-01D	DNA	EFO	SRS605538	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUHAZ-01A-01D A31900 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	141	A31900	SRX587846	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAUHAZ-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-28	TARGET-52-PAUHAZ-01A-01D A31900 run	sequencing assay	EFO	193	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31900_4_lanes_dupsFlagged_v2.bam	SRR2889898	@dbgap@:reads/SRP012005/SRS605538/SRX587846/SRR2889898/SRR2889898.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAUHAZ-01A-01D.fractional.bw	3
TARGET-52-PAUNPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Discovery	TARGET-52-PAUNPA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAUNPA-01A-01D	DNA	EFO	SRS605542	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAUNPA-01A-01D A31901 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	180	A31901	SRX587868	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAUNPA-01A-01D using Illumina HiSeq 2000"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2000:01	BCCA	2013-08-28	TARGET-52-PAUNPA-01A-01D A31901 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.12.4.2	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A31901_4_lanes_dupsFlagged_v2.bam	SRR2889908	@dbgap@:reads/SRP012005/SRS605542/SRX587868/SRR2889908/SRR2889908.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAUNPA-01A-01D.fractional.bw	3
TARGET-52-PAVCKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVCKS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVCKS-01A-01D	DNA	EFO	SRS924751	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVCKS-01A-01D A48354 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48354	SRX1041150	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAVCKS-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAVCKS-01A-01D A48354 run	sequencing assay	EFO	235	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48354_2_lanes_dupsFlagged.bam	SRR2042887	@dbgap@:reads/SRP012005/SRS924751/SRX1041150/SRR2042887/SRR2042887.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAVCKS-01A-01D.fractional.bw	3
TARGET-52-PAVDPR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVDPR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVDPR-01A-01D	DNA	EFO	SRS924762	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVDPR-01A-01D A48378 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	218	A48378	SRX1041161	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAVDPR-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-10	TARGET-52-PAVDPR-01A-01D A48378 run	sequencing assay	EFO	240	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48378_2_lanes_dupsFlagged.bam	SRR2042868	@dbgap@:reads/SRP012005/SRS924762/SRX1041161/SRR2042868/SRR2042868.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAVDPR-01A-01D.fractional.bw	3
TARGET-52-PAVITI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVITI-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVITI-01A-01D	DNA	EFO	SRS924753	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVITI-01A-01D A48358 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48358	SRX1041160	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAVITI-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAVITI-01A-01D A48358 run	sequencing assay	EFO	238	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48358_2_lanes_dupsFlagged.bam	SRR2042881	@dbgap@:reads/SRP012005/SRS924753/SRX1041160/SRR2042881/SRR2042881.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAVITI-01A-01D.fractional.bw	3
TARGET-52-PAVVIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVVIT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVVIT-01A-01D	DNA	EFO	SRS924794	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVVIT-01A-01D A48381 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM	230	A48381	SRX1041146	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAVVIT-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-02-10	TARGET-52-PAVVIT-01A-01D A48381 run	sequencing assay	EFO	240	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48381_2_lanes_dupsFlagged.bam	SRR2042869	@dbgap@:reads/SRP012005/SRS924794/SRX1041146/SRR2042869/SRR2042869.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAVVIT-01A-01D.fractional.bw	3
TARGET-52-PAVYDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYDM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYDM-01A-01D	DNA	EFO	SRS924796	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYDM-01A-01D A48365 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48365	SRX1041141	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAVYDM-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-20	TARGET-52-PAVYDM-01A-01D A48365 run	sequencing assay	EFO	242	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48365_2_lanes_dupsFlagged.bam	SRR2042878	@dbgap@:reads/SRP012005/SRS924796/SRX1041141/SRR2042878/SRR2042878.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAVYDM-01A-01D.fractional.bw	3
TARGET-52-PAVYKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAVYKD-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAVYKD-01A-01D	DNA	EFO	SRS924780	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAVYKD-01A-01D A48369 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48369	SRX1041165	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAVYKD-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-26	TARGET-52-PAVYKD-01A-01D A48369 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48369_2_lanes_dupsFlagged.bam	SRR2042870	@dbgap@:reads/SRP012005/SRS924780/SRX1041165/SRR2042870/SRR2042870.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAVYKD-01A-01D.fractional.bw	3
TARGET-52-PAWDGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWDGA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWDGA-01A-01D	DNA	EFO	SRS924788	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWDGA-01A-01D A48373 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48373	SRX1040751	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAWDGA-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-26	TARGET-52-PAWDGA-01A-01D A48373 run	sequencing assay	EFO	241	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48373_2_lanes_dupsFlagged.bam	SRR2042470	@dbgap@:reads/SRP012005/SRS924788/SRX1040751/SRR2042470/SRR2042470.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAWDGA-01A-01D.fractional.bw	3
TARGET-52-PAWFBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFBL-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFBL-01A-01D	DNA	EFO	SRS924764	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFBL-01A-01D A48362 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48362	SRX1041164	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFBL-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-20	TARGET-52-PAWFBL-01A-01D A48362 run	sequencing assay	EFO	239	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48362_2_lanes_dupsFlagged.bam	SRR2042877	@dbgap@:reads/SRP012005/SRS924764/SRX1041164/SRR2042877/SRR2042877.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAWFBL-01A-01D.fractional.bw	3
TARGET-52-PAWFWK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Rhabdoid Tumor of the Kidney	NCIt	Validation	TARGET-52-PAWFWK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-52-PAWFWK-01A-01D	DNA	EFO	SRS924778	bcgsc.ca:Protocol:Bisulfiteseq-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-52-PAWFWK-01A-01D A48356 library	PAIRED	GENOMIC	Bisulfite-Seq	RANDOM		A48356	SRX1041155	"Bisulfite-Seq analysis of rhabdoid tumor sample TARGET-52-PAWFWK-01A-01D using Illumina HiSeq 2500"	bcgsc.ca:Protocol:Bisulfiteseq-Sequence-Illumina-HiSeq2500:01	BCCA	2015-01-22	TARGET-52-PAWFWK-01A-01D A48356 run	sequencing assay	EFO	235	bcgsc.ca:Protocol:Bisulfiteseq-BaseCall-Illumina:01	Illumina RTA 1.18.64.0	bcgsc.ca:Protocol:Bisulfiteseq-ReadAlign:01	A48356_2_lanes_dupsFlagged.bam	SRR2042889	@dbgap@:reads/SRP012005/SRS924778/SRX1041155/SRR2042889/SRR2042889.sra	2	GRCh37-lite	bcgsc.ca:Protocol:Bisulfiteseq-Methylation:01	TARGET-52-PAWFWK-01A-01D.fractional.bw	3
