Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[NOMINAL_SDEV]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Comment[Library Batch]	Description	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Parameter Value[Software Versions]	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-03A-01D	DNA	EFO	SRS160200	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAKSWW-03A-01D ING_ALLSRG.PAKSWW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAKSWW03A-1_1pA	SRX099461		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAKSWW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAKSWW-03A-01D ING_ALLSRG.PAKSWW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_2.bam	SRR557346	@dbgap@:reads/SRP011999/SRS160200/SRX099461/SRR557346/SRR557346.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-03A-01D	DNA	EFO	SRS160200	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAKSWW-03A-01D ING_ALLSRG.PAKSWW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAKSWW03A-1_1pA	SRX099461		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAKSWW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAKSWW-03A-01D ING_ALLSRG.PAKSWW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_2.bam	SRR557346	@dbgap@:reads/SRP011999/SRS160200/SRX099461/SRR557346/SRR557346.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAKSWW-10A-01D ING_ALLSRG.PAKSWW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAKSWW10A-1_1pA	SRX089168		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAKSWW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAKSWW-10A-01D ING_ALLSRG.PAKSWW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101221_SN580_0035_A80Y1DABXX_7.bam	SRR563937	@dbgap@:reads/SRP011999/SRS160202/SRX089168/SRR563937/SRR563937.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAKSWW-10A-01D ING_ALLSRG.PAKSWW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAKSWW10A-1_1pA	SRX089168		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAKSWW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAKSWW-10A-01D ING_ALLSRG.PAKSWW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101221_SN580_0035_A80Y1DABXX_7.bam	SRR563937	@dbgap@:reads/SRP011999/SRS160202/SRX089168/SRR563937/SRR563937.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAKSWW-60A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60A-01D	DNA	EFO	SRS259150	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAKSWW-60A-01D ING_ALLSRG.PAKSWW03A-2_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAKSWW03A-2_1pA	SRX099569		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAKSWW-60A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAKSWW-60A-01D ING_ALLSRG.PAKSWW03A-2_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101221_SN580_0035_A80Y1DABXX_5.bam	SRR566177	@dbgap@:reads/SRP011999/SRS259150/SRX099569/SRR566177/SRR566177.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANSHK-09A-01D TARGET-10-PANSHK-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	74.6725	TARGET-10-PANSHK-09A-01_EXCAP_1	SRX1274323		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANSHK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANSHK-09A-01D TARGET-10-PANSHK-09A-01_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJCOGALL010919_D2-TARGET-10-PANSHK-09A-01.bam	SRR2485474	@dbgap@:reads/SRP011999/SRS300853/SRX1274323/SRR2485474/SRR2485474.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANSHK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-10A-01D	DNA	EFO	SRS1080940	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANSHK-10A-01D TARGET-10-PANSHK-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	89.1197	TARGET-10-PANSHK-10A-01_EXCAP_1	SRX1274324		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANSHK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANSHK-10A-01D TARGET-10-PANSHK-10A-01_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJCOGALL010919_G4-TARGET-10-PANSHK-10A-01.bam	SRR2485475	@dbgap@:reads/SRP011999/SRS1080940/SRX1274324/SRR2485475/SRR2485475.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANSIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANSIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIZ-09A-01D	DNA	EFO	SRS880652	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANSIZ-09A-01D IL10734 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10734	SRX896810	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANSIZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANSIZ-09A-01D IL10734 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANSIZ-09A-01D_GATCAG.bam	SRR1825555	@dbgap@:reads/SRP011999/SRS880652/SRX896810/SRR1825555/SRR1825555.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANSIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANSIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIZ-14A-01D	DNA	EFO	SRS880682	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANSIZ-14A-01D IL10735 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL10735	SRX896780	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANSIZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANSIZ-14A-01D IL10735 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANSIZ-14A-01D_TAGCTT.bam	SRR1825556	@dbgap@:reads/SRP011999/SRS880682/SRX896780/SRR1825556/SRR1825556.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANSTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANSTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSTA-09A-01D	DNA	EFO	SRS880581	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANSTA-09A-01D IL10890 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10890	SRX896882	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANSTA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANSTA-09A-01D IL10890 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANSTA-09A-01D_GATCAG.bam	SRR1825557	@dbgap@:reads/SRP011999/SRS880581/SRX896882/SRR1825557/SRR1825557.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANSTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANSTA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSTA-14A-01D	DNA	EFO	SRS880503	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANSTA-14A-01D IL10891 library	PAIRED	GENOMIC	WXS	Hybrid Selection	178	26.7	IL10891	SRX896961	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANSTA-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANSTA-14A-01D IL10891 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANSTA-14A-01D_TAGCTT.bam	SRR1825558	@dbgap@:reads/SRP011999/SRS880503/SRX896961/SRR1825558/SRR1825558.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANSYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANSYA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSYA-09A-01D	DNA	EFO	SRS835465	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANSYA-09A-01D IL8139 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8139	SRX813871	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANSYA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANSYA-09A-01D IL8139 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANSYA-09A-01D_ATCACG.bam	SRR1730731	@dbgap@:reads/SRP011999/SRS835465/SRX813871/SRR1730731/SRR1730731.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANSYA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANSYA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSYA-10A-01D	DNA	EFO	SRS835475	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANSYA-10A-01D IL8140 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8140	SRX813888	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANSYA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANSYA-10A-01D IL8140 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANSYA-10A-01D_CGATGT.bam	SRR1730732	@dbgap@:reads/SRP011999/SRS835475/SRX813888/SRR1730732/SRR1730732.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTBB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTBB-09A-01D	DNA	EFO	SRS1080939	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANTBB-09A-01D TARGET-10-PANTBB-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	79.688	TARGET-10-PANTBB-09A-01_EXCAP_1	SRX1274325		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANTBB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANTBB-09A-01D TARGET-10-PANTBB-09A-01_EXCAP_1 run	sequencing assay	EFO	165	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001702_D1-TARGET-10-PANTBB-09A-01.bam	SRR2485476	@dbgap@:reads/SRP011999/SRS1080939/SRX1274325/SRR2485476/SRR2485476.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTBB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTBB-14A-01D	DNA	EFO	SRS1080938	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANTBB-14A-01D TARGET-10-PANTBB-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	61.477	TARGET-10-PANTBB-14A-01_EXCAP_1	SRX1274326		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANTBB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANTBB-14A-01D TARGET-10-PANTBB-14A-01_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001702_G1-TARGET-10-PANTBB-14A-01.bam	SRR2485477	@dbgap@:reads/SRP011999/SRS1080938/SRX1274326/SRR2485477/SRR2485477.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTCR-09A-01D	DNA	EFO	SRS880670	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTCR-09A-01D IL10882 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	26.4	IL10882	SRX896792	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTCR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTCR-09A-01D IL10882 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTCR-09A-01D_ATCACG.bam	SRR1825559	@dbgap@:reads/SRP011999/SRS880670/SRX896792/SRR1825559/SRR1825559.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTCR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTCR-10A-01D	DNA	EFO	SRS880585	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTCR-10A-01D IL10883 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	26.2	IL10883	SRX896878	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTCR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTCR-10A-01D IL10883 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTCR-10A-01D_CGATGT.bam	SRR1825560	@dbgap@:reads/SRP011999/SRS880585/SRX896878/SRR1825560/SRR1825560.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTLF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTLF-03A-01D	DNA	EFO	SRS835477	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTLF-03A-01D IL8147 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8147	SRX813891	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTLF-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTLF-03A-01D IL8147 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTLF-03A-01D_TAGCTT.bam	SRR1730733	@dbgap@:reads/SRP011999/SRS835477/SRX813891/SRR1730733/SRR1730733.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTLF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTLF-10A-01D	DNA	EFO	SRS835451	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTLF-10A-01D IL8148 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8148	SRX813859	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTLF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTLF-10A-01D IL8148 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTLF-10A-01D_GGCTAC.bam	SRR1730734	@dbgap@:reads/SRP011999/SRS835451/SRX813859/SRR1730734/SRR1730734.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTRY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTRY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTRY-09A-01D	DNA	EFO	SRS880644	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTRY-09A-01D IL10509 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10509	SRX896818	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTRY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTRY-09A-01D IL10509 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTRY-09A-01D_ATGTCA.bam	SRR1825462	@dbgap@:reads/SRP011999/SRS880644/SRX896818/SRR1825462/SRR1825462.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTRY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTRY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTRY-14A-01D	DNA	EFO	SRS880646	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTRY-14A-01D IL10510 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10510	SRX896816	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTRY-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTRY-14A-01D IL10510 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTRY-14A-01D_CCGTCC.bam	SRR1825463	@dbgap@:reads/SRP011999/SRS880646/SRX896816/SRR1825463/SRR1825463.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-03A-01D	DNA	EFO	SRS160203	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-03A-01D ING_ALLSRG.PANTSM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM03A-1_1pA	SRX089169		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-03A-01D ING_ALLSRG.PANTSM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101221_SN580_0035_A80Y1DABXX_8.bam	SRR564043	@dbgap@:reads/SRP011999/SRS160203/SRX089169/SRR564043/SRR564043.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-03A-01D	DNA	EFO	SRS160203	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-03A-01D ING_ALLSRG.PANTSM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM03A-1_1pA	SRX089169		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-03A-01D ING_ALLSRG.PANTSM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101221_SN580_0035_A80Y1DABXX_8.bam	SRR564043	@dbgap@:reads/SRP011999/SRS160203/SRX089169/SRR564043/SRR564043.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-03A-01D	DNA	EFO	SRS160203	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-03A-01D ING_ALLSRG.PANTSM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM03A-1_1pA	SRX089169		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-03A-01D ING_ALLSRG.PANTSM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101221_SN580_0035_A80Y1DABXX_8.bam	SRR564043	@dbgap@:reads/SRP011999/SRS160203/SRX089169/SRR564043/SRR564043.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-03A-01D	DNA	EFO	SRS160203	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-03A-01D ING_ALLSRG.PANTSM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM03A-1_1pA	SRX089169		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-03A-01D ING_ALLSRG.PANTSM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101221_SN580_0035_A80Y1DABXX_8.bam	SRR564043	@dbgap@:reads/SRP011999/SRS160203/SRX089169/SRR564043/SRR564043.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-04A-01D	DNA	EFO	SRS160204	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-04A-01D ING_ALLSRG.PANTSM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM04A-1_1pA	SRX089170		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-04A-01D ING_ALLSRG.PANTSM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_1.bam	SRR564016	@dbgap@:reads/SRP011999/SRS160204/SRX089170/SRR564016/SRR564016.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-04A-01D	DNA	EFO	SRS160204	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-04A-01D ING_ALLSRG.PANTSM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM04A-1_1pA	SRX089170		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-04A-01D ING_ALLSRG.PANTSM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_1.bam	SRR564016	@dbgap@:reads/SRP011999/SRS160204/SRX089170/SRR564016/SRR564016.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-04A-01D	DNA	EFO	SRS160204	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-04A-01D ING_ALLSRG.PANTSM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM04A-1_1pA	SRX089170		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-04A-01D ING_ALLSRG.PANTSM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_1.bam	SRR564016	@dbgap@:reads/SRP011999/SRS160204/SRX089170/SRR564016/SRR564016.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-04A-01D	DNA	EFO	SRS160204	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-04A-01D ING_ALLSRG.PANTSM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM04A-1_1pA	SRX089170		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-04A-01D ING_ALLSRG.PANTSM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_1.bam	SRR564016	@dbgap@:reads/SRP011999/SRS160204/SRX089170/SRR564016/SRR564016.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-14A-01D	DNA	EFO	SRS160205	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM14A-1_1pA	SRX089171		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_2.bam	SRR563579	@dbgap@:reads/SRP011999/SRS160205/SRX089171/SRR563579/SRR563579.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-14A-01D	DNA	EFO	SRS160205	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM14A-1_1pA	SRX089171		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_2.bam	SRR563579	@dbgap@:reads/SRP011999/SRS160205/SRX089171/SRR563579/SRR563579.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-14A-01D	DNA	EFO	SRS160205	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM14A-1_1pA	SRX089171		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_2.bam	SRR563579	@dbgap@:reads/SRP011999/SRS160205/SRX089171/SRR563579/SRR563579.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-14A-01D	DNA	EFO	SRS160205	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM14A-1_1pA	SRX089171		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_2.bam	SRR563579	@dbgap@:reads/SRP011999/SRS160205/SRX089171/SRR563579/SRR563579.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-14A-01D	DNA	EFO	SRS160205	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM14A-1_1pA	SRX089171		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_2.bam	SRR563579	@dbgap@:reads/SRP011999/SRS160205/SRX089171/SRR563579/SRR563579.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PANTSM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANTSM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTSM-14A-01D	DNA	EFO	SRS160205	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PANTSM14A-1_1pA	SRX089171		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PANTSM-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PANTSM-14A-01D ING_ALLSRG.PANTSM14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_2.bam	SRR563579	@dbgap@:reads/SRP011999/SRS160205/SRX089171/SRR563579/SRR563579.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PANTTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTB-09A-01D	DNA	EFO	SRS880561	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTTB-09A-01D IL10517 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10517	SRX896902	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTTB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTTB-09A-01D IL10517 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTTB-09A-01D_GAGTGG.bam	SRR1825464	@dbgap@:reads/SRP011999/SRS880561/SRX896902/SRR1825464/SRR1825464.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTB-14A-01D	DNA	EFO	SRS880680	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTTB-14A-01D IL10518 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL10518	SRX896781	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTTB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTTB-14A-01D IL10518 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTTB-14A-01D_GGTAGC.bam	SRR1825465	@dbgap@:reads/SRP011999/SRS880680/SRX896781/SRR1825465/SRR1825465.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTTD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTTD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTD-14A-01D	DNA	EFO	SRS880657	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTTD-14A-01D IL10526 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL10526	SRX896804	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTTD-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTTD-14A-01D IL10526 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTTD-14A-01D_CACTCA.bam	SRR1825466	@dbgap@:reads/SRP011999/SRS880657/SRX896804/SRR1825466/SRR1825466.sra	2	HG19						
TARGET-10-PANTUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTUZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTUZ-09A-01D	DNA	EFO	SRS880478	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTUZ-09A-01D IL10533 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL10533	SRX896985	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTUZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTUZ-09A-01D IL10533 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTUZ-09A-01D_CTATAC.bam	SRR1825467	@dbgap@:reads/SRP011999/SRS880478/SRX896985/SRR1825467/SRR1825467.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTUZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTUZ-14A-01D	DNA	EFO	SRS880501	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTUZ-14A-01D IL10534 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL10534	SRX896963	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTUZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTUZ-14A-01D IL10534 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTUZ-14A-01D_CTCAGA.bam	SRR1825468	@dbgap@:reads/SRP011999/SRS880501/SRX896963/SRR1825468/SRR1825468.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTVC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTVC-09A-01D	DNA	EFO	SRS880513	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTVC-09A-01D IL10541 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL10541	SRX896950	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTVC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTVC-09A-01D IL10541 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTVC-09A-01D_TCGAAG.bam	SRR1825469	@dbgap@:reads/SRP011999/SRS880513/SRX896950/SRR1825469/SRR1825469.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTVC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTVC-14A-01D	DNA	EFO	SRS880500	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTVC-14A-01D IL10542 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL10542	SRX896962	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTVC-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTVC-14A-01D IL10542 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTVC-14A-01D_TCGGCA.bam	SRR1825470	@dbgap@:reads/SRP011999/SRS880500/SRX896962/SRR1825470/SRR1825470.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTWC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTWC-09A-01D	DNA	EFO	SRS880674	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTWC-09A-01D IL10297 library	PAIRED	GENOMIC	WXS	Hybrid Selection	178	26.7	IL10297	SRX896788	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTWC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTWC-09A-01D IL10297 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTWC-09A-01D_CAGATC.bam	SRR1825377	@dbgap@:reads/SRP011999/SRS880674/SRX896788/SRR1825377/SRR1825377.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTWC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTWC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTWC-14A-01D	DNA	EFO	SRS880702	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTWC-14A-01D IL10298 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10298	SRX896761	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTWC-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTWC-14A-01D IL10298 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTWC-14A-01D_ACTTGA.bam	SRR1825378	@dbgap@:reads/SRP011999/SRS880702/SRX896761/SRR1825378/SRR1825378.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTXA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTXA-09A-01D	DNA	EFO	SRS880608	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTXA-09A-01D IL10305 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10305	SRX896855	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTXA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTXA-09A-01D IL10305 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTXA-09A-01D_ATGTCA.bam	SRR1825379	@dbgap@:reads/SRP011999/SRS880608/SRX896855/SRR1825379/SRR1825379.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTXA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTXA-14A-01D	DNA	EFO	SRS880705	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTXA-14A-01D IL10306 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10306	SRX896756	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTXA-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTXA-14A-01D IL10306 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTXA-14A-01D_CCGTCC.bam	SRR1825380	@dbgap@:reads/SRP011999/SRS880705/SRX896756/SRR1825380/SRR1825380.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTYP-09A-01D	DNA	EFO	SRS880648	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTYP-09A-01D IL10313 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10313	SRX896814	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTYP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTYP-09A-01D IL10313 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTYP-09A-01D_GAGTGG.bam	SRR1825381	@dbgap@:reads/SRP011999/SRS880648/SRX896814/SRR1825381/SRR1825381.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTYP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTYP-14A-01D	DNA	EFO	SRS880714	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTYP-14A-01D IL10314 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL10314	SRX896748	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTYP-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTYP-14A-01D IL10314 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTYP-14A-01D_GGTAGC.bam	SRR1825382	@dbgap@:reads/SRP011999/SRS880714/SRX896748/SRR1825382/SRR1825382.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTZE-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTZE-09B-01D	DNA	EFO	SRS880556	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTZE-09B-01D IL10321 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10321	SRX896907	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTZE-09B-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTZE-09B-01D IL10321 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTZE-09B-01D_CACGAT.bam	SRR1825383	@dbgap@:reads/SRP011999/SRS880556/SRX896907/SRR1825383/SRR1825383.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANTZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANTZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTZE-10A-01D	DNA	EFO	SRS880694	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANTZE-10A-01D IL10322 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10322	SRX896768	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANTZE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANTZE-10A-01D IL10322 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANTZE-10A-01D_CACTCA.bam	SRR1825384	@dbgap@:reads/SRP011999/SRS880694/SRX896768/SRR1825384/SRR1825384.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKF-09A-01D	DNA	EFO	SRS880614	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANUKF-09A-01D IL10362 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10362	SRX896847	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANUKF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANUKF-09A-01D IL10362 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANUKF-09A-01D_CAGATC.bam	SRR1825385	@dbgap@:reads/SRP011999/SRS880614/SRX896847/SRR1825385/SRR1825385.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUKF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKF-14A-01D	DNA	EFO	SRS880607	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANUKF-14A-01D IL10363 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10363	SRX896856	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANUKF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANUKF-14A-01D IL10363 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANUKF-14A-01D_ACTTGA.bam	SRR1825386	@dbgap@:reads/SRP011999/SRS880607/SRX896856/SRR1825386/SRR1825386.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANURR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANURR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURR-09A-01D	DNA	EFO	SRS880709	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANURR-09A-01D IL10368 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10368	SRX896753	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANURR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANURR-09A-01D IL10368 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANURR-09A-01D_ATGTCA.bam	SRR1825387	@dbgap@:reads/SRP011999/SRS880709/SRX896753/SRR1825387/SRR1825387.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANURR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANURR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURR-14A-01D	DNA	EFO	SRS880716	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANURR-14A-01D IL10369 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10369	SRX896746	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANURR-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANURR-14A-01D IL10369 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANURR-14A-01D_CCGTCC.bam	SRR1825388	@dbgap@:reads/SRP011999/SRS880716/SRX896746/SRR1825388/SRR1825388.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSL-09A-01D	DNA	EFO	SRS835461	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANUSL-09A-01D IL8155 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8155	SRX813875	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANUSL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANUSL-09A-01D IL8155 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANUSL-09A-01D_GTCCGC.bam	SRR1730735	@dbgap@:reads/SRP011999/SRS835461/SRX813875/SRR1730735/SRR1730735.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUSL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSL-14A-01D	DNA	EFO	SRS835467	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANUSL-14A-01D IL8156 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8156	SRX813876	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANUSL-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANUSL-14A-01D IL8156 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANUSL-14A-01D_GTGAAA.bam	SRR1730736	@dbgap@:reads/SRP011999/SRS835467/SRX813876/SRR1730736/SRR1730736.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUXS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUXS-09A-01D	DNA	EFO	SRS1080937	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANUXS-09A-01D TARGET-10-PANUXS-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	77.9962	TARGET-10-PANUXS-09A-01_EXCAP_1	SRX1274327		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANUXS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANUXS-09A-01D TARGET-10-PANUXS-09A-01_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001707_D1-TARGET-10-PANUXS-09A-01.bam	SRR2485478	@dbgap@:reads/SRP011999/SRS1080937/SRX1274327/SRR2485478/SRR2485478.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUXS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUXS-14A-01D	DNA	EFO	SRS1080936	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANUXS-14A-01D TARGET-10-PANUXS-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	160	60.1371	TARGET-10-PANUXS-14A-01_EXCAP_1	SRX1274328		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANUXS-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANUXS-14A-01D TARGET-10-PANUXS-14A-01_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001707_G3-TARGET-10-PANUXS-14A-01.bam	SRR2485479	@dbgap@:reads/SRP011999/SRS1080936/SRX1274328/SRR2485479/SRR2485479.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUXU-09A-01D	DNA	EFO	SRS880661	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANUXU-09A-01D IL10376 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10376	SRX896801	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANUXU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANUXU-09A-01D IL10376 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANUXU-09A-01D_GAGTGG.bam	SRR1825389	@dbgap@:reads/SRP011999/SRS880661/SRX896801/SRR1825389/SRR1825389.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUXU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUXU-14A-01D	DNA	EFO	SRS880684	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANUXU-14A-01D IL10377 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10377	SRX896777	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANUXU-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANUXU-14A-01D IL10377 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANUXU-14A-01D_GGTAGC.bam	SRR1825390	@dbgap@:reads/SRP011999/SRS880684/SRX896777/SRR1825390/SRR1825390.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUYZ-09A-01D	DNA	EFO	SRS880531	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANUYZ-09A-01D IL10384 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10384	SRX896932	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANUYZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANUYZ-09A-01D IL10384 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANUYZ-09A-01D_CACGAT.bam	SRR1825391	@dbgap@:reads/SRP011999/SRS880531/SRX896932/SRR1825391/SRR1825391.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANUYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANUYZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUYZ-14A-01D	DNA	EFO	SRS880658	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANUYZ-14A-01D IL10385 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10385	SRX896803	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANUYZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANUYZ-14A-01D IL10385 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANUYZ-14A-01D_CACTCA.bam	SRR1825392	@dbgap@:reads/SRP011999/SRS880658/SRX896803/SRR1825392/SRR1825392.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVAW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVAW-09A-01D	DNA	EFO	SRS835438	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVAW-09A-01D IL8163 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.2	IL8163	SRX813847	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVAW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVAW-09A-01D IL8163 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVAW-09A-01D_ATGAGC.bam	SRR1730737	@dbgap@:reads/SRP011999/SRS835438/SRX813847/SRR1730737/SRR1730737.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVAW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVAW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVAW-10A-01D	DNA	EFO	SRS835414	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVAW-10A-01D IL8164 library	PAIRED	GENOMIC	WXS	Hybrid Selection	217	29.4	IL8164	SRX813819	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVAW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVAW-10A-01D IL8164 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVAW-10A-01D_ATTCCT.bam	SRR1730738	@dbgap@:reads/SRP011999/SRS835414/SRX813819/SRR1730738/SRR1730738.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVCM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVCM-09A-01D	DNA	EFO	SRS880710	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVCM-09A-01D IL10390 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10390	SRX896752	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVCM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVCM-09A-01D IL10390 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVCM-09A-01D_CTATAC.bam	SRR1825393	@dbgap@:reads/SRP011999/SRS880710/SRX896752/SRR1825393/SRR1825393.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVCM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVCM-14A-01D	DNA	EFO	SRS880701	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVCM-14A-01D IL10391 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10391	SRX896760	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVCM-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVCM-14A-01D IL10391 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVCM-14A-01D_CTCAGA.bam	SRR1825394	@dbgap@:reads/SRP011999/SRS880701/SRX896760/SRR1825394/SRR1825394.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVDH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVDH-09A-01D	DNA	EFO	SRS880667	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVDH-09A-01D IL10398 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10398	SRX896793	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVDH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVDH-09A-01D IL10398 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVDH-09A-01D_TCGAAG.bam	SRR1825395	@dbgap@:reads/SRP011999/SRS880667/SRX896793/SRR1825395/SRR1825395.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVDH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVDH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVDH-14A-01D	DNA	EFO	SRS880717	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVDH-14A-01D IL10399 library	PAIRED	GENOMIC	WXS	Hybrid Selection	179	26.8	IL10399	SRX896745	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVDH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVDH-14A-01D IL10399 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVDH-14A-01D_TCGGCA.bam	SRR1825396	@dbgap@:reads/SRP011999/SRS880717/SRX896745/SRR1825396/SRR1825396.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVDV-09A-01D	DNA	EFO	SRS880547	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVDV-09A-01D IL10406 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10406	SRX896915	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVDV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVDV-09A-01D IL10406 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVDV-09A-01D_CAGATC.bam	SRR1825397	@dbgap@:reads/SRP011999/SRS880547/SRX896915/SRR1825397/SRR1825397.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVDV-14A-01D	DNA	EFO	SRS880669	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVDV-14A-01D IL10407 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10407	SRX896795	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVDV-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVDV-14A-01D IL10407 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVDV-14A-01D_ACTTGA.bam	SRR1825398	@dbgap@:reads/SRP011999/SRS880669/SRX896795/SRR1825398/SRR1825398.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVFF-09A-01D	DNA	EFO	SRS880643	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVFF-09A-01D IL10414 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10414	SRX896819	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVFF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVFF-09A-01D IL10414 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVFF-09A-01D_ATGTCA.bam	SRR1825399	@dbgap@:reads/SRP011999/SRS880643/SRX896819/SRR1825399/SRR1825399.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVFF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVFF-14A-01D	DNA	EFO	SRS880683	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVFF-14A-01D IL10415 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10415	SRX896779	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVFF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVFF-14A-01D IL10415 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVFF-14A-01D_CCGTCC.bam	SRR1825400	@dbgap@:reads/SRP011999/SRS880683/SRX896779/SRR1825400/SRR1825400.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVGZ-09A-01D	DNA	EFO	SRS1080935	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANVGZ-09A-01D TARGET-10-PANVGZ-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	57.3648	TARGET-10-PANVGZ-09A-01_EXCAP_1	SRX1274329		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANVGZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANVGZ-09A-01D TARGET-10-PANVGZ-09A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001739_D1-TARGET-10-PANVGZ-09A-01.bam	SRR2485480	@dbgap@:reads/SRP011999/SRS1080935/SRX1274329/SRR2485480/SRR2485480.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVGZ-10B	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVGZ-10B-01D	DNA	EFO	SRS1080933	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANVGZ-10B-01D TARGET-10-PANVGZ-10B-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	173	63.3933	TARGET-10-PANVGZ-10B-01_EXCAP_1	SRX1274330		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANVGZ-10B-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANVGZ-10B-01D TARGET-10-PANVGZ-10B-01_EXCAP_1 run	sequencing assay	EFO	183	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001739_G3-TARGET-10-PANVGZ-10B-01.bam	SRR2485481	@dbgap@:reads/SRP011999/SRS1080933/SRX1274330/SRR2485481/SRR2485481.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVIB-09A-01D	DNA	EFO	SRS891010	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVIB-09A-01D IL10937 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL10937	SRX975986	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVIB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVIB-09A-01D IL10937 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVIB-09A-01D_ATCACG.bam	SRR1949377	@dbgap@:reads/SRP011999/SRS891010/SRX975986/SRR1949377/SRR1949377.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVIB-14A-01D	DNA	EFO	SRS890975	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVIB-14A-01D IL10938 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL10938	SRX976017	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVIB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVIB-14A-01D IL10938 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVIB-14A-01D_CGATGT.bam	SRR1949378	@dbgap@:reads/SRP011999/SRS890975/SRX976017/SRR1949378/SRR1949378.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVIC-03A-01D	DNA	EFO	SRS835472	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVIC-03A-01D IL8171 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8171	SRX813881	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVIC-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVIC-03A-01D IL8171 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVIC-03A-01D_CATGGC.bam	SRR1730739	@dbgap@:reads/SRP011999/SRS835472/SRX813881/SRR1730739/SRR1730739.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVIC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVIC-14A-01D	DNA	EFO	SRS835430	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVIC-14A-01D IL8172 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.3	IL8172	SRX813838	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVIC-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVIC-14A-01D IL8172 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVIC-14A-01D_CATTTT.bam	SRR1730740	@dbgap@:reads/SRP011999/SRS835430/SRX813838/SRR1730740/SRR1730740.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVIX-09A-01D	DNA	EFO	SRS1080934	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANVIX-09A-01D TARGET-10-PANVIX-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	163	58.3686	TARGET-10-PANVIX-09A-01_EXCAP_1	SRX1274331		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANVIX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANVIX-09A-01D TARGET-10-PANVIX-09A-01_EXCAP_1 run	sequencing assay	EFO	180	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001704_D1-TARGET-10-PANVIX-09A-01.bam	SRR2485482	@dbgap@:reads/SRP011999/SRS1080934/SRX1274331/SRR2485482/SRR2485482.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVIX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVIX-10A-01D	DNA	EFO	SRS1080932	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANVIX-10A-01D TARGET-10-PANVIX-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	72.8839	TARGET-10-PANVIX-10A-01_EXCAP_1	SRX1274332		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANVIX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANVIX-10A-01D TARGET-10-PANVIX-10A-01_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001704_G1-TARGET-10-PANVIX-10A-01.bam	SRR2485483	@dbgap@:reads/SRP011999/SRS1080932/SRX1274332/SRR2485483/SRR2485483.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVJI-09A-01D	DNA	EFO	SRS835413	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVJI-09A-01D IL8179 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.3	IL8179	SRX813820	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVJI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVJI-09A-01D IL8179 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVJI-09A-01D_TAATCG.bam	SRR1730741	@dbgap@:reads/SRP011999/SRS835413/SRX813820/SRR1730741/SRR1730741.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVJI-10A-01D	DNA	EFO	SRS835533	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVJI-10A-01D IL8180 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8180	SRX813942	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVJI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVJI-10A-01D IL8180 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVJI-10A-01D_TACAGC.bam	SRR1730742	@dbgap@:reads/SRP011999/SRS835533/SRX813942/SRR1730742/SRR1730742.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVKF-09A-01D	DNA	EFO	SRS880488	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVKF-09A-01D IL10620 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10620	SRX896974	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVKF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVKF-09A-01D IL10620 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVKF-09A-01D_GTAGAG.bam	SRR1825561	@dbgap@:reads/SRP011999/SRS880488/SRX896974/SRR1825561/SRR1825561.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVKF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVKF-14A-01D	DNA	EFO	SRS880457	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVKF-14A-01D IL10621 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10621	SRX897005	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVKF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVKF-14A-01D IL10621 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVKF-14A-01D_GTCCGC.bam	SRR1825562	@dbgap@:reads/SRP011999/SRS880457/SRX897005/SRR1825562/SRR1825562.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVKH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVKH-09A-01D	DNA	EFO	SRS835540	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVKH-09A-01D IL8187 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.5	IL8187	SRX813947	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVKH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVKH-09A-01D IL8187 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVKH-09A-01D_CGATGT.bam	SRR1730743	@dbgap@:reads/SRP011999/SRS835540/SRX813947/SRR1730743/SRR1730743.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVKH-10A-01D	DNA	EFO	SRS835490	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVKH-10A-01D IL8188 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8188	SRX813898	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVKH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVKH-10A-01D IL8188 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVKH-10A-01D_TGACCA.bam	SRR1730744	@dbgap@:reads/SRP011999/SRS835490/SRX813898/SRR1730744/SRR1730744.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVMT-09A-01D	DNA	EFO	SRS835452	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVMT-09A-01D IL8195 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8195	SRX813862	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVMT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVMT-09A-01D IL8195 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVMT-09A-01D_GGCTAC.bam	SRR1730745	@dbgap@:reads/SRP011999/SRS835452/SRX813862/SRR1730745/SRR1730745.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVMT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVMT-14A-01D	DNA	EFO	SRS835456	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVMT-14A-01D IL8196 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8196	SRX813865	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVMT-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVMT-14A-01D IL8196 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVMT-14A-01D_CTTGTA.bam	SRR1730746	@dbgap@:reads/SRP011999/SRS835456/SRX813865/SRR1730746/SRR1730746.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVTB-09A-01D	DNA	EFO	SRS835521	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVTB-09A-01D IL8209 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8209	SRX813930	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVTB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVTB-09A-01D IL8209 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVTB-09A-01D_ATCACG.bam	SRR1730747	@dbgap@:reads/SRP011999/SRS835521/SRX813930/SRR1730747/SRR1730747.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVTB-09A-01D	DNA	EFO	SRS835521	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVTB-09A-01D IL8209 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8209	SRX813930	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVTB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVTB-09A-01D IL8209 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVTB-09A-01D_ATCACG_supp.bam	SRR2990556	@dbgap@:reads/SRP011999/SRS835521/SRX813930/SRR2990556/SRR2990556.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVTB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVTB-10A-01D	DNA	EFO	SRS835522	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVTB-10A-01D IL8210 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8210	SRX813931	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVTB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVTB-10A-01D IL8210 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVTB-10A-01D_CGATGT.bam	SRR1730748	@dbgap@:reads/SRP011999/SRS835522/SRX813931/SRR1730748/SRR1730748.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVUD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVUD-09A-01D	DNA	EFO	SRS1080931	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANVUD-09A-01D TARGET-10-PANVUD-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	73.1556	TARGET-10-PANVUD-09A-01_EXCAP_1	SRX1274333		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANVUD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANVUD-09A-01D TARGET-10-PANVUD-09A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001743_D1-TARGET-10-PANVUD-09A-01.bam	SRR2485484	@dbgap@:reads/SRP011999/SRS1080931/SRX1274333/SRR2485484/SRR2485484.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVUD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVUD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVUD-14A-01D	DNA	EFO	SRS1080929	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANVUD-14A-01D TARGET-10-PANVUD-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	169	66.7105	TARGET-10-PANVUD-14A-01_EXCAP_1	SRX1274334		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANVUD-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANVUD-14A-01D TARGET-10-PANVUD-14A-01_EXCAP_1 run	sequencing assay	EFO	178	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001743_G1-TARGET-10-PANVUD-14A-01.bam	SRR2485485	@dbgap@:reads/SRP011999/SRS1080929/SRX1274334/SRR2485485/SRR2485485.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVUU-09A-01D	DNA	EFO	SRS835500	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVUU-09A-01D IL8217 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8217	SRX813909	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVUU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVUU-09A-01D IL8217 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVUU-09A-01D_TAGCTT.bam	SRR1730749	@dbgap@:reads/SRP011999/SRS835500/SRX813909/SRR1730749/SRR1730749.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVUU-10A-01D	DNA	EFO	SRS835416	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVUU-10A-01D IL8218 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL8218	SRX813823	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVUU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVUU-10A-01D IL8218 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVUU-10A-01D_GGCTAC.bam	SRR1730750	@dbgap@:reads/SRP011999/SRS835416/SRX813823/SRR1730750/SRR1730750.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVXF-09A-01D	DNA	EFO	SRS880555	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVXF-09A-01D IL10612 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10612	SRX896908	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVXF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVXF-09A-01D IL10612 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVXF-09A-01D_GATCAG.bam	SRR1825563	@dbgap@:reads/SRP011999/SRS880555/SRX896908/SRR1825563/SRR1825563.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANVXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANVXF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVXF-14A-01D	DNA	EFO	SRS880497	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANVXF-14A-01D IL10613 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10613	SRX896965	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANVXF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANVXF-14A-01D IL10613 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANVXF-14A-01D_TAGCTT.bam	SRR1825564	@dbgap@:reads/SRP011999/SRS880497/SRX896965/SRR1825564/SRR1825564.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWDL-09A-01D	DNA	EFO	SRS835493	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWDL-09A-01D IL8225 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8225	SRX813902	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWDL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWDL-09A-01D IL8225 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWDL-09A-01D_GTCCGC.bam	SRR1730751	@dbgap@:reads/SRP011999/SRS835493/SRX813902/SRR1730751/SRR1730751.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWDL-10A-01D	DNA	EFO	SRS835409	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWDL-10A-01D IL8226 library	PAIRED	GENOMIC	WXS	Hybrid Selection	229	30.2	IL8226	SRX813817	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWDL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWDL-10A-01D IL8226 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWDL-10A-01D_GTGAAA.bam	SRR1730752	@dbgap@:reads/SRP011999/SRS835409/SRX813817/SRR1730752/SRR1730752.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWDN-09A-01D	DNA	EFO	SRS945068	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWDN-09A-01D IL12225 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL12225	SRX1037929	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWDN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWDN-09A-01D IL12225 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWDN-09A-01D_TAGCTT.bam	SRR2039512	@dbgap@:reads/SRP011999/SRS945068/SRX1037929/SRR2039512/SRR2039512.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWDN-14A-01D	DNA	EFO	SRS945067	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWDN-14A-01D IL12227 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL12227	SRX1037928	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWDN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWDN-14A-01D IL12227 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWDN-14A-01D_CTTGTA.bam	SRR2039513	@dbgap@:reads/SRP011999/SRS945067/SRX1037928/SRR2039513/SRR2039513.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWDS-09A-01D	DNA	EFO	SRS835480	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWDS-09A-01D IL8233 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8233	SRX813884	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWDS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWDS-09A-01D IL8233 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWDS-09A-01D_ATGAGC.bam	SRR1730753	@dbgap@:reads/SRP011999/SRS835480/SRX813884/SRR1730753/SRR1730753.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWDS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWDS-10A-01D	DNA	EFO	SRS835519	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWDS-10A-01D IL8234 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8234	SRX813929	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWDS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWDS-10A-01D IL8234 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWDS-10A-01D_ATTCCT.bam	SRR1730754	@dbgap@:reads/SRP011999/SRS835519/SRX813929/SRR1730754/SRR1730754.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWEI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEI-09A-01D	DNA	EFO	SRS835415	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWEI-09A-01D IL8141 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	28.9	IL8141	SRX813822	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWEI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWEI-09A-01D IL8141 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWEI-09A-01D_TGACCA.bam	SRR1730755	@dbgap@:reads/SRP011999/SRS835415/SRX813822/SRR1730755/SRR1730755.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEI-10A-01D	DNA	EFO	SRS835418	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWEI-10A-01D IL8142 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL8142	SRX813825	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWEI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWEI-10A-01D IL8142 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWEI-10A-01D_ACAGTG.bam	SRR1730756	@dbgap@:reads/SRP011999/SRS835418/SRX813825/SRR1730756/SRR1730756.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWES-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWES-09A-01D	DNA	EFO	SRS1080930	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWES-09A-01D TARGET-10-PANWES-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	66.2235	TARGET-10-PANWES-09A-01_EXCAP_1	SRX1274335		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWES-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWES-09A-01D TARGET-10-PANWES-09A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001740_D1-TARGET-10-PANWES-09A-01.bam	SRR2485486	@dbgap@:reads/SRP011999/SRS1080930/SRX1274335/SRR2485486/SRR2485486.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWES-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWES-10A-01D	DNA	EFO	SRS1080705	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWES-10A-01D TARGET-10-PANWES-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	73.1026	TARGET-10-PANWES-10A-01_EXCAP_1	SRX1274336		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWES-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWES-10A-01D TARGET-10-PANWES-10A-01_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001740_G1-TARGET-10-PANWES-10A-01.bam	SRR2485487	@dbgap@:reads/SRP011999/SRS1080705/SRX1274336/SRR2485487/SRR2485487.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWGG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWGG-09A-01D	DNA	EFO	SRS835457	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWGG-09A-01D IL8149 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8149	SRX813866	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWGG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWGG-09A-01D IL8149 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWGG-09A-01D_CTTGTA.bam	SRR1730757	@dbgap@:reads/SRP011999/SRS835457/SRX813866/SRR1730757/SRR1730757.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWGG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWGG-10A-01D	DNA	EFO	SRS835421	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWGG-10A-01D IL8150 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.5	IL8150	SRX813828	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWGG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWGG-10A-01D IL8150 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWGG-10A-01D_AGTCAA.bam	SRR1730758	@dbgap@:reads/SRP011999/SRS835421/SRX813828/SRR1730758/SRR1730758.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWIM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWIM-09A-01D	DNA	EFO	SRS945085	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWIM-09A-01D IL12221 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL12221	SRX1037910	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWIM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWIM-09A-01D IL12221 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWIM-09A-01D_GCCAAT.bam	SRR2039514	@dbgap@:reads/SRP011999/SRS945085/SRX1037910/SRR2039514/SRR2039514.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWIM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWIM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWIM-14A-01D	DNA	EFO	SRS880487	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWIM-14A-01D IL10605 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL10605	SRX896976	P8_B31	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWIM-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWIM-14A-01D IL10605 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWIM-14A-01D_CGATGT.bam	SRR1825565	@dbgap@:reads/SRP011999/SRS880487/SRX896976/SRR1825565/SRR1825565.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWJH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWJH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJH-09A-01D	DNA	EFO	SRS835502	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWJH-09A-01D IL8157 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8157	SRX813911	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWJH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWJH-09A-01D IL8157 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWJH-09A-01D_GTGGCC.bam	SRR1730759	@dbgap@:reads/SRP011999/SRS835502/SRX813911/SRR1730759/SRR1730759.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWJH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWJH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJH-10A-01D	DNA	EFO	SRS835468	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWJH-10A-01D IL8158 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8158	SRX813878	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWJH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWJH-10A-01D IL8158 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWJH-10A-01D_GTTTCG.bam	SRR1730760	@dbgap@:reads/SRP011999/SRS835468/SRX813878/SRR1730760/SRR1730760.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJM-09A-01D	DNA	EFO	SRS1080928	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWJM-09A-01D TARGET-10-PANWJM-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	67.1568	TARGET-10-PANWJM-09A-01_EXCAP_1	SRX1274337		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWJM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWJM-09A-01D TARGET-10-PANWJM-09A-01_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001705_D1-TARGET-10-PANWJM-09A-01.bam	SRR2485488	@dbgap@:reads/SRP011999/SRS1080928/SRX1274337/SRR2485488/SRR2485488.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJM-10A-01D	DNA	EFO	SRS1080927	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWJM-10A-01D TARGET-10-PANWJM-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	148	42.8737	TARGET-10-PANWJM-10A-01_EXCAP_1	SRX1274338		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWJM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWJM-10A-01D TARGET-10-PANWJM-10A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001705_G1-TARGET-10-PANWJM-10A-01.bam	SRR2485489	@dbgap@:reads/SRP011999/SRS1080927/SRX1274338/SRR2485489/SRR2485489.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWJR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJR-09A-01D	DNA	EFO	SRS835429	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWJR-09A-01D IL8165 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL8165	SRX813834	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWJR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWJR-09A-01D IL8165 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWJR-09A-01D_CAAAAG.bam	SRR1730761	@dbgap@:reads/SRP011999/SRS835429/SRX813834/SRR1730761/SRR1730761.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWJR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJR-10A-01D	DNA	EFO	SRS835410	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWJR-10A-01D IL8166 library	PAIRED	GENOMIC	WXS	Hybrid Selection	221	29.7	IL8166	SRX813818	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWJR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWJR-10A-01D IL8166 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWJR-10A-01D_CAACTA.bam	SRR1730762	@dbgap@:reads/SRP011999/SRS835410/SRX813818/SRR1730762/SRR1730762.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWJS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJS-09A-01D	DNA	EFO	SRS1080926	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWJS-09A-01D TARGET-10-PANWJS-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	74.6371	TARGET-10-PANWJS-09A-01_EXCAP_1	SRX1274339		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWJS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWJS-09A-01D TARGET-10-PANWJS-09A-01_EXCAP_1 run	sequencing assay	EFO	165	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001713_D1-TARGET-10-PANWJS-09A-01.bam	SRR2485490	@dbgap@:reads/SRP011999/SRS1080926/SRX1274339/SRR2485490/SRR2485490.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWJS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWJS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJS-10A-01D	DNA	EFO	SRS1080925	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWJS-10A-01D TARGET-10-PANWJS-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	60.3592	TARGET-10-PANWJS-10A-01_EXCAP_1	SRX1274340		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWJS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWJS-10A-01D TARGET-10-PANWJS-10A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001713_G1-TARGET-10-PANWJS-10A-01.bam	SRR2485491	@dbgap@:reads/SRP011999/SRS1080925/SRX1274340/SRR2485491/SRR2485491.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWKM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWKM-09A-01D	DNA	EFO	SRS880606	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWKM-09A-01D IL10726 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10726	SRX896858	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWKM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWKM-09A-01D IL10726 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWKM-09A-01D_ATCACG.bam	SRR1825566	@dbgap@:reads/SRP011999/SRS880606/SRX896858/SRR1825566/SRR1825566.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWKM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWKM-10A-01D	DNA	EFO	SRS880654	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWKM-10A-01D IL10727 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10727	SRX896808	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWKM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWKM-10A-01D IL10727 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWKM-10A-01D_CGATGT.bam	SRR1825567	@dbgap@:reads/SRP011999/SRS880654/SRX896808/SRR1825567/SRR1825567.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWKP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWKP-09A-01D	DNA	EFO	SRS1080924	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWKP-09A-01D TARGET-10-PANWKP-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	73.8709	TARGET-10-PANWKP-09A-01_EXCAP_1	SRX1274341		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWKP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWKP-09A-01D TARGET-10-PANWKP-09A-01_EXCAP_1 run	sequencing assay	EFO	165	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001717_D1-TARGET-10-PANWKP-09A-01.bam	SRR2485492	@dbgap@:reads/SRP011999/SRS1080924/SRX1274341/SRR2485492/SRR2485492.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWKP-10A-01D	DNA	EFO	SRS1080923	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWKP-10A-01D TARGET-10-PANWKP-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	62.3948	TARGET-10-PANWKP-10A-01_EXCAP_1	SRX1274342		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWKP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWKP-10A-01D TARGET-10-PANWKP-10A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001717_G1-TARGET-10-PANWKP-10A-01.bam	SRR2485493	@dbgap@:reads/SRP011999/SRS1080923/SRX1274342/SRR2485493/SRR2485493.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWLH-09A-01D	DNA	EFO	SRS891235	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWLH-09A-01D IL11599 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11599	SRX975759	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWLH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWLH-09A-01D IL11599 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWLH-09A-01D_CACCGG.bam	SRR1949567	@dbgap@:reads/SRP011999/SRS891235/SRX975759/SRR1949567/SRR1949567.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWLH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWLH-10A-01D	DNA	EFO	SRS835408	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWLH-10A-01D IL8174 library	PAIRED	GENOMIC	WXS	Hybrid Selection	229	30.2	IL8174	SRX813816	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWLH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWLH-10A-01D IL8174 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWLH-10A-01D_CGGAAT.bam	SRR1730763	@dbgap@:reads/SRP011999/SRS835408/SRX813816/SRR1730763/SRR1730763.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWSP-09A-01D	DNA	EFO	SRS1080922	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWSP-09A-01D TARGET-10-PANWSP-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	77.3426	TARGET-10-PANWSP-09A-01_EXCAP_1	SRX1274343		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWSP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWSP-09A-01D TARGET-10-PANWSP-09A-01_EXCAP_1 run	sequencing assay	EFO	189	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001725_D1-TARGET-10-PANWSP-09A-01.bam	SRR2485494	@dbgap@:reads/SRP011999/SRS1080922/SRX1274343/SRR2485494/SRR2485494.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWSP-10A-01D	DNA	EFO	SRS1080921	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWSP-10A-01D TARGET-10-PANWSP-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	64.5442	TARGET-10-PANWSP-10A-01_EXCAP_1	SRX1274344		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWSP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWSP-10A-01D TARGET-10-PANWSP-10A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001725_G1-TARGET-10-PANWSP-10A-01.bam	SRR2485495	@dbgap@:reads/SRP011999/SRS1080921/SRX1274344/SRR2485495/SRR2485495.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWWG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWWG-09A-01D	DNA	EFO	SRS835462	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWWG-09A-01D IL8181 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8181	SRX813874	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWWG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWWG-09A-01D IL8181 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWWG-09A-01D_TATAAT.bam	SRR1730764	@dbgap@:reads/SRP011999/SRS835462/SRX813874/SRR1730764/SRR1730764.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWWG-10A-01D	DNA	EFO	SRS835494	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWWG-10A-01D IL8182 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.8	IL8182	SRX813904	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWWG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWWG-10A-01D IL8182 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWWG-10A-01D_TCATTC.bam	SRR1730765	@dbgap@:reads/SRP011999/SRS835494/SRX813904/SRR1730765/SRR1730765.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWYH-09A-01D TARGET-10-PANWYH-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	177	69.0132	TARGET-10-PANWYH-09A-01_EXCAP_1	SRX1274345		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWYH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWYH-09A-01D TARGET-10-PANWYH-09A-01_EXCAP_1 run	sequencing assay	EFO	184	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001733_D1-TARGET-10-PANWYH-09A-01.bam	SRR2485496	@dbgap@:reads/SRP011999/SRS300872/SRX1274345/SRR2485496/SRR2485496.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWYH-10A-01D TARGET-10-PANWYH-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	61.5333	TARGET-10-PANWYH-10A-01_EXCAP_1	SRX1274346		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWYH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWYH-10A-01D TARGET-10-PANWYH-10A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001733_G1-TARGET-10-PANWYH-10A-01.bam	SRR2485497	@dbgap@:reads/SRP011999/SRS300873/SRX1274346/SRR2485497/SRR2485497.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYM-09A-01D	DNA	EFO	SRS1080920	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWYM-09A-01D TARGET-10-PANWYM-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	63.5393	TARGET-10-PANWYM-09A-01_EXCAP_1	SRX1274347		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWYM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWYM-09A-01D TARGET-10-PANWYM-09A-01_EXCAP_1 run	sequencing assay	EFO	181	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001737_D1-TARGET-10-PANWYM-09A-01.bam	SRR2485498	@dbgap@:reads/SRP011999/SRS1080920/SRX1274347/SRR2485498/SRR2485498.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYM-10A-01D	DNA	EFO	SRS1080919	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANWYM-10A-01D TARGET-10-PANWYM-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	163	59.9364	TARGET-10-PANWYM-10A-01_EXCAP_1	SRX1274348		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANWYM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANWYM-10A-01D TARGET-10-PANWYM-10A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001737_G1-TARGET-10-PANWYM-10A-01.bam	SRR2485499	@dbgap@:reads/SRP011999/SRS1080919/SRX1274348/SRR2485499/SRR2485499.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWZG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWZG-09A-01D	DNA	EFO	SRS835449	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWZG-09A-01D IL8189 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8189	SRX813860	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWZG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWZG-09A-01D IL8189 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWZG-09A-01D_ACAGTG.bam	SRR1730766	@dbgap@:reads/SRP011999/SRS835449/SRX813860/SRR1730766/SRR1730766.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANWZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANWZG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWZG-10A-01D	DNA	EFO	SRS835431	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANWZG-10A-01D IL8190 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.3	IL8190	SRX813840	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANWZG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANWZG-10A-01D IL8190 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANWZG-10A-01D_GCCAAT.bam	SRR1730767	@dbgap@:reads/SRP011999/SRS835431/SRX813840/SRR1730767/SRR1730767.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXAM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXAM-09A-01D	DNA	EFO	SRS835428	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXAM-09A-01D IL8197 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL8197	SRX813836	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXAM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXAM-09A-01D IL8197 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXAM-09A-01D_AGTCAA.bam	SRR1730768	@dbgap@:reads/SRP011999/SRS835428/SRX813836/SRR1730768/SRR1730768.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXAM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXAM-10A-01D	DNA	EFO	SRS835436	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXAM-10A-01D IL8198 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.2	IL8198	SRX813844	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXAM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXAM-10A-01D IL8198 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXAM-10A-01D_AGTTCC.bam	SRR1730769	@dbgap@:reads/SRP011999/SRS835436/SRX813844/SRR1730769/SRR1730769.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXCX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXCX-09A-01D	DNA	EFO	SRS835492	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXCX-09A-01D IL8211 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8211	SRX813901	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXCX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXCX-09A-01D IL8211 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXCX-09A-01D_TGACCA.bam	SRR1730770	@dbgap@:reads/SRP011999/SRS835492/SRX813901/SRR1730770/SRR1730770.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXCX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXCX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXCX-10A-01D	DNA	EFO	SRS835499	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXCX-10A-01D IL8212 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8212	SRX813908	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXCX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXCX-10A-01D IL8212 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXCX-10A-01D_ACAGTG.bam	SRR1730771	@dbgap@:reads/SRP011999/SRS835499/SRX813908/SRR1730771/SRR1730771.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXEE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXEE-09A-01D	DNA	EFO	SRS835427	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXEE-09A-01D IL8219 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL8219	SRX813835	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXEE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXEE-09A-01D IL8219 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXEE-09A-01D_CTTGTA.bam	SRR1730772	@dbgap@:reads/SRP011999/SRS835427/SRX813835/SRR1730772/SRR1730772.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXEE-10A-01D	DNA	EFO	SRS835484	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXEE-10A-01D IL8220 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8220	SRX813895	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXEE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXEE-10A-01D IL8220 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXEE-10A-01D_AGTCAA.bam	SRR1730773	@dbgap@:reads/SRP011999/SRS835484/SRX813895/SRR1730773/SRR1730773.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXGD-09A-01D	DNA	EFO	SRS835574	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXGD-09A-01D IL8227 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL8227	SRX813987	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXGD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXGD-09A-01D IL8227 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXGD-09A-01D_GTGGCC.bam	SRR1730774	@dbgap@:reads/SRP011999/SRS835574/SRX813987/SRR1730774/SRR1730774.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXGD-10A-01D	DNA	EFO	SRS835528	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXGD-10A-01D IL8228 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8228	SRX813936	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXGD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXGD-10A-01D IL8228 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXGD-10A-01D_GTTTCG.bam	SRR1730775	@dbgap@:reads/SRP011999/SRS835528/SRX813936/SRR1730775/SRR1730775.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXGM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXGM-09A-01D	DNA	EFO	SRS835455	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXGM-09A-01D IL8235 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8235	SRX813864	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXGM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXGM-09A-01D IL8235 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXGM-09A-01D_CAAAAG.bam	SRR1730776	@dbgap@:reads/SRP011999/SRS835455/SRX813864/SRR1730776/SRR1730776.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXGM-10A-01D	DNA	EFO	SRS835481	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXGM-10A-01D IL8236 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8236	SRX813893	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXGM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXGM-10A-01D IL8236 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXGM-10A-01D_CAACTA.bam	SRR1730777	@dbgap@:reads/SRP011999/SRS835481/SRX813893/SRR1730777/SRR1730777.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXLC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXLC-09A-01D	DNA	EFO	SRS835505	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXLC-09A-01D IL8143 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8143	SRX813912	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXLC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXLC-09A-01D IL8143 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXLC-09A-01D_GCCAAT.bam	SRR1730778	@dbgap@:reads/SRP011999/SRS835505/SRX813912/SRR1730778/SRR1730778.sra	2	HG19						
TARGET-10-PANXLC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXLC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXLC-10A-01D	DNA	EFO	SRS835503	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXLC-10A-01D IL8144 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8144	SRX813913	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXLC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXLC-10A-01D IL8144 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXLC-10A-01D_CAGATC.bam	SRR1730779	@dbgap@:reads/SRP011999/SRS835503/SRX813913/SRR1730779/SRR1730779.sra	2	HG19						
TARGET-10-PANXLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXLP-09A-01D	DNA	EFO	SRS835443	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXLP-09A-01D IL8151 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8151	SRX813854	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXLP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXLP-09A-01D IL8151 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXLP-09A-01D_AGTTCC.bam	SRR1730780	@dbgap@:reads/SRP011999/SRS835443/SRX813854/SRR1730780/SRR1730780.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXLP-10A-01D	DNA	EFO	SRS835541	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXLP-10A-01D IL8152 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.5	IL8152	SRX813949	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXLP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXLP-10A-01D IL8152 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXLP-10A-01D_ATGTCA.bam	SRR1730781	@dbgap@:reads/SRP011999/SRS835541/SRX813949/SRR1730781/SRR1730781.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXLR-09A-01D	DNA	EFO	SRS835531	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXLR-09A-01D IL8159 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8159	SRX813939	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXLR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXLR-09A-01D IL8159 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXLR-09A-01D_CGTACG.bam	SRR1730782	@dbgap@:reads/SRP011999/SRS835531/SRX813939/SRR1730782/SRR1730782.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXLR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXLR-10A-01D	DNA	EFO	SRS835439	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXLR-10A-01D IL8160 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.2	IL8160	SRX813848	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXLR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXLR-10A-01D IL8160 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXLR-10A-01D_GAGTGG.bam	SRR1730783	@dbgap@:reads/SRP011999/SRS835439/SRX813848/SRR1730783/SRR1730783.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXSF-09A-01D	DNA	EFO	SRS890942	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXSF-09A-01D IL10945 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL10945	SRX976050	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXSF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXSF-09A-01D IL10945 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXSF-09A-01D_GATCAG.bam	SRR1949379	@dbgap@:reads/SRP011999/SRS890942/SRX976050/SRR1949379/SRR1949379.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXSF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXSF-14A-01D	DNA	EFO	SRS890951	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXSF-14A-01D IL10946 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL10946	SRX976041	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXSF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXSF-14A-01D IL10946 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXSF-14A-01D_TAGCTT.bam	SRR1949380	@dbgap@:reads/SRP011999/SRS890951/SRX976041/SRR1949380/SRR1949380.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXTP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXTP-09A-01D	DNA	EFO	SRS890984	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXTP-09A-01D IL10953 library	PAIRED	GENOMIC	WXS	Hybrid Selection	217	29.5	IL10953	SRX976008	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXTP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXTP-09A-01D IL10953 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXTP-09A-01D_GTAGAG.bam	SRR1949381	@dbgap@:reads/SRP011999/SRS890984/SRX976008/SRR1949381/SRR1949381.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXTP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXTP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXTP-14A-01D	DNA	EFO	SRS890934	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXTP-14A-01D IL10954 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL10954	SRX976059	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXTP-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXTP-14A-01D IL10954 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXTP-14A-01D_GTCCGC.bam	SRR1949382	@dbgap@:reads/SRP011999/SRS890934/SRX976059/SRR1949382/SRR1949382.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXXD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXXD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXXD-09A-01D	DNA	EFO	SRS1080918	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANXXD-09A-01D TARGET-10-PANXXD-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	164	64.5966	TARGET-10-PANXXD-09A-01_EXCAP_1	SRX1274349		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANXXD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PANXXD-09A-01D TARGET-10-PANXXD-09A-01_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001601_D1-TARGET-10-PANXXD-09A-01.bam	SRR2485500	@dbgap@:reads/SRP011999/SRS1080918/SRX1274349/SRR2485500/SRR2485500.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXXD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXXD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXXD-14A-01D	DNA	EFO	SRS1080917	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANXXD-14A-01D TARGET-10-PANXXD-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	163	61.95	TARGET-10-PANXXD-14A-01_EXCAP_1	SRX1274350		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANXXD-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PANXXD-14A-01D TARGET-10-PANXXD-14A-01_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001601_G1-TARGET-10-PANXXD-14A-01.bam	SRR2485501	@dbgap@:reads/SRP011999/SRS1080917/SRX1274350/SRR2485501/SRR2485501.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXZK-09A-01D	DNA	EFO	SRS1080915	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANXZK-09A-01D TARGET-10-PANXZK-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	168	65.6587	TARGET-10-PANXZK-09A-01_EXCAP_1	SRX1274351		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANXZK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANXZK-09A-01D TARGET-10-PANXZK-09A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001828_D1-TARGET-10-PANXZK-09A-01.bam	SRR2485502	@dbgap@:reads/SRP011999/SRS1080915/SRX1274351/SRR2485502/SRR2485502.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXZK-10A-01D	DNA	EFO	SRS1080916	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANXZK-10A-01D TARGET-10-PANXZK-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	71.3777	TARGET-10-PANXZK-10A-01_EXCAP_1	SRX1274352		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANXZK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANXZK-10A-01D TARGET-10-PANXZK-10A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001828_G1-TARGET-10-PANXZK-10A-01.bam	SRR2485503	@dbgap@:reads/SRP011999/SRS1080916/SRX1274352/SRR2485503/SRR2485503.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXZX-09A-01D	DNA	EFO	SRS891000	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXZX-09A-01D IL11247 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11247	SRX976002	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXZX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXZX-09A-01D IL11247 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXZX-09A-01D_ATCACG.bam	SRR1949383	@dbgap@:reads/SRP011999/SRS891000/SRX976002/SRR1949383/SRR1949383.sra	2	HG19						
TARGET-10-PANXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANXZX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXZX-14A-01D	DNA	EFO	SRS890976	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANXZX-14A-01D IL11248 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11248	SRX976016	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANXZX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANXZX-14A-01D IL11248 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANXZX-14A-01D_CGATGT.bam	SRR1949384	@dbgap@:reads/SRP011999/SRS890976/SRX976016/SRR1949384/SRR1949384.sra	2	HG19						
TARGET-10-PANYDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYDL-09A-01D	DNA	EFO	SRS891011	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYDL-09A-01D IL11255 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11255	SRX975995	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYDL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYDL-09A-01D IL11255 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYDL-09A-01D_GATCAG.bam	SRR1949385	@dbgap@:reads/SRP011999/SRS891011/SRX975995/SRR1949385/SRR1949385.sra	2	HG19						
TARGET-10-PANYDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYDL-14A-01D	DNA	EFO	SRS890983	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYDL-14A-01D IL11256 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11256	SRX976010	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYDL-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYDL-14A-01D IL11256 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYDL-14A-01D_TAGCTT.bam	SRR1949386	@dbgap@:reads/SRP011999/SRS890983/SRX976010/SRR1949386/SRR1949386.sra	2	HG19						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANYGB-09A-01D TARGET-10-PANYGB-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	178	82.0304	TARGET-10-PANYGB-09A-01_EXCAP_1	SRX1274353		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANYGB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANYGB-09A-01D TARGET-10-PANYGB-09A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001793_D1-TARGET-10-PANYGB-09A-01.bam	SRR2485504	@dbgap@:reads/SRP011999/SRS300878/SRX1274353/SRR2485504/SRR2485504.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANYGB-14A-01D TARGET-10-PANYGB-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	164	66.4765	TARGET-10-PANYGB-14A-01_EXCAP_1	SRX1274354		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANYGB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PANYGB-14A-01D TARGET-10-PANYGB-14A-01_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001793_G1-TARGET-10-PANYGB-14A-01.bam	SRR2485505	@dbgap@:reads/SRP011999/SRS300879/SRX1274354/SRR2485505/SRR2485505.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANYHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYHB-03A-01D	DNA	EFO	SRS890986	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYHB-03A-01D IL11263 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11263	SRX976006	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYHB-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYHB-03A-01D IL11263 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYHB-03A-01D_GTAGAG.bam	SRR1949387	@dbgap@:reads/SRP011999/SRS890986/SRX976006/SRR1949387/SRR1949387.sra	2	HG19						
TARGET-10-PANYHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYHB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYHB-14A-01D	DNA	EFO	SRS890964	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYHB-14A-01D IL11264 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11264	SRX976027	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYHB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYHB-14A-01D IL11264 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYHB-14A-01D_GTCCGC.bam	SRR1949388	@dbgap@:reads/SRP011999/SRS890964/SRX976027/SRR1949388/SRR1949388.sra	2	HG19						
TARGET-10-PANYJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYJL-09A-01D	DNA	EFO	SRS890963	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYJL-09A-01D IL11271 library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	29.3	IL11271	SRX976029	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYJL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYJL-09A-01D IL11271 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYJL-09A-01D_ACTGAT.bam	SRR1949389	@dbgap@:reads/SRP011999/SRS890963/SRX976029/SRR1949389/SRR1949389.sra	2	HG19						
TARGET-10-PANYJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYJL-14A-01D	DNA	EFO	SRS890949	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYJL-14A-01D IL11272 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11272	SRX976044	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYJL-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYJL-14A-01D IL11272 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYJL-14A-01D_ATGAGC.bam	SRR1949390	@dbgap@:reads/SRP011999/SRS890949/SRX976044/SRR1949390/SRR1949390.sra	2	HG19						
TARGET-10-PANYJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYJV-09A-01D	DNA	EFO	SRS891030	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYJV-09A-01D IL11279 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11279	SRX975967	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYJV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYJV-09A-01D IL11279 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYJV-09A-01D_CAGGCG.bam	SRR1949391	@dbgap@:reads/SRP011999/SRS891030/SRX975967/SRR1949391/SRR1949391.sra	2	HG19						
TARGET-10-PANYJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYJV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYJV-14A-01D	DNA	EFO	SRS891090	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYJV-14A-01D IL11280 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11280	SRX975964	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYJV-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYJV-14A-01D IL11280 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYJV-14A-01D_CATGGC.bam	SRR1949392	@dbgap@:reads/SRP011999/SRS891090/SRX975964/SRR1949392/SRR1949392.sra	2	HG19						
TARGET-10-PANYXD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYXD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYXD-09A-01D	DNA	EFO	SRS891006	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYXD-09A-01D IL11287 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11287	SRX975990	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYXD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYXD-09A-01D IL11287 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYXD-09A-01D_GACGAC.bam	SRR1949393	@dbgap@:reads/SRP011999/SRS891006/SRX975990/SRR1949393/SRR1949393.sra	2	HG19						
TARGET-10-PANYXD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYXD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYXD-14A-01D	DNA	EFO	SRS891022	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYXD-14A-01D IL11288 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11288	SRX975975	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYXD-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYXD-14A-01D IL11288 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYXD-14A-01D_TAATCG.bam	SRR1949394	@dbgap@:reads/SRP011999/SRS891022/SRX975975/SRR1949394/SRR1949394.sra	2	HG19						
TARGET-10-PANYXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYXR-09A-01D	DNA	EFO	SRS891019	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYXR-09A-01D IL11295 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11295	SRX975978	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYXR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYXR-09A-01D IL11295 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYXR-09A-01D_ATCACG.bam	SRR1949395	@dbgap@:reads/SRP011999/SRS891019/SRX975978/SRR1949395/SRR1949395.sra	2	HG19						
TARGET-10-PANYXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANYXR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYXR-14A-01D	DNA	EFO	SRS891012	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYXR-14A-01D IL11296 library	PAIRED	GENOMIC	WXS	Hybrid Selection	220	29.7	IL11296	SRX975985	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYXR-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYXR-14A-01D IL11296 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYXR-14A-01D_CGATGT.bam	SRR1949396	@dbgap@:reads/SRP011999/SRS891012/SRX975985/SRR1949396/SRR1949396.sra	2	HG19						
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYZE-09A-01D IL8168 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL8168	SRX813837	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYZE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYZE-09A-01D IL8168 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYZE-09A-01D_CACGAT.bam	SRR1730784	@dbgap@:reads/SRP011999/SRS300883/SRX813837/SRR1730784/SRR1730784.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANYZE-14A-01D IL8167 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.2	IL8167	SRX813846	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANYZE-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANYZE-14A-01D IL8167 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANYZE-14A-01D_CACCGG.bam	SRR1730785	@dbgap@:reads/SRP011999/SRS300884/SRX813846/SRR1730785/SRR1730785.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZBR-09A-01D	DNA	EFO	SRS891031	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZBR-09A-01D IL11303 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11303	SRX975965	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZBR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZBR-09A-01D IL11303 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZBR-09A-01D_GATCAG.bam	SRR1949397	@dbgap@:reads/SRP011999/SRS891031/SRX975965/SRR1949397/SRR1949397.sra	2	HG19						
TARGET-10-PANZBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZBR-14A-01D	DNA	EFO	SRS891062	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZBR-14A-01D IL11304 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11304	SRX975968	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZBR-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZBR-14A-01D IL11304 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZBR-14A-01D_TAGCTT.bam	SRR1949398	@dbgap@:reads/SRP011999/SRS891062/SRX975968/SRR1949398/SRR1949398.sra	2	HG19						
TARGET-10-PANZBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZBY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZBY-03A-01D	DNA	EFO	SRS1080914	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANZBY-03A-01D TARGET-10-PANZBY-03A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	150	46.5758	TARGET-10-PANZBY-03A-01_EXCAP_1	SRX1274355		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANZBY-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PANZBY-03A-01D TARGET-10-PANZBY-03A-01_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001602_D1-TARGET-10-PANZBY-03A-01.bam	SRR2485506	@dbgap@:reads/SRP011999/SRS1080914/SRX1274355/SRR2485506/SRR2485506.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZBY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZBY-14A-01D	DNA	EFO	SRS1080912	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PANZBY-14A-01D TARGET-10-PANZBY-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	49.6585	TARGET-10-PANZBY-14A-01_EXCAP_1	SRX1274356		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PANZBY-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PANZBY-14A-01D TARGET-10-PANZBY-14A-01_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001602_G1-TARGET-10-PANZBY-14A-01.bam	SRR2485507	@dbgap@:reads/SRP011999/SRS1080912/SRX1274356/SRR2485507/SRR2485507.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZCF-09A-01D	DNA	EFO	SRS890981	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZCF-09A-01D IL11313 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11313	SRX976011	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZCF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZCF-09A-01D IL11313 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZCF-09A-01D_ATCACG.bam	SRR1949399	@dbgap@:reads/SRP011999/SRS890981/SRX976011/SRR1949399/SRR1949399.sra	2	HG19						
TARGET-10-PANZCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZCF-14A-01D	DNA	EFO	SRS890982	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZCF-14A-01D IL11314 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11314	SRX976009	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZCF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZCF-14A-01D IL11314 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZCF-14A-01D_CGATGT.bam	SRR1949400	@dbgap@:reads/SRP011999/SRS890982/SRX976009/SRR1949400/SRR1949400.sra	2	HG19						
TARGET-10-PANZEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZEG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZEG-03A-01D	DNA	EFO	SRS890937	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZEG-03A-01D IL10939 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL10939	SRX976055	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZEG-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZEG-03A-01D IL10939 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZEG-03A-01D_TTAGGC.bam	SRR1949401	@dbgap@:reads/SRP011999/SRS890937/SRX976055/SRR1949401/SRR1949401.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZEG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZEG-14A-01D	DNA	EFO	SRS890988	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZEG-14A-01D IL10940 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL10940	SRX976004	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZEG-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZEG-14A-01D IL10940 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZEG-14A-01D_TGACCA.bam	SRR1949402	@dbgap@:reads/SRP011999/SRS890988/SRX976004/SRR1949402/SRR1949402.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZFN-09A-01D	DNA	EFO	SRS890940	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZFN-09A-01D IL10947 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL10947	SRX976058	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZFN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZFN-09A-01D IL10947 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZFN-09A-01D_GGCTAC.bam	SRR1949403	@dbgap@:reads/SRP011999/SRS890940/SRX976058/SRR1949403/SRR1949403.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZFN-14A-01D	DNA	EFO	SRS890935	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZFN-14A-01D IL10948 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL10948	SRX976057	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZFN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZFN-14A-01D IL10948 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZFN-14A-01D_CTTGTA.bam	SRR1949404	@dbgap@:reads/SRP011999/SRS890935/SRX976057/SRR1949404/SRR1949404.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZGN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZGN-09A-01D	DNA	EFO	SRS890953	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZGN-09A-01D IL10955 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL10955	SRX976039	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZGN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZGN-09A-01D IL10955 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZGN-09A-01D_GTGAAA.bam	SRR1949405	@dbgap@:reads/SRP011999/SRS890953/SRX976039/SRR1949405/SRR1949405.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZGN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZGN-14A-01D	DNA	EFO	SRS890939	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZGN-14A-01D IL10956 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL10956	SRX976053	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZGN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZGN-14A-01D IL10956 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZGN-14A-01D_GTGGCC.bam	SRR1949406	@dbgap@:reads/SRP011999/SRS890939/SRX976053/SRR1949406/SRR1949406.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZPU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPU-09A-01D	DNA	EFO	SRS890946	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZPU-09A-01D IL11249 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11249	SRX976047	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZPU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZPU-09A-01D IL11249 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZPU-09A-01D_TTAGGC.bam	SRR1949407	@dbgap@:reads/SRP011999/SRS890946/SRX976047/SRR1949407/SRR1949407.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZPU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZPU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPU-14A-01D	DNA	EFO	SRS890948	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZPU-14A-01D IL11250 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11250	SRX976043	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZPU-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZPU-14A-01D IL11250 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZPU-14A-01D_TGACCA.bam	SRR1949408	@dbgap@:reads/SRP011999/SRS890948/SRX976043/SRR1949408/SRR1949408.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZSE-09A-01D	DNA	EFO	SRS835432	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZSE-09A-01D IL8175 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.3	IL8175	SRX813841	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZSE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZSE-09A-01D IL8175 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZSE-09A-01D_CTAGCT.bam	SRR1730786	@dbgap@:reads/SRP011999/SRS835432/SRX813841/SRR1730786/SRR1730786.sra	2	HG19						
TARGET-10-PANZSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZSE-10A-01D	DNA	EFO	SRS835507	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZSE-10A-01D IL8176 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8176	SRX813916	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZSE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZSE-10A-01D IL8176 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZSE-10A-01D_CTATAC.bam	SRR1730787	@dbgap@:reads/SRP011999/SRS835507/SRX813916/SRR1730787/SRR1730787.sra	2	HG19						
TARGET-10-PANZUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZUI-09A-01D	DNA	EFO	SRS835426	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZUI-09A-01D IL8183 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL8183	SRX813833	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZUI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZUI-09A-01D IL8183 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZUI-09A-01D_TCCCGA.bam	SRR1730788	@dbgap@:reads/SRP011999/SRS835426/SRX813833/SRR1730788/SRR1730788.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZUI-10A-01D	DNA	EFO	SRS835524	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZUI-10A-01D IL8184 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8184	SRX813933	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZUI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZUI-10A-01D IL8184 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZUI-10A-01D_TCGAAG.bam	SRR1730789	@dbgap@:reads/SRP011999/SRS835524/SRX813933/SRR1730789/SRR1730789.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZYY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZYY-09A-01D	DNA	EFO	SRS835536	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZYY-09A-01D IL8191 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8191	SRX813944	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZYY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZYY-09A-01D IL8191 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZYY-09A-01D_CAGATC.bam	SRR1730790	@dbgap@:reads/SRP011999/SRS835536/SRX813944/SRR1730790/SRR1730790.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZYY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZYY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZYY-10A-01D	DNA	EFO	SRS835425	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZYY-10A-01D IL8192 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.4	IL8192	SRX813832	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZYY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZYY-10A-01D IL8192 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZYY-10A-01D_ACTTGA.bam	SRR1730791	@dbgap@:reads/SRP011999/SRS835425/SRX813832/SRR1730791/SRR1730791.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZZI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZZI-09A-01D	DNA	EFO	SRS835483	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZZI-09A-01D IL8199 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8199	SRX813885	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZZI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZZI-09A-01D IL8199 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZZI-09A-01D_ATGTCA.bam	SRR1730792	@dbgap@:reads/SRP011999/SRS835483/SRX813885/SRR1730792/SRR1730792.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZZI-10A-01D	DNA	EFO	SRS891179	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZZI-10A-01D IL11604 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11604	SRX975812	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZZI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZZI-10A-01D IL11604 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZZI-10A-01D_CATTTT.bam	SRR1949568	@dbgap@:reads/SRP011999/SRS891179/SRX975812/SRR1949568/SRR1949568.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PANZZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PANZZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZZI-10A-01D	DNA	EFO	SRS891179	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PANZZI-10A-01D IL11604 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11604	SRX975812	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PANZZI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PANZZI-10A-01D IL11604 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PANZZI-10A-01D_CATTTT_supp.bam	SRR2990557	@dbgap@:reads/SRP011999/SRS891179/SRX975812/SRR2990557/SRR2990557.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPADT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPADT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPADT-09A-01D	DNA	EFO	SRS835459	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPADT-09A-01D IL8213 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8213	SRX813868	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPADT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPADT-09A-01D IL8213 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPADT-09A-01D_GCCAAT.bam	SRR1730793	@dbgap@:reads/SRP011999/SRS835459/SRX813868/SRR1730793/SRR1730793.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPADT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPADT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPADT-10A-01D	DNA	EFO	SRS891183	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPADT-10A-01D IL11608 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11608	SRX975808	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPADT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPADT-10A-01D IL11608 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPADT-10A-01D_CTATAC.bam	SRR1949569	@dbgap@:reads/SRP011999/SRS891183/SRX975808/SRR1949569/SRR1949569.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGB-09A-01D	DNA	EFO	SRS835564	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAGB-09A-01D IL8221 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.2	IL8221	SRX813976	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAGB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAGB-09A-01D IL8221 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAGB-09A-01D_AGTTCC.bam	SRR1730794	@dbgap@:reads/SRP011999/SRS835564/SRX813976/SRR1730794/SRR1730794.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGB-10A-01D	DNA	EFO	SRS835568	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAGB-10A-01D IL8222 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL8222	SRX813982	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAGB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAGB-10A-01D IL8222 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAGB-10A-01D_ATGTCA.bam	SRR1730795	@dbgap@:reads/SRP011999/SRS835568/SRX813982/SRR1730795/SRR1730795.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGF-09A-01D	DNA	EFO	SRS1080913	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPAGF-09A-01D TARGET-10-PAPAGF-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	179	83.3541	TARGET-10-PAPAGF-09A-01_EXCAP_1	SRX1274357		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPAGF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPAGF-09A-01D TARGET-10-PAPAGF-09A-01_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001826_D1-TARGET-10-PAPAGF-09A-01.bam	SRR2485508	@dbgap@:reads/SRP011999/SRS1080913/SRX1274357/SRR2485508/SRR2485508.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGF-10A-01D	DNA	EFO	SRS1080911	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPAGF-10A-01D TARGET-10-PAPAGF-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	168	68.9888	TARGET-10-PAPAGF-10A-01_EXCAP_1	SRX1274358		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPAGF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPAGF-10A-01D TARGET-10-PAPAGF-10A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001826_G1-TARGET-10-PAPAGF-10A-01.bam	SRR2485509	@dbgap@:reads/SRP011999/SRS1080911/SRX1274358/SRR2485509/SRR2485509.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-03A-01D	DNA	EFO	SRS160206	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-03A-01D ING_ALLSRG.PAPAGK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK03A-1_1pA	SRX089186		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-03A-01D ING_ALLSRG.PAPAGK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_1.bam	SRR563580	@dbgap@:reads/SRP011999/SRS160206/SRX089186/SRR563580/SRR563580.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-03A-01D	DNA	EFO	SRS160206	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-03A-01D ING_ALLSRG.PAPAGK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK03A-1_1pA	SRX089186		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-03A-01D ING_ALLSRG.PAPAGK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_1.bam	SRR563580	@dbgap@:reads/SRP011999/SRS160206/SRX089186/SRR563580/SRR563580.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-03A-01D	DNA	EFO	SRS160206	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-03A-01D ING_ALLSRG.PAPAGK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK03A-1_1pA	SRX089186		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-03A-01D ING_ALLSRG.PAPAGK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_1.bam	SRR563580	@dbgap@:reads/SRP011999/SRS160206/SRX089186/SRR563580/SRR563580.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-03A-01D	DNA	EFO	SRS160206	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-03A-01D ING_ALLSRG.PAPAGK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK03A-1_1pA	SRX089186		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-03A-01D ING_ALLSRG.PAPAGK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_1.bam	SRR563580	@dbgap@:reads/SRP011999/SRS160206/SRX089186/SRR563580/SRR563580.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-04A-01D ING_ALLSRG.PAPAGK04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK04A-1_1pA	SRX089155		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-04A-01D ING_ALLSRG.PAPAGK04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_3.bam	SRR563702	@dbgap@:reads/SRP011999/SRS160207/SRX089155/SRR563702/SRR563702.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-04A-01D ING_ALLSRG.PAPAGK04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK04A-1_1pA	SRX089155		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-04A-01D ING_ALLSRG.PAPAGK04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_3.bam	SRR563702	@dbgap@:reads/SRP011999/SRS160207/SRX089155/SRR563702/SRR563702.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-04A-01D ING_ALLSRG.PAPAGK04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK04A-1_1pA	SRX089155		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-04A-01D ING_ALLSRG.PAPAGK04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_3.bam	SRR563702	@dbgap@:reads/SRP011999/SRS160207/SRX089155/SRR563702/SRR563702.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-04A-01D ING_ALLSRG.PAPAGK04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK04A-1_1pA	SRX089155		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-04A-01D ING_ALLSRG.PAPAGK04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_3.bam	SRR563702	@dbgap@:reads/SRP011999/SRS160207/SRX089155/SRR563702/SRR563702.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-10A-01D	DNA	EFO	SRS160208	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK10A-1_1pA	SRX089187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_2.bam	SRR563578	@dbgap@:reads/SRP011999/SRS160208/SRX089187/SRR563578/SRR563578.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-10A-01D	DNA	EFO	SRS160208	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK10A-1_1pA	SRX089187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_2.bam	SRR563578	@dbgap@:reads/SRP011999/SRS160208/SRX089187/SRR563578/SRR563578.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-10A-01D	DNA	EFO	SRS160208	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK10A-1_1pA	SRX089187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_2.bam	SRR563578	@dbgap@:reads/SRP011999/SRS160208/SRX089187/SRR563578/SRR563578.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-10A-01D	DNA	EFO	SRS160208	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK10A-1_1pA	SRX089187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_2.bam	SRR563578	@dbgap@:reads/SRP011999/SRS160208/SRX089187/SRR563578/SRR563578.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-10A-01D	DNA	EFO	SRS160208	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK10A-1_1pA	SRX089187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_2.bam	SRR563578	@dbgap@:reads/SRP011999/SRS160208/SRX089187/SRR563578/SRR563578.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPAGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-10A-01D	DNA	EFO	SRS160208	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPAGK10A-1_1pA	SRX089187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPAGK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPAGK-10A-01D ING_ALLSRG.PAPAGK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_2.bam	SRR563578	@dbgap@:reads/SRP011999/SRS160208/SRX089187/SRR563578/SRR563578.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGS-09A-01D	DNA	EFO	SRS835470	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAGS-09A-01D IL8229 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8229	SRX813879	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAGS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAGS-09A-01D IL8229 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAGS-09A-01D_CGTACG.bam	SRR1730796	@dbgap@:reads/SRP011999/SRS835470/SRX813879/SRR1730796/SRR1730796.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGS-10A-01D	DNA	EFO	SRS835545	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAGS-10A-01D IL8230 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8230	SRX813954	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAGS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAGS-10A-01D IL8230 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAGS-10A-01D_GAGTGG.bam	SRR1730797	@dbgap@:reads/SRP011999/SRS835545/SRX813954/SRR1730797/SRR1730797.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGV-09A-01D	DNA	EFO	SRS835527	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAGV-09A-01D IL8237 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8237	SRX813937	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAGV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAGV-09A-01D IL8237 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAGV-09A-01D_CACCGG.bam	SRR1730798	@dbgap@:reads/SRP011999/SRS835527/SRX813937/SRR1730798/SRR1730798.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGV-10A-01D	DNA	EFO	SRS835479	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAGV-10A-01D IL8238 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8238	SRX813892	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAGV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAGV-10A-01D IL8238 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAGV-10A-01D_CACGAT.bam	SRR1730799	@dbgap@:reads/SRP011999/SRS835479/SRX813892/SRR1730799/SRR1730799.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGW-09A-01D	DNA	EFO	SRS1080910	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPAGW-09A-01D TARGET-10-PAPAGW-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	53.7506	TARGET-10-PAPAGW-09A-01_EXCAP_1	SRX1274359		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPAGW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPAGW-09A-01D TARGET-10-PAPAGW-09A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJPHALL020048_D2-TARGET-10-PAPAGW-09A-01.bam	SRR2485510	@dbgap@:reads/SRP011999/SRS1080910/SRX1274359/SRR2485510/SRR2485510.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAGW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGW-14A-01D	DNA	EFO	SRS1080909	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPAGW-14A-01D TARGET-10-PAPAGW-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	64.2405	TARGET-10-PAPAGW-14A-01_EXCAP_1	SRX1274360		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPAGW-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPAGW-14A-01D TARGET-10-PAPAGW-14A-01_EXCAP_1 run	sequencing assay	EFO	182	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJPHALL020048_G2-TARGET-10-PAPAGW-14A-01.bam	SRR2485511	@dbgap@:reads/SRP011999/SRS1080909/SRX1274360/SRR2485511/SRR2485511.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAKJ-09A-01D	DNA	EFO	SRS835565	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAKJ-09A-01D IL8145 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL8145	SRX813974	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAKJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAKJ-09A-01D IL8145 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAKJ-09A-01D_ACTTGA.bam	SRR1730800	@dbgap@:reads/SRP011999/SRS835565/SRX813974/SRR1730800/SRR1730800.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAKJ-10A-01D	DNA	EFO	SRS835485	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAKJ-10A-01D IL8146 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8146	SRX813887	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAKJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAKJ-10A-01D IL8146 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAKJ-10A-01D_GATCAG.bam	SRR1730801	@dbgap@:reads/SRP011999/SRS835485/SRX813887/SRR1730801/SRR1730801.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAMA-09A-01D	DNA	EFO	SRS835539	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAMA-09A-01D IL8153 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.5	IL8153	SRX813950	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAMA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAMA-09A-01D IL8153 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAMA-09A-01D_CCGTCC.bam	SRR1730802	@dbgap@:reads/SRP011999/SRS835539/SRX813950/SRR1730802/SRR1730802.sra	2	HG19						
TARGET-10-PAPAMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAMA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAMA-10A-01D	DNA	EFO	SRS835442	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAMA-10A-01D IL8154 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8154	SRX813853	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAMA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAMA-10A-01D IL8154 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAMA-10A-01D_GTAGAG.bam	SRR1730803	@dbgap@:reads/SRP011999/SRS835442/SRX813853/SRR1730803/SRR1730803.sra	2	HG19						
TARGET-10-PAPAMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAMH-09A-01D	DNA	EFO	SRS835476	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAMH-09A-01D IL8161 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8161	SRX813889	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAMH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAMH-09A-01D IL8161 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAMH-09A-01D_GGTAGC.bam	SRR1730804	@dbgap@:reads/SRP011999/SRS835476/SRX813889/SRR1730804/SRR1730804.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAMH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAMH-10A-01D	DNA	EFO	SRS835422	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAMH-10A-01D IL8162 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.4	IL8162	SRX813829	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAMH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAMH-10A-01D IL8162 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAMH-10A-01D_ACTGAT.bam	SRR1730805	@dbgap@:reads/SRP011999/SRS835422/SRX813829/SRR1730805/SRR1730805.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAMS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAMS-09A-01D	DNA	EFO	SRS1080908	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPAMS-09A-01D TARGET-10-PAPAMS-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	81.7303	TARGET-10-PAPAMS-09A-01_EXCAP_1	SRX1274361		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPAMS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPAMS-09A-01D TARGET-10-PAPAMS-09A-01_EXCAP_1 run	sequencing assay	EFO	186	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001807_D1-TARGET-10-PAPAMS-09A-01.bam	SRR2485512	@dbgap@:reads/SRP011999/SRS1080908/SRX1274361/SRR2485512/SRR2485512.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAMS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAMS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAMS-14A-01D	DNA	EFO	SRS1080907	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPAMS-14A-01D TARGET-10-PAPAMS-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	169	69.9875	TARGET-10-PAPAMS-14A-01_EXCAP_1	SRX1274362		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPAMS-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPAMS-14A-01D TARGET-10-PAPAMS-14A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001807_G3-TARGET-10-PAPAMS-14A-01.bam	SRR2485513	@dbgap@:reads/SRP011999/SRS1080907/SRX1274362/SRR2485513/SRR2485513.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPANB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPANB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPANB-09A-01D	DNA	EFO	SRS890979	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPANB-09A-01D IL11257 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11257	SRX976013	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPANB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPANB-09A-01D IL11257 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPANB-09A-01D_GGCTAC.bam	SRR1949409	@dbgap@:reads/SRP011999/SRS890979/SRX976013/SRR1949409/SRR1949409.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPANB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPANB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPANB-14A-01D	DNA	EFO	SRS890993	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPANB-14A-01D IL11258 library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	29.5	IL11258	SRX975998	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPANB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPANB-14A-01D IL11258 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPANB-14A-01D_CTTGTA.bam	SRR1949410	@dbgap@:reads/SRP011999/SRS890993/SRX975998/SRR1949410/SRR1949410.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAPC-09A-01D	DNA	EFO	SRS890933	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAPC-09A-01D IL11265 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11265	SRX976028	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAPC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAPC-09A-01D IL11265 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAPC-09A-01D_GTGAAA.bam	SRR1949411	@dbgap@:reads/SRP011999/SRS890933/SRX976028/SRR1949411/SRR1949411.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAPC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAPC-14A-01D	DNA	EFO	SRS890938	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAPC-14A-01D IL11266 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL11266	SRX976054	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAPC-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAPC-14A-01D IL11266 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAPC-14A-01D_GTGGCC.bam	SRR1949412	@dbgap@:reads/SRP011999/SRS890938/SRX976054/SRR1949412/SRR1949412.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAPX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAPX-09A-01D	DNA	EFO	SRS890947	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAPX-09A-01D IL11273 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11273	SRX976045	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAPX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAPX-09A-01D IL11273 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAPX-09A-01D_ATTCCT.bam	SRR1949413	@dbgap@:reads/SRP011999/SRS890947/SRX976045/SRR1949413/SRR1949413.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAPX-14A-01D	DNA	EFO	SRS890958	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAPX-14A-01D IL11274 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11274	SRX976034	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAPX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAPX-14A-01D IL11274 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAPX-14A-01D_CAAAAG.bam	SRR1949414	@dbgap@:reads/SRP011999/SRS890958/SRX976034/SRR1949414/SRR1949414.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPART	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPART-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPART-09A-01D	DNA	EFO	SRS891029	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPART-09A-01D IL11281 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11281	SRX975966	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPART-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPART-09A-01D IL11281 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPART-09A-01D_CATTTT.bam	SRR1949415	@dbgap@:reads/SRP011999/SRS891029/SRX975966/SRR1949415/SRR1949415.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPART	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPART-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPART-14A-01D	DNA	EFO	SRS891015	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPART-14A-01D IL11282 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11282	SRX975981	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPART-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPART-14A-01D IL11282 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPART-14A-01D_CCAACA.bam	SRR1949416	@dbgap@:reads/SRP011999/SRS891015/SRX975981/SRR1949416/SRR1949416.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAVR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAVR-09A-01D	DNA	EFO	SRS880498	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAVR-09A-01D IL10614 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10614	SRX896966	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAVR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAVR-09A-01D IL10614 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAVR-09A-01D_GGCTAC.bam	SRR1825568	@dbgap@:reads/SRP011999/SRS880498/SRX896966/SRR1825568/SRR1825568.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAVR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAVR-10A-01D	DNA	EFO	SRS880472	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAVR-10A-01D IL10615 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10615	SRX896991	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAVR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAVR-10A-01D IL10615 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAVR-10A-01D_CTTGTA.bam	SRR1825569	@dbgap@:reads/SRP011999/SRS880472/SRX896991/SRR1825569/SRR1825569.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXH-09A-01D	DNA	EFO	SRS891013	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAXH-09A-01D IL11289 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11289	SRX975984	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAXH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAXH-09A-01D IL11289 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAXH-09A-01D_TACAGC.bam	SRR1949417	@dbgap@:reads/SRP011999/SRS891013/SRX975984/SRR1949417/SRR1949417.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAXH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXH-14A-01D	DNA	EFO	SRS891009	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAXH-14A-01D IL11290 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11290	SRX975987	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAXH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAXH-14A-01D IL11290 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAXH-14A-01D_TATAAT.bam	SRR1949418	@dbgap@:reads/SRP011999/SRS891009/SRX975987/SRR1949418/SRR1949418.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAZA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAZA-09A-01D	DNA	EFO	SRS835433	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAZA-09A-01D IL8169 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.3	IL8169	SRX813839	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAZA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAZA-09A-01D IL8169 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAZA-09A-01D_CACTCA.bam	SRR1730806	@dbgap@:reads/SRP011999/SRS835433/SRX813839/SRR1730806/SRR1730806.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAZA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAZA-14A-01D	DNA	EFO	SRS835448	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAZA-14A-01D IL8170 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8170	SRX813857	P1_B1	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAZA-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAZA-14A-01D IL8170 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAZA-14A-01D_CAGGCG.bam	SRR1730807	@dbgap@:reads/SRP011999/SRS835448/SRX813857/SRR1730807/SRR1730807.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAZD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAZD-09A-01D	DNA	EFO	SRS835445	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAZD-09A-01D IL8177 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8177	SRX813852	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAZD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAZD-09A-01D IL8177 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAZD-09A-01D_CTCAGA.bam	SRR1730808	@dbgap@:reads/SRP011999/SRS835445/SRX813852/SRR1730808/SRR1730808.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPAZD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPAZD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAZD-14A-01D	DNA	EFO	SRS835523	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPAZD-14A-01D IL8178 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8178	SRX813932	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPAZD-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPAZD-14A-01D IL8178 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPAZD-14A-01D_GACGAC.bam	SRR1730809	@dbgap@:reads/SRP011999/SRS835523/SRX813932/SRR1730809/SRR1730809.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBAI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBAI-09A-01D	DNA	EFO	SRS880660	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBAI-09A-01D IL10742 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10742	SRX896800	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBAI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBAI-09A-01D IL10742 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBAI-09A-01D_GTAGAG.bam	SRR1825570	@dbgap@:reads/SRP011999/SRS880660/SRX896800/SRR1825570/SRR1825570.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBAI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBAI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBAI-10A-01D	DNA	EFO	SRS880591	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBAI-10A-01D IL10743 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10743	SRX896872	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBAI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBAI-10A-01D IL10743 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBAI-10A-01D_GTCCGC.bam	SRR1825571	@dbgap@:reads/SRP011999/SRS880591/SRX896872/SRR1825571/SRR1825571.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBAN-09A-01D	DNA	EFO	SRS880576	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBAN-09A-01D IL10750 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10750	SRX896887	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBAN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBAN-09A-01D IL10750 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBAN-09A-01D_ACTGAT.bam	SRR1825572	@dbgap@:reads/SRP011999/SRS880576/SRX896887/SRR1825572/SRR1825572.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBAN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBAN-14A-01D	DNA	EFO	SRS880552	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBAN-14A-01D IL10751 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10751	SRX896911	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBAN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBAN-14A-01D IL10751 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBAN-14A-01D_ATGAGC.bam	SRR1825573	@dbgap@:reads/SRP011999/SRS880552/SRX896911/SRR1825573/SRR1825573.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBCK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBCK-09A-01D	DNA	EFO	SRS835501	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBCK-09A-01D IL8185 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8185	SRX813910	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBCK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBCK-09A-01D IL8185 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBCK-09A-01D_TCGGCA.bam	SRR1730810	@dbgap@:reads/SRP011999/SRS835501/SRX813910/SRR1730810/SRR1730810.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBCK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBCK-10A-01D	DNA	EFO	SRS835583	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBCK-10A-01D IL8186 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	26.3	IL8186	SRX813998	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBCK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBCK-10A-01D IL8186 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBCK-10A-01D_ATCACG.bam	SRR1730811	@dbgap@:reads/SRP011999/SRS835583/SRX813998/SRR1730811/SRR1730811.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBLU-09A-01D	DNA	EFO	SRS880489	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBLU-09A-01D IL10606 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL10606	SRX896973	P8_B31	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBLU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBLU-09A-01D IL10606 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBLU-09A-01D_TTAGGC.bam	SRR1825574	@dbgap@:reads/SRP011999/SRS880489/SRX896973/SRR1825574/SRR1825574.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBLU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBLU-10A-01D	DNA	EFO	SRS880502	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBLU-10A-01D IL10607 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL10607	SRX896960	P8_B31	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBLU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBLU-10A-01D IL10607 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBLU-10A-01D_TGACCA.bam	SRR1825575	@dbgap@:reads/SRP011999/SRS880502/SRX896960/SRR1825575/SRR1825575.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBPC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBPC-09A-01D	DNA	EFO	SRS1080906	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPBPC-09A-01D TARGET-10-PAPBPC-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	160	52.3756	TARGET-10-PAPBPC-09A-01_EXCAP_1	SRX1274363		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPBPC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPBPC-09A-01D TARGET-10-PAPBPC-09A-01_EXCAP_1 run	sequencing assay	EFO	185	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001868_D1-TARGET-10-PAPBPC-09A-01.bam	SRR2485514	@dbgap@:reads/SRP011999/SRS1080906/SRX1274363/SRR2485514/SRR2485514.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBPC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBPC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBPC-10A-01D	DNA	EFO	SRS1080905	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPBPC-10A-01D TARGET-10-PAPBPC-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	54.878	TARGET-10-PAPBPC-10A-01_EXCAP_1	SRX1274364		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPBPC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPBPC-10A-01D TARGET-10-PAPBPC-10A-01_EXCAP_1 run	sequencing assay	EFO	186	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001868_G1-TARGET-10-PAPBPC-10A-01.bam	SRR2485515	@dbgap@:reads/SRP011999/SRS1080905/SRX1274364/SRR2485515/SRR2485515.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBVD-09A-01D	DNA	EFO	SRS1080904	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPBVD-09A-01D TARGET-10-PAPBVD-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	150	44.956	TARGET-10-PAPBVD-09A-01_EXCAP_1	SRX1274365		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPBVD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPBVD-09A-01D TARGET-10-PAPBVD-09A-01_EXCAP_1 run	sequencing assay	EFO	180	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001837_D1-TARGET-10-PAPBVD-09A-01.bam	SRR2485516	@dbgap@:reads/SRP011999/SRS1080904/SRX1274365/SRR2485516/SRR2485516.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBVD-10A-01D	DNA	EFO	SRS1080903	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPBVD-10A-01D TARGET-10-PAPBVD-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	154	51.5554	TARGET-10-PAPBVD-10A-01_EXCAP_1	SRX1274366		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPBVD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPBVD-10A-01D TARGET-10-PAPBVD-10A-01_EXCAP_1 run	sequencing assay	EFO	178	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001837_G1-TARGET-10-PAPBVD-10A-01.bam	SRR2485517	@dbgap@:reads/SRP011999/SRS1080903/SRX1274366/SRR2485517/SRR2485517.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBYM-09A-01D	DNA	EFO	SRS835437	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBYM-09A-01D IL8193 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.2	IL8193	SRX813845	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBYM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBYM-09A-01D IL8193 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBYM-09A-01D_GATCAG.bam	SRR1730812	@dbgap@:reads/SRP011999/SRS835437/SRX813845/SRR1730812/SRR1730812.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBYM-10A-01D	DNA	EFO	SRS835453	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBYM-10A-01D IL8194 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8194	SRX813861	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBYM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBYM-10A-01D IL8194 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBYM-10A-01D_TAGCTT.bam	SRR1730813	@dbgap@:reads/SRP011999/SRS835453/SRX813861/SRR1730813/SRR1730813.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBZW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZW-09A-01D	DNA	EFO	SRS835460	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBZW-09A-01D IL8201 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8201	SRX813869	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBZW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBZW-09A-01D IL8201 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBZW-09A-01D_GTAGAG.bam	SRR1730814	@dbgap@:reads/SRP011999/SRS835460/SRX813869/SRR1730814/SRR1730814.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPBZW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPBZW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZW-10A-01D	DNA	EFO	SRS835419	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPBZW-10A-01D IL8202 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL8202	SRX813826	P1_B2	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPBZW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPBZW-10A-01D IL8202 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPBZW-10A-01D_GTCCGC.bam	SRR1730815	@dbgap@:reads/SRP011999/SRS835419/SRX813826/SRR1730815/SRR1730815.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCED-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCED-09A-01D	DNA	EFO	SRS835544	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCED-09A-01D IL8215 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8215	SRX813953	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCED-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCED-09A-01D IL8215 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCED-09A-01D_ACTTGA.bam	SRR1730816	@dbgap@:reads/SRP011999/SRS835544/SRX813953/SRR1730816/SRR1730816.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCED-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCED-10A-01D	DNA	EFO	SRS835504	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCED-10A-01D IL8216 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8216	SRX813914	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCED-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCED-10A-01D IL8216 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCED-10A-01D_GATCAG.bam	SRR1730817	@dbgap@:reads/SRP011999/SRS835504/SRX813914/SRR1730817/SRR1730817.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCJR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCJR-09A-01D	DNA	EFO	SRS835506	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCJR-09A-01D IL8223 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8223	SRX813915	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCJR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCJR-09A-01D IL8223 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCJR-09A-01D_CCGTCC.bam	SRR1730818	@dbgap@:reads/SRP011999/SRS835506/SRX813915/SRR1730818/SRR1730818.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCJR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCJR-14A-01D	DNA	EFO	SRS835487	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCJR-14A-01D IL8224 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8224	SRX813896	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCJR-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCJR-14A-01D IL8224 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCJR-14A-01D_GTAGAG.bam	SRR1730819	@dbgap@:reads/SRP011999/SRS835487/SRX813896/SRR1730819/SRR1730819.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCNP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCNP-09A-01D	DNA	EFO	SRS835517	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCNP-09A-01D IL8231 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8231	SRX813924	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCNP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCNP-09A-01D IL8231 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCNP-09A-01D_GGTAGC.bam	SRR1730820	@dbgap@:reads/SRP011999/SRS835517/SRX813924/SRR1730820/SRR1730820.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCNP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCNP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCNP-10A-01D	DNA	EFO	SRS835547	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCNP-10A-01D IL8232 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8232	SRX813955	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCNP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCNP-10A-01D IL8232 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCNP-10A-01D_ACTGAT.bam	SRR1730821	@dbgap@:reads/SRP011999/SRS835547/SRX813955/SRR1730821/SRR1730821.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCPB-09A-01D	DNA	EFO	SRS835530	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCPB-09A-01D IL8239 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8239	SRX813940	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCPB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCPB-09A-01D IL8239 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCPB-09A-01D_CACTCA.bam	SRR1730822	@dbgap@:reads/SRP011999/SRS835530/SRX813940/SRR1730822/SRR1730822.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCPB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCPB-14A-01D	DNA	EFO	SRS835482	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCPB-14A-01D IL8240 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8240	SRX813894	P1_B3	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCPB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCPB-14A-01D IL8240 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCPB-14A-01D_CAGGCG.bam	SRR1730823	@dbgap@:reads/SRP011999/SRS835482/SRX813894/SRR1730823/SRR1730823.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCRD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCRD-09A-01D	DNA	EFO	SRS1080902	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPCRD-09A-01D TARGET-10-PAPCRD-09A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	63.2697	TARGET-10-PAPCRD-09A-01D_EXCAP_1	SRX1274367		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPCRD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPCRD-09A-01D TARGET-10-PAPCRD-09A-01D_EXCAP_1 run	sequencing assay	EFO	178	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001869_D1-TARGET-10-PAPCRD-09A-01D.bam	SRR2485518	@dbgap@:reads/SRP011999/SRS1080902/SRX1274367/SRR2485518/SRR2485518.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCRD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCRD-10A-01D	DNA	EFO	SRS1080901	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPCRD-10A-01D TARGET-10-PAPCRD-10A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	169	66.3736	TARGET-10-PAPCRD-10A-01D_EXCAP_1	SRX1274368		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPCRD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPCRD-10A-01D TARGET-10-PAPCRD-10A-01D_EXCAP_1 run	sequencing assay	EFO	179	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001869_G1-TARGET-10-PAPCRD-10A-01D.bam	SRR2485519	@dbgap@:reads/SRP011999/SRS1080901/SRX1274368/SRR2485519/SRR2485519.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCRJ-09A-01D	DNA	EFO	SRS1080900	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPCRJ-09A-01D TARGET-10-PAPCRJ-09A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	177	79.5022	TARGET-10-PAPCRJ-09A-01D_EXCAP_1	SRX1274369		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPCRJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPCRJ-09A-01D TARGET-10-PAPCRJ-09A-01D_EXCAP_1 run	sequencing assay	EFO	165	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001873_D1-TARGET-10-PAPCRJ-09A-01D.bam	SRR2485520	@dbgap@:reads/SRP011999/SRS1080900/SRX1274369/SRR2485520/SRR2485520.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCRJ-10A-01D	DNA	EFO	SRS1080899	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPCRJ-10A-01D TARGET-10-PAPCRJ-10A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	69.4323	TARGET-10-PAPCRJ-10A-01D_EXCAP_1	SRX1274370		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPCRJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPCRJ-10A-01D TARGET-10-PAPCRJ-10A-01D_EXCAP_1 run	sequencing assay	EFO	183	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001873_G1-TARGET-10-PAPCRJ-10A-01D.bam	SRR2485521	@dbgap@:reads/SRP011999/SRS1080899/SRX1274370/SRR2485521/SRR2485521.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCRU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCRU-03A-01D	DNA	EFO	SRS835469	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCRU-03A-01D IL8269 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8269	SRX813877	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCRU-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCRU-03A-01D IL8269 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCRU-03A-01D_ATCACG.bam	SRR1730824	@dbgap@:reads/SRP011999/SRS835469/SRX813877/SRR1730824/SRR1730824.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCRU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCRU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCRU-10A-01D	DNA	EFO	SRS835463	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCRU-10A-01D IL8270 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8270	SRX813872	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCRU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCRU-10A-01D IL8270 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCRU-10A-01D_CGATGT.bam	SRR1730825	@dbgap@:reads/SRP011999/SRS835463/SRX813872/SRR1730825/SRR1730825.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCSZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCSZ-09A-01D	DNA	EFO	SRS1080898	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPCSZ-09A-01D TARGET-10-PAPCSZ-09A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	66.3895	TARGET-10-PAPCSZ-09A-01D_EXCAP_1	SRX1274371		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPCSZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPCSZ-09A-01D TARGET-10-PAPCSZ-09A-01D_EXCAP_1 run	sequencing assay	EFO	182	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001881_D1-TARGET-10-PAPCSZ-09A-01D.bam	SRR2485522	@dbgap@:reads/SRP011999/SRS1080898/SRX1274371/SRR2485522/SRR2485522.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCSZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCSZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCSZ-10A-01D	DNA	EFO	SRS1080897	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPCSZ-10A-01D TARGET-10-PAPCSZ-10A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	68.7599	TARGET-10-PAPCSZ-10A-01D_EXCAP_1	SRX1274372		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPCSZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPCSZ-10A-01D TARGET-10-PAPCSZ-10A-01D_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001881_G1-TARGET-10-PAPCSZ-10A-01D.bam	SRR2485523	@dbgap@:reads/SRP011999/SRS1080897/SRX1274372/SRR2485523/SRR2485523.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUI-09A-01D	DNA	EFO	SRS1080896	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPCUI-09A-01D TARGET-10-PAPCUI-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	153	51.9797	TARGET-10-PAPCUI-09A-01_EXCAP_1	SRX1274373		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPCUI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPCUI-09A-01D TARGET-10-PAPCUI-09A-01_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001838_D1-TARGET-10-PAPCUI-09A-01.bam	SRR2485524	@dbgap@:reads/SRP011999/SRS1080896/SRX1274373/SRR2485524/SRR2485524.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUI-10A-01D	DNA	EFO	SRS1080895	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPCUI-10A-01D TARGET-10-PAPCUI-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	54.2917	TARGET-10-PAPCUI-10A-01_EXCAP_1	SRX1274374		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPCUI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPCUI-10A-01D TARGET-10-PAPCUI-10A-01_EXCAP_1 run	sequencing assay	EFO	179	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001838_G1-TARGET-10-PAPCUI-10A-01.bam	SRR2485525	@dbgap@:reads/SRP011999/SRS1080895/SRX1274374/SRR2485525/SRR2485525.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVI-09A-01D	DNA	EFO	SRS835471	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCVI-09A-01D IL8277 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8277	SRX813880	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCVI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCVI-09A-01D IL8277 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCVI-09A-01D_TAGCTT.bam	SRR1730826	@dbgap@:reads/SRP011999/SRS835471/SRX813880/SRR1730826/SRR1730826.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVI-10A-01D	DNA	EFO	SRS835526	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCVI-10A-01D IL8278 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8278	SRX813935	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCVI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCVI-10A-01D IL8278 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCVI-10A-01D_GGCTAC.bam	SRR1730827	@dbgap@:reads/SRP011999/SRS835526/SRX813935/SRR1730827/SRR1730827.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCVR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVR-09A-01D	DNA	EFO	SRS835423	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCVR-09A-01D IL8285 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.4	IL8285	SRX813831	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCVR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCVR-09A-01D IL8285 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCVR-09A-01D_GTCCGC.bam	SRR1730828	@dbgap@:reads/SRP011999/SRS835423/SRX813831/SRR1730828/SRR1730828.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPCVR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVR-10A-01D	DNA	EFO	SRS835458	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPCVR-10A-01D IL8286 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8286	SRX813867	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPCVR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPCVR-10A-01D IL8286 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPCVR-10A-01D_GTGAAA.bam	SRR1730829	@dbgap@:reads/SRP011999/SRS835458/SRX813867/SRR1730829/SRR1730829.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDBX-09A-01D	DNA	EFO	SRS1080894	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPDBX-09A-01D TARGET-10-PAPDBX-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	50.2976	TARGET-10-PAPDBX-09A-01_EXCAP_1	SRX1274375		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPDBX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPDBX-09A-01D TARGET-10-PAPDBX-09A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001850_D1-TARGET-10-PAPDBX-09A-01.bam	SRR2485526	@dbgap@:reads/SRP011999/SRS1080894/SRX1274375/SRR2485526/SRR2485526.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDBX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDBX-14A-01D	DNA	EFO	SRS1080706	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPDBX-14A-01D TARGET-10-PAPDBX-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	146	45.3514	TARGET-10-PAPDBX-14A-01_EXCAP_1	SRX1274376		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPDBX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPDBX-14A-01D TARGET-10-PAPDBX-14A-01_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001850_G1-TARGET-10-PAPDBX-14A-01.bam	SRR2485527	@dbgap@:reads/SRP011999/SRS1080706/SRX1274376/SRR2485527/SRR2485527.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDCS-09A-01D	DNA	EFO	SRS835435	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDCS-09A-01D IL8293 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.2	IL8293	SRX813842	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDCS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDCS-09A-01D IL8293 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDCS-09A-01D_ATGAGC.bam	SRR1730830	@dbgap@:reads/SRP011999/SRS835435/SRX813842/SRR1730830/SRR1730830.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDCS-10A-01D	DNA	EFO	SRS835515	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDCS-10A-01D IL8294 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8294	SRX813928	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDCS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDCS-10A-01D IL8294 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDCS-10A-01D_ATTCCT.bam	SRR1730831	@dbgap@:reads/SRP011999/SRS835515/SRX813928/SRR1730831/SRR1730831.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDDA-09A-01D	DNA	EFO	SRS835535	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDDA-09A-01D IL8648 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8648	SRX813945	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDDA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDDA-09A-01D IL8648 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDDA-09A-01D_ATCACG.bam	SRR1730832	@dbgap@:reads/SRP011999/SRS835535/SRX813945/SRR1730832/SRR1730832.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDDA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDDA-10A-01D	DNA	EFO	SRS835546	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDDA-10A-01D IL8649 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8649	SRX813956	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDDA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDDA-10A-01D IL8649 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDDA-10A-01D_CGATGT.bam	SRR1730833	@dbgap@:reads/SRP011999/SRS835546/SRX813956/SRR1730833/SRR1730833.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDFS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFS-09A-01D	DNA	EFO	SRS835520	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDFS-09A-01D IL8656 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8656	SRX813927	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDFS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDFS-09A-01D IL8656 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDFS-09A-01D_TAGCTT.bam	SRR1730834	@dbgap@:reads/SRP011999/SRS835520/SRX813927/SRR1730834/SRR1730834.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDFS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDFS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFS-10A-01D	DNA	EFO	SRS835575	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDFS-10A-01D IL8657 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL8657	SRX813986	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDFS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDFS-10A-01D IL8657 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDFS-10A-01D_GGCTAC.bam	SRR1730835	@dbgap@:reads/SRP011999/SRS835575/SRX813986/SRR1730835/SRR1730835.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDHA-09A-01D	DNA	EFO	SRS835486	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDHA-09A-01D IL8664 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8664	SRX813890	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDHA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDHA-09A-01D IL8664 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDHA-09A-01D_GTCCGC.bam	SRR1730836	@dbgap@:reads/SRP011999/SRS835486/SRX813890/SRR1730836/SRR1730836.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDHA-10A-01D	DNA	EFO	SRS835562	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDHA-10A-01D IL8665 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8665	SRX813972	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDHA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDHA-10A-01D IL8665 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDHA-10A-01D_GTGAAA.bam	SRR1730837	@dbgap@:reads/SRP011999/SRS835562/SRX813972/SRR1730837/SRR1730837.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKD-09A-01D	DNA	EFO	SRS835491	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDKD-09A-01D IL8670 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8670	SRX813900	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDKD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDKD-09A-01D IL8670 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDKD-09A-01D_ATGAGC.bam	SRR1730838	@dbgap@:reads/SRP011999/SRS835491/SRX813900/SRR1730838/SRR1730838.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDKD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKD-10A-01D	DNA	EFO	SRS835555	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDKD-10A-01D IL8671 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8671	SRX813965	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDKD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDKD-10A-01D IL8671 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDKD-10A-01D_ATTCCT.bam	SRR1730839	@dbgap@:reads/SRP011999/SRS835555/SRX813965/SRR1730839/SRR1730839.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDKR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKR-09A-01D	DNA	EFO	SRS835474	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDKR-09A-01D IL8690 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8690	SRX813886	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDKR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDKR-09A-01D IL8690 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDKR-09A-01D_ATCACG.bam	SRR1730840	@dbgap@:reads/SRP011999/SRS835474/SRX813886/SRR1730840/SRR1730840.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDKR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKR-10A-01D	DNA	EFO	SRS835537	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDKR-10A-01D IL8691 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.5	IL8691	SRX813946	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDKR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDKR-10A-01D IL8691 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDKR-10A-01D_CGATGT.bam	SRR1730841	@dbgap@:reads/SRP011999/SRS835537/SRX813946/SRR1730841/SRR1730841.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDLN-09A-01D	DNA	EFO	SRS835525	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDLN-09A-01D IL8698 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8698	SRX813934	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDLN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDLN-09A-01D IL8698 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDLN-09A-01D_TAGCTT.bam	SRR1730842	@dbgap@:reads/SRP011999/SRS835525/SRX813934/SRR1730842/SRR1730842.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDLN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDLN-14A-01D	DNA	EFO	SRS835450	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDLN-14A-01D IL8699 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8699	SRX813858	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDLN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDLN-14A-01D IL8699 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDLN-14A-01D_GGCTAC.bam	SRR1730843	@dbgap@:reads/SRP011999/SRS835450/SRX813858/SRR1730843/SRR1730843.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDMU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDMU-09A-01D	DNA	EFO	SRS835559	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDMU-09A-01D IL8706 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8706	SRX813970	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDMU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDMU-09A-01D IL8706 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDMU-09A-01D_GTCCGC.bam	SRR1730844	@dbgap@:reads/SRP011999/SRS835559/SRX813970/SRR1730844/SRR1730844.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDMU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDMU-10A-01D	DNA	EFO	SRS835529	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDMU-10A-01D IL8707 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8707	SRX813938	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDMU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDMU-10A-01D IL8707 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDMU-10A-01D_GTGAAA.bam	SRR1730845	@dbgap@:reads/SRP011999/SRS835529/SRX813938/SRR1730845/SRR1730845.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDRP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDRP-09A-01D	DNA	EFO	SRS1080893	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPDRP-09A-01D TARGET-10-PAPDRP-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	153	47.4478	TARGET-10-PAPDRP-09A-01_EXCAP_1	SRX1274377		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPDRP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPDRP-09A-01D TARGET-10-PAPDRP-09A-01_EXCAP_1 run	sequencing assay	EFO	181	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001847_D1-TARGET-10-PAPDRP-09A-01.bam	SRR2485528	@dbgap@:reads/SRP011999/SRS1080893/SRX1274377/SRR2485528/SRR2485528.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDRP-10A-01D	DNA	EFO	SRS1080707	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPDRP-10A-01D TARGET-10-PAPDRP-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	153	48.4877	TARGET-10-PAPDRP-10A-01_EXCAP_1	SRX1274378		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPDRP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPDRP-10A-01D TARGET-10-PAPDRP-10A-01_EXCAP_1 run	sequencing assay	EFO	180	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001847_G1-TARGET-10-PAPDRP-10A-01.bam	SRR2485529	@dbgap@:reads/SRP011999/SRS1080707/SRX1274378/SRR2485529/SRR2485529.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDSW-09A-01D	DNA	EFO	SRS835561	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDSW-09A-01D IL8714 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8714	SRX813969	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDSW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDSW-09A-01D IL8714 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDSW-09A-01D_ATGAGC.bam	SRR1730846	@dbgap@:reads/SRP011999/SRS835561/SRX813969/SRR1730846/SRR1730846.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDSW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDSW-10A-01D	DNA	EFO	SRS835577	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDSW-10A-01D IL8715 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27	IL8715	SRX813989	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDSW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDSW-10A-01D IL8715 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDSW-10A-01D_ATTCCT.bam	SRR1730847	@dbgap@:reads/SRP011999/SRS835577/SRX813989/SRR1730847/SRR1730847.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDUV-09A-01D IL8271 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8271	SRX813961	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDUV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDUV-09A-01D IL8271 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDUV-09A-01D_TGACCA.bam	SRR1730848	@dbgap@:reads/SRP011999/SRS300904/SRX813961/SRR1730848/SRR1730848.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDUV-10A-01D IL8272 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL8272	SRX813981	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDUV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDUV-10A-01D IL8272 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDUV-10A-01D_ACAGTG.bam	SRR1730849	@dbgap@:reads/SRP011999/SRS300905/SRX813981/SRR1730849/SRR1730849.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDUX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUX-09A-01D	DNA	EFO	SRS945069	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDUX-09A-01D IL12229 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL12229	SRX1037927	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDUX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDUX-09A-01D IL12229 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDUX-09A-01D_AGTTCC.bam	SRR2039515	@dbgap@:reads/SRP011999/SRS945069/SRX1037927/SRR2039515/SRR2039515.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDUX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDUX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUX-14A-01D	DNA	EFO	SRS945070	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDUX-14A-01D IL12231 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL12231	SRX1037926	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDUX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDUX-14A-01D IL12231 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDUX-14A-01D_CCGTCC.bam	SRR2039516	@dbgap@:reads/SRP011999/SRS945070/SRX1037926/SRR2039516/SRR2039516.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDVG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDVG-09A-01D	DNA	EFO	SRS835454	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDVG-09A-01D IL8279 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8279	SRX813863	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDVG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDVG-09A-01D IL8279 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDVG-09A-01D_CTTGTA.bam	SRR1730850	@dbgap@:reads/SRP011999/SRS835454/SRX813863/SRR1730850/SRR1730850.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDVG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDVG-14A-01D	DNA	EFO	SRS835478	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPDVG-14A-01D IL8280 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8280	SRX813883	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPDVG-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPDVG-14A-01D IL8280 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPDVG-14A-01D_AGTCAA.bam	SRR1730851	@dbgap@:reads/SRP011999/SRS835478/SRX813883/SRR1730851/SRR1730851.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDYE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDYE-09A-01D	DNA	EFO	SRS1080892	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPDYE-09A-01D TARGET-10-PAPDYE-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	152	50.2411	TARGET-10-PAPDYE-09A-01_EXCAP_1	SRX1274379		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPDYE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPDYE-09A-01D TARGET-10-PAPDYE-09A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001863_D1-TARGET-10-PAPDYE-09A-01.bam	SRR2485530	@dbgap@:reads/SRP011999/SRS1080892/SRX1274379/SRR2485530/SRR2485530.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPDYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPDYE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDYE-10A-01D	DNA	EFO	SRS1080891	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPDYE-10A-01D TARGET-10-PAPDYE-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	160	51.283	TARGET-10-PAPDYE-10A-01_EXCAP_1	SRX1274380		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPDYE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PAPDYE-10A-01D TARGET-10-PAPDYE-10A-01_EXCAP_1 run	sequencing assay	EFO	185	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001863_G1-TARGET-10-PAPDYE-10A-01.bam	SRR2485531	@dbgap@:reads/SRP011999/SRS1080891/SRX1274380/SRR2485531/SRR2485531.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-03A-01D	DNA	EFO	SRS160209	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-03A-01D ING_ALLSRG.PAPEFH03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH03A-1_1pA	SRX089156		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-03A-01D ING_ALLSRG.PAPEFH03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_4.bam	SRR563939	@dbgap@:reads/SRP011999/SRS160209/SRX089156/SRR563939/SRR563939.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-03A-01D	DNA	EFO	SRS160209	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-03A-01D ING_ALLSRG.PAPEFH03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH03A-1_1pA	SRX089156		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-03A-01D ING_ALLSRG.PAPEFH03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_4.bam	SRR563939	@dbgap@:reads/SRP011999/SRS160209/SRX089156/SRR563939/SRR563939.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-03A-01D	DNA	EFO	SRS160209	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-03A-01D ING_ALLSRG.PAPEFH03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH03A-1_1pA	SRX089156		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-03A-01D ING_ALLSRG.PAPEFH03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_4.bam	SRR563939	@dbgap@:reads/SRP011999/SRS160209/SRX089156/SRR563939/SRR563939.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-03A-01D	DNA	EFO	SRS160209	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-03A-01D ING_ALLSRG.PAPEFH03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH03A-1_1pA	SRX089156		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-03A-01D ING_ALLSRG.PAPEFH03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_4.bam	SRR563939	@dbgap@:reads/SRP011999/SRS160209/SRX089156/SRR563939/SRR563939.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-04A-01D	DNA	EFO	SRS160210	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-04A-01D ING_ALLSRG.PAPEFH04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH04A-1_1pA	SRX089188		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-04A-01D ING_ALLSRG.PAPEFH04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_3.bam	SRR564138	@dbgap@:reads/SRP011999/SRS160210/SRX089188/SRR564138/SRR564138.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-04A-01D	DNA	EFO	SRS160210	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-04A-01D ING_ALLSRG.PAPEFH04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH04A-1_1pA	SRX089188		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-04A-01D ING_ALLSRG.PAPEFH04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_3.bam	SRR564138	@dbgap@:reads/SRP011999/SRS160210/SRX089188/SRR564138/SRR564138.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-04A-01D	DNA	EFO	SRS160210	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-04A-01D ING_ALLSRG.PAPEFH04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH04A-1_1pA	SRX089188		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-04A-01D ING_ALLSRG.PAPEFH04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_3.bam	SRR564138	@dbgap@:reads/SRP011999/SRS160210/SRX089188/SRR564138/SRR564138.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-04A-01D	DNA	EFO	SRS160210	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-04A-01D ING_ALLSRG.PAPEFH04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH04A-1_1pA	SRX089188		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-04A-01D ING_ALLSRG.PAPEFH04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_3.bam	SRR564138	@dbgap@:reads/SRP011999/SRS160210/SRX089188/SRR564138/SRR564138.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-14A-01D	DNA	EFO	SRS160211	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH14A-1_1pA	SRX089142		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_5.bam	SRR563938	@dbgap@:reads/SRP011999/SRS160211/SRX089142/SRR563938/SRR563938.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-14A-01D	DNA	EFO	SRS160211	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH14A-1_1pA	SRX089142		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_5.bam	SRR563938	@dbgap@:reads/SRP011999/SRS160211/SRX089142/SRR563938/SRR563938.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-14A-01D	DNA	EFO	SRS160211	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH14A-1_1pA	SRX089142		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_5.bam	SRR563938	@dbgap@:reads/SRP011999/SRS160211/SRX089142/SRR563938/SRR563938.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-14A-01D	DNA	EFO	SRS160211	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH14A-1_1pA	SRX089142		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_5.bam	SRR563938	@dbgap@:reads/SRP011999/SRS160211/SRX089142/SRR563938/SRR563938.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-14A-01D	DNA	EFO	SRS160211	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH14A-1_1pA	SRX089142		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_5.bam	SRR563938	@dbgap@:reads/SRP011999/SRS160211/SRX089142/SRR563938/SRR563938.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPEFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEFH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEFH-14A-01D	DNA	EFO	SRS160211	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPEFH14A-1_1pA	SRX089142		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPEFH-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPEFH-14A-01D ING_ALLSRG.PAPEFH14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_5.bam	SRR563938	@dbgap@:reads/SRP011999/SRS160211/SRX089142/SRR563938/SRR563938.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPEJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJA-09A-01D	DNA	EFO	SRS891021	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEJA-09A-01D IL11297 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11297	SRX975976	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEJA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEJA-09A-01D IL11297 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEJA-09A-01D_TTAGGC.bam	SRR1949419	@dbgap@:reads/SRP011999/SRS891021/SRX975976/SRR1949419/SRR1949419.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEJA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJA-14A-01D	DNA	EFO	SRS890991	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEJA-14A-01D IL11298 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11298	SRX976000	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEJA-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEJA-14A-01D IL11298 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEJA-14A-01D_TGACCA.bam	SRR1949420	@dbgap@:reads/SRP011999/SRS890991/SRX976000/SRR1949420/SRR1949420.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJL-09A-01D	DNA	EFO	SRS891023	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEJL-09A-01D IL11305 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11305	SRX975974	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEJL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEJL-09A-01D IL11305 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEJL-09A-01D_GGCTAC.bam	SRR1949421	@dbgap@:reads/SRP011999/SRS891023/SRX975974/SRR1949421/SRR1949421.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJL-14A-01D	DNA	EFO	SRS891017	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEJL-14A-01D IL11306 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11306	SRX975980	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEJL-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEJL-14A-01D IL11306 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEJL-14A-01D_CTTGTA.bam	SRR1949422	@dbgap@:reads/SRP011999/SRS891017/SRX975980/SRR1949422/SRR1949422.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJM-09A-01D	DNA	EFO	SRS890960	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEJM-09A-01D IL11315 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11315	SRX976033	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEJM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEJM-09A-01D IL11315 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEJM-09A-01D_TTAGGC.bam	SRR1949423	@dbgap@:reads/SRP011999/SRS890960/SRX976033/SRR1949423/SRR1949423.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJM-14A-01D	DNA	EFO	SRS890967	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEJM-14A-01D IL11316 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11316	SRX976024	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEJM-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEJM-14A-01D IL11316 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEJM-14A-01D_TGACCA.bam	SRR1949424	@dbgap@:reads/SRP011999/SRS890967/SRX976024/SRR1949424/SRR1949424.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEJN-09A-01D IL8287 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8287	SRX813964	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEJN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEJN-09A-01D IL8287 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEJN-09A-01D_GTGGCC.bam	SRR1730852	@dbgap@:reads/SRP011999/SRS300912/SRX813964/SRR1730852/SRR1730852.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPEJN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-14A-01D	DNA	EFO	SRS835508	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEJN-14A-01D IL8288 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8288	SRX813918	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEJN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEJN-14A-01D IL8288 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEJN-14A-01D_GTTTCG.bam	SRR1730853	@dbgap@:reads/SRP011999/SRS835508/SRX813918/SRR1730853/SRR1730853.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEMC-09A-01D	DNA	EFO	SRS1080890	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPEMC-09A-01D TARGET-10-PAPEMC-09A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	61.8894	TARGET-10-PAPEMC-09A-01D_EXCAP_1	SRX1274381		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPEMC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPEMC-09A-01D TARGET-10-PAPEMC-09A-01D_EXCAP_1 run	sequencing assay	EFO	178	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001900_D1-TARGET-10-PAPEMC-09A-01D.bam	SRR2485532	@dbgap@:reads/SRP011999/SRS1080890/SRX1274381/SRR2485532/SRR2485532.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEMC-14A-01D	DNA	EFO	SRS1080889	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPEMC-14A-01D TARGET-10-PAPEMC-14A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	71.9785	TARGET-10-PAPEMC-14A-01D_EXCAP_1	SRX1274382		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPEMC-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPEMC-14A-01D TARGET-10-PAPEMC-14A-01D_EXCAP_1 run	sequencing assay	EFO	189	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001900_G3-TARGET-10-PAPEMC-14A-01D.bam	SRR2485533	@dbgap@:reads/SRP011999/SRS1080889/SRX1274382/SRR2485533/SRR2485533.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEMZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEMZ-09A-01D	DNA	EFO	SRS890952	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEMZ-09A-01D IL10941 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL10941	SRX976040	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEMZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEMZ-09A-01D IL10941 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEMZ-09A-01D_ACAGTG.bam	SRR1949425	@dbgap@:reads/SRP011999/SRS890952/SRX976040/SRR1949425/SRR1949425.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEMZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEMZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEMZ-14A-01D	DNA	EFO	SRS890950	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEMZ-14A-01D IL10942 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL10942	SRX976042	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEMZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEMZ-14A-01D IL10942 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEMZ-14A-01D_GCCAAT.bam	SRR1949426	@dbgap@:reads/SRP011999/SRS890950/SRX976042/SRR1949426/SRR1949426.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPERM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPERM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPERM-09A-01D	DNA	EFO	SRS1080888	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPERM-09A-01D TARGET-10-PAPERM-09A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	69.8753	TARGET-10-PAPERM-09A-01D_EXCAP_1	SRX1274383		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPERM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPERM-09A-01D TARGET-10-PAPERM-09A-01D_EXCAP_1 run	sequencing assay	EFO	185	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001908_D1-TARGET-10-PAPERM-09A-01D.bam	SRR2485534	@dbgap@:reads/SRP011999/SRS1080888/SRX1274383/SRR2485534/SRR2485534.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPERM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPERM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPERM-14A-01D	DNA	EFO	SRS1080887	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPERM-14A-01D TARGET-10-PAPERM-14A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	61.9142	TARGET-10-PAPERM-14A-01D_EXCAP_1	SRX1274384		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPERM-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPERM-14A-01D TARGET-10-PAPERM-14A-01D_EXCAP_1 run	sequencing assay	EFO	185	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001908_G3-TARGET-10-PAPERM-14A-01D.bam	SRR2485535	@dbgap@:reads/SRP011999/SRS1080887/SRX1274384/SRR2485535/SRR2485535.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPERN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPERN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPERN-09A-01D	DNA	EFO	SRS835496	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPERN-09A-01D IL8295 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.8	IL8295	SRX813905	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPERN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPERN-09A-01D IL8295 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPERN-09A-01D_CAAAAG.bam	SRR1730854	@dbgap@:reads/SRP011999/SRS835496/SRX813905/SRR1730854/SRR1730854.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPERN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPERN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPERN-14A-01D	DNA	EFO	SRS835473	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPERN-14A-01D IL8296 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8296	SRX813882	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPERN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPERN-14A-01D IL8296 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPERN-14A-01D_CAACTA.bam	SRR1730855	@dbgap@:reads/SRP011999/SRS835473/SRX813882/SRR1730855/SRR1730855.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPERU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPERU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPERU-09A-01D	DNA	EFO	SRS835513	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPERU-09A-01D IL8650 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8650	SRX813922	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPERU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPERU-09A-01D IL8650 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPERU-09A-01D_TGACCA.bam	SRR1730856	@dbgap@:reads/SRP011999/SRS835513/SRX813922/SRR1730856/SRR1730856.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPERU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPERU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPERU-14A-01D	DNA	EFO	SRS835552	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPERU-14A-01D IL8651 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8651	SRX813963	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPERU-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPERU-14A-01D IL8651 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPERU-14A-01D_ACAGTG.bam	SRR1730857	@dbgap@:reads/SRP011999/SRS835552/SRX813963/SRR1730857/SRR1730857.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPERW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPERW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPERW-09A-01D	DNA	EFO	SRS890945	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPERW-09A-01D IL10949 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL10949	SRX976052	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPERW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPERW-09A-01D IL10949 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPERW-09A-01D_AGTCAA.bam	SRR1949427	@dbgap@:reads/SRP011999/SRS890945/SRX976052/SRR1949427/SRR1949427.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPERW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPERW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPERW-14A-01D	DNA	EFO	SRS890965	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPERW-14A-01D IL10950 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL10950	SRX976026	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPERW-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPERW-14A-01D IL10950 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPERW-14A-01D_AGTTCC.bam	SRR1949428	@dbgap@:reads/SRP011999/SRS890965/SRX976026/SRR1949428/SRR1949428.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPESB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPESB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESB-09A-01D	DNA	EFO	SRS1080886	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPESB-09A-01D SJBALL001923_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	148	44.3557	SJBALL001923_D1_EXCAP_1	SRX1274385		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPESB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPESB-09A-01D SJBALL001923_D1_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001923_D1-TARGET-10-PAPESB-09A-01.bam	SRR2485536	@dbgap@:reads/SRP011999/SRS1080886/SRX1274385/SRR2485536/SRR2485536.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPESB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPESB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESB-14A-01D	DNA	EFO	SRS1080885	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPESB-14A-01D SJBALL001923_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	153	48.6143	SJBALL001923_G1_EXCAP_1	SRX1274386		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPESB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPESB-14A-01D SJBALL001923_G1_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001923_G1-TARGET-10-PAPESB-14A-01.bam	SRR2485537	@dbgap@:reads/SRP011999/SRS1080885/SRX1274386/SRR2485537/SRR2485537.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPESY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPESY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESY-09A-01D	DNA	EFO	SRS890941	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPESY-09A-01D IL10957 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL10957	SRX976051	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPESY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPESY-09A-01D IL10957 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPESY-09A-01D_GTTTCG.bam	SRR1949429	@dbgap@:reads/SRP011999/SRS890941/SRX976051/SRR1949429/SRR1949429.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPESY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPESY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESY-14A-01D	DNA	EFO	SRS890954	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPESY-14A-01D IL10958 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL10958	SRX976046	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPESY-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPESY-14A-01D IL10958 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPESY-14A-01D_CGTACG.bam	SRR1949430	@dbgap@:reads/SRP011999/SRS890954/SRX976046/SRR1949430/SRR1949430.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPESZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPESZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESZ-09A-01D	DNA	EFO	SRS890970	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPESZ-09A-01D IL11251 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11251	SRX976032	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPESZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPESZ-09A-01D IL11251 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPESZ-09A-01D_ACAGTG.bam	SRR1949431	@dbgap@:reads/SRP011999/SRS890970/SRX976032/SRR1949431/SRR1949431.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPESZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPESZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESZ-14A-01D	DNA	EFO	SRS890968	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPESZ-14A-01D IL11252 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11252	SRX976023	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPESZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPESZ-14A-01D IL11252 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPESZ-14A-01D_GCCAAT.bam	SRR1949432	@dbgap@:reads/SRP011999/SRS890968/SRX976023/SRR1949432/SRR1949432.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPETC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPETC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPETC-09A-01D	DNA	EFO	SRS835563	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPETC-09A-01D IL8658 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8658	SRX813973	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPETC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPETC-09A-01D IL8658 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPETC-09A-01D_CTTGTA.bam	SRR1730858	@dbgap@:reads/SRP011999/SRS835563/SRX813973/SRR1730858/SRR1730858.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPETC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPETC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPETC-14A-01D	DNA	EFO	SRS835580	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPETC-14A-01D IL8659 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL8659	SRX813994	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPETC-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPETC-14A-01D IL8659 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPETC-14A-01D_AGTCAA.bam	SRR1730859	@dbgap@:reads/SRP011999/SRS835580/SRX813994/SRR1730859/SRR1730859.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEZL-09A-01D	DNA	EFO	SRS1080884	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPEZL-09A-01D SJBALL001893_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	75.274	SJBALL001893_D1_EXCAP_1	SRX1274387		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPEZL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPEZL-09A-01D SJBALL001893_D1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001893_D1-TARGET-10-PAPEZL-09A-01.bam	SRR2485538	@dbgap@:reads/SRP011999/SRS1080884/SRX1274387/SRR2485538/SRR2485538.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEZL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEZL-10A-01D	DNA	EFO	SRS1080883	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPEZL-10A-01D SJBALL001893_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	54.7026	SJBALL001893_G1_EXCAP_1	SRX1274388		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPEZL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPEZL-10A-01D SJBALL001893_G1_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001893_G1-TARGET-10-PAPEZL-10A-01.bam	SRR2485539	@dbgap@:reads/SRP011999/SRS1080883/SRX1274388/SRR2485539/SRR2485539.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEZR-09A-01D	DNA	EFO	SRS835571	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEZR-09A-01D IL8666 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.2	IL8666	SRX813980	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEZR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEZR-09A-01D IL8666 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEZR-09A-01D_GTGGCC.bam	SRR1730860	@dbgap@:reads/SRP011999/SRS835571/SRX813980/SRR1730860/SRR1730860.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEZR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEZR-10A-01D	DNA	EFO	SRS835585	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEZR-10A-01D IL8667 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	26.1	IL8667	SRX814000	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEZR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEZR-10A-01D IL8667 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEZR-10A-01D_GTTTCG.bam	SRR1730861	@dbgap@:reads/SRP011999/SRS835585/SRX814000/SRR1730861/SRR1730861.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPEZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPEZR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEZR-10A-01D	DNA	EFO	SRS835585	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPEZR-10A-01D IL8667 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	26.1	IL8667	SRX814000	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPEZR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPEZR-10A-01D IL8667 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPEZR-10A-01D_GTTTCG_supp.bam	SRR2990558	@dbgap@:reads/SRP011999/SRS835585/SRX814000/SRR2990558/SRR2990558.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFAT-09A-01D	DNA	EFO	SRS890973	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFAT-09A-01D IL11259 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11259	SRX976019	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFAT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFAT-09A-01D IL11259 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFAT-09A-01D_AGTCAA.bam	SRR1949433	@dbgap@:reads/SRP011999/SRS890973/SRX976019/SRR1949433/SRR1949433.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFAT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFAT-14A-01D	DNA	EFO	SRS890977	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFAT-14A-01D IL11260 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11260	SRX976015	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFAT-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFAT-14A-01D IL11260 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFAT-14A-01D_AGTTCC.bam	SRR1949434	@dbgap@:reads/SRP011999/SRS890977/SRX976015/SRR1949434/SRR1949434.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFBR-09A-01D	DNA	EFO	SRS835509	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFBR-09A-01D IL8672 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8672	SRX813917	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFBR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFBR-09A-01D IL8672 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFBR-09A-01D_CAAAAG.bam	SRR1730862	@dbgap@:reads/SRP011999/SRS835509/SRX813917/SRR1730862/SRR1730862.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFBR-14A-01D	DNA	EFO	SRS835488	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFBR-14A-01D IL8673 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8673	SRX813899	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFBR-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFBR-14A-01D IL8673 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFBR-14A-01D_CAACTA.bam	SRR1730863	@dbgap@:reads/SRP011999/SRS835488/SRX813899/SRR1730863/SRR1730863.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFBX-09A-01D	DNA	EFO	SRS890985	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFBX-09A-01D IL11267 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11267	SRX976007	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFBX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFBX-09A-01D IL11267 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFBX-09A-01D_GTTTCG.bam	SRR1949435	@dbgap@:reads/SRP011999/SRS890985/SRX976007/SRR1949435/SRR1949435.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFBX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFBX-14A-01D	DNA	EFO	SRS890974	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFBX-14A-01D IL11268 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11268	SRX976018	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFBX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFBX-14A-01D IL11268 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFBX-14A-01D_CGTACG.bam	SRR1949436	@dbgap@:reads/SRP011999/SRS890974/SRX976018/SRR1949436/SRR1949436.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFFW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFFW-09A-01D	DNA	EFO	SRS890955	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFFW-09A-01D IL11275 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11275	SRX976038	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFFW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFFW-09A-01D IL11275 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFFW-09A-01D_CAACTA.bam	SRR1949437	@dbgap@:reads/SRP011999/SRS890955/SRX976038/SRR1949437/SRR1949437.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFFW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFFW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFFW-14A-01D	DNA	EFO	SRS890969	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFFW-14A-01D IL11276 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11276	SRX976022	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFFW-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFFW-14A-01D IL11276 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFFW-14A-01D_CACCGG.bam	SRR1949438	@dbgap@:reads/SRP011999/SRS890969/SRX976022/SRR1949438/SRR1949438.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFHH-09A-01D	DNA	EFO	SRS891028	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFHH-09A-01D IL11283 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11283	SRX975969	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFHH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFHH-09A-01D IL11283 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFHH-09A-01D_CGGAAT.bam	SRR1949439	@dbgap@:reads/SRP011999/SRS891028/SRX975969/SRR1949439/SRR1949439.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFHH-14A-01D	DNA	EFO	SRS891014	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFHH-14A-01D IL11284 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL11284	SRX975983	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFHH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFHH-14A-01D IL11284 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFHH-14A-01D_CTAGCT.bam	SRR1949440	@dbgap@:reads/SRP011999/SRS891014/SRX975983/SRR1949440/SRR1949440.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFHR-09A-01D	DNA	EFO	SRS890995	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFHR-09A-01D IL11291 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11291	SRX975996	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFHR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFHR-09A-01D IL11291 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFHR-09A-01D_TCATTC.bam	SRR1949441	@dbgap@:reads/SRP011999/SRS890995/SRX975996/SRR1949441/SRR1949441.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFHR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFHR-14A-01D	DNA	EFO	SRS890994	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFHR-14A-01D IL11292 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11292	SRX975997	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFHR-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFHR-14A-01D IL11292 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFHR-14A-01D_TCCCGA.bam	SRR1949442	@dbgap@:reads/SRP011999/SRS890994/SRX975997/SRR1949442/SRR1949442.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFHX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFHX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFHX-09A-01D	DNA	EFO	SRS891016	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFHX-09A-01D IL11299 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11299	SRX975982	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFHX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFHX-09A-01D IL11299 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFHX-09A-01D_ACAGTG.bam	SRR1949443	@dbgap@:reads/SRP011999/SRS891016/SRX975982/SRR1949443/SRR1949443.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFHX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFHX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFHX-14A-01D	DNA	EFO	SRS890999	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFHX-14A-01D IL11300 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11300	SRX975992	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFHX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFHX-14A-01D IL11300 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFHX-14A-01D_GCCAAT.bam	SRR1949444	@dbgap@:reads/SRP011999/SRS890999/SRX975992/SRR1949444/SRR1949444.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFIX-09A-01D	DNA	EFO	SRS891024	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFIX-09A-01D IL11307 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11307	SRX975973	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFIX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFIX-09A-01D IL11307 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFIX-09A-01D_AGTCAA.bam	SRR1949445	@dbgap@:reads/SRP011999/SRS891024/SRX975973/SRR1949445/SRR1949445.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFIX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFIX-14A-01D	DNA	EFO	SRS891026	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFIX-14A-01D IL11308 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11308	SRX975970	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFIX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFIX-14A-01D IL11308 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFIX-14A-01D_AGTTCC.bam	SRR1949446	@dbgap@:reads/SRP011999/SRS891026/SRX975970/SRR1949446/SRR1949446.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFKA-09A-01D	DNA	EFO	SRS880600	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFKA-09A-01D IL10622 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10622	SRX896862	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFKA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFKA-09A-01D IL10622 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFKA-09A-01D_GTGAAA.bam	SRR1825576	@dbgap@:reads/SRP011999/SRS880600/SRX896862/SRR1825576/SRR1825576.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFKA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFKA-14A-01D	DNA	EFO	SRS880515	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFKA-14A-01D IL10623 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10623	SRX896948	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFKA-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFKA-14A-01D IL10623 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFKA-14A-01D_GTGGCC.bam	SRR1825577	@dbgap@:reads/SRP011999/SRS880515/SRX896948/SRR1825577/SRR1825577.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFNV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFNV-09A-01D	DNA	EFO	SRS890962	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFNV-09A-01D IL11317 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL11317	SRX976030	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFNV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFNV-09A-01D IL11317 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFNV-09A-01D_ACAGTG.bam	SRR1949447	@dbgap@:reads/SRP011999/SRS890962/SRX976030/SRR1949447/SRR1949447.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFNV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFNV-14A-01D	DNA	EFO	SRS890972	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFNV-14A-01D IL11318 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11318	SRX976020	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFNV-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFNV-14A-01D IL11318 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFNV-14A-01D_GCCAAT.bam	SRR1949448	@dbgap@:reads/SRP011999/SRS890972/SRX976020/SRR1949448/SRR1949448.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFPZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFPZ-09A-01D	DNA	EFO	SRS835581	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFPZ-09A-01D IL8692 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27	IL8692	SRX813990	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFPZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFPZ-09A-01D IL8692 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFPZ-09A-01D_TGACCA.bam	SRR1730864	@dbgap@:reads/SRP011999/SRS835581/SRX813990/SRR1730864/SRR1730864.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFPZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFPZ-14A-01D	DNA	EFO	SRS835446	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFPZ-14A-01D IL8693 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8693	SRX813855	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFPZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFPZ-14A-01D IL8693 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFPZ-14A-01D_ACAGTG.bam	SRR1730865	@dbgap@:reads/SRP011999/SRS835446/SRX813855/SRR1730865/SRR1730865.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFTJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFTJ-09A-01D	DNA	EFO	SRS890936	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFTJ-09A-01D IL10943 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL10943	SRX976056	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFTJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFTJ-09A-01D IL10943 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFTJ-09A-01D_CAGATC.bam	SRR1949449	@dbgap@:reads/SRP011999/SRS890936/SRX976056/SRR1949449/SRR1949449.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFTJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFTJ-14A-01D	DNA	EFO	SRS890989	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFTJ-14A-01D IL10944 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL10944	SRX976003	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFTJ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFTJ-14A-01D IL10944 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFTJ-14A-01D_ACTTGA.bam	SRR1949450	@dbgap@:reads/SRP011999/SRS890989/SRX976003/SRR1949450/SRR1949450.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFUF-09A-01D	DNA	EFO	SRS890944	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFUF-09A-01D IL10951 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL10951	SRX976048	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFUF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFUF-09A-01D IL10951 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFUF-09A-01D_ATGTCA.bam	SRR1949451	@dbgap@:reads/SRP011999/SRS890944/SRX976048/SRR1949451/SRR1949451.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFUF-14A-01D	DNA	EFO	SRS890966	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFUF-14A-01D IL10952 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL10952	SRX976025	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFUF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFUF-14A-01D IL10952 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFUF-14A-01D_CCGTCC.bam	SRR1949452	@dbgap@:reads/SRP011999/SRS890966/SRX976025/SRR1949452/SRR1949452.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFZF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFZF-09A-01D	DNA	EFO	SRS890957	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFZF-09A-01D IL10959 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL10959	SRX976036	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFZF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFZF-09A-01D IL10959 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFZF-09A-01D_GAGTGG.bam	SRR1949453	@dbgap@:reads/SRP011999/SRS890957/SRX976036/SRR1949453/SRR1949453.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFZF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFZF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFZF-14A-01D	DNA	EFO	SRS890971	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFZF-14A-01D IL10960 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL10960	SRX976021	P11_B35	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFZF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFZF-14A-01D IL10960 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFZF-14A-01D_GGTAGC.bam	SRR1949454	@dbgap@:reads/SRP011999/SRS890971/SRX976021/SRR1949454/SRR1949454.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFZL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFZL-09A-01D	DNA	EFO	SRS890943	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFZL-09A-01D IL11253 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11253	SRX976049	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFZL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFZL-09A-01D IL11253 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFZL-09A-01D_CAGATC.bam	SRR1949455	@dbgap@:reads/SRP011999/SRS890943/SRX976049/SRR1949455/SRR1949455.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFZL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFZL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFZL-14A-01D	DNA	EFO	SRS890978	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFZL-14A-01D IL11254 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11254	SRX976014	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFZL-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFZL-14A-01D IL11254 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFZL-14A-01D_ACTTGA.bam	SRR1949456	@dbgap@:reads/SRP011999/SRS890978/SRX976014/SRR1949456/SRR1949456.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFZX-09A-01D	DNA	EFO	SRS890961	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFZX-09A-01D IL11261 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11261	SRX976031	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFZX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFZX-09A-01D IL11261 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFZX-09A-01D_ATGTCA.bam	SRR1949457	@dbgap@:reads/SRP011999/SRS890961/SRX976031/SRR1949457/SRR1949457.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPFZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPFZX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFZX-14A-01D	DNA	EFO	SRS890956	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPFZX-14A-01D IL11262 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11262	SRX976037	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPFZX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPFZX-14A-01D IL11262 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPFZX-14A-01D_CCGTCC.bam	SRR1949458	@dbgap@:reads/SRP011999/SRS890956/SRX976037/SRR1949458/SRR1949458.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGEE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGEE-09A-01D	DNA	EFO	SRS835569	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGEE-09A-01D IL8700 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL8700	SRX813983	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGEE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGEE-09A-01D IL8700 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGEE-09A-01D_CTTGTA.bam	SRR1730866	@dbgap@:reads/SRP011999/SRS835569/SRX813983/SRR1730866/SRR1730866.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGEE-10A-01D	DNA	EFO	SRS835447	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGEE-10A-01D IL8701 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8701	SRX813856	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGEE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGEE-10A-01D IL8701 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGEE-10A-01D_AGTCAA.bam	SRR1730867	@dbgap@:reads/SRP011999/SRS835447/SRX813856/SRR1730867/SRR1730867.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGFD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFD-09A-01D	DNA	EFO	SRS835584	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGFD-09A-01D IL8708 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	26.2	IL8708	SRX813999	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGFD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGFD-09A-01D IL8708 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGFD-09A-01D_GTGGCC.bam	SRR1730868	@dbgap@:reads/SRP011999/SRS835584/SRX813999/SRR1730868/SRR1730868.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGFD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFD-14A-01D	DNA	EFO	SRS835578	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGFD-14A-01D IL8709 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL8709	SRX813992	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGFD-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGFD-14A-01D IL8709 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGFD-14A-01D_GTTTCG.bam	SRR1730869	@dbgap@:reads/SRP011999/SRS835578/SRX813992/SRR1730869/SRR1730869.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGKP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGKP-09A-01D	DNA	EFO	SRS835558	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGKP-09A-01D IL8716 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8716	SRX813968	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGKP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGKP-09A-01D IL8716 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGKP-09A-01D_CAAAAG.bam	SRR1730870	@dbgap@:reads/SRP011999/SRS835558/SRX813968/SRR1730870/SRR1730870.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGKP-10A-01D	DNA	EFO	SRS835586	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGKP-10A-01D IL8717 library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	26.4	IL8717	SRX813997	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGKP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGKP-10A-01D IL8717 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGKP-10A-01D_CAACTA.bam	SRR1730871	@dbgap@:reads/SRP011999/SRS835586/SRX813997/SRR1730871/SRR1730871.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGLD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGLD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGLD-09A-01D	DNA	EFO	SRS1080882	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPGLD-09A-01D SJBALL001925_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	50.0255	SJBALL001925_D1_EXCAP_1	SRX1274389		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPGLD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPGLD-09A-01D SJBALL001925_D1_EXCAP_1 run	sequencing assay	EFO	165	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001925_D1-TARGET-10-PAPGLD-09A-01.bam	SRR2485540	@dbgap@:reads/SRP011999/SRS1080882/SRX1274389/SRR2485540/SRR2485540.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGLD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGLD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGLD-10A-01D	DNA	EFO	SRS1080881	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPGLD-10A-01D SJBALL001925_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	59.1206	SJBALL001925_G1_EXCAP_1	SRX1274390		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPGLD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPGLD-10A-01D SJBALL001925_G1_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001925_G1-TARGET-10-PAPGLD-10A-01.bam	SRR2485541	@dbgap@:reads/SRP011999/SRS1080881/SRX1274390/SRR2485541/SRR2485541.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGLS-09A-01D	DNA	EFO	SRS835510	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGLS-09A-01D IL8273 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8273	SRX813919	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGLS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGLS-09A-01D IL8273 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGLS-09A-01D_GCCAAT.bam	SRR1730872	@dbgap@:reads/SRP011999/SRS835510/SRX813919/SRR1730872/SRR1730872.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGLS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGLS-10A-01D	DNA	EFO	SRS835495	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGLS-10A-01D IL8274 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8274	SRX813903	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGLS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGLS-10A-01D IL8274 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGLS-10A-01D_CAGATC.bam	SRR1730873	@dbgap@:reads/SRP011999/SRS835495/SRX813903/SRR1730873/SRR1730873.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMT-09A-01D	DNA	EFO	SRS835588	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGMT-09A-01D IL8281 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL8281	SRX813995	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGMT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGMT-09A-01D IL8281 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGMT-09A-01D_AGTTCC.bam	SRR1730874	@dbgap@:reads/SRP011999/SRS835588/SRX813995/SRR1730874/SRR1730874.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGMT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMT-10A-01D	DNA	EFO	SRS835512	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGMT-10A-01D IL8282 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8282	SRX813921	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGMT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGMT-10A-01D IL8282 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGMT-10A-01D_ATGTCA.bam	SRR1730875	@dbgap@:reads/SRP011999/SRS835512/SRX813921/SRR1730875/SRR1730875.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGWN-09A-01D	DNA	EFO	SRS835534	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGWN-09A-01D IL8289 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8289	SRX813943	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGWN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGWN-09A-01D IL8289 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGWN-09A-01D_CGTACG.bam	SRR1730876	@dbgap@:reads/SRP011999/SRS835534/SRX813943/SRR1730876/SRR1730876.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPGWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPGWN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGWN-14A-01D	DNA	EFO	SRS835417	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPGWN-14A-01D IL8290 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL8290	SRX813824	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPGWN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPGWN-14A-01D IL8290 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPGWN-14A-01D_GAGTGG.bam	SRR1730877	@dbgap@:reads/SRP011999/SRS835417/SRX813824/SRR1730877/SRR1730877.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHAM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHAM-09A-01D	DNA	EFO	SRS835420	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHAM-09A-01D IL8297 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.5	IL8297	SRX813827	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHAM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHAM-09A-01D IL8297 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHAM-09A-01D_CACCGG.bam	SRR1730878	@dbgap@:reads/SRP011999/SRS835420/SRX813827/SRR1730878/SRR1730878.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHAM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHAM-14A-01D	DNA	EFO	SRS835440	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHAM-14A-01D IL8298 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8298	SRX813849	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHAM-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHAM-14A-01D IL8298 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHAM-14A-01D_CACGAT.bam	SRR1730879	@dbgap@:reads/SRP011999/SRS835440/SRX813849/SRR1730879/SRR1730879.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHBW-09A-01D	DNA	EFO	SRS835542	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHBW-09A-01D IL8652 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8652	SRX813952	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHBW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHBW-09A-01D IL8652 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHBW-09A-01D_GCCAAT.bam	SRR1730880	@dbgap@:reads/SRP011999/SRS835542/SRX813952/SRR1730880/SRR1730880.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHBW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHBW-14A-01D	DNA	EFO	SRS835560	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHBW-14A-01D IL8653 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8653	SRX813971	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHBW-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHBW-14A-01D IL8653 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHBW-14A-01D_CAGATC.bam	SRR1730881	@dbgap@:reads/SRP011999/SRS835560/SRX813971/SRR1730881/SRR1730881.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCA-09A-01D	DNA	EFO	SRS835543	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHCA-09A-01D IL8660 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.5	IL8660	SRX813951	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHCA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHCA-09A-01D IL8660 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHCA-09A-01D_AGTTCC.bam	SRR1730882	@dbgap@:reads/SRP011999/SRS835543/SRX813951/SRR1730882/SRR1730882.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCA-14A-01D	DNA	EFO	SRS835553	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHCA-14A-01D IL8661 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8661	SRX813960	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHCA-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHCA-14A-01D IL8661 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHCA-14A-01D_ATGTCA.bam	SRR1730883	@dbgap@:reads/SRP011999/SRS835553/SRX813960/SRR1730883/SRR1730883.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHDN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHDN-09A-01D	DNA	EFO	SRS835412	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHDN-09A-01D IL8674 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.2	IL8674	SRX813821	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHDN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHDN-09A-01D IL8674 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHDN-09A-01D_CACCGG.bam	SRR1730884	@dbgap@:reads/SRP011999/SRS835412/SRX813821/SRR1730884/SRR1730884.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHDN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHDN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHDN-14A-01D	DNA	EFO	SRS835570	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHDN-14A-01D IL8675 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.2	IL8675	SRX813979	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHDN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHDN-14A-01D IL8675 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHDN-14A-01D_CACGAT.bam	SRR1730885	@dbgap@:reads/SRP011999/SRS835570/SRX813979/SRR1730885/SRR1730885.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHDX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHDX-09A-01D	DNA	EFO	SRS835538	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHDX-09A-01D IL8694 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.5	IL8694	SRX813948	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHDX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHDX-09A-01D IL8694 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHDX-09A-01D_GCCAAT.bam	SRR1730886	@dbgap@:reads/SRP011999/SRS835538/SRX813948/SRR1730886/SRR1730886.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHDX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHDX-10A-01D	DNA	EFO	SRS891212	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHDX-10A-01D IL11620 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11620	SRX975862	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHDX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHDX-10A-01D IL11620 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHDX-10A-01D_TTAGGC.bam	SRR1949570	@dbgap@:reads/SRP011999/SRS891212/SRX975862/SRR1949570/SRR1949570.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHED-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHED-09A-01D	DNA	EFO	SRS835424	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHED-09A-01D IL8702 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.4	IL8702	SRX813830	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHED-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHED-09A-01D IL8702 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHED-09A-01D_AGTTCC.bam	SRR1730887	@dbgap@:reads/SRP011999/SRS835424/SRX813830/SRR1730887/SRR1730887.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHED	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHED-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHED-14A-01D	DNA	EFO	SRS835573	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHED-14A-01D IL8703 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL8703	SRX813984	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHED-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHED-14A-01D IL8703 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHED-14A-01D_ATGTCA.bam	SRR1730888	@dbgap@:reads/SRP011999/SRS835573/SRX813984/SRR1730888/SRR1730888.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHHP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHHP-09A-01D	DNA	EFO	SRS835566	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHHP-09A-01D IL8710 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.2	IL8710	SRX813978	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHHP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHHP-09A-01D IL8710 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHHP-09A-01D_CGTACG.bam	SRR1730889	@dbgap@:reads/SRP011999/SRS835566/SRX813978/SRR1730889/SRR1730889.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHHP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHHP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHHP-10A-01D	DNA	EFO	SRS891172	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHHP-10A-01D IL11616 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11616	SRX975819	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHHP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHHP-10A-01D IL11616 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHHP-10A-01D_TCGAAG.bam	SRR1949571	@dbgap@:reads/SRP011999/SRS891172/SRX975819/SRR1949571/SRR1949571.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHIG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHIG-09A-01D	DNA	EFO	SRS1080880	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPHIG-09A-01D TARGET-10-PAPHIG-09A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	65.156	TARGET-10-PAPHIG-09A-01D_EXCAP_1	SRX1274391		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPHIG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPHIG-09A-01D TARGET-10-PAPHIG-09A-01D_EXCAP_1 run	sequencing assay	EFO	183	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001922_D1-TARGET-10-PAPHIG-09A-01D.bam	SRR2485542	@dbgap@:reads/SRP011999/SRS1080880/SRX1274391/SRR2485542/SRR2485542.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHIG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHIG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHIG-14A-01D	DNA	EFO	SRS1080879	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPHIG-14A-01D TARGET-10-PAPHIG-14A-01D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	65.423	TARGET-10-PAPHIG-14A-01D_EXCAP_1	SRX1274392		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPHIG-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-12-03	TARGET-10-PAPHIG-14A-01D TARGET-10-PAPHIG-14A-01D_EXCAP_1 run	sequencing assay	EFO	185	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001922_G3-TARGET-10-PAPHIG-14A-01D.bam	SRR2485543	@dbgap@:reads/SRP011999/SRS1080879/SRX1274392/SRR2485543/SRR2485543.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHJF-09A-01D IL8718 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL8718	SRX813975	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHJF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHJF-09A-01D IL8718 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHJF-09A-01D_CACCGG.bam	SRR1730890	@dbgap@:reads/SRP011999/SRS300928/SRX813975/SRR1730890/SRR1730890.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPHJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-14A-01D	DNA	EFO	SRS835557	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHJF-14A-01D IL8719 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8719	SRX813967	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHJF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHJF-14A-01D IL8719 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHJF-14A-01D_CACGAT.bam	SRR1730891	@dbgap@:reads/SRP011999/SRS835557/SRX813967/SRR1730891/SRR1730891.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHLH-09A-01D	DNA	EFO	SRS835466	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHLH-09A-01D IL8275 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8275	SRX813873	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHLH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHLH-09A-01D IL8275 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHLH-09A-01D_ACTTGA.bam	SRR1730892	@dbgap@:reads/SRP011999/SRS835466/SRX813873/SRR1730892/SRR1730892.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHLH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHLH-10A-01D	DNA	EFO	SRS835464	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHLH-10A-01D IL8276 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28	IL8276	SRX813870	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHLH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHLH-10A-01D IL8276 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHLH-10A-01D_GATCAG.bam	SRR1730893	@dbgap@:reads/SRP011999/SRS835464/SRX813870/SRR1730893/SRR1730893.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHNM-09A-01D	DNA	EFO	SRS835498	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHNM-09A-01D IL8283 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.8	IL8283	SRX813907	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHNM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHNM-09A-01D IL8283 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHNM-09A-01D_CCGTCC.bam	SRR1730894	@dbgap@:reads/SRP011999/SRS835498/SRX813907/SRR1730894/SRR1730894.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHNM-10A-01D	DNA	EFO	SRS835532	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHNM-10A-01D IL8284 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8284	SRX813941	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHNM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHNM-10A-01D IL8284 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHNM-10A-01D_GTAGAG.bam	SRR1730895	@dbgap@:reads/SRP011999/SRS835532/SRX813941/SRR1730895/SRR1730895.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHNR-09A-01D	DNA	EFO	SRS835444	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHNR-09A-01D IL8291 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8291	SRX813851	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHNR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHNR-09A-01D IL8291 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHNR-09A-01D_GGTAGC.bam	SRR1730896	@dbgap@:reads/SRP011999/SRS835444/SRX813851/SRR1730896/SRR1730896.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHNR-10A-01D	DNA	EFO	SRS835518	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHNR-10A-01D IL8292 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8292	SRX813925	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHNR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHNR-10A-01D IL8292 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHNR-10A-01D_ACTGAT.bam	SRR1730897	@dbgap@:reads/SRP011999/SRS835518/SRX813925/SRR1730897/SRR1730897.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHRV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRV-09A-01D	DNA	EFO	SRS835434	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHRV-09A-01D IL8299 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.2	IL8299	SRX813843	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHRV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHRV-09A-01D IL8299 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHRV-09A-01D_CACTCA.bam	SRR1730898	@dbgap@:reads/SRP011999/SRS835434/SRX813843/SRR1730898/SRR1730898.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHRV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRV-10A-01D	DNA	EFO	SRS835441	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHRV-10A-01D IL8300 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8300	SRX813850	P2_B4	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHRV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHRV-10A-01D IL8300 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHRV-10A-01D_CAGGCG.bam	SRR1730899	@dbgap@:reads/SRP011999/SRS835441/SRX813850/SRR1730899/SRR1730899.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHWE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWE-09A-01D	DNA	EFO	SRS835514	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHWE-09A-01D IL8654 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8654	SRX813923	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHWE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHWE-09A-01D IL8654 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHWE-09A-01D_ACTTGA.bam	SRR1730900	@dbgap@:reads/SRP011999/SRS835514/SRX813923/SRR1730900/SRR1730900.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHWE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWE-10A-01D	DNA	EFO	SRS835567	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHWE-10A-01D IL8655 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.2	IL8655	SRX813977	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHWE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHWE-10A-01D IL8655 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHWE-10A-01D_GATCAG.bam	SRR1730901	@dbgap@:reads/SRP011999/SRS835567/SRX813977/SRR1730901/SRR1730901.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHXJ-09A-01D	DNA	EFO	SRS1080878	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPHXJ-09A-01D SJBALL001947_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	153	48.0918	SJBALL001947_D1_EXCAP_1	SRX1274393		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPHXJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPHXJ-09A-01D SJBALL001947_D1_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001947_D1-TARGET-10-PAPHXJ-09A-01.bam	SRR2485544	@dbgap@:reads/SRP011999/SRS1080878/SRX1274393/SRR2485544/SRR2485544.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHXJ-10A-01D	DNA	EFO	SRS1080877	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPHXJ-10A-01D SJBALL001947_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	67.2496	SJBALL001947_G1_EXCAP_1	SRX1274394		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPHXJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPHXJ-10A-01D SJBALL001947_G1_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001947_G1-TARGET-10-PAPHXJ-10A-01.bam	SRR2485545	@dbgap@:reads/SRP011999/SRS1080877/SRX1274394/SRR2485545/SRR2485545.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYM-09A-01D	DNA	EFO	SRS1080876	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPHYM-09A-01D SJBALL001951_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	54.0056	SJBALL001951_D1_EXCAP_1	SRX1274395		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPHYM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPHYM-09A-01D SJBALL001951_D1_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001951_D1-TARGET-10-PAPHYM-09A-01.bam	SRR2485546	@dbgap@:reads/SRP011999/SRS1080876/SRX1274395/SRR2485546/SRR2485546.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYM-10A-01D	DNA	EFO	SRS1080875	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPHYM-10A-01D SJBALL001951_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	168	68.941	SJBALL001951_G1_EXCAP_1	SRX1274396		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPHYM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPHYM-10A-01D SJBALL001951_G1_EXCAP_1 run	sequencing assay	EFO	165	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001951_G1-TARGET-10-PAPHYM-10A-01.bam	SRR2485547	@dbgap@:reads/SRP011999/SRS1080875/SRX1274396/SRR2485547/SRR2485547.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYV-09A-01D	DNA	EFO	SRS835590	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHYV-09A-01D IL8662 library	PAIRED	GENOMIC	WXS	Hybrid Selection	179	26.7	IL8662	SRX813996	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHYV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHYV-09A-01D IL8662 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHYV-09A-01D_CCGTCC.bam	SRR1730902	@dbgap@:reads/SRP011999/SRS835590/SRX813996/SRR1730902/SRR1730902.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPHYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPHYV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYV-14A-01D	DNA	EFO	SRS835516	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPHYV-14A-01D IL8663 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8663	SRX813926	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPHYV-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPHYV-14A-01D IL8663 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPHYV-14A-01D_GTAGAG.bam	SRR1730903	@dbgap@:reads/SRP011999/SRS835516/SRX813926/SRR1730903/SRR1730903.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPICC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPICC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPICC-09A-01D	DNA	EFO	SRS835489	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPICC-09A-01D IL8668 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8668	SRX813897	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPICC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPICC-09A-01D IL8668 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPICC-09A-01D_GGTAGC.bam	SRR1730904	@dbgap@:reads/SRP011999/SRS835489/SRX813897/SRR1730904/SRR1730904.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPICC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPICC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPICC-10A-01D	DNA	EFO	SRS835551	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPICC-10A-01D IL8669 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8669	SRX813962	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPICC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPICC-10A-01D IL8669 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPICC-10A-01D_ACTGAT.bam	SRR1730905	@dbgap@:reads/SRP011999/SRS835551/SRX813962/SRR1730905/SRR1730905.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIEW-09A-01D	DNA	EFO	SRS835497	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIEW-09A-01D IL8676 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.8	IL8676	SRX813906	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIEW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIEW-09A-01D IL8676 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIEW-09A-01D_CACTCA.bam	SRR1730906	@dbgap@:reads/SRP011999/SRS835497/SRX813906/SRR1730906/SRR1730906.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIEW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIEW-10A-01D	DNA	EFO	SRS835550	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIEW-10A-01D IL8677 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8677	SRX813958	P2_B5	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIEW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIEW-10A-01D IL8677 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIEW-10A-01D_CAGGCG.bam	SRR1730907	@dbgap@:reads/SRP011999/SRS835550/SRX813958/SRR1730907/SRR1730907.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGD-09A-01D	DNA	EFO	SRS835572	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIGD-09A-01D IL8696 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL8696	SRX813985	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIGD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIGD-09A-01D IL8696 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIGD-09A-01D_ACTTGA.bam	SRR1730908	@dbgap@:reads/SRP011999/SRS835572/SRX813985/SRR1730908/SRR1730908.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGD-10A-01D	DNA	EFO	SRS835582	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIGD-10A-01D IL8697 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL8697	SRX813991	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIGD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIGD-10A-01D IL8697 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIGD-10A-01D_GATCAG.bam	SRR1730909	@dbgap@:reads/SRP011999/SRS835582/SRX813991/SRR1730909/SRR1730909.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIGV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGV-09A-01D	DNA	EFO	SRS835549	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIGV-09A-01D IL8704 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8704	SRX813959	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIGV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIGV-09A-01D IL8704 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIGV-09A-01D_CCGTCC.bam	SRR1730910	@dbgap@:reads/SRP011999/SRS835549/SRX813959/SRR1730910/SRR1730910.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIGV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGV-14A-01D	DNA	EFO	SRS835511	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIGV-14A-01D IL8705 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.7	IL8705	SRX813920	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIGV-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIGV-14A-01D IL8705 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIGV-14A-01D_GTAGAG.bam	SRR1730911	@dbgap@:reads/SRP011999/SRS835511/SRX813920/SRR1730911/SRR1730911.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIHH-09A-01D	DNA	EFO	SRS835579	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIHH-09A-01D IL8712 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL8712	SRX813993	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIHH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIHH-09A-01D IL8712 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIHH-09A-01D_GGTAGC.bam	SRR1730912	@dbgap@:reads/SRP011999/SRS835579/SRX813993/SRR1730912/SRR1730912.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIHH-10A-01D	DNA	EFO	SRS835576	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIHH-10A-01D IL8713 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL8713	SRX813988	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIHH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIHH-10A-01D IL8713 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIHH-10A-01D_ACTGAT.bam	SRR1730913	@dbgap@:reads/SRP011999/SRS835576/SRX813988/SRR1730913/SRR1730913.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIHT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIHT-09A-01D	DNA	EFO	SRS835554	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIHT-09A-01D IL8720 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8720	SRX813966	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIHT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIHT-09A-01D IL8720 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIHT-09A-01D_CACTCA.bam	SRR1730914	@dbgap@:reads/SRP011999/SRS835554/SRX813966/SRR1730914/SRR1730914.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIHT-10A-01D	DNA	EFO	SRS835548	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIHT-10A-01D IL8721 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.4	IL8721	SRX813957	P2_B6	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIHT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIHT-10A-01D IL8721 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIHT-10A-01D_CAGGCG.bam	SRR1730915	@dbgap@:reads/SRP011999/SRS835548/SRX813957/SRR1730915/SRR1730915.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIHU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIHU-09A-01D	DNA	EFO	SRS835798	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIHU-09A-01D IL8803 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL8803	SRX862374	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIHU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIHU-09A-01D IL8803 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIHU-09A-01D_ATCACG.bam	SRR1783237	@dbgap@:reads/SRP011999/SRS835798/SRX862374/SRR1783237/SRR1783237.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIHU-10A-01D	DNA	EFO	SRS835799	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIHU-10A-01D IL8804 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8804	SRX862375	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIHU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIHU-10A-01D IL8804 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIHU-10A-01D_CGATGT.bam	SRR1783238	@dbgap@:reads/SRP011999/SRS835799/SRX862375/SRR1783238/SRR1783238.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIIB-09A-01D	DNA	EFO	SRS835883	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIIB-09A-01D IL9072 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9072	SRX862459	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIIB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIIB-09A-01D IL9072 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIIB-09A-01D_CATGGC.bam	SRR1783239	@dbgap@:reads/SRP011999/SRS835883/SRX862459/SRR1783239/SRR1783239.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIIB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIIB-10A-01D	DNA	EFO	SRS835807	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIIB-10A-01D IL8812 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL8812	SRX862381	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIIB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIIB-10A-01D IL8812 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIIB-10A-01D_GGCTAC.bam	SRR1783240	@dbgap@:reads/SRP011999/SRS835807/SRX862381/SRR1783240/SRR1783240.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIIX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIIX-09A-01D	DNA	EFO	SRS835810	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIIX-09A-01D IL8819 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8819	SRX862387	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIIX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIIX-09A-01D IL8819 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIIX-09A-01D_GTCCGC.bam	SRR1783241	@dbgap@:reads/SRP011999/SRS835810/SRX862387/SRR1783241/SRR1783241.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIIX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIIX-10A-01D	DNA	EFO	SRS835813	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIIX-10A-01D IL8820 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8820	SRX862388	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIIX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIIX-10A-01D IL8820 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIIX-10A-01D_GTGAAA.bam	SRR1783242	@dbgap@:reads/SRP011999/SRS835813/SRX862388/SRR1783242/SRR1783242.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJD-09A-01D	DNA	EFO	SRS835819	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIJD-09A-01D IL8827 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL8827	SRX862395	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIJD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIJD-09A-01D IL8827 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIJD-09A-01D_ATGAGC.bam	SRR1783243	@dbgap@:reads/SRP011999/SRS835819/SRX862395/SRR1783243/SRR1783243.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIJD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJD-14A-01D	DNA	EFO	SRS835821	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIJD-14A-01D IL8828 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL8828	SRX862396	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIJD-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIJD-14A-01D IL8828 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIJD-14A-01D_ATTCCT.bam	SRR1783244	@dbgap@:reads/SRP011999/SRS835821/SRX862396/SRR1783244/SRR1783244.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPILF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPILF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPILF-09A-01D	DNA	EFO	SRS835826	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPILF-09A-01D IL8886 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8886	SRX862403	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPILF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPILF-09A-01D IL8886 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPILF-09A-01D_ATCACG.bam	SRR1783245	@dbgap@:reads/SRP011999/SRS835826/SRX862403/SRR1783245/SRR1783245.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPILF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPILF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPILF-10A-01D	DNA	EFO	SRS835831	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPILF-10A-01D IL8887 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8887	SRX862404	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPILF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPILF-10A-01D IL8887 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPILF-10A-01D_CGATGT.bam	SRR1783246	@dbgap@:reads/SRP011999/SRS835831/SRX862404/SRR1783246/SRR1783246.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPILG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPILG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPILG-09A-01D	DNA	EFO	SRS1080874	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPILG-09A-01D SJBALL001956_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	58.0114	SJBALL001956_D1_EXCAP_1	SRX1274397		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPILG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPILG-09A-01D SJBALL001956_D1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001956_D1-TARGET-10-PAPILG-09A-01.bam	SRR2485548	@dbgap@:reads/SRP011999/SRS1080874/SRX1274397/SRR2485548/SRR2485548.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPILG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPILG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPILG-10A-01D	DNA	EFO	SRS1080873	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPILG-10A-01D SJBALL001956_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	153	51.1052	SJBALL001956_G1_EXCAP_1	SRX1274398		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPILG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPILG-10A-01D SJBALL001956_G1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001956_G1-TARGET-10-PAPILG-10A-01.bam	SRR2485549	@dbgap@:reads/SRP011999/SRS1080873/SRX1274398/SRR2485549/SRR2485549.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPIPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIPG-09A-01D	DNA	EFO	SRS835834	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIPG-09A-01D IL8894 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8894	SRX862411	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIPG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIPG-09A-01D IL8894 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIPG-09A-01D_TAGCTT.bam	SRR1783247	@dbgap@:reads/SRP011999/SRS835834/SRX862411/SRR1783247/SRR1783247.sra	2	HG19						
TARGET-10-PAPIPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPIPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIPG-10A-01D	DNA	EFO	SRS835833	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPIPG-10A-01D IL8895 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8895	SRX862412	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPIPG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPIPG-10A-01D IL8895 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPIPG-10A-01D_GGCTAC.bam	SRR1783248	@dbgap@:reads/SRP011999/SRS835833/SRX862412/SRR1783248/SRR1783248.sra	2	HG19						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-03A-01D	DNA	EFO	SRS160212	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-03A-01D ING_ALLSRG.PAPJIB03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB03A-1_1pA	SRX090186		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-03A-01D ING_ALLSRG.PAPJIB03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_5.bam	SRR564044	@dbgap@:reads/SRP011999/SRS160212/SRX090186/SRR564044/SRR564044.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-03A-01D	DNA	EFO	SRS160212	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-03A-01D ING_ALLSRG.PAPJIB03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB03A-1_1pA	SRX090186		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-03A-01D ING_ALLSRG.PAPJIB03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_5.bam	SRR564044	@dbgap@:reads/SRP011999/SRS160212/SRX090186/SRR564044/SRR564044.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-03A-01D	DNA	EFO	SRS160212	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-03A-01D ING_ALLSRG.PAPJIB03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB03A-1_1pA	SRX090186		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-03A-01D ING_ALLSRG.PAPJIB03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_5.bam	SRR564044	@dbgap@:reads/SRP011999/SRS160212/SRX090186/SRR564044/SRR564044.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-03A-01D	DNA	EFO	SRS160212	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-03A-01D ING_ALLSRG.PAPJIB03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB03A-1_1pA	SRX090186		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-03A-01D ING_ALLSRG.PAPJIB03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_5.bam	SRR564044	@dbgap@:reads/SRP011999/SRS160212/SRX090186/SRR564044/SRR564044.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-04A-01D ING_ALLSRG.PAPJIB04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB04A-1_1pA	SRX090187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-04A-01D ING_ALLSRG.PAPJIB04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_4.bam	SRR563940	@dbgap@:reads/SRP011999/SRS160213/SRX090187/SRR563940/SRR563940.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-04A-01D ING_ALLSRG.PAPJIB04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB04A-1_1pA	SRX090187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-04A-01D ING_ALLSRG.PAPJIB04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_4.bam	SRR563940	@dbgap@:reads/SRP011999/SRS160213/SRX090187/SRR563940/SRR563940.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-04A-01D ING_ALLSRG.PAPJIB04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB04A-1_1pA	SRX090187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-04A-01D ING_ALLSRG.PAPJIB04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_4.bam	SRR563940	@dbgap@:reads/SRP011999/SRS160213/SRX090187/SRR563940/SRR563940.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-04A-01D ING_ALLSRG.PAPJIB04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB04A-1_1pA	SRX090187		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-04A-01D ING_ALLSRG.PAPJIB04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_4.bam	SRR563940	@dbgap@:reads/SRP011999/SRS160213/SRX090187/SRR563940/SRR563940.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB14A-1_1pA	SRX089143		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_6.bam	SRR563773	@dbgap@:reads/SRP011999/SRS160214/SRX089143/SRR563773/SRR563773.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB14A-1_1pA	SRX089143		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_6.bam	SRR563773	@dbgap@:reads/SRP011999/SRS160214/SRX089143/SRR563773/SRR563773.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB14A-1_1pA	SRX089143		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_6.bam	SRR563773	@dbgap@:reads/SRP011999/SRS160214/SRX089143/SRR563773/SRR563773.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB14A-1_1pA	SRX089143		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_6.bam	SRR563773	@dbgap@:reads/SRP011999/SRS160214/SRX089143/SRR563773/SRR563773.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB14A-1_1pA	SRX089143		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_6.bam	SRR563773	@dbgap@:reads/SRP011999/SRS160214/SRX089143/SRR563773/SRR563773.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPJIB14A-1_1pA	SRX089143		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPJIB-14A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPJIB-14A-01D ING_ALLSRG.PAPJIB14A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_6.bam	SRR563773	@dbgap@:reads/SRP011999/SRS160214/SRX089143/SRR563773/SRR563773.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-03A-01D	DNA	EFO	SRS160215	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-03A-01D ING_ALLSRG.PAPLDL03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPLDL03A-1_1pA	SRX089144		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-03A-01D ING_ALLSRG.PAPLDL03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_7.bam	SRR563771	@dbgap@:reads/SRP011999/SRS160215/SRX089144/SRR563771/SRR563771.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-03A-01D	DNA	EFO	SRS160215	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-03A-01D ING_ALLSRG.PAPLDL03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPLDL03A-1_1pA	SRX089144		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-03A-01D ING_ALLSRG.PAPLDL03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_7.bam	SRR563771	@dbgap@:reads/SRP011999/SRS160215/SRX089144/SRR563771/SRR563771.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-03A-01D	DNA	EFO	SRS160215	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-03A-01D ING_ALLSRG.PAPLDL03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPLDL03A-1_1pA	SRX089144		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-03A-01D ING_ALLSRG.PAPLDL03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_7.bam	SRR563771	@dbgap@:reads/SRP011999/SRS160215/SRX089144/SRR563771/SRR563771.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-03A-01D	DNA	EFO	SRS160215	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-03A-01D ING_ALLSRG.PAPLDL03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPLDL03A-1_1pA	SRX089144		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-03A-01D ING_ALLSRG.PAPLDL03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_7.bam	SRR563771	@dbgap@:reads/SRP011999/SRS160215/SRX089144/SRR563771/SRR563771.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-01D	DNA	EFO	SRS160216	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-04A-01D ING_ALLSRG.PAPLDL04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	155		ING_ALLSRG.PAPLDL04A-1_1pA	SRX278599		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-04A-01D ING_ALLSRG.PAPLDL04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01		110112_SN142_0312_A81A0HABXX_6_bam.bam	SRR851896	@dbgap@:reads/SRP011999/SRS160216/SRX278599/SRR851896/SRR851896.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-01D	DNA	EFO	SRS160216	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-04A-01D ING_ALLSRG.PAPLDL04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	155		ING_ALLSRG.PAPLDL04A-1_1pA	SRX278599		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-04A-01D ING_ALLSRG.PAPLDL04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01		110112_SN142_0312_A81A0HABXX_6_bam.bam	SRR851896	@dbgap@:reads/SRP011999/SRS160216/SRX278599/SRR851896/SRR851896.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-01D	DNA	EFO	SRS160216	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-04A-01D ING_ALLSRG.PAPLDL04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	155		ING_ALLSRG.PAPLDL04A-1_1pA	SRX278599		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-04A-01D ING_ALLSRG.PAPLDL04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01		110112_SN142_0312_A81A0HABXX_6_bam.bam	SRR851896	@dbgap@:reads/SRP011999/SRS160216/SRX278599/SRR851896/SRR851896.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	158		ING_ALLSRG.PAPLDL10A-1_1pA	SRX278600		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01		110112_SN142_0312_A81A0HABXX_7_bam.bam	SRR851897	@dbgap@:reads/SRP011999/SRS160217/SRX278600/SRR851897/SRR851897.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	158		ING_ALLSRG.PAPLDL10A-1_1pA	SRX278600		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01		110112_SN142_0312_A81A0HABXX_7_bam.bam	SRR851897	@dbgap@:reads/SRP011999/SRS160217/SRX278600/SRR851897/SRR851897.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	158		ING_ALLSRG.PAPLDL10A-1_1pA	SRX278600		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01		110112_SN142_0312_A81A0HABXX_7_bam.bam	SRR851897	@dbgap@:reads/SRP011999/SRS160217/SRX278600/SRR851897/SRR851897.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	158		ING_ALLSRG.PAPLDL10A-1_1pA	SRX278600		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01		110112_SN142_0312_A81A0HABXX_7_bam.bam	SRR851897	@dbgap@:reads/SRP011999/SRS160217/SRX278600/SRR851897/SRR851897.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	158		ING_ALLSRG.PAPLDL10A-1_1pA	SRX278600		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPLDL-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPLDL-10A-01D ING_ALLSRG.PAPLDL10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01		110112_SN142_0312_A81A0HABXX_7_bam.bam	SRR851897	@dbgap@:reads/SRP011999/SRS160217/SRX278600/SRR851897/SRR851897.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-03A-01D	DNA	EFO	SRS160218	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-03A-01D ING_ALLSRG.PAPNNX03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX03A-1_1pA	SRX089157		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-03A-01D ING_ALLSRG.PAPNNX03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_8.bam	SRR563990	@dbgap@:reads/SRP011999/SRS160218/SRX089157/SRR563990/SRR563990.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-03A-01D	DNA	EFO	SRS160218	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-03A-01D ING_ALLSRG.PAPNNX03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX03A-1_1pA	SRX089157		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-03A-01D ING_ALLSRG.PAPNNX03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_8.bam	SRR563990	@dbgap@:reads/SRP011999/SRS160218/SRX089157/SRR563990/SRR563990.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-03A-01D	DNA	EFO	SRS160218	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-03A-01D ING_ALLSRG.PAPNNX03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX03A-1_1pA	SRX089157		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-03A-01D ING_ALLSRG.PAPNNX03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_8.bam	SRR563990	@dbgap@:reads/SRP011999/SRS160218/SRX089157/SRR563990/SRR563990.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-03A-01D	DNA	EFO	SRS160218	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-03A-01D ING_ALLSRG.PAPNNX03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX03A-1_1pA	SRX089157		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-03A-01D ING_ALLSRG.PAPNNX03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN166_0159_A813U1ABXX_8.bam	SRR563990	@dbgap@:reads/SRP011999/SRS160218/SRX089157/SRR563990/SRR563990.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-04A-01D	DNA	EFO	SRS160219	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-04A-01D ING_ALLSRG.PAPNNX04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX04A-1_1pA	SRX089190		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-04A-01D ING_ALLSRG.PAPNNX04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_8.bam	SRR564045	@dbgap@:reads/SRP011999/SRS160219/SRX089190/SRR564045/SRR564045.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-04A-01D	DNA	EFO	SRS160219	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-04A-01D ING_ALLSRG.PAPNNX04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX04A-1_1pA	SRX089190		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-04A-01D ING_ALLSRG.PAPNNX04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_8.bam	SRR564045	@dbgap@:reads/SRP011999/SRS160219/SRX089190/SRR564045/SRR564045.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-04A-01D	DNA	EFO	SRS160219	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-04A-01D ING_ALLSRG.PAPNNX04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX04A-1_1pA	SRX089190		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-04A-01D ING_ALLSRG.PAPNNX04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_8.bam	SRR564045	@dbgap@:reads/SRP011999/SRS160219/SRX089190/SRR564045/SRR564045.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-04A-01D	DNA	EFO	SRS160219	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-04A-01D ING_ALLSRG.PAPNNX04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX04A-1_1pA	SRX089190		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-04A-01D ING_ALLSRG.PAPNNX04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110112_SN142_0312_A81A0HABXX_8.bam	SRR564045	@dbgap@:reads/SRP011999/SRS160219/SRX089190/SRR564045/SRR564045.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-10A-01D	DNA	EFO	SRS160220	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX10A-1_1pA	SRX089158		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_1.bam	SRR563941	@dbgap@:reads/SRP011999/SRS160220/SRX089158/SRR563941/SRR563941.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-10A-01D	DNA	EFO	SRS160220	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX10A-1_1pA	SRX089158		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_1.bam	SRR563941	@dbgap@:reads/SRP011999/SRS160220/SRX089158/SRR563941/SRR563941.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-10A-01D	DNA	EFO	SRS160220	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX10A-1_1pA	SRX089158		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_1.bam	SRR563941	@dbgap@:reads/SRP011999/SRS160220/SRX089158/SRR563941/SRR563941.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-10A-01D	DNA	EFO	SRS160220	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX10A-1_1pA	SRX089158		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_1.bam	SRR563941	@dbgap@:reads/SRP011999/SRS160220/SRX089158/SRR563941/SRR563941.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-10A-01D	DNA	EFO	SRS160220	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX10A-1_1pA	SRX089158		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_1.bam	SRR563941	@dbgap@:reads/SRP011999/SRS160220/SRX089158/SRR563941/SRR563941.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPNNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPNNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNNX-10A-01D	DNA	EFO	SRS160220	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PAPNNX10A-1_1pA	SRX089158		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPNNX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPNNX-10A-01D ING_ALLSRG.PAPNNX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_1.bam	SRR563941	@dbgap@:reads/SRP011999/SRS160220/SRX089158/SRR563941/SRR563941.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-03A-01D	DNA	EFO	SRS160221	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-03A-01D ING_ALLSRG.PAPSPG03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG03A-1_1pA	SRX089172		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-03A-01D ING_ALLSRG.PAPSPG03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_1.bam	SRR564088	@dbgap@:reads/SRP011999/SRS160221/SRX089172/SRR564088/SRR564088.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-03A-01D	DNA	EFO	SRS160221	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-03A-01D ING_ALLSRG.PAPSPG03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG03A-1_1pA	SRX089172		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-03A-01D ING_ALLSRG.PAPSPG03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_1.bam	SRR564088	@dbgap@:reads/SRP011999/SRS160221/SRX089172/SRR564088/SRR564088.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-03A-01D	DNA	EFO	SRS160221	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-03A-01D ING_ALLSRG.PAPSPG03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG03A-1_1pA	SRX089172		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-03A-01D ING_ALLSRG.PAPSPG03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_1.bam	SRR564088	@dbgap@:reads/SRP011999/SRS160221/SRX089172/SRR564088/SRR564088.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-03A-01D	DNA	EFO	SRS160221	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-03A-01D ING_ALLSRG.PAPSPG03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG03A-1_1pA	SRX089172		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-03A-01D ING_ALLSRG.PAPSPG03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_1.bam	SRR564088	@dbgap@:reads/SRP011999/SRS160221/SRX089172/SRR564088/SRR564088.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-04A-01D ING_ALLSRG.PAPSPG04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG04A-1_1pA	SRX089173		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-04A-01D ING_ALLSRG.PAPSPG04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_1.bam	SRR563581	@dbgap@:reads/SRP011999/SRS160222/SRX089173/SRR563581/SRR563581.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-04A-01D ING_ALLSRG.PAPSPG04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG04A-1_1pA	SRX089173		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-04A-01D ING_ALLSRG.PAPSPG04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_1.bam	SRR563581	@dbgap@:reads/SRP011999/SRS160222/SRX089173/SRR563581/SRR563581.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-04A-01D ING_ALLSRG.PAPSPG04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG04A-1_1pA	SRX089173		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-04A-01D ING_ALLSRG.PAPSPG04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_1.bam	SRR563581	@dbgap@:reads/SRP011999/SRS160222/SRX089173/SRR563581/SRR563581.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-04A-01D ING_ALLSRG.PAPSPG04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG04A-1_1pA	SRX089173		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-04A-01D ING_ALLSRG.PAPSPG04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_1.bam	SRR563581	@dbgap@:reads/SRP011999/SRS160222/SRX089173/SRR563581/SRR563581.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG10A-1_1pA	SRX089174		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_2.bam	SRR563582	@dbgap@:reads/SRP011999/SRS160223/SRX089174/SRR563582/SRR563582.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG10A-1_1pA	SRX089174		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_2.bam	SRR563582	@dbgap@:reads/SRP011999/SRS160223/SRX089174/SRR563582/SRR563582.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG10A-1_1pA	SRX089174		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_2.bam	SRR563582	@dbgap@:reads/SRP011999/SRS160223/SRX089174/SRR563582/SRR563582.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG10A-1_1pA	SRX089174		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_2.bam	SRR563582	@dbgap@:reads/SRP011999/SRS160223/SRX089174/SRR563582/SRR563582.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG10A-1_1pA	SRX089174		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_2.bam	SRR563582	@dbgap@:reads/SRP011999/SRS160223/SRX089174/SRR563582/SRR563582.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPG10A-1_1pA	SRX089174		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPG-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPG-10A-01D ING_ALLSRG.PAPSPG10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_2.bam	SRR563582	@dbgap@:reads/SRP011999/SRS160223/SRX089174/SRR563582/SRR563582.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-03A-01D	DNA	EFO	SRS160224	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-03A-01D ING_ALLSRG.PAPSPN03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN03A-1_1pA	SRX089175		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-03A-01D ING_ALLSRG.PAPSPN03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_3.bam	SRR563667	@dbgap@:reads/SRP011999/SRS160224/SRX089175/SRR563667/SRR563667.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-03A-01D	DNA	EFO	SRS160224	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-03A-01D ING_ALLSRG.PAPSPN03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN03A-1_1pA	SRX089175		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-03A-01D ING_ALLSRG.PAPSPN03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_3.bam	SRR563667	@dbgap@:reads/SRP011999/SRS160224/SRX089175/SRR563667/SRR563667.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-03A-01D	DNA	EFO	SRS160224	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-03A-01D ING_ALLSRG.PAPSPN03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN03A-1_1pA	SRX089175		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-03A-01D ING_ALLSRG.PAPSPN03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_3.bam	SRR563667	@dbgap@:reads/SRP011999/SRS160224/SRX089175/SRR563667/SRR563667.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-03A-01D	DNA	EFO	SRS160224	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-03A-01D ING_ALLSRG.PAPSPN03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN03A-1_1pA	SRX089175		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-03A-01D ING_ALLSRG.PAPSPN03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_3.bam	SRR563667	@dbgap@:reads/SRP011999/SRS160224/SRX089175/SRR563667/SRR563667.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-04A-01D ING_ALLSRG.PAPSPN04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN04A-1_1pA	SRX089196		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-04A-01D ING_ALLSRG.PAPSPN04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_8.bam	SRR563583	@dbgap@:reads/SRP011999/SRS160225/SRX089196/SRR563583/SRR563583.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-04A-01D ING_ALLSRG.PAPSPN04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN04A-1_1pA	SRX089196		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-04A-01D ING_ALLSRG.PAPSPN04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_8.bam	SRR563583	@dbgap@:reads/SRP011999/SRS160225/SRX089196/SRR563583/SRR563583.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-04A-01D ING_ALLSRG.PAPSPN04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN04A-1_1pA	SRX089196		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-04A-01D ING_ALLSRG.PAPSPN04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_8.bam	SRR563583	@dbgap@:reads/SRP011999/SRS160225/SRX089196/SRR563583/SRR563583.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-04A-01D ING_ALLSRG.PAPSPN04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN04A-1_1pA	SRX089196		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-04A-01D ING_ALLSRG.PAPSPN04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_8.bam	SRR563583	@dbgap@:reads/SRP011999/SRS160225/SRX089196/SRR563583/SRR563583.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-10A-01D	DNA	EFO	SRS160226	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN10A-1_1pA	SRX089163		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_4.bam	SRR564046	@dbgap@:reads/SRP011999/SRS160226/SRX089163/SRR564046/SRR564046.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-10A-01D	DNA	EFO	SRS160226	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN10A-1_1pA	SRX089163		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_4.bam	SRR564046	@dbgap@:reads/SRP011999/SRS160226/SRX089163/SRR564046/SRR564046.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-10A-01D	DNA	EFO	SRS160226	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN10A-1_1pA	SRX089163		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_4.bam	SRR564046	@dbgap@:reads/SRP011999/SRS160226/SRX089163/SRR564046/SRR564046.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-10A-01D	DNA	EFO	SRS160226	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN10A-1_1pA	SRX089163		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_4.bam	SRR564046	@dbgap@:reads/SRP011999/SRS160226/SRX089163/SRR564046/SRR564046.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-10A-01D	DNA	EFO	SRS160226	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN10A-1_1pA	SRX089163		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_4.bam	SRR564046	@dbgap@:reads/SRP011999/SRS160226/SRX089163/SRR564046/SRR564046.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPSPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-10A-01D	DNA	EFO	SRS160226	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPSPN10A-1_1pA	SRX089163		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPSPN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPSPN-10A-01D ING_ALLSRG.PAPSPN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_4.bam	SRR564046	@dbgap@:reads/SRP011999/SRS160226/SRX089163/SRR564046/SRR564046.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-03A-01D	DNA	EFO	SRS160227	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-03A-01D ING_ALLSRG.PAPZNK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK03A-1_1pA	SRX089197		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-03A-01D ING_ALLSRG.PAPZNK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_4.bam	SRR563776	@dbgap@:reads/SRP011999/SRS160227/SRX089197/SRR563776/SRR563776.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-03A-01D	DNA	EFO	SRS160227	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-03A-01D ING_ALLSRG.PAPZNK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK03A-1_1pA	SRX089197		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-03A-01D ING_ALLSRG.PAPZNK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_4.bam	SRR563776	@dbgap@:reads/SRP011999/SRS160227/SRX089197/SRR563776/SRR563776.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-03A-01D	DNA	EFO	SRS160227	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-03A-01D ING_ALLSRG.PAPZNK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK03A-1_1pA	SRX089197		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-03A-01D ING_ALLSRG.PAPZNK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_4.bam	SRR563776	@dbgap@:reads/SRP011999/SRS160227/SRX089197/SRR563776/SRR563776.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-03A-01D	DNA	EFO	SRS160227	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-03A-01D ING_ALLSRG.PAPZNK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK03A-1_1pA	SRX089197		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-03A-01D ING_ALLSRG.PAPZNK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_4.bam	SRR563776	@dbgap@:reads/SRP011999/SRS160227/SRX089197/SRR563776/SRR563776.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-04A-01D ING_ALLSRG.PAPZNK04A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK04A-1_2pA	SRX089164		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-04A-01D ING_ALLSRG.PAPZNK04A-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_1.bam	SRR563778	@dbgap@:reads/SRP011999/SRS160228/SRX089164/SRR563778/SRR563778.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-04A-01D ING_ALLSRG.PAPZNK04A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK04A-1_2pA	SRX089164		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-04A-01D ING_ALLSRG.PAPZNK04A-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_1.bam	SRR563778	@dbgap@:reads/SRP011999/SRS160228/SRX089164/SRR563778/SRR563778.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-04A-01D ING_ALLSRG.PAPZNK04A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK04A-1_2pA	SRX089164		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-04A-01D ING_ALLSRG.PAPZNK04A-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_1.bam	SRR563778	@dbgap@:reads/SRP011999/SRS160228/SRX089164/SRR563778/SRR563778.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-04A-01D ING_ALLSRG.PAPZNK04A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK04A-1_2pA	SRX089164		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-04A-01D ING_ALLSRG.PAPZNK04A-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110124_SN166_0163_A15006043_1.bam	SRR563778	@dbgap@:reads/SRP011999/SRS160228/SRX089164/SRR563778/SRR563778.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK10A-1_1pA	SRX089150		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_5.bam	SRR564048	@dbgap@:reads/SRP011999/SRS160229/SRX089150/SRR564048/SRR564048.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK10A-1_1pA	SRX089150		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_5.bam	SRR564048	@dbgap@:reads/SRP011999/SRS160229/SRX089150/SRR564048/SRR564048.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK10A-1_1pA	SRX089150		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_5.bam	SRR564048	@dbgap@:reads/SRP011999/SRS160229/SRX089150/SRR564048/SRR564048.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK10A-1_1pA	SRX089150		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_5.bam	SRR564048	@dbgap@:reads/SRP011999/SRS160229/SRX089150/SRR564048/SRR564048.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK10A-1_1pA	SRX089150		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_5.bam	SRR564048	@dbgap@:reads/SRP011999/SRS160229/SRX089150/SRR564048/SRR564048.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PAPZNK10A-1_1pA	SRX089150		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PAPZNK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PAPZNK-10A-01D ING_ALLSRG.PAPZNK10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_5.bam	SRR564048	@dbgap@:reads/SRP011999/SRS160229/SRX089150/SRR564048/SRR564048.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PAPZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZPJ-09A-01D	DNA	EFO	SRS1080872	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPZPJ-09A-01D SJBALL001964_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	68.6687	SJBALL001964_D1_EXCAP_1	SRX1274399		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPZPJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPZPJ-09A-01D SJBALL001964_D1_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001964_D1-TARGET-10-PAPZPJ-09A-01.bam	SRR2485550	@dbgap@:reads/SRP011999/SRS1080872/SRX1274399/SRR2485550/SRR2485550.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZPJ-14A-01D	DNA	EFO	SRS1080870	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPZPJ-14A-01D SJBALL001964_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	168	69.864	SJBALL001964_G1_EXCAP_1	SRX1274400		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPZPJ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPZPJ-14A-01D SJBALL001964_G1_EXCAP_1 run	sequencing assay	EFO	164	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001964_G1-TARGET-10-PAPZPJ-14A-01.bam	SRR2485551	@dbgap@:reads/SRP011999/SRS1080870/SRX1274400/SRR2485551/SRR2485551.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZPZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZPZ-09A-01D	DNA	EFO	SRS835842	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZPZ-09A-01D IL8902 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL8902	SRX862419	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZPZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZPZ-09A-01D IL8902 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZPZ-09A-01D_GTCCGC.bam	SRR1783249	@dbgap@:reads/SRP011999/SRS835842/SRX862419/SRR1783249/SRR1783249.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZPZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZPZ-10A-01D	DNA	EFO	SRS835844	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZPZ-10A-01D IL8903 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8903	SRX862420	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZPZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZPZ-10A-01D IL8903 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZPZ-10A-01D_GTGAAA.bam	SRR1783250	@dbgap@:reads/SRP011999/SRS835844/SRX862420/SRR1783250/SRR1783250.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZRA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZRA-09A-01D	DNA	EFO	SRS1080871	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPZRA-09A-01D SJBALL001972_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	144	42.6314	SJBALL001972_D1_EXCAP_1	SRX1274401		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPZRA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPZRA-09A-01D SJBALL001972_D1_EXCAP_1 run	sequencing assay	EFO	164	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001972_D1-TARGET-10-PAPZRA-09A-01.bam	SRR2485552	@dbgap@:reads/SRP011999/SRS1080871/SRX1274401/SRR2485552/SRR2485552.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZRA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZRA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZRA-10A-01D	DNA	EFO	SRS1080869	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPZRA-10A-01D SJBALL001972_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	48.5982	SJBALL001972_G1_EXCAP_1	SRX1274402		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPZRA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPZRA-10A-01D SJBALL001972_G1_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001972_G1-TARGET-10-PAPZRA-10A-01.bam	SRR2485553	@dbgap@:reads/SRP011999/SRS1080869/SRX1274402/SRR2485553/SRR2485553.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZRB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZRB-09A-01D	DNA	EFO	SRS835886	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZRB-09A-01D IL9188 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9188	SRX862461	P3_B9	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZRB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZRB-09A-01D IL9188 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZRB-09A-01D_ATCACG.bam	SRR1783251	@dbgap@:reads/SRP011999/SRS835886/SRX862461/SRR1783251/SRR1783251.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZRB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZRB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZRB-10A-01D	DNA	EFO	SRS835884	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZRB-10A-01D IL9189 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL9189	SRX862462	P3_B9	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZRB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZRB-10A-01D IL9189 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZRB-10A-01D_CGATGT.bam	SRR1783252	@dbgap@:reads/SRP011999/SRS835884/SRX862462/SRR1783252/SRR1783252.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZTD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZTD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZTD-09A-01D	DNA	EFO	SRS835853	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZTD-09A-01D IL8999 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL8999	SRX862427	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZTD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZTD-09A-01D IL8999 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZTD-09A-01D_ATCACG.bam	SRR1783253	@dbgap@:reads/SRP011999/SRS835853/SRX862427/SRR1783253/SRR1783253.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZTD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZTD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZTD-10A-01D	DNA	EFO	SRS835855	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZTD-10A-01D IL9000 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9000	SRX862428	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZTD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZTD-10A-01D IL9000 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZTD-10A-01D_CGATGT.bam	SRR1783254	@dbgap@:reads/SRP011999/SRS835855/SRX862428/SRR1783254/SRR1783254.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZTL-09A-01D	DNA	EFO	SRS835858	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZTL-09A-01D IL9007 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9007	SRX862435	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZTL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZTL-09A-01D IL9007 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZTL-09A-01D_TAGCTT.bam	SRR1783255	@dbgap@:reads/SRP011999/SRS835858/SRX862435/SRR1783255/SRR1783255.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZTL-10A-01D	DNA	EFO	SRS835869	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZTL-10A-01D IL9008 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL9008	SRX862436	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZTL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZTL-10A-01D IL9008 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZTL-10A-01D_GGCTAC.bam	SRR1783256	@dbgap@:reads/SRP011999/SRS835869/SRX862436/SRR1783256/SRR1783256.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZTS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZTS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZTS-09A-01D	DNA	EFO	SRS835865	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZTS-09A-01D IL9015 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9015	SRX862443	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZTS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZTS-09A-01D IL9015 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZTS-09A-01D_GTCCGC.bam	SRR1783257	@dbgap@:reads/SRP011999/SRS835865/SRX862443/SRR1783257/SRR1783257.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZTS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZTS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZTS-14A-01D	DNA	EFO	SRS835875	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZTS-14A-01D IL9016 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9016	SRX862444	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZTS-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZTS-14A-01D IL9016 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZTS-14A-01D_GTGAAA.bam	SRR1783258	@dbgap@:reads/SRP011999/SRS835875/SRX862444/SRR1783258/SRR1783258.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZUE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZUE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZUE-03A-01D	DNA	EFO	SRS835881	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZUE-03A-01D IL9023 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9023	SRX862451	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZUE-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZUE-03A-01D IL9023 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZUE-03A-01D_ATGAGC.bam	SRR1783259	@dbgap@:reads/SRP011999/SRS835881/SRX862451/SRR1783259/SRR1783259.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZUE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZUE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZUE-10A-01D	DNA	EFO	SRS835873	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZUE-10A-01D IL9024 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9024	SRX862452	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZUE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZUE-10A-01D IL9024 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZUE-10A-01D_ATTCCT.bam	SRR1783260	@dbgap@:reads/SRP011999/SRS835873/SRX862452/SRR1783260/SRR1783260.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZUW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZUW-09A-01D	DNA	EFO	SRS835800	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZUW-09A-01D IL8805 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL8805	SRX862376	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZUW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZUW-09A-01D IL8805 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZUW-09A-01D_TGACCA.bam	SRR1783261	@dbgap@:reads/SRP011999/SRS835800/SRX862376/SRR1783261/SRR1783261.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZUW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZUW-10A-01D	DNA	EFO	SRS835802	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZUW-10A-01D IL8806 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8806	SRX862377	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZUW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZUW-10A-01D IL8806 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZUW-10A-01D_ACAGTG.bam	SRR1783262	@dbgap@:reads/SRP011999/SRS835802/SRX862377/SRR1783262/SRR1783262.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZVI-09A-01D	DNA	EFO	SRS1080868	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPZVI-09A-01D SJBALL001953_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	65.6804	SJBALL001953_D1_EXCAP_1	SRX1274403		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPZVI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPZVI-09A-01D SJBALL001953_D1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001953_D1-TARGET-10-PAPZVI-09A-01.bam	SRR2485554	@dbgap@:reads/SRP011999/SRS1080868/SRX1274403/SRR2485554/SRR2485554.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZVI-10A-01D	DNA	EFO	SRS1080867	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAPZVI-10A-01D SJBALL001953_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	58.0543	SJBALL001953_G1_EXCAP_1	SRX1274404		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAPZVI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PAPZVI-10A-01D SJBALL001953_G1_EXCAP_1 run	sequencing assay	EFO	179	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001953_G1-TARGET-10-PAPZVI-10A-01.bam	SRR2485555	@dbgap@:reads/SRP011999/SRS1080867/SRX1274404/SRR2485555/SRR2485555.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZWP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZWP-09A-01D	DNA	EFO	SRS835805	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZWP-09A-01D IL8813 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8813	SRX862382	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZWP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZWP-09A-01D IL8813 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZWP-09A-01D_CTTGTA.bam	SRR1783263	@dbgap@:reads/SRP011999/SRS835805/SRX862382/SRR1783263/SRR1783263.sra	2	HG19						
TARGET-10-PAPZWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZWP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZWP-10A-01D	DNA	EFO	SRS835806	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZWP-10A-01D IL8814 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL8814	SRX862383	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZWP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZWP-10A-01D IL8814 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZWP-10A-01D_AGTCAA.bam	SRR1783264	@dbgap@:reads/SRP011999/SRS835806/SRX862383/SRR1783264/SRR1783264.sra	2	HG19						
TARGET-10-PAPZXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZXI-09A-01D	DNA	EFO	SRS835812	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZXI-09A-01D IL8821 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8821	SRX862389	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZXI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZXI-09A-01D IL8821 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZXI-09A-01D_GTGGCC.bam	SRR1783265	@dbgap@:reads/SRP011999/SRS835812/SRX862389/SRR1783265/SRR1783265.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZXI-10A-01D	DNA	EFO	SRS835815	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZXI-10A-01D IL8822 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8822	SRX862390	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZXI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZXI-10A-01D IL8822 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZXI-10A-01D_GTTTCG.bam	SRR1783266	@dbgap@:reads/SRP011999/SRS835815/SRX862390/SRR1783266/SRR1783266.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZZJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZZJ-09A-01D	DNA	EFO	SRS835820	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZZJ-09A-01D IL8829 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8829	SRX862397	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZZJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZZJ-09A-01D IL8829 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZZJ-09A-01D_CAAAAG.bam	SRR1783267	@dbgap@:reads/SRP011999/SRS835820/SRX862397/SRR1783267/SRR1783267.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAPZZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAPZZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZZJ-10A-01D	DNA	EFO	SRS835822	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAPZZJ-10A-01D IL8830 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL8830	SRX862398	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAPZZJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAPZZJ-10A-01D IL8830 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAPZZJ-10A-01D_CAACTA.bam	SRR1783268	@dbgap@:reads/SRP011999/SRS835822/SRX862398/SRR1783268/SRR1783268.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARABL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARABL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARABL-09A-01D	DNA	EFO	SRS835828	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARABL-09A-01D IL8888 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL8888	SRX862405	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARABL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARABL-09A-01D IL8888 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARABL-09A-01D_TGACCA.bam	SRR1783269	@dbgap@:reads/SRP011999/SRS835828/SRX862405/SRR1783269/SRR1783269.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARABL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARABL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARABL-10A-01D	DNA	EFO	SRS835829	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARABL-10A-01D IL8889 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8889	SRX862406	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARABL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARABL-10A-01D IL8889 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARABL-10A-01D_ACAGTG.bam	SRR1783270	@dbgap@:reads/SRP011999/SRS835829/SRX862406/SRR1783270/SRR1783270.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARABU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARABU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARABU-09A-01D	DNA	EFO	SRS835835	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARABU-09A-01D IL8896 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL8896	SRX862413	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARABU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARABU-09A-01D IL8896 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARABU-09A-01D_CTTGTA.bam	SRR1783271	@dbgap@:reads/SRP011999/SRS835835/SRX862413/SRR1783271/SRR1783271.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARABU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARABU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARABU-10A-01D	DNA	EFO	SRS835838	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARABU-10A-01D IL8897 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL8897	SRX862414	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARABU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARABU-10A-01D IL8897 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARABU-10A-01D_AGTCAA.bam	SRR1783272	@dbgap@:reads/SRP011999/SRS835838/SRX862414/SRR1783272/SRR1783272.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARACE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARACE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACE-09A-01D	DNA	EFO	SRS835846	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARACE-09A-01D IL8904 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL8904	SRX862421	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARACE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARACE-09A-01D IL8904 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARACE-09A-01D_GTGGCC.bam	SRR1783273	@dbgap@:reads/SRP011999/SRS835846/SRX862421/SRR1783273/SRR1783273.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARACE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARACE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACE-10A-01D	DNA	EFO	SRS835847	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARACE-10A-01D IL8905 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL8905	SRX862422	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARACE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARACE-10A-01D IL8905 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARACE-10A-01D_GTTTCG.bam	SRR1783274	@dbgap@:reads/SRP011999/SRS835847/SRX862422/SRR1783274/SRR1783274.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAFH-09A-01D	DNA	EFO	SRS835885	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAFH-09A-01D IL9190 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL9190	SRX862463	P3_B9	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAFH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAFH-09A-01D IL9190 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAFH-09A-01D_TGACCA.bam	SRR1783275	@dbgap@:reads/SRP011999/SRS835885/SRX862463/SRR1783275/SRR1783275.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAFH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAFH-10A-01D	DNA	EFO	SRS835889	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAFH-10A-01D IL9191 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9191	SRX862464	P3_B9	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAFH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAFH-10A-01D IL9191 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAFH-10A-01D_ACAGTG.bam	SRR1783276	@dbgap@:reads/SRP011999/SRS835889/SRX862464/SRR1783276/SRR1783276.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAFI-09A-01D	DNA	EFO	SRS835852	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAFI-09A-01D IL9001 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9001	SRX862429	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAFI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAFI-09A-01D IL9001 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAFI-09A-01D_TGACCA.bam	SRR1783277	@dbgap@:reads/SRP011999/SRS835852/SRX862429/SRR1783277/SRR1783277.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAFI-10A-01D	DNA	EFO	SRS835851	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAFI-10A-01D IL9002 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9002	SRX862430	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAFI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAFI-10A-01D IL9002 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAFI-10A-01D_ACAGTG.bam	SRR1783278	@dbgap@:reads/SRP011999/SRS835851/SRX862430/SRR1783278/SRR1783278.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAGW-09A-01D	DNA	EFO	SRS835859	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAGW-09A-01D IL9009 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL9009	SRX862437	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAGW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAGW-09A-01D IL9009 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAGW-09A-01D_CTTGTA.bam	SRR1783279	@dbgap@:reads/SRP011999/SRS835859/SRX862437/SRR1783279/SRR1783279.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAGW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAGW-10A-01D	DNA	EFO	SRS835860	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAGW-10A-01D IL9010 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9010	SRX862438	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAGW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAGW-10A-01D IL9010 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAGW-10A-01D_AGTCAA.bam	SRR1783280	@dbgap@:reads/SRP011999/SRS835860/SRX862438/SRR1783280/SRR1783280.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAJY-09A-01D	DNA	EFO	SRS835866	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAJY-09A-01D IL9017 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9017	SRX862445	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAJY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAJY-09A-01D IL9017 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAJY-09A-01D_GTGGCC.bam	SRR1783281	@dbgap@:reads/SRP011999/SRS835866/SRX862445/SRR1783281/SRR1783281.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAJY-10A-01D	DNA	EFO	SRS835867	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAJY-10A-01D IL9018 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9018	SRX862446	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAJY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAJY-10A-01D IL9018 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAJY-10A-01D_GTTTCG.bam	SRR1783282	@dbgap@:reads/SRP011999/SRS835867/SRX862446/SRR1783282/SRR1783282.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-03A-01D	DNA	EFO	SRS160230	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-03A-01D ING_ALLSRG.PARAKF03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF03A-1_1pA	SRX089151		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-03A-01D ING_ALLSRG.PARAKF03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_6.bam	SRR563943	@dbgap@:reads/SRP011999/SRS160230/SRX089151/SRR563943/SRR563943.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-03A-01D	DNA	EFO	SRS160230	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-03A-01D ING_ALLSRG.PARAKF03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF03A-1_1pA	SRX089151		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-03A-01D ING_ALLSRG.PARAKF03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_6.bam	SRR563943	@dbgap@:reads/SRP011999/SRS160230/SRX089151/SRR563943/SRR563943.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-03A-01D	DNA	EFO	SRS160230	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-03A-01D ING_ALLSRG.PARAKF03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF03A-1_1pA	SRX089151		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-03A-01D ING_ALLSRG.PARAKF03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_6.bam	SRR563943	@dbgap@:reads/SRP011999/SRS160230/SRX089151/SRR563943/SRR563943.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-03A-01D	DNA	EFO	SRS160230	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-03A-01D ING_ALLSRG.PARAKF03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF03A-1_1pA	SRX089151		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-03A-01D ING_ALLSRG.PARAKF03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_6.bam	SRR563943	@dbgap@:reads/SRP011999/SRS160230/SRX089151/SRR563943/SRR563943.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-04A-01D ING_ALLSRG.PARAKF04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF04A-1_1pA	SRX089152		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-04A-01D ING_ALLSRG.PARAKF04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_7.bam	SRR564050	@dbgap@:reads/SRP011999/SRS160231/SRX089152/SRR564050/SRR564050.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-04A-01D ING_ALLSRG.PARAKF04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF04A-1_1pA	SRX089152		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-04A-01D ING_ALLSRG.PARAKF04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_7.bam	SRR564050	@dbgap@:reads/SRP011999/SRS160231/SRX089152/SRR564050/SRR564050.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-04A-01D ING_ALLSRG.PARAKF04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF04A-1_1pA	SRX089152		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-04A-01D ING_ALLSRG.PARAKF04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_7.bam	SRR564050	@dbgap@:reads/SRP011999/SRS160231/SRX089152/SRR564050/SRR564050.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-04A-01D ING_ALLSRG.PARAKF04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF04A-1_1pA	SRX089152		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-04A-01D ING_ALLSRG.PARAKF04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_7.bam	SRR564050	@dbgap@:reads/SRP011999/SRS160231/SRX089152/SRR564050/SRR564050.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF10A-1_1pA	SRX089153		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_8.bam	SRR563991	@dbgap@:reads/SRP011999/SRS160232/SRX089153/SRR563991/SRR563991.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF10A-1_1pA	SRX089153		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_8.bam	SRR563991	@dbgap@:reads/SRP011999/SRS160232/SRX089153/SRR563991/SRR563991.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF10A-1_1pA	SRX089153		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_8.bam	SRR563991	@dbgap@:reads/SRP011999/SRS160232/SRX089153/SRR563991/SRR563991.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF10A-1_1pA	SRX089153		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_8.bam	SRR563991	@dbgap@:reads/SRP011999/SRS160232/SRX089153/SRR563991/SRR563991.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF10A-1_1pA	SRX089153		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_8.bam	SRR563991	@dbgap@:reads/SRP011999/SRS160232/SRX089153/SRR563991/SRR563991.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARAKF10A-1_1pA	SRX089153		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARAKF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARAKF-10A-01D ING_ALLSRG.PARAKF10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110105_SN580_0037_A815CJABXX_8.bam	SRR563991	@dbgap@:reads/SRP011999/SRS160232/SRX089153/SRR563991/SRR563991.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARANN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARANN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARANN-09A-01D	DNA	EFO	SRS835874	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARANN-09A-01D IL9025 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9025	SRX862453	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARANN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARANN-09A-01D IL9025 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARANN-09A-01D_CAAAAG.bam	SRR1783283	@dbgap@:reads/SRP011999/SRS835874/SRX862453/SRR1783283/SRR1783283.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARANN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARANN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARANN-10A-01D	DNA	EFO	SRS835877	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARANN-10A-01D IL9026 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL9026	SRX862454	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARANN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARANN-10A-01D IL9026 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARANN-10A-01D_CAACTA.bam	SRR1783284	@dbgap@:reads/SRP011999/SRS835877/SRX862454/SRR1783284/SRR1783284.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPT-09A-01D	DNA	EFO	SRS835801	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAPT-09A-01D IL8807 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8807	SRX862378	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAPT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAPT-09A-01D IL8807 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAPT-09A-01D_GCCAAT.bam	SRR1783285	@dbgap@:reads/SRP011999/SRS835801/SRX862378/SRR1783285/SRR1783285.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPT-10A-01D	DNA	EFO	SRS891155	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAPT-10A-01D IL11624 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL11624	SRX975837	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAPT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAPT-10A-01D IL11624 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAPT-10A-01D_CAGATC.bam	SRR1949572	@dbgap@:reads/SRP011999/SRS891155/SRX975837/SRR1949572/SRR1949572.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARASC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARASC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARASC-09A-01D	DNA	EFO	SRS835887	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARASC-09A-01D IL9073 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9073	SRX862460	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARASC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARASC-09A-01D IL9073 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARASC-09A-01D_CATTTT.bam	SRR1783286	@dbgap@:reads/SRP011999/SRS835887/SRX862460/SRR1783286/SRR1783286.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARASC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARASC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARASC-10A-01D	DNA	EFO	SRS835808	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARASC-10A-01D IL8816 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL8816	SRX862384	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARASC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARASC-10A-01D IL8816 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARASC-10A-01D_ATGTCA.bam	SRR1783287	@dbgap@:reads/SRP011999/SRS835808/SRX862384/SRR1783287/SRR1783287.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARASN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARASN-09A-01D	DNA	EFO	SRS835814	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARASN-09A-01D IL8823 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8823	SRX862391	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARASN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARASN-09A-01D IL8823 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARASN-09A-01D_CGTACG.bam	SRR1783288	@dbgap@:reads/SRP011999/SRS835814/SRX862391/SRR1783288/SRR1783288.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARASN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARASN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARASN-10A-01D	DNA	EFO	SRS835816	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARASN-10A-01D IL8824 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL8824	SRX862392	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARASN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARASN-10A-01D IL8824 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARASN-10A-01D_GAGTGG.bam	SRR1783289	@dbgap@:reads/SRP011999/SRS835816/SRX862392/SRR1783289/SRR1783289.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARASZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARASZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARASZ-09A-01D	DNA	EFO	SRS835872	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARASZ-09A-01D IL9021 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL9021	SRX862449	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARASZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARASZ-09A-01D IL9021 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARASZ-09A-01D_GGTAGC.bam	SRR1783290	@dbgap@:reads/SRP011999/SRS835872/SRX862449/SRR1783290/SRR1783290.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARASZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARASZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARASZ-10A-01D	DNA	EFO	SRS835871	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARASZ-10A-01D IL9022 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9022	SRX862450	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARASZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARASZ-10A-01D IL9022 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARASZ-10A-01D_ACTGAT.bam	SRR1783291	@dbgap@:reads/SRP011999/SRS835871/SRX862450/SRR1783291/SRR1783291.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARATY-09A-01D	DNA	EFO	SRS835823	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARATY-09A-01D IL8831 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL8831	SRX862399	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARATY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARATY-09A-01D IL8831 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARATY-09A-01D_CACCGG.bam	SRR1783292	@dbgap@:reads/SRP011999/SRS835823/SRX862399/SRR1783292/SRR1783292.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARATY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARATY-10A-01D	DNA	EFO	SRS835824	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARATY-10A-01D IL8832 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL8832	SRX862400	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARATY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARATY-10A-01D IL8832 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARATY-10A-01D_CACGAT.bam	SRR1783293	@dbgap@:reads/SRP011999/SRS835824/SRX862400/SRR1783293/SRR1783293.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAUE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAUE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAUE-09A-01D	DNA	EFO	SRS835836	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAUE-09A-01D IL8890 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8890	SRX862407	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAUE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAUE-09A-01D IL8890 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAUE-09A-01D_GCCAAT.bam	SRR1783294	@dbgap@:reads/SRP011999/SRS835836/SRX862407/SRR1783294/SRR1783294.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAUE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAUE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAUE-14A-01D	DNA	EFO	SRS835830	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAUE-14A-01D IL8891 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL8891	SRX862408	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAUE-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAUE-14A-01D IL8891 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAUE-14A-01D_CAGATC.bam	SRR1783295	@dbgap@:reads/SRP011999/SRS835830/SRX862408/SRR1783295/SRR1783295.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAXH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAXH-09A-01D	DNA	EFO	SRS835840	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAXH-09A-01D IL8898 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL8898	SRX862415	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAXH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAXH-09A-01D IL8898 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAXH-09A-01D_AGTTCC.bam	SRR1783296	@dbgap@:reads/SRP011999/SRS835840/SRX862415/SRR1783296/SRR1783296.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAXH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAXH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAXH-10A-01D	DNA	EFO	SRS835839	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAXH-10A-01D IL8899 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8899	SRX862416	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAXH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAXH-10A-01D IL8899 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAXH-10A-01D_ATGTCA.bam	SRR1783297	@dbgap@:reads/SRP011999/SRS835839/SRX862416/SRR1783297/SRR1783297.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAYM-09A-01D	DNA	EFO	SRS835878	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAYM-09A-01D IL9029 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9029	SRX862457	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAYM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAYM-09A-01D IL9029 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAYM-09A-01D_CACTCA.bam	SRR1783298	@dbgap@:reads/SRP011999/SRS835878/SRX862457/SRR1783298/SRR1783298.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAYM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAYM-10A-01D	DNA	EFO	SRS835882	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAYM-10A-01D IL9030 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9030	SRX862458	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAYM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAYM-10A-01D IL9030 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAYM-10A-01D_CAGGCG.bam	SRR1783299	@dbgap@:reads/SRP011999/SRS835882/SRX862458/SRR1783299/SRR1783299.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAZN-09A-01D	DNA	EFO	SRS835848	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAZN-09A-01D IL8906 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL8906	SRX862423	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAZN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAZN-09A-01D IL8906 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAZN-09A-01D_CGTACG.bam	SRR1783300	@dbgap@:reads/SRP011999/SRS835848/SRX862423/SRR1783300/SRR1783300.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARAZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARAZN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAZN-10A-01D	DNA	EFO	SRS835845	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARAZN-10A-01D IL8907 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL8907	SRX862424	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARAZN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARAZN-10A-01D IL8907 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARAZN-10A-01D_GAGTGG.bam	SRR1783301	@dbgap@:reads/SRP011999/SRS835845/SRX862424/SRR1783301/SRR1783301.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBBV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBBV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBBV-09A-01D	DNA	EFO	SRS835888	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBBV-09A-01D IL9192 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9192	SRX862465	P3_B9	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBBV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBBV-09A-01D IL9192 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBBV-09A-01D_GCCAAT.bam	SRR1783302	@dbgap@:reads/SRP011999/SRS835888/SRX862465/SRR1783302/SRR1783302.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBBV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBBV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBBV-10A-01D	DNA	EFO	SRS835892	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBBV-10A-01D IL9193 library	PAIRED	GENOMIC	WXS	Hybrid Selection	220	29.7	IL9193	SRX862466	P3_B9	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBBV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBBV-10A-01D IL9193 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBBV-10A-01D_CAGATC.bam	SRR1783303	@dbgap@:reads/SRP011999/SRS835892/SRX862466/SRR1783303/SRR1783303.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBCW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBCW-09A-01D	DNA	EFO	SRS835863	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBCW-09A-01D IL9003 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9003	SRX862431	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBCW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBCW-09A-01D IL9003 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBCW-09A-01D_GCCAAT.bam	SRR1783304	@dbgap@:reads/SRP011999/SRS835863/SRX862431/SRR1783304/SRR1783304.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBCW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBCW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBCW-10A-01D	DNA	EFO	SRS835854	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBCW-10A-01D IL9004 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9004	SRX862432	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBCW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBCW-10A-01D IL9004 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBCW-10A-01D_CAGATC.bam	SRR1783305	@dbgap@:reads/SRP011999/SRS835854/SRX862432/SRR1783305/SRR1783305.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBDP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBDP-09A-01D	DNA	EFO	SRS835870	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBDP-09A-01D IL9011 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9011	SRX862439	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBDP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBDP-09A-01D IL9011 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBDP-09A-01D_AGTTCC.bam	SRR1783306	@dbgap@:reads/SRP011999/SRS835870/SRX862439/SRR1783306/SRR1783306.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBDP-10A-01D	DNA	EFO	SRS835861	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBDP-10A-01D IL9012 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9012	SRX862440	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBDP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBDP-10A-01D IL9012 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBDP-10A-01D_ATGTCA.bam	SRR1783307	@dbgap@:reads/SRP011999/SRS835861/SRX862440/SRR1783307/SRR1783307.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBGG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGG-09A-01D	DNA	EFO	SRS835868	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBGG-09A-01D IL9019 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9019	SRX862447	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBGG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBGG-09A-01D IL9019 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBGG-09A-01D_CGTACG.bam	SRR1783308	@dbgap@:reads/SRP011999/SRS835868/SRX862447/SRR1783308/SRR1783308.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBGG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGG-10A-01D	DNA	EFO	SRS835880	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBGG-10A-01D IL9020 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9020	SRX862448	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBGG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBGG-10A-01D IL9020 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBGG-10A-01D_GAGTGG.bam	SRR1783309	@dbgap@:reads/SRP011999/SRS835880/SRX862448/SRR1783309/SRR1783309.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBHI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBHI-09A-01D	DNA	EFO	SRS1080866	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARBHI-09A-01D SJBALL001994_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	164	65.9586	SJBALL001994_D1_EXCAP_1	SRX1274405		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARBHI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARBHI-09A-01D SJBALL001994_D1_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001994_D1-TARGET-10-PARBHI-09A-01.bam	SRR2485556	@dbgap@:reads/SRP011999/SRS1080866/SRX1274405/SRR2485556/SRR2485556.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBHI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBHI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBHI-10A-01D	DNA	EFO	SRS1080865	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARBHI-10A-01D SJBALL001994_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	74.5614	SJBALL001994_G1_EXCAP_1	SRX1274406		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARBHI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARBHI-10A-01D SJBALL001994_G1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001994_G1-TARGET-10-PARBHI-10A-01.bam	SRR2485557	@dbgap@:reads/SRP011999/SRS1080865/SRX1274406/SRR2485557/SRR2485557.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBIX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBIX-03A-01D	DNA	EFO	SRS835876	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBIX-03A-01D IL9027 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9027	SRX862455	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBIX-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBIX-03A-01D IL9027 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBIX-03A-01D_CACCGG.bam	SRR1783310	@dbgap@:reads/SRP011999/SRS835876/SRX862455/SRR1783310/SRR1783310.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBIX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBIX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBIX-10A-01D	DNA	EFO	SRS835879	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBIX-10A-01D IL9028 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9028	SRX862456	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBIX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBIX-10A-01D IL9028 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBIX-10A-01D_CACGAT.bam	SRR1783311	@dbgap@:reads/SRP011999/SRS835879/SRX862456/SRR1783311/SRR1783311.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBKG-09A-01D	DNA	EFO	SRS835803	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBKG-09A-01D IL8809 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL8809	SRX862379	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBKG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBKG-09A-01D IL8809 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBKG-09A-01D_ACTTGA.bam	SRR1783312	@dbgap@:reads/SRP011999/SRS835803/SRX862379/SRR1783312/SRR1783312.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBKG-10A-01D	DNA	EFO	SRS835804	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBKG-10A-01D IL8810 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL8810	SRX862380	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBKG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBKG-10A-01D IL8810 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBKG-10A-01D_GATCAG.bam	SRR1783313	@dbgap@:reads/SRP011999/SRS835804/SRX862380/SRR1783313/SRR1783313.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBKP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBKP-09A-01D	DNA	EFO	SRS835811	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBKP-09A-01D IL8817 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL8817	SRX862385	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBKP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBKP-09A-01D IL8817 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBKP-09A-01D_CCGTCC.bam	SRR1783314	@dbgap@:reads/SRP011999/SRS835811/SRX862385/SRR1783314/SRR1783314.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBKP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBKP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBKP-10A-01D	DNA	EFO	SRS835809	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBKP-10A-01D IL8818 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL8818	SRX862386	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBKP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBKP-10A-01D IL8818 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBKP-10A-01D_GTAGAG.bam	SRR1783315	@dbgap@:reads/SRP011999/SRS835809/SRX862386/SRR1783315/SRR1783315.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBLL-09A-01D	DNA	EFO	SRS835817	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBLL-09A-01D IL8825 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL8825	SRX862393	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBLL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBLL-09A-01D IL8825 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBLL-09A-01D_GGTAGC.bam	SRR1783316	@dbgap@:reads/SRP011999/SRS835817/SRX862393/SRR1783316/SRR1783316.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBLL-10A-01D	DNA	EFO	SRS835818	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBLL-10A-01D IL8826 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL8826	SRX862394	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBLL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBLL-10A-01D IL8826 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBLL-10A-01D_ACTGAT.bam	SRR1783317	@dbgap@:reads/SRP011999/SRS835818/SRX862394/SRR1783317/SRR1783317.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBLS-09A-01D	DNA	EFO	SRS835825	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBLS-09A-01D IL8833 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL8833	SRX862401	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBLS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBLS-09A-01D IL8833 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBLS-09A-01D_CACTCA.bam	SRR1783318	@dbgap@:reads/SRP011999/SRS835825/SRX862401/SRR1783318/SRR1783318.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBLS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBLS-10A-01D	DNA	EFO	SRS835827	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBLS-10A-01D IL8834 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL8834	SRX862402	P3_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBLS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBLS-10A-01D IL8834 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBLS-10A-01D_CAGGCG.bam	SRR1783319	@dbgap@:reads/SRP011999/SRS835827/SRX862402/SRR1783319/SRR1783319.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBND-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBND-09A-01D	DNA	EFO	SRS835837	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBND-09A-01D IL8892 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8892	SRX862409	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBND-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBND-09A-01D IL8892 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBND-09A-01D_ACTTGA.bam	SRR1783320	@dbgap@:reads/SRP011999/SRS835837/SRX862409/SRR1783320/SRR1783320.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBND	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBND-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBND-10A-01D	DNA	EFO	SRS835832	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBND-10A-01D IL8893 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8893	SRX862410	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBND-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBND-10A-01D IL8893 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBND-10A-01D_GATCAG.bam	SRR1783321	@dbgap@:reads/SRP011999/SRS835832/SRX862410/SRR1783321/SRR1783321.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBNY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBNY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBNY-09A-01D	DNA	EFO	SRS835841	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBNY-09A-01D IL8900 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL8900	SRX862417	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBNY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBNY-09A-01D IL8900 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBNY-09A-01D_CCGTCC.bam	SRR1783322	@dbgap@:reads/SRP011999/SRS835841/SRX862417/SRR1783322/SRR1783322.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBNY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBNY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBNY-10A-01D	DNA	EFO	SRS835843	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBNY-10A-01D IL8901 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL8901	SRX862418	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBNY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBNY-10A-01D IL8901 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBNY-10A-01D_GTAGAG.bam	SRR1783323	@dbgap@:reads/SRP011999/SRS835843/SRX862418/SRR1783323/SRR1783323.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBPX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBPX-09A-01D	DNA	EFO	SRS835850	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBPX-09A-01D IL8908 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL8908	SRX862425	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBPX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBPX-09A-01D IL8908 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBPX-09A-01D_GGTAGC.bam	SRR1783324	@dbgap@:reads/SRP011999/SRS835850/SRX862425/SRR1783324/SRR1783324.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBPX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBPX-10A-01D	DNA	EFO	SRS835849	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBPX-10A-01D IL8909 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL8909	SRX862426	P3_B8	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBPX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBPX-10A-01D IL8909 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBPX-10A-01D_ACTGAT.bam	SRR1783325	@dbgap@:reads/SRP011999/SRS835849/SRX862426/SRR1783325/SRR1783325.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-03A-01D	DNA	EFO	SRS160233	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-03A-01D ING_ALLSRG.PARBRK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK03A-1_1pA	SRX089165		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-03A-01D ING_ALLSRG.PARBRK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_1.bam	SRR563584	@dbgap@:reads/SRP011999/SRS160233/SRX089165/SRR563584/SRR563584.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-03A-01D	DNA	EFO	SRS160233	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-03A-01D ING_ALLSRG.PARBRK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK03A-1_1pA	SRX089165		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-03A-01D ING_ALLSRG.PARBRK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_1.bam	SRR563584	@dbgap@:reads/SRP011999/SRS160233/SRX089165/SRR563584/SRR563584.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-03A-01D	DNA	EFO	SRS160233	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-03A-01D ING_ALLSRG.PARBRK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK03A-1_1pA	SRX089165		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-03A-01D ING_ALLSRG.PARBRK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_1.bam	SRR563584	@dbgap@:reads/SRP011999/SRS160233/SRX089165/SRR563584/SRR563584.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-03A-01D	DNA	EFO	SRS160233	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-03A-01D ING_ALLSRG.PARBRK03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK03A-1_1pA	SRX089165		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-03A-01D ING_ALLSRG.PARBRK03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_1.bam	SRR563584	@dbgap@:reads/SRP011999/SRS160233/SRX089165/SRR563584/SRR563584.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-04A-01D ING_ALLSRG.PARBRK04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK04A-1_1pA	SRX090595		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-04A-01D ING_ALLSRG.PARBRK04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_6.bam	SRR564872	@dbgap@:reads/SRP011999/SRS160234/SRX090595/SRR564872/SRR564872.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-04A-01D ING_ALLSRG.PARBRK04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK04A-1_1pA	SRX090595		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-04A-01D ING_ALLSRG.PARBRK04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_6.bam	SRR564872	@dbgap@:reads/SRP011999/SRS160234/SRX090595/SRR564872/SRR564872.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-04A-01D ING_ALLSRG.PARBRK04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK04A-1_1pA	SRX090595		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-04A-01D ING_ALLSRG.PARBRK04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_6.bam	SRR564872	@dbgap@:reads/SRP011999/SRS160234/SRX090595/SRR564872/SRR564872.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-04A-01D ING_ALLSRG.PARBRK04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK04A-1_1pA	SRX090595		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-04A-01D ING_ALLSRG.PARBRK04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_6.bam	SRR564872	@dbgap@:reads/SRP011999/SRS160234/SRX090595/SRR564872/SRR564872.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK10A-1_1pA	SRX089198		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_2.bam	SRR563585	@dbgap@:reads/SRP011999/SRS160235/SRX089198/SRR563585/SRR563585.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK10A-1_1pA	SRX089198		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_2.bam	SRR563585	@dbgap@:reads/SRP011999/SRS160235/SRX089198/SRR563585/SRR563585.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK10A-1_1pA	SRX089198		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_2.bam	SRR563585	@dbgap@:reads/SRP011999/SRS160235/SRX089198/SRR563585/SRR563585.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK10A-1_1pA	SRX089198		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_2.bam	SRR563585	@dbgap@:reads/SRP011999/SRS160235/SRX089198/SRR563585/SRR563585.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK10A-1_1pA	SRX089198		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_2.bam	SRR563585	@dbgap@:reads/SRP011999/SRS160235/SRX089198/SRR563585/SRR563585.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARBRK10A-1_1pA	SRX089198		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARBRK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARBRK-10A-01D ING_ALLSRG.PARBRK10A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_2.bam	SRR563585	@dbgap@:reads/SRP011999/SRS160235/SRX089198/SRR563585/SRR563585.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARBRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRM-09A-01D	DNA	EFO	SRS835762	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBRM-09A-01D IL10093 library	PAIRED	GENOMIC	WXS	Hybrid Selection	179	26.8	IL10093	SRX862330	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBRM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBRM-09A-01D IL10093 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBRM-09A-01D_GTTTCG.bam	SRR1783423	@dbgap@:reads/SRP011999/SRS835762/SRX862330/SRR1783423/SRR1783423.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBRM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRM-10A-01D	DNA	EFO	SRS835752	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBRM-10A-01D IL10094 library	PAIRED	GENOMIC	WXS	Hybrid Selection	179	26.8	IL10094	SRX862331	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBRM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBRM-10A-01D IL10094 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBRM-10A-01D_CGTACG.bam	SRR1783424	@dbgap@:reads/SRP011999/SRS835752/SRX862331/SRR1783424/SRR1783424.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBRV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRV-09A-01D	DNA	EFO	SRS835890	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBRV-09A-01D IL9194 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9194	SRX862467	P3_B9	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBRV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBRV-09A-01D IL9194 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBRV-09A-01D_ACTTGA.bam	SRR1783326	@dbgap@:reads/SRP011999/SRS835890/SRX862467/SRR1783326/SRR1783326.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBRV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRV-10A-01D	DNA	EFO	SRS835891	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBRV-10A-01D IL9195 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9195	SRX862468	P3_B9	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBRV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBRV-10A-01D IL9195 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBRV-10A-01D_GATCAG.bam	SRR1783327	@dbgap@:reads/SRP011999/SRS835891/SRX862468/SRR1783327/SRR1783327.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBRX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRX-09A-01D	DNA	EFO	SRS835857	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBRX-09A-01D IL9005 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9005	SRX862433	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBRX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBRX-09A-01D IL9005 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBRX-09A-01D_ACTTGA.bam	SRR1783328	@dbgap@:reads/SRP011999/SRS835857/SRX862433/SRR1783328/SRR1783328.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBRX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBRX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRX-10A-01D	DNA	EFO	SRS835856	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBRX-10A-01D IL9006 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9006	SRX862434	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBRX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBRX-10A-01D IL9006 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBRX-10A-01D_GATCAG.bam	SRR1783329	@dbgap@:reads/SRP011999/SRS835856/SRX862434/SRR1783329/SRR1783329.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBSP-09A-01D	DNA	EFO	SRS835862	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBSP-09A-01D IL9013 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9013	SRX862441	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBSP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBSP-09A-01D IL9013 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBSP-09A-01D_CCGTCC.bam	SRR1783330	@dbgap@:reads/SRP011999/SRS835862/SRX862441/SRR1783330/SRR1783330.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBSP-10A-01D	DNA	EFO	SRS835864	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBSP-10A-01D IL9014 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9014	SRX862442	P3_B10	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBSP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBSP-10A-01D IL9014 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBSP-10A-01D_GTAGAG.bam	SRR1783331	@dbgap@:reads/SRP011999/SRS835864/SRX862442/SRR1783331/SRR1783331.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBSW-09A-01D	DNA	EFO	SRS891228	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBSW-09A-01D IL11762 library	PAIRED	GENOMIC	WXS	Hybrid Selection	226	30.1	IL11762	SRX975765	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBSW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBSW-09A-01D IL11762 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBSW-09A-01D_ATCACG.bam	SRR1949573	@dbgap@:reads/SRP011999/SRS891228/SRX975765/SRR1949573/SRR1949573.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBSW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBSW-10A-01D	DNA	EFO	SRS891200	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBSW-10A-01D IL11763 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11763	SRX975791	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBSW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBSW-10A-01D IL11763 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBSW-10A-01D_CGATGT.bam	SRR1949574	@dbgap@:reads/SRP011999/SRS891200/SRX975791/SRR1949574/SRR1949574.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBTA-09A-01D	DNA	EFO	SRS945117	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBTA-09A-01D IL11770 library	PAIRED	GENOMIC	WXS	Hybrid Selection	239	30.9	IL11770	SRX1037878	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBTA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBTA-09A-01D IL11770 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBTA-09A-01D_GATCAG.bam	SRR2039480	@dbgap@:reads/SRP011999/SRS945117/SRX1037878/SRR2039480/SRR2039480.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBTA-10A-01D	DNA	EFO	SRS945116	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBTA-10A-01D IL11771 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11771	SRX1037879	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBTA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBTA-10A-01D IL11771 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBTA-10A-01D_TAGCTT_L001.bam	SRR2039481	@dbgap@:reads/SRP011999/SRS945116/SRX1037879/SRR2039481/SRR2039481.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBWN-09A-01D	DNA	EFO	SRS835761	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBWN-09A-01D IL10101 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10101	SRX862338	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBWN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBWN-09A-01D IL10101 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBWN-09A-01D_CAACTA.bam	SRR1783425	@dbgap@:reads/SRP011999/SRS835761/SRX862338/SRR1783425/SRR1783425.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBWN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBWN-10A-01D	DNA	EFO	SRS835763	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBWN-10A-01D IL10102 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10102	SRX862339	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBWN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBWN-10A-01D IL10102 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBWN-10A-01D_CACCGG.bam	SRR1783426	@dbgap@:reads/SRP011999/SRS835763/SRX862339/SRR1783426/SRR1783426.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBXX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBXX-09A-01D	DNA	EFO	SRS945115	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBXX-09A-01D IL11778 library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	29.5	IL11778	SRX1037880	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBXX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBXX-09A-01D IL11778 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBXX-09A-01D_GTAGAG_L002.bam	SRR2039482	@dbgap@:reads/SRP011999/SRS945115/SRX1037880/SRR2039482/SRR2039482.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBXX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBXX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBXX-10A-01D	DNA	EFO	SRS945114	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBXX-10A-01D IL11779 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11779	SRX1037881	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBXX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBXX-10A-01D IL11779 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBXX-10A-01D_GTCCGC_L002.bam	SRR2039483	@dbgap@:reads/SRP011999/SRS945114/SRX1037881/SRR2039483/SRR2039483.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBYS-09A-01D	DNA	EFO	SRS945113	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBYS-09A-01D IL11786 library	PAIRED	GENOMIC	WXS	Hybrid Selection	228	30.2	IL11786	SRX1037882	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBYS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBYS-09A-01D IL11786 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBYS-09A-01D_ACTGAT_L004.bam	SRR2039484	@dbgap@:reads/SRP011999/SRS945113/SRX1037882/SRR2039484/SRR2039484.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBYS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBYS-10A-01D	DNA	EFO	SRS945112	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBYS-10A-01D IL11787 library	PAIRED	GENOMIC	WXS	Hybrid Selection	217	29.5	IL11787	SRX1037883	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBYS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBYS-10A-01D IL11787 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBYS-10A-01D_ATGAGC_L004.bam	SRR2039485	@dbgap@:reads/SRP011999/SRS945112/SRX1037883/SRR2039485/SRR2039485.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBYU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBYU-09A-01D	DNA	EFO	SRS945110	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBYU-09A-01D IL11794 library	PAIRED	GENOMIC	WXS	Hybrid Selection	217	29.5	IL11794	SRX1037884	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBYU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBYU-09A-01D IL11794 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBYU-09A-01D_CAGGCG_L005.bam	SRR2039486	@dbgap@:reads/SRP011999/SRS945110/SRX1037884/SRR2039486/SRR2039486.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBYU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBYU-10A-01D	DNA	EFO	SRS945111	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBYU-10A-01D IL11795 library	PAIRED	GENOMIC	WXS	Hybrid Selection	226	30.1	IL11795	SRX1037885	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBYU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBYU-10A-01D IL11795 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBYU-10A-01D_CATGGC_L005.bam	SRR2039487	@dbgap@:reads/SRP011999/SRS945111/SRX1037885/SRR2039487/SRR2039487.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARBZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBZT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBZT-09A-01D	DNA	EFO	SRS835770	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBZT-09A-01D IL10134 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10134	SRX862346	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBZT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBZT-09A-01D IL10134 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBZT-09A-01D_ACAGTG.bam	SRR1783427	@dbgap@:reads/SRP011999/SRS835770/SRX862346/SRR1783427/SRR1783427.sra	2	HG19						
TARGET-10-PARBZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARBZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBZT-10A-01D	DNA	EFO	SRS835772	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARBZT-10A-01D IL10135 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10135	SRX862347	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARBZT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARBZT-10A-01D IL10135 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARBZT-10A-01D_GCCAAT.bam	SRR1783428	@dbgap@:reads/SRP011999/SRS835772/SRX862347/SRR1783428/SRR1783428.sra	2	HG19						
TARGET-10-PARCAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCAX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCAX-09A-01D	DNA	EFO	SRS891213	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCAX-09A-01D IL11802 library	PAIRED	GENOMIC	WXS	Hybrid Selection	230	30.3	IL11802	SRX975779	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCAX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCAX-09A-01D IL11802 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCAX-09A-01D_GACGAC.bam	SRR1949575	@dbgap@:reads/SRP011999/SRS891213/SRX975779/SRR1949575/SRR1949575.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCAX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCAX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCAX-10A-01D	DNA	EFO	SRS891166	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCAX-10A-01D IL11803 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11803	SRX975827	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCAX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCAX-10A-01D IL11803 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCAX-10A-01D_TAATCG.bam	SRR1949576	@dbgap@:reads/SRP011999/SRS891166/SRX975827/SRR1949576/SRR1949576.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCBE-09A-01D	DNA	EFO	SRS891186	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCBE-09A-01D IL11810 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL11810	SRX975804	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCBE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCBE-09A-01D IL11810 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCBE-09A-01D_ATCACG.bam	SRR1949577	@dbgap@:reads/SRP011999/SRS891186/SRX975804/SRR1949577/SRR1949577.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCBE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCBE-10A-01D	DNA	EFO	SRS891152	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCBE-10A-01D IL11811 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL11811	SRX975839	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCBE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCBE-10A-01D IL11811 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCBE-10A-01D_CGATGT.bam	SRR1949578	@dbgap@:reads/SRP011999/SRS891152/SRX975839/SRR1949578/SRR1949578.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCBK-09A-01D	DNA	EFO	SRS1080864	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARCBK-09A-01D SJBALL002157_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	60.7729	SJBALL002157_D1_EXCAP_1	SRX1274407		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARCBK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PARCBK-09A-01D SJBALL002157_D1_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002157_D1-TARGET-10-PARCBK-09A-01D.bam	SRR2485558	@dbgap@:reads/SRP011999/SRS1080864/SRX1274407/SRR2485558/SRR2485558.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCBK-10A-01D	DNA	EFO	SRS1080863	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARCBK-10A-01D SJBALL002157_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	50.3081	SJBALL002157_G1_EXCAP_1	SRX1274408		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARCBK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PARCBK-10A-01D SJBALL002157_G1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002157_G1-TARGET-10-PARCBK-10A-01D.bam	SRR2485559	@dbgap@:reads/SRP011999/SRS1080863/SRX1274408/SRR2485559/SRR2485559.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCCM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCCM-09A-01D	DNA	EFO	SRS891201	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCCM-09A-01D IL11818 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11818	SRX975790	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCCM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCCM-09A-01D IL11818 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCCM-09A-01D_GATCAG.bam	SRR1949579	@dbgap@:reads/SRP011999/SRS891201/SRX975790/SRR1949579/SRR1949579.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCCM-10A-01D	DNA	EFO	SRS891176	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCCM-10A-01D IL11819 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11819	SRX975814	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCCM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCCM-10A-01D IL11819 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCCM-10A-01D_TAGCTT.bam	SRR1949580	@dbgap@:reads/SRP011999/SRS891176/SRX975814/SRR1949580/SRR1949580.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCDS-09A-01D	DNA	EFO	SRS835777	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCDS-09A-01D IL10142 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10142	SRX862354	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCDS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCDS-09A-01D IL10142 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCDS-09A-01D_AGTCAA.bam	SRR1783429	@dbgap@:reads/SRP011999/SRS835777/SRX862354/SRR1783429/SRR1783429.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCDS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCDS-10A-01D	DNA	EFO	SRS835778	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCDS-10A-01D IL10143 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10143	SRX862355	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCDS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCDS-10A-01D IL10143 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCDS-10A-01D_AGTTCC.bam	SRR1783430	@dbgap@:reads/SRP011999/SRS835778/SRX862355/SRR1783430/SRR1783430.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCDV-09A-01D	DNA	EFO	SRS835785	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCDV-09A-01D IL10150 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10150	SRX862362	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCDV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCDV-09A-01D IL10150 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCDV-09A-01D_GTTTCG.bam	SRR1783431	@dbgap@:reads/SRP011999/SRS835785/SRX862362/SRR1783431/SRR1783431.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCDV-10A-01D	DNA	EFO	SRS835787	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCDV-10A-01D IL10151 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10151	SRX862363	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCDV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCDV-10A-01D IL10151 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCDV-10A-01D_CGTACG.bam	SRR1783432	@dbgap@:reads/SRP011999/SRS835787/SRX862363/SRR1783432/SRR1783432.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCDX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCDX-09A-01D	DNA	EFO	SRS891214	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCDX-09A-01D IL11862 library	PAIRED	GENOMIC	WXS	Hybrid Selection	226	30.1	IL11862	SRX975778	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCDX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCDX-09A-01D IL11862 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCDX-09A-01D_ATCACG.bam	SRR1949581	@dbgap@:reads/SRP011999/SRS891214/SRX975778/SRR1949581/SRR1949581.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCDX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCDX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCDX-10A-01D	DNA	EFO	SRS891193	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCDX-10A-01D IL11863 library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	29.5	IL11863	SRX975799	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCDX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCDX-10A-01D IL11863 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCDX-10A-01D_CGATGT.bam	SRR1949582	@dbgap@:reads/SRP011999/SRS891193/SRX975799/SRR1949582/SRR1949582.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCDZ-09A-01D	DNA	EFO	SRS891160	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCDZ-09A-01D IL11870 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11870	SRX975831	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCDZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCDZ-09A-01D IL11870 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCDZ-09A-01D_GATCAG.bam	SRR1949583	@dbgap@:reads/SRP011999/SRS891160/SRX975831/SRR1949583/SRR1949583.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCDZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCDZ-10A-01D	DNA	EFO	SRS891149	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCDZ-10A-01D IL11871 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11871	SRX975843	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCDZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCDZ-10A-01D IL11871 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCDZ-10A-01D_TAGCTT.bam	SRR1949584	@dbgap@:reads/SRP011999/SRS891149/SRX975843/SRR1949584/SRR1949584.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCFM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCFM-09A-01D	DNA	EFO	SRS835793	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCFM-09A-01D IL10158 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10158	SRX862370	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCFM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCFM-09A-01D IL10158 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCFM-09A-01D_CAACTA.bam	SRR1783433	@dbgap@:reads/SRP011999/SRS835793/SRX862370/SRR1783433/SRR1783433.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCFM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCFM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCFM-10A-01D	DNA	EFO	SRS835795	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCFM-10A-01D IL10159 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10159	SRX862371	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCFM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCFM-10A-01D IL10159 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCFM-10A-01D_CACCGG.bam	SRR1783434	@dbgap@:reads/SRP011999/SRS835795/SRX862371/SRR1783434/SRR1783434.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCGU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCGU-09A-01D	DNA	EFO	SRS835710	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCGU-09A-01D IL10047 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10047	SRX862286	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCGU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCGU-09A-01D IL10047 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCGU-09A-01D_CAGATC.bam	SRR1783435	@dbgap@:reads/SRP011999/SRS835710/SRX862286/SRR1783435/SRR1783435.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCGU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCGU-10A-01D	DNA	EFO	SRS835711	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCGU-10A-01D IL10048 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10048	SRX862287	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCGU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCGU-10A-01D IL10048 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCGU-10A-01D_ACTTGA.bam	SRR1783436	@dbgap@:reads/SRP011999/SRS835711/SRX862287/SRR1783436/SRR1783436.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCHU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHU-09A-01D	DNA	EFO	SRS891158	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCHU-09A-01D IL11878 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL11878	SRX975834	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCHU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCHU-09A-01D IL11878 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCHU-09A-01D_GTAGAG.bam	SRR1949585	@dbgap@:reads/SRP011999/SRS891158/SRX975834/SRR1949585/SRR1949585.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCHU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCHU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHU-10A-01D	DNA	EFO	SRS891133	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCHU-10A-01D IL11879 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL11879	SRX975861	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCHU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCHU-10A-01D IL11879 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCHU-10A-01D_GTCCGC.bam	SRR1949586	@dbgap@:reads/SRP011999/SRS891133/SRX975861/SRR1949586/SRR1949586.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCHY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHY-09A-01D	DNA	EFO	SRS891178	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCHY-09A-01D IL11886 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL11886	SRX975813	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCHY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCHY-09A-01D IL11886 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCHY-09A-01D_ACTGAT.bam	SRR1949587	@dbgap@:reads/SRP011999/SRS891178/SRX975813/SRR1949587/SRR1949587.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHY-10A-01D	DNA	EFO	SRS891145	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCHY-10A-01D IL11887 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11887	SRX975849	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCHY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCHY-10A-01D IL11887 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCHY-10A-01D_ATGAGC.bam	SRR1949588	@dbgap@:reads/SRP011999/SRS891145/SRX975849/SRR1949588/SRR1949588.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCKD-09A-01D	DNA	EFO	SRS891207	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCKD-09A-01D IL11764 library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	29.8	IL11764	SRX975785	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCKD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCKD-09A-01D IL11764 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCKD-09A-01D_TTAGGC.bam	SRR1949589	@dbgap@:reads/SRP011999/SRS891207/SRX975785/SRR1949589/SRR1949589.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCKD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCKD-10A-01D	DNA	EFO	SRS891180	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCKD-10A-01D IL11765 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11765	SRX975810	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCKD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCKD-10A-01D IL11765 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCKD-10A-01D_TGACCA.bam	SRR1949590	@dbgap@:reads/SRP011999/SRS891180/SRX975810/SRR1949590/SRR1949590.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCKJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCKJ-03A-01D	DNA	EFO	SRS945109	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCKJ-03A-01D IL11772 library	PAIRED	GENOMIC	WXS	Hybrid Selection	225	30	IL11772	SRX1037886	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCKJ-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCKJ-03A-01D IL11772 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCKJ-03A-01D_GGCTAC_L001.bam	SRR2039488	@dbgap@:reads/SRP011999/SRS945109/SRX1037886/SRR2039488/SRR2039488.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCKJ-10A-01D	DNA	EFO	SRS945108	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCKJ-10A-01D IL11773 library	PAIRED	GENOMIC	WXS	Hybrid Selection	233	30.5	IL11773	SRX1037887	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCKJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCKJ-10A-01D IL11773 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCKJ-10A-01D_CTTGTA_L001.bam	SRR2039489	@dbgap@:reads/SRP011999/SRS945108/SRX1037887/SRR2039489/SRR2039489.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCKV-09A-01D	DNA	EFO	SRS945107	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCKV-09A-01D IL11780 library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	29.8	IL11780	SRX1037888	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCKV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCKV-09A-01D IL11780 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCKV-09A-01D_GTGAAA_L002.bam	SRR2039490	@dbgap@:reads/SRP011999/SRS945107/SRX1037888/SRR2039490/SRR2039490.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCKV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCKV-10A-01D	DNA	EFO	SRS945106	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCKV-10A-01D IL11781 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11781	SRX1037889	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCKV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCKV-10A-01D IL11781 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCKV-10A-01D_GTGGCC_L003.bam	SRR2039491	@dbgap@:reads/SRP011999/SRS945106/SRX1037889/SRR2039491/SRR2039491.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCLU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCLU-09A-01D	DNA	EFO	SRS835721	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCLU-09A-01D IL10055 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10055	SRX862294	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCLU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCLU-09A-01D IL10055 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCLU-09A-01D_ATGTCA.bam	SRR1783437	@dbgap@:reads/SRP011999/SRS835721/SRX862294/SRR1783437/SRR1783437.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCLU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCLU-10A-01D	DNA	EFO	SRS835717	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCLU-10A-01D IL10056 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10056	SRX862295	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCLU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCLU-10A-01D IL10056 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCLU-10A-01D_CCGTCC.bam	SRR1783438	@dbgap@:reads/SRP011999/SRS835717/SRX862295/SRR1783438/SRR1783438.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCLW-09A-01D	DNA	EFO	SRS945105	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCLW-09A-01D IL11788 library	PAIRED	GENOMIC	WXS	Hybrid Selection	220	29.7	IL11788	SRX1037890	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCLW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCLW-09A-01D IL11788 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCLW-09A-01D_ATTCCT_L004.bam	SRR2039492	@dbgap@:reads/SRP011999/SRS945105/SRX1037890/SRR2039492/SRR2039492.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCLW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCLW-10A-01D	DNA	EFO	SRS945104	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCLW-10A-01D IL11789 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL11789	SRX1037891	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCLW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCLW-10A-01D IL11789 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCLW-10A-01D_CAAAAG_L004.bam	SRR2039493	@dbgap@:reads/SRP011999/SRS945104/SRX1037891/SRR2039493/SRR2039493.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCMD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCMD-03A-01D	DNA	EFO	SRS945102	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCMD-03A-01D IL11796 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11796	SRX1037892	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCMD-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCMD-03A-01D IL11796 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCMD-03A-01D_CATTTT_L006.bam	SRR2039494	@dbgap@:reads/SRP011999/SRS945102/SRX1037892/SRR2039494/SRR2039494.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCMD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCMD-10A-01D	DNA	EFO	SRS945103	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCMD-10A-01D IL11797 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11797	SRX1037893	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCMD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCMD-10A-01D IL11797 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCMD-10A-01D_CCAACA_L006.bam	SRR2039495	@dbgap@:reads/SRP011999/SRS945103/SRX1037893/SRR2039495/SRR2039495.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCMG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCMG-03A-01D	DNA	EFO	SRS835723	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCMG-03A-01D IL10063 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10063	SRX862302	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCMG-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCMG-03A-01D IL10063 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCMG-03A-01D_GAGTGG.bam	SRR1783439	@dbgap@:reads/SRP011999/SRS835723/SRX862302/SRR1783439/SRR1783439.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCMG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCMG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCMG-10A-01D	DNA	EFO	SRS835726	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCMG-10A-01D IL10064 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10064	SRX862303	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCMG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCMG-10A-01D IL10064 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCMG-10A-01D_GGTAGC.bam	SRR1783440	@dbgap@:reads/SRP011999/SRS835726/SRX862303/SRR1783440/SRR1783440.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCSH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCSH-09A-01D	DNA	EFO	SRS835733	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCSH-09A-01D IL10071 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL10071	SRX862310	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCSH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCSH-09A-01D IL10071 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCSH-09A-01D_CACGAT.bam	SRR1783441	@dbgap@:reads/SRP011999/SRS835733/SRX862310/SRR1783441/SRR1783441.sra	2	HG19						
TARGET-10-PARCSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCSH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCSH-10A-01D	DNA	EFO	SRS835742	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCSH-10A-01D IL10072 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL10072	SRX862311	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCSH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCSH-10A-01D IL10072 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCSH-10A-01D_CACTCA.bam	SRR1783442	@dbgap@:reads/SRP011999/SRS835742/SRX862311/SRR1783442/SRR1783442.sra	2	HG19						
TARGET-10-PARCTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCTN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCTN-09A-01D	DNA	EFO	SRS835741	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCTN-09A-01D IL10079 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10079	SRX862318	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCTN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCTN-09A-01D IL10079 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCTN-09A-01D_CAGATC.bam	SRR1783443	@dbgap@:reads/SRP011999/SRS835741/SRX862318/SRR1783443/SRR1783443.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCTN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCTN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCTN-10A-01D	DNA	EFO	SRS835739	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCTN-10A-01D IL10080 library	PAIRED	GENOMIC	WXS	Hybrid Selection	179	26.8	IL10080	SRX862319	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCTN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCTN-10A-01D IL10080 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCTN-10A-01D_ACTTGA.bam	SRR1783444	@dbgap@:reads/SRP011999/SRS835739/SRX862319/SRR1783444/SRR1783444.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCUM-09A-01D	DNA	EFO	SRS835754	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCUM-09A-01D IL10087 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10087	SRX862325	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCUM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCUM-09A-01D IL10087 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCUM-09A-01D_ATGTCA.bam	SRR1783445	@dbgap@:reads/SRP011999/SRS835754/SRX862325/SRR1783445/SRR1783445.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCUM-10A-01D	DNA	EFO	SRS945071	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCUM-10A-01D IL12224 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL12224	SRX1037925	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCUM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCUM-10A-01D IL12224 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCUM-10A-01D_GATCAG.bam	SRR2039517	@dbgap@:reads/SRP011999/SRS945071/SRX1037925/SRR2039517/SRR2039517.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCUW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCUW-09A-01D	DNA	EFO	SRS891169	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCUW-09A-01D IL11804 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11804	SRX975822	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCUW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCUW-09A-01D IL11804 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCUW-09A-01D_TACAGC.bam	SRR1949591	@dbgap@:reads/SRP011999/SRS891169/SRX975822/SRR1949591/SRR1949591.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCUW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCUW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCUW-10A-01D	DNA	EFO	SRS891148	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCUW-10A-01D IL11805 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11805	SRX975844	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCUW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCUW-10A-01D IL11805 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCUW-10A-01D_TATAAT.bam	SRR1949592	@dbgap@:reads/SRP011999/SRS891148/SRX975844/SRR1949592/SRR1949592.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCVB-09A-01D	DNA	EFO	SRS891146	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCVB-09A-01D IL11812 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL11812	SRX975848	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCVB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCVB-09A-01D IL11812 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCVB-09A-01D_TTAGGC.bam	SRR1949593	@dbgap@:reads/SRP011999/SRS891146/SRX975848/SRR1949593/SRR1949593.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCVB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCVB-10A-01D	DNA	EFO	SRS891150	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCVB-10A-01D IL11813 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11813	SRX975842	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCVB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCVB-10A-01D IL11813 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCVB-10A-01D_TGACCA.bam	SRR1949594	@dbgap@:reads/SRP011999/SRS891150/SRX975842/SRR1949594/SRR1949594.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCVM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCVM-03A-01D	DNA	EFO	SRS835634	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCVM-03A-01D IL9134 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9134	SRX849254	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCVM-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCVM-03A-01D IL9134 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCVM-03A-01D_CACTCA.bam	SRR1767934	@dbgap@:reads/SRP011999/SRS835634/SRX849254/SRR1767934/SRR1767934.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCVM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCVM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCVM-10A-01D	DNA	EFO	SRS891196	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCVM-10A-01D IL11632 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL11632	SRX975795	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCVM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCVM-10A-01D IL11632 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCVM-10A-01D_ATGTCA.bam	SRR1949595	@dbgap@:reads/SRP011999/SRS891196/SRX975795/SRR1949595/SRR1949595.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCVT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCVT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCVT-09A-01D	DNA	EFO	SRS835753	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCVT-09A-01D IL10095 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10095	SRX862332	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCVT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCVT-09A-01D IL10095 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCVT-09A-01D_GAGTGG.bam	SRR1783446	@dbgap@:reads/SRP011999/SRS835753/SRX862332/SRR1783446/SRR1783446.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCVT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCVT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCVT-10A-01D	DNA	EFO	SRS835755	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCVT-10A-01D IL10096 library	PAIRED	GENOMIC	WXS	Hybrid Selection	179	26.8	IL10096	SRX862333	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCVT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCVT-10A-01D IL10096 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCVT-10A-01D_GGTAGC.bam	SRR1783447	@dbgap@:reads/SRP011999/SRS835755/SRX862333/SRR1783447/SRR1783447.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCWB-09A-01D	DNA	EFO	SRS891170	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCWB-09A-01D IL11820 library	PAIRED	GENOMIC	WXS	Hybrid Selection	224	29.9	IL11820	SRX975820	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCWB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCWB-09A-01D IL11820 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCWB-09A-01D_GGCTAC.bam	SRR1949596	@dbgap@:reads/SRP011999/SRS891170/SRX975820/SRR1949596/SRR1949596.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCWB-10A-01D	DNA	EFO	SRS891153	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCWB-10A-01D IL11821 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11821	SRX975840	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCWB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCWB-10A-01D IL11821 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCWB-10A-01D_CTTGTA.bam	SRR1949597	@dbgap@:reads/SRP011999/SRS891153/SRX975840/SRR1949597/SRR1949597.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCZY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCZY-09A-01D	DNA	EFO	SRS835764	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCZY-09A-01D IL10103 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL10103	SRX862340	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCZY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCZY-09A-01D IL10103 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCZY-09A-01D_CACGAT.bam	SRR1783448	@dbgap@:reads/SRP011999/SRS835764/SRX862340/SRR1783448/SRR1783448.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARCZY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARCZY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCZY-10A-01D	DNA	EFO	SRS835767	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARCZY-10A-01D IL10104 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10104	SRX862341	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARCZY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARCZY-10A-01D IL10104 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARCZY-10A-01D_CACTCA.bam	SRR1783449	@dbgap@:reads/SRP011999/SRS835767/SRX862341/SRR1783449/SRR1783449.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDAK-09A-01D	DNA	EFO	SRS835771	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDAK-09A-01D IL10136 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL10136	SRX862348	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDAK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDAK-09A-01D IL10136 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDAK-09A-01D_CAGATC.bam	SRR1783450	@dbgap@:reads/SRP011999/SRS835771/SRX862348/SRR1783450/SRR1783450.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDAK-10A-01D	DNA	EFO	SRS835775	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDAK-10A-01D IL10137 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10137	SRX862349	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDAK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDAK-10A-01D IL10137 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDAK-10A-01D_ACTTGA.bam	SRR1783451	@dbgap@:reads/SRP011999/SRS835775/SRX862349/SRR1783451/SRR1783451.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDBN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDBN-09A-01D	DNA	EFO	SRS835780	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDBN-09A-01D IL10144 library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	29.3	IL10144	SRX862356	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDBN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDBN-09A-01D IL10144 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDBN-09A-01D_ATGTCA.bam	SRR1783452	@dbgap@:reads/SRP011999/SRS835780/SRX862356/SRR1783452/SRR1783452.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDBN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDBN-10A-01D	DNA	EFO	SRS835781	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDBN-10A-01D IL10145 library	PAIRED	GENOMIC	WXS	Hybrid Selection	224	29.9	IL10145	SRX862357	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDBN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDBN-10A-01D IL10145 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDBN-10A-01D_CCGTCC.bam	SRR1783453	@dbgap@:reads/SRP011999/SRS835781/SRX862357/SRR1783453/SRR1783453.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDBT-09A-01D	DNA	EFO	SRS835788	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDBT-09A-01D IL10152 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10152	SRX862364	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDBT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDBT-09A-01D IL10152 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDBT-09A-01D_GAGTGG.bam	SRR1783454	@dbgap@:reads/SRP011999/SRS835788/SRX862364/SRR1783454/SRR1783454.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDBT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDBT-10A-01D	DNA	EFO	SRS835789	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDBT-10A-01D IL10153 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10153	SRX862365	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDBT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDBT-10A-01D IL10153 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDBT-10A-01D_GGTAGC.bam	SRR1783455	@dbgap@:reads/SRP011999/SRS835789/SRX862365/SRR1783455/SRR1783455.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDCJ-09A-01D	DNA	EFO	SRS835797	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDCJ-09A-01D IL10160 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10160	SRX862372	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDCJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDCJ-09A-01D IL10160 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDCJ-09A-01D_CACGAT.bam	SRR1783456	@dbgap@:reads/SRP011999/SRS835797/SRX862372/SRR1783456/SRR1783456.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDCJ-10A-01D	DNA	EFO	SRS835796	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDCJ-10A-01D IL10161 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10161	SRX862373	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDCJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDCJ-10A-01D IL10161 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDCJ-10A-01D_CACTCA.bam	SRR1783457	@dbgap@:reads/SRP011999/SRS835796/SRX862373/SRR1783457/SRR1783457.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDCR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDCR-09A-01D	DNA	EFO	SRS891187	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDCR-09A-01D IL11864 library	PAIRED	GENOMIC	WXS	Hybrid Selection	227	30.1	IL11864	SRX975805	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDCR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDCR-09A-01D IL11864 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDCR-09A-01D_TTAGGC.bam	SRR1949598	@dbgap@:reads/SRP011999/SRS891187/SRX975805/SRR1949598/SRR1949598.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDCR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDCR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDCR-10A-01D	DNA	EFO	SRS891163	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDCR-10A-01D IL11865 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11865	SRX975829	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDCR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDCR-10A-01D IL11865 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDCR-10A-01D_TGACCA.bam	SRR1949599	@dbgap@:reads/SRP011999/SRS891163/SRX975829/SRR1949599/SRR1949599.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDCY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDCY-09A-01D	DNA	EFO	SRS1080861	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARDCY-09A-01D TARGET-10-PARDCY-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	169	69.7985	TARGET-10-PARDCY-09A-01_EXCAP_1	SRX1274409		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARDCY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARDCY-09A-01D TARGET-10-PARDCY-09A-01_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002171_D1-TARGET-10-PARDCY-09A-01.bam	SRR2485560	@dbgap@:reads/SRP011999/SRS1080861/SRX1274409/SRR2485560/SRR2485560.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDCY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDCY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDCY-10A-01D	DNA	EFO	SRS1080862	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARDCY-10A-01D TARGET-10-PARDCY-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	60.3999	TARGET-10-PARDCY-10A-01_EXCAP_1	SRX1274410		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARDCY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARDCY-10A-01D TARGET-10-PARDCY-10A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002171_G1-TARGET-10-PARDCY-10A-01.bam	SRR2485561	@dbgap@:reads/SRP011999/SRS1080862/SRX1274410/SRR2485561/SRR2485561.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDDM-09A-01D	DNA	EFO	SRS891137	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDDM-09A-01D IL11872 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11872	SRX975857	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDDM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDDM-09A-01D IL11872 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDDM-09A-01D_GGCTAC.bam	SRR1949600	@dbgap@:reads/SRP011999/SRS891137/SRX975857/SRR1949600/SRR1949600.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDDM-10A-01D	DNA	EFO	SRS891138	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDDM-10A-01D IL11873 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11873	SRX975856	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDDM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDDM-10A-01D IL11873 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDDM-10A-01D_CTTGTA.bam	SRR1949601	@dbgap@:reads/SRP011999/SRS891138/SRX975856/SRR1949601/SRR1949601.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDDV-09A-01D	DNA	EFO	SRS891129	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDDV-09A-01D IL11880 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11880	SRX975866	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDDV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDDV-09A-01D IL11880 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDDV-09A-01D_GTGAAA.bam	SRR1949602	@dbgap@:reads/SRP011999/SRS891129/SRX975866/SRR1949602/SRR1949602.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDDV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDDV-10A-01D	DNA	EFO	SRS891130	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDDV-10A-01D IL11881 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL11881	SRX975865	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDDV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDDV-10A-01D IL11881 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDDV-10A-01D_GTGGCC.bam	SRR1949603	@dbgap@:reads/SRP011999/SRS891130/SRX975865/SRR1949603/SRR1949603.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDDW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDDW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDDW-09A-01D	DNA	EFO	SRS891139	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDDW-09A-01D IL11888 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11888	SRX975855	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDDW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDDW-09A-01D IL11888 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDDW-09A-01D_ATTCCT.bam	SRR1949604	@dbgap@:reads/SRP011999/SRS891139/SRX975855/SRR1949604/SRR1949604.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDDW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDDW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDDW-10A-01D	DNA	EFO	SRS891144	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDDW-10A-01D IL11889 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11889	SRX975850	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDDW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDDW-10A-01D IL11889 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDDW-10A-01D_CAAAAG.bam	SRR1949605	@dbgap@:reads/SRP011999/SRS891144/SRX975850/SRR1949605/SRR1949605.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDEG-09A-01D	DNA	EFO	SRS1080860	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARDEG-09A-01D TARGET-10-PARDEG-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	85.4809	TARGET-10-PARDEG-09A-01_EXCAP_1	SRX1274411		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARDEG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PARDEG-09A-01D TARGET-10-PARDEG-09A-01_EXCAP_1 run	sequencing assay	EFO	192	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001761_D1-TARGET-10-PARDEG-09A-01.bam	SRR2485562	@dbgap@:reads/SRP011999/SRS1080860/SRX1274411/SRR2485562/SRR2485562.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDEG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDEG-10A-01D	DNA	EFO	SRS1080859	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARDEG-10A-01D TARGET-10-PARDEG-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	64.0102	TARGET-10-PARDEG-10A-01_EXCAP_1	SRX1274412		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARDEG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PARDEG-10A-01D TARGET-10-PARDEG-10A-01_EXCAP_1 run	sequencing assay	EFO	178	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001761_G1-TARGET-10-PARDEG-10A-01.bam	SRR2485563	@dbgap@:reads/SRP011999/SRS1080859/SRX1274412/SRR2485563/SRR2485563.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDEJ-09A-01D	DNA	EFO	SRS880623	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDEJ-09A-01D IL10447 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL10447	SRX896839	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDEJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDEJ-09A-01D IL10447 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDEJ-09A-01D_ATCACG.bam	SRR1825471	@dbgap@:reads/SRP011999/SRS880623/SRX896839/SRR1825471/SRR1825471.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDEJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDEJ-10A-01D	DNA	EFO	SRS880586	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDEJ-10A-01D IL10448 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10448	SRX896877	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDEJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDEJ-10A-01D IL10448 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDEJ-10A-01D_CGATGT.bam	SRR1825472	@dbgap@:reads/SRP011999/SRS880586/SRX896877/SRR1825472/SRR1825472.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDEP-09A-01D	DNA	EFO	SRS1080858	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARDEP-09A-01D TARGET-10-PARDEP-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	73.3662	TARGET-10-PARDEP-09A-01_EXCAP_1	SRX1274413		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARDEP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARDEP-09A-01D TARGET-10-PARDEP-09A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001621_D1-TARGET-10-PARDEP-09A-01.bam	SRR2485564	@dbgap@:reads/SRP011999/SRS1080858/SRX1274413/SRR2485564/SRR2485564.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDEP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDEP-10A-01D	DNA	EFO	SRS1080856	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARDEP-10A-01D TARGET-10-PARDEP-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	164	59.7986	TARGET-10-PARDEP-10A-01_EXCAP_1	SRX1274414		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARDEP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARDEP-10A-01D TARGET-10-PARDEP-10A-01_EXCAP_1 run	sequencing assay	EFO	179	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001621_G1-TARGET-10-PARDEP-10A-01.bam	SRR2485565	@dbgap@:reads/SRP011999/SRS1080856/SRX1274414/SRR2485565/SRR2485565.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDEY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDEY-09A-01D	DNA	EFO	SRS891177	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDEY-09A-01D IL11766 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL11766	SRX975815	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDEY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDEY-09A-01D IL11766 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDEY-09A-01D_ACAGTG.bam	SRR1949606	@dbgap@:reads/SRP011999/SRS891177/SRX975815/SRR1949606/SRR1949606.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDEY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDEY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDEY-10A-01D	DNA	EFO	SRS891218	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDEY-10A-01D IL11767 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL11767	SRX975774	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDEY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDEY-10A-01D IL11767 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDEY-10A-01D_GCCAAT.bam	SRR1949607	@dbgap@:reads/SRP011999/SRS891218/SRX975774/SRR1949607/SRR1949607.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDFB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDFB-09A-01D	DNA	EFO	SRS945072	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDFB-09A-01D IL12234 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL12234	SRX1037924	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDFB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDFB-09A-01D IL12234 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDFB-09A-01D_GTGAAA.bam	SRR2039518	@dbgap@:reads/SRP011999/SRS945072/SRX1037924/SRR2039518/SRR2039518.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDFB-10A-01D	DNA	EFO	SRS880588	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDFB-10A-01D IL10456 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL10456	SRX896875	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDFB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDFB-10A-01D IL10456 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDFB-10A-01D_TAGCTT.bam	SRR1825473	@dbgap@:reads/SRP011999/SRS880588/SRX896875/SRR1825473/SRR1825473.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDFH-09A-01D	DNA	EFO	SRS945100	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDFH-09A-01D IL11774 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11774	SRX1037894	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDFH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDFH-09A-01D IL11774 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDFH-09A-01D_AGTCAA_L001.bam	SRR2039496	@dbgap@:reads/SRP011999/SRS945100/SRX1037894/SRR2039496/SRR2039496.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDFH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDFH-10A-01D	DNA	EFO	SRS945101	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDFH-10A-01D IL11775 library	PAIRED	GENOMIC	WXS	Hybrid Selection	217	29.5	IL11775	SRX1037895	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDFH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDFH-10A-01D IL11775 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDFH-10A-01D_AGTTCC_L001.bam	SRR2039497	@dbgap@:reads/SRP011999/SRS945101/SRX1037895/SRR2039497/SRR2039497.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDFI-09A-01D	DNA	EFO	SRS945099	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDFI-09A-01D IL11782 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11782	SRX1037896	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDFI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDFI-09A-01D IL11782 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDFI-09A-01D_GTTTCG_L003.bam	SRR2039498	@dbgap@:reads/SRP011999/SRS945099/SRX1037896/SRR2039498/SRR2039498.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDFI-10A-01D	DNA	EFO	SRS945098	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDFI-10A-01D IL11783 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11783	SRX1037897	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDFI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDFI-10A-01D IL11783 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDFI-10A-01D_CGTACG_L003.bam	SRR2039499	@dbgap@:reads/SRP011999/SRS945098/SRX1037897/SRR2039499/SRR2039499.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDFN-09A-01D	DNA	EFO	SRS880698	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDFN-09A-01D IL10463 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10463	SRX896765	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDFN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDFN-09A-01D IL10463 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDFN-09A-01D_GTAGAG.bam	SRR1825474	@dbgap@:reads/SRP011999/SRS880698/SRX896765/SRR1825474/SRR1825474.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDFN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDFN-10A-01D	DNA	EFO	SRS880629	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDFN-10A-01D IL10464 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10464	SRX896833	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDFN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDFN-10A-01D IL10464 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDFN-10A-01D_GTCCGC.bam	SRR1825475	@dbgap@:reads/SRP011999/SRS880629/SRX896833/SRR1825475/SRR1825475.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDHK-09A-01D	DNA	EFO	SRS945097	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDHK-09A-01D IL11790 library	PAIRED	GENOMIC	WXS	Hybrid Selection	230	30.3	IL11790	SRX1037898	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDHK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDHK-09A-01D IL11790 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDHK-09A-01D_CAACTA_L004.bam	SRR2039500	@dbgap@:reads/SRP011999/SRS945097/SRX1037898/SRR2039500/SRR2039500.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDHK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDHK-10A-01D	DNA	EFO	SRS945096	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDHK-10A-01D IL11791 library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	29.8	IL11791	SRX1037899	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDHK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDHK-10A-01D IL11791 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDHK-10A-01D_CACCGG_L005.bam	SRR2039501	@dbgap@:reads/SRP011999/SRS945096/SRX1037899/SRR2039501/SRR2039501.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDHW-09A-01D	DNA	EFO	SRS945095	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDHW-09A-01D IL11798 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11798	SRX1037900	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDHW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDHW-09A-01D IL11798 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDHW-09A-01D_CGGAAT_L006.bam	SRR2039502	@dbgap@:reads/SRP011999/SRS945095/SRX1037900/SRR2039502/SRR2039502.sra	2	HG19						
TARGET-10-PARDHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDHW-10A-01D	DNA	EFO	SRS945094	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDHW-10A-01D IL11799 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11799	SRX1037901	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDHW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDHW-10A-01D IL11799 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDHW-10A-01D_CTAGCT_L006.bam	SRR2039503	@dbgap@:reads/SRP011999/SRS945094/SRX1037901/SRR2039503/SRR2039503.sra	2	HG19						
TARGET-10-PARDIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDIN-09A-01D	DNA	EFO	SRS891164	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDIN-09A-01D IL11806 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL11806	SRX975824	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDIN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDIN-09A-01D IL11806 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDIN-09A-01D_TCATTC.bam	SRR1949608	@dbgap@:reads/SRP011999/SRS891164/SRX975824/SRR1949608/SRR1949608.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDIN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDIN-10A-01D	DNA	EFO	SRS891161	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDIN-10A-01D IL11807 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11807	SRX975830	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDIN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDIN-10A-01D IL11807 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDIN-10A-01D_TCCCGA.bam	SRR1949609	@dbgap@:reads/SRP011999/SRS891161/SRX975830/SRR1949609/SRR1949609.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDKG-09A-01D	DNA	EFO	SRS945073	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDKG-09A-01D IL12236 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL12236	SRX1037923	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDKG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDKG-09A-01D IL12236 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDKG-09A-01D_GTTTCG.bam	SRR2039519	@dbgap@:reads/SRP011999/SRS945073/SRX1037923/SRR2039519/SRR2039519.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDKG-10A-01D	DNA	EFO	SRS880573	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDKG-10A-01D IL10472 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL10472	SRX896890	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDKG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDKG-10A-01D IL10472 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDKG-10A-01D_ATGAGC.bam	SRR1825476	@dbgap@:reads/SRP011999/SRS880573/SRX896890/SRR1825476/SRR1825476.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDLJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDLJ-09A-01D	DNA	EFO	SRS880663	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDLJ-09A-01D IL10479 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10479	SRX896799	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDLJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDLJ-09A-01D IL10479 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDLJ-09A-01D_CAGGCG.bam	SRR1825477	@dbgap@:reads/SRP011999/SRS880663/SRX896799/SRR1825477/SRR1825477.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDLJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDLJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDLJ-10A-01D	DNA	EFO	SRS880554	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDLJ-10A-01D IL10480 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL10480	SRX896909	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDLJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDLJ-10A-01D IL10480 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDLJ-10A-01D_CATGGC.bam	SRR1825478	@dbgap@:reads/SRP011999/SRS880554/SRX896909/SRR1825478/SRR1825478.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDLP-09A-01D	DNA	EFO	SRS891147	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDLP-09A-01D IL11814 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL11814	SRX975847	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDLP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDLP-09A-01D IL11814 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDLP-09A-01D_ACAGTG.bam	SRR1949610	@dbgap@:reads/SRP011999/SRS891147/SRX975847/SRR1949610/SRR1949610.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDLP-10A-01D	DNA	EFO	SRS891182	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDLP-10A-01D IL11815 library	PAIRED	GENOMIC	WXS	Hybrid Selection	235	30.7	IL11815	SRX975809	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDLP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDLP-10A-01D IL11815 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDLP-10A-01D_GCCAAT.bam	SRR1949611	@dbgap@:reads/SRP011999/SRS891182/SRX975809/SRR1949611/SRR1949611.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDLR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDLR-09A-01D	DNA	EFO	SRS891162	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDLR-09A-01D IL11822 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11822	SRX975828	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDLR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDLR-09A-01D IL11822 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDLR-09A-01D_AGTCAA.bam	SRR1949612	@dbgap@:reads/SRP011999/SRS891162/SRX975828/SRR1949612/SRR1949612.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDLR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDLR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDLR-14A-01D	DNA	EFO	SRS891190	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDLR-14A-01D IL11823 library	PAIRED	GENOMIC	WXS	Hybrid Selection	220	29.7	IL11823	SRX975801	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDLR-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDLR-14A-01D IL11823 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDLR-14A-01D_AGTTCC.bam	SRR1949613	@dbgap@:reads/SRP011999/SRS891190/SRX975801/SRR1949613/SRR1949613.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDLZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDLZ-09A-01D	DNA	EFO	SRS880621	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDLZ-09A-01D IL10487 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10487	SRX896840	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDLZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDLZ-09A-01D IL10487 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDLZ-09A-01D_GACGAC.bam	SRR1825479	@dbgap@:reads/SRP011999/SRS880621/SRX896840/SRR1825479/SRR1825479.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDLZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDLZ-10A-01D	DNA	EFO	SRS880688	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDLZ-10A-01D IL10488 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL10488	SRX896774	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDLZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDLZ-10A-01D IL10488 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDLZ-10A-01D_TAATCG.bam	SRR1825480	@dbgap@:reads/SRP011999/SRS880688/SRX896774/SRR1825480/SRR1825480.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDMI-09A-01D	DNA	EFO	SRS891175	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDMI-09A-01D IL11866 library	PAIRED	GENOMIC	WXS	Hybrid Selection	228	30.2	IL11866	SRX975817	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDMI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDMI-09A-01D IL11866 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDMI-09A-01D_ACAGTG.bam	SRR1949614	@dbgap@:reads/SRP011999/SRS891175/SRX975817/SRR1949614/SRR1949614.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDMI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDMI-10A-01D	DNA	EFO	SRS891174	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDMI-10A-01D IL11867 library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	29.8	IL11867	SRX975816	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDMI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDMI-10A-01D IL11867 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDMI-10A-01D_GCCAAT.bam	SRR1949615	@dbgap@:reads/SRP011999/SRS891174/SRX975816/SRR1949615/SRR1949615.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDNF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDNF-09A-01D	DNA	EFO	SRS1080855	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARDNF-09A-01D TARGET-10-PARDNF-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	76.339	TARGET-10-PARDNF-09A-01_EXCAP_1	SRX1274415		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARDNF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARDNF-09A-01D TARGET-10-PARDNF-09A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002198_D1-TARGET-10-PARDNF-09A-01.bam	SRR2485566	@dbgap@:reads/SRP011999/SRS1080855/SRX1274415/SRR2485566/SRR2485566.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDNF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDNF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDNF-10A-01D	DNA	EFO	SRS1080857	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARDNF-10A-01D TARGET-10-PARDNF-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	56.2518	TARGET-10-PARDNF-10A-01_EXCAP_1	SRX1274416		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARDNF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARDNF-10A-01D TARGET-10-PARDNF-10A-01_EXCAP_1 run	sequencing assay	EFO	183	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002198_G1-TARGET-10-PARDNF-10A-01.bam	SRR2485567	@dbgap@:reads/SRP011999/SRS1080857/SRX1274416/SRR2485567/SRR2485567.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDRI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDRI-09A-01D	DNA	EFO	SRS891132	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDRI-09A-01D IL11874 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11874	SRX975863	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDRI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDRI-09A-01D IL11874 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDRI-09A-01D_AGTCAA.bam	SRR1949616	@dbgap@:reads/SRP011999/SRS891132/SRX975863/SRR1949616/SRR1949616.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDRI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDRI-10A-01D	DNA	EFO	SRS891141	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDRI-10A-01D IL11875 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL11875	SRX975853	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDRI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDRI-10A-01D IL11875 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDRI-10A-01D_AGTTCC.bam	SRR1949617	@dbgap@:reads/SRP011999/SRS891141/SRX975853/SRR1949617/SRR1949617.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDRS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDRS-09A-01D	DNA	EFO	SRS891126	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDRS-09A-01D IL11882 library	PAIRED	GENOMIC	WXS	Hybrid Selection	219	29.6	IL11882	SRX975868	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDRS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDRS-09A-01D IL11882 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDRS-09A-01D_GTTTCG.bam	SRR1949618	@dbgap@:reads/SRP011999/SRS891126/SRX975868/SRR1949618/SRR1949618.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDRS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDRS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDRS-10A-01D	DNA	EFO	SRS891127	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDRS-10A-01D IL11883 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11883	SRX975869	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDRS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDRS-10A-01D IL11883 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDRS-10A-01D_CGTACG.bam	SRR1949619	@dbgap@:reads/SRP011999/SRS891127/SRX975869/SRR1949619/SRR1949619.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDSN-09A-01D	DNA	EFO	SRS891134	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDSN-09A-01D IL11890 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11890	SRX975859	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDSN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDSN-09A-01D IL11890 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDSN-09A-01D_CAACTA.bam	SRR1949620	@dbgap@:reads/SRP011999/SRS891134/SRX975859/SRR1949620/SRR1949620.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDSN-14A-01D	DNA	EFO	SRS891154	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDSN-14A-01D IL11891 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11891	SRX975838	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDSN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDSN-14A-01D IL11891 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDSN-14A-01D_CACCGG.bam	SRR1949621	@dbgap@:reads/SRP011999/SRS891154/SRX975838/SRR1949621/SRR1949621.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDSP-09A-01D	DNA	EFO	SRS891245	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDSP-09A-01D IL11768 library	PAIRED	GENOMIC	WXS	Hybrid Selection	223	29.9	IL11768	SRX975747	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDSP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDSP-09A-01D IL11768 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDSP-09A-01D_CAGATC.bam	SRR1949622	@dbgap@:reads/SRP011999/SRS891245/SRX975747/SRR1949622/SRR1949622.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDSP-10A-01D	DNA	EFO	SRS945093	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDSP-10A-01D IL11769 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL11769	SRX1037902	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDSP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDSP-10A-01D IL11769 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDSP-10A-01D_ACTTGA.bam	SRR2039504	@dbgap@:reads/SRP011999/SRS945093/SRX1037902/SRR2039504/SRR2039504.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDST-09A-01D	DNA	EFO	SRS880620	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDST-09A-01D IL10495 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10495	SRX896842	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDST-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDST-09A-01D IL10495 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDST-09A-01D_ATCACG.bam	SRR1825481	@dbgap@:reads/SRP011999/SRS880620/SRX896842/SRR1825481/SRR1825481.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDST-10A-01D	DNA	EFO	SRS880526	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDST-10A-01D IL10496 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL10496	SRX896937	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDST-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDST-10A-01D IL10496 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDST-10A-01D_CGATGT.bam	SRR1825482	@dbgap@:reads/SRP011999/SRS880526/SRX896937/SRR1825482/SRR1825482.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDUM-09A-01D	DNA	EFO	SRS880675	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDUM-09A-01D IL10503 library	PAIRED	GENOMIC	WXS	Hybrid Selection	178	26.7	IL10503	SRX896787	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDUM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDUM-09A-01D IL10503 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDUM-09A-01D_GATCAG.bam	SRR1825483	@dbgap@:reads/SRP011999/SRS880675/SRX896787/SRR1825483/SRR1825483.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDUM-10A-01D	DNA	EFO	SRS880486	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDUM-10A-01D IL10504 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10504	SRX896977	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDUM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDUM-10A-01D IL10504 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDUM-10A-01D_TAGCTT.bam	SRR1825484	@dbgap@:reads/SRP011999/SRS880486/SRX896977/SRR1825484/SRR1825484.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDVD-09A-01D	DNA	EFO	SRS880649	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDVD-09A-01D IL10511 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10511	SRX896815	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDVD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDVD-09A-01D IL10511 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDVD-09A-01D_GTAGAG.bam	SRR1825485	@dbgap@:reads/SRP011999/SRS880649/SRX896815/SRR1825485/SRR1825485.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDVD-10A-01D	DNA	EFO	SRS880483	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDVD-10A-01D IL10512 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL10512	SRX896980	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDVD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDVD-10A-01D IL10512 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDVD-10A-01D_GTCCGC.bam	SRR1825486	@dbgap@:reads/SRP011999/SRS880483/SRX896980/SRR1825486/SRR1825486.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDWE-03A-01D IL10519 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL10519	SRX896849	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDWE-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDWE-03A-01D IL10519 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDWE-03A-01D_ACTGAT.bam	SRR1825487	@dbgap@:reads/SRP011999/SRS270565/SRX896849/SRR1825487/SRR1825487.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARDWE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-10A-01D	DNA	EFO	SRS880520	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDWE-10A-01D IL10520 library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	29.3	IL10520	SRX896942	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDWE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDWE-10A-01D IL10520 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDWE-10A-01D_ATGAGC.bam	SRR1825488	@dbgap@:reads/SRP011999/SRS880520/SRX896942/SRR1825488/SRR1825488.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDWM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWM-09A-01D	DNA	EFO	SRS880522	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDWM-09A-01D IL10738 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10738	SRX896941	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDWM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDWM-09A-01D IL10738 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDWM-09A-01D_AGTCAA.bam	SRR1825578	@dbgap@:reads/SRP011999/SRS880522/SRX896941/SRR1825578/SRR1825578.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWM-10A-01D	DNA	EFO	SRS880474	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDWM-10A-01D IL10739 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10739	SRX896988	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDWM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDWM-10A-01D IL10739 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDWM-10A-01D_AGTTCC.bam	SRR1825579	@dbgap@:reads/SRP011999/SRS880474/SRX896988/SRR1825579/SRR1825579.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDXG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDXG-09A-01D	DNA	EFO	SRS880572	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDXG-09A-01D IL10527 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL10527	SRX896891	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDXG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDXG-09A-01D IL10527 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDXG-09A-01D_CAGGCG.bam	SRR1825489	@dbgap@:reads/SRP011999/SRS880572/SRX896891/SRR1825489/SRR1825489.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDXG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDXG-10A-01D	DNA	EFO	SRS880469	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDXG-10A-01D IL10528 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL10528	SRX896993	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDXG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDXG-10A-01D IL10528 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDXG-10A-01D_CATGGC.bam	SRR1825490	@dbgap@:reads/SRP011999/SRS880469/SRX896993/SRR1825490/SRR1825490.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDXI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDXI-03A-01D	DNA	EFO	SRS880545	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDXI-03A-01D IL10535 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL10535	SRX896918	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDXI-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDXI-03A-01D IL10535 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDXI-03A-01D_GACGAC.bam	SRR1825491	@dbgap@:reads/SRP011999/SRS880545/SRX896918/SRR1825491/SRR1825491.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDXI-10A-01D	DNA	EFO	SRS880495	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDXI-10A-01D IL10536 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL10536	SRX896968	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDXI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDXI-10A-01D IL10536 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDXI-10A-01D_TAATCG.bam	SRR1825492	@dbgap@:reads/SRP011999/SRS880495/SRX896968/SRR1825492/SRR1825492.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDXS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDXS-09A-01D	DNA	EFO	SRS880524	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDXS-09A-01D IL10412 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10412	SRX896939	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDXS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDXS-09A-01D IL10412 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDXS-09A-01D_AGTCAA.bam	SRR1825401	@dbgap@:reads/SRP011999/SRS880524/SRX896939/SRR1825401/SRR1825401.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARDXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARDXS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDXS-14A-01D	DNA	EFO	SRS880567	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARDXS-14A-01D IL10413 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL10413	SRX896896	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARDXS-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARDXS-14A-01D IL10413 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARDXS-14A-01D_AGTTCC.bam	SRR1825402	@dbgap@:reads/SRP011999/SRS880567/SRX896896/SRR1825402/SRR1825402.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREAA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREAA-09A-01D	DNA	EFO	SRS880672	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREAA-09A-01D IL10449 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10449	SRX896791	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREAA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREAA-09A-01D IL10449 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREAA-09A-01D_TTAGGC.bam	SRR1825493	@dbgap@:reads/SRP011999/SRS880672/SRX896791/SRR1825493/SRR1825493.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREAA-10A-01D	DNA	EFO	SRS880559	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREAA-10A-01D IL10450 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10450	SRX896904	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREAA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREAA-10A-01D IL10450 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREAA-10A-01D_TGACCA.bam	SRR1825494	@dbgap@:reads/SRP011999/SRS880559/SRX896904/SRR1825494/SRR1825494.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREAL-09A-01D	DNA	EFO	SRS945092	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREAL-09A-01D IL11776 library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	29.3	IL11776	SRX1037903	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREAL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREAL-09A-01D IL11776 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREAL-09A-01D_ATGTCA_L002.bam	SRR2039505	@dbgap@:reads/SRP011999/SRS945092/SRX1037903/SRR2039505/SRR2039505.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREAL-10A-01D	DNA	EFO	SRS945091	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREAL-10A-01D IL11777 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11777	SRX1037904	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREAL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREAL-10A-01D IL11777 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREAL-10A-01D_CCGTCC_L002.bam	SRR2039506	@dbgap@:reads/SRP011999/SRS945091/SRX1037904/SRR2039506/SRR2039506.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREBA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREBA-09A-01D	DNA	EFO	SRS945089	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREBA-09A-01D IL11784 library	PAIRED	GENOMIC	WXS	Hybrid Selection	223	29.9	IL11784	SRX1037905	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREBA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREBA-09A-01D IL11784 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREBA-09A-01D_GAGTGG_L003.bam	SRR2039507	@dbgap@:reads/SRP011999/SRS945089/SRX1037905/SRR2039507/SRR2039507.sra	2	HG19						
TARGET-10-PAREBA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREBA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREBA-10A-01D	DNA	EFO	SRS945090	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREBA-10A-01D IL11785 library	PAIRED	GENOMIC	WXS	Hybrid Selection	231	30.4	IL11785	SRX1037906	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREBA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREBA-10A-01D IL11785 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREBA-10A-01D_GGTAGC_L003.bam	SRR2039508	@dbgap@:reads/SRP011999/SRS945090/SRX1037906/SRR2039508/SRR2039508.sra	2	HG19						
TARGET-10-PAREBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREBH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREBH-09A-01D	DNA	EFO	SRS880664	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREBH-09A-01D IL10457 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10457	SRX896797	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREBH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREBH-09A-01D IL10457 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREBH-09A-01D_GGCTAC.bam	SRR1825495	@dbgap@:reads/SRP011999/SRS880664/SRX896797/SRR1825495/SRR1825495.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREBH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREBH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREBH-10A-01D	DNA	EFO	SRS880676	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREBH-10A-01D IL10458 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL10458	SRX896785	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREBH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREBH-10A-01D IL10458 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREBH-10A-01D_CTTGTA.bam	SRR1825496	@dbgap@:reads/SRP011999/SRS880676/SRX896785/SRR1825496/SRR1825496.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREDS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREDS-03A-01D	DNA	EFO	SRS945088	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREDS-03A-01D IL11792 library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	29.3	IL11792	SRX1037907	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREDS-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREDS-03A-01D IL11792 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREDS-03A-01D_CACGAT_L005.bam	SRR2039509	@dbgap@:reads/SRP011999/SRS945088/SRX1037907/SRR2039509/SRR2039509.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREDS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREDS-10A-01D	DNA	EFO	SRS945086	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREDS-10A-01D IL11793 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11793	SRX1037908	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREDS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREDS-10A-01D IL11793 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREDS-10A-01D_CACTCA_L005.bam	SRR2039510	@dbgap@:reads/SRP011999/SRS945086/SRX1037908/SRR2039510/SRR2039510.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREEE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREEE-09A-01D	DNA	EFO	SRS945087	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREEE-09A-01D IL11800 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11800	SRX1037909	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREEE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREEE-09A-01D IL11800 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREEE-09A-01D_CTATAC_L006.bam	SRR2039511	@dbgap@:reads/SRP011999/SRS945087/SRX1037909/SRR2039511/SRR2039511.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREEE-10A-01D	DNA	EFO	SRS891233	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREEE-10A-01D IL11801 library	PAIRED	GENOMIC	WXS	Hybrid Selection	220	29.7	IL11801	SRX975758	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREEE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREEE-10A-01D IL11801 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREEE-10A-01D_CTCAGA.bam	SRR1949623	@dbgap@:reads/SRP011999/SRS891233/SRX975758/SRR1949623/SRR1949623.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREEX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREEX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREEX-09A-01D	DNA	EFO	SRS891192	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREEX-09A-01D IL11808 library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	29.5	IL11808	SRX975798	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREEX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREEX-09A-01D IL11808 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREEX-09A-01D_TCGAAG.bam	SRR1949624	@dbgap@:reads/SRP011999/SRS891192/SRX975798/SRR1949624/SRR1949624.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREEX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREEX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREEX-10A-01D	DNA	EFO	SRS891261	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREEX-10A-01D IL11809 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11809	SRX975730	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREEX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREEX-10A-01D IL11809 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREEX-10A-01D_TCGGCA.bam	SRR1949625	@dbgap@:reads/SRP011999/SRS891261/SRX975730/SRR1949625/SRR1949625.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREGC-03A-01D	DNA	EFO	SRS880707	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREGC-03A-01D IL10465 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10465	SRX896755	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREGC-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREGC-03A-01D IL10465 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREGC-03A-01D_GTGAAA.bam	SRR1825497	@dbgap@:reads/SRP011999/SRS880707/SRX896755/SRR1825497/SRR1825497.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREGC-10A-01D	DNA	EFO	SRS880677	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREGC-10A-01D IL10466 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10466	SRX896783	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREGC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREGC-10A-01D IL10466 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREGC-10A-01D_GTGGCC.bam	SRR1825498	@dbgap@:reads/SRP011999/SRS880677/SRX896783/SRR1825498/SRR1825498.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREGE-09A-01D	DNA	EFO	SRS891181	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREGE-09A-01D IL11816 library	PAIRED	GENOMIC	WXS	Hybrid Selection	229	30.3	IL11816	SRX975811	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREGE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREGE-09A-01D IL11816 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREGE-09A-01D_CAGATC.bam	SRR1949626	@dbgap@:reads/SRP011999/SRS891181/SRX975811/SRR1949626/SRR1949626.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREGE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREGE-10A-01D	DNA	EFO	SRS891209	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREGE-10A-01D IL11817 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11817	SRX975781	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREGE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREGE-10A-01D IL11817 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREGE-10A-01D_ACTTGA.bam	SRR1949627	@dbgap@:reads/SRP011999/SRS891209/SRX975781/SRR1949627/SRR1949627.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREGZ-09A-01D	DNA	EFO	SRS890992	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREGZ-09A-01D IL11269 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11269	SRX975999	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREGZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREGZ-09A-01D IL11269 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREGZ-09A-01D_GAGTGG.bam	SRR1949459	@dbgap@:reads/SRP011999/SRS890992/SRX975999/SRR1949459/SRR1949459.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREGZ-14A-01D	DNA	EFO	SRS890990	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREGZ-14A-01D IL11270 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL11270	SRX976001	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREGZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREGZ-14A-01D IL11270 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREGZ-14A-01D_GGTAGC.bam	SRR1949460	@dbgap@:reads/SRP011999/SRS890990/SRX976001/SRR1949460/SRR1949460.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREHN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREHN-09A-01D	DNA	EFO	SRS880598	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREHN-09A-01D IL10746 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10746	SRX896865	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREHN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREHN-09A-01D IL10746 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREHN-09A-01D_GTTTCG.bam	SRR1825580	@dbgap@:reads/SRP011999/SRS880598/SRX896865/SRR1825580/SRR1825580.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREHN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREHN-10A-01D	DNA	EFO	SRS880516	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREHN-10A-01D IL10747 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10747	SRX896946	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREHN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREHN-10A-01D IL10747 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREHN-10A-01D_CGTACG.bam	SRR1825581	@dbgap@:reads/SRP011999/SRS880516/SRX896946/SRR1825581/SRR1825581.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREIE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREIE-09A-01D	DNA	EFO	SRS1080854	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAREIE-09A-01D TARGET-10-PAREIE-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	163	61.1672	TARGET-10-PAREIE-09A-01_EXCAP_1	SRX1274417		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAREIE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAREIE-09A-01D TARGET-10-PAREIE-09A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002191_D1-TARGET-10-PAREIE-09A-01.bam	SRR2485568	@dbgap@:reads/SRP011999/SRS1080854/SRX1274417/SRR2485568/SRR2485568.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREIE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREIE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREIE-10A-01D	DNA	EFO	SRS1080853	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAREIE-10A-01D TARGET-10-PAREIE-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	160	59.8193	TARGET-10-PAREIE-10A-01_EXCAP_1	SRX1274418		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAREIE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAREIE-10A-01D TARGET-10-PAREIE-10A-01_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002191_G1-TARGET-10-PAREIE-10A-01.bam	SRR2485569	@dbgap@:reads/SRP011999/SRS1080853/SRX1274418/SRR2485569/SRR2485569.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREIN-09A-01D	DNA	EFO	SRS891202	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREIN-09A-01D IL11824 library	PAIRED	GENOMIC	WXS	Hybrid Selection	220	29.7	IL11824	SRX975786	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREIN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREIN-09A-01D IL11824 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREIN-09A-01D_ATGTCA.bam	SRR1949628	@dbgap@:reads/SRP011999/SRS891202/SRX975786/SRR1949628/SRR1949628.sra	2	HG19						
TARGET-10-PAREIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREIV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREIV-09A-01D	DNA	EFO	SRS891171	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREIV-09A-01D IL11868 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11868	SRX975821	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREIV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREIV-09A-01D IL11868 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREIV-09A-01D_CAGATC.bam	SRR1949629	@dbgap@:reads/SRP011999/SRS891171/SRX975821/SRR1949629/SRR1949629.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREIV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREIV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREIV-10A-01D	DNA	EFO	SRS891188	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREIV-10A-01D IL11869 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11869	SRX975803	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREIV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREIV-10A-01D IL11869 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREIV-10A-01D_ACTTGA.bam	SRR1949630	@dbgap@:reads/SRP011999/SRS891188/SRX975803/SRR1949630/SRR1949630.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREJA-09A-01D	DNA	EFO	SRS891151	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREJA-09A-01D IL11876 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11876	SRX975841	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREJA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREJA-09A-01D IL11876 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREJA-09A-01D_ATGTCA.bam	SRR1949631	@dbgap@:reads/SRP011999/SRS891151/SRX975841/SRR1949631/SRR1949631.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREJA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREJA-10A-01D	DNA	EFO	SRS891194	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREJA-10A-01D IL11877 library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	29.5	IL11877	SRX975796	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREJA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREJA-10A-01D IL11877 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREJA-10A-01D_CCGTCC.bam	SRR1949632	@dbgap@:reads/SRP011999/SRS891194/SRX975796/SRR1949632/SRR1949632.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREJZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREJZ-09A-01D	DNA	EFO	SRS880593	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREJZ-09A-01D IL10473 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10473	SRX896870	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREJZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREJZ-09A-01D IL10473 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREJZ-09A-01D_ATTCCT.bam	SRR1825499	@dbgap@:reads/SRP011999/SRS880593/SRX896870/SRR1825499/SRR1825499.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREJZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREJZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREJZ-10A-01D	DNA	EFO	SRS880706	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREJZ-10A-01D IL10474 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10474	SRX896757	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREJZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREJZ-10A-01D IL10474 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREJZ-10A-01D_CAAAAG.bam	SRR1825500	@dbgap@:reads/SRP011999/SRS880706/SRX896757/SRR1825500/SRR1825500.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREKG-09A-01D	DNA	EFO	SRS880603	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREKG-09A-01D IL10481 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10481	SRX896859	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREKG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREKG-09A-01D IL10481 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREKG-09A-01D_CATTTT.bam	SRR1825501	@dbgap@:reads/SRP011999/SRS880603/SRX896859/SRR1825501/SRR1825501.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREKG-10A-01D	DNA	EFO	SRS880632	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREKG-10A-01D IL10482 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL10482	SRX896830	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREKG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREKG-10A-01D IL10482 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREKG-10A-01D_CCAACA.bam	SRR1825502	@dbgap@:reads/SRP011999/SRS880632/SRX896830/SRR1825502/SRR1825502.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREKH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREKH-09A-01D	DNA	EFO	SRS891142	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREKH-09A-01D IL11884 library	PAIRED	GENOMIC	WXS	Hybrid Selection	220	29.7	IL11884	SRX975852	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREKH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREKH-09A-01D IL11884 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREKH-09A-01D_GAGTGG.bam	SRR1949633	@dbgap@:reads/SRP011999/SRS891142/SRX975852/SRR1949633/SRR1949633.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREKH-10A-01D	DNA	EFO	SRS891242	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREKH-10A-01D IL11885 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11885	SRX975832	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREKH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREKH-10A-01D IL11885 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREKH-10A-01D_GGTAGC.bam	SRR1949634	@dbgap@:reads/SRP011999/SRS891242/SRX975832/SRR1949634/SRR1949634.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREKM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREKM-09A-01D	DNA	EFO	SRS891167	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREKM-09A-01D IL11892 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11892	SRX975826	P13_B39	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREKM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREKM-09A-01D IL11892 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREKM-09A-01D_CACGAT.bam	SRR1949635	@dbgap@:reads/SRP011999/SRS891167/SRX975826/SRR1949635/SRR1949635.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREKM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREKM-10A-01D	DNA	EFO	SRS891216	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREKM-10A-01D IL11598 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL11598	SRX975776	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREKM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREKM-10A-01D IL11598 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREKM-10A-01D_CAACTA.bam	SRR1949636	@dbgap@:reads/SRP011999/SRS891216/SRX975776/SRR1949636/SRR1949636.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARENT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARENT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARENT-09A-01D	DNA	EFO	SRS891110	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARENT-09A-01D IL11459 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL11459	SRX975885	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARENT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARENT-09A-01D IL11459 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARENT-09A-01D_ATCACG.bam	SRR1949473	@dbgap@:reads/SRP011999/SRS891110/SRX975885/SRR1949473/SRR1949473.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARENT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARENT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARENT-10A-01D	DNA	EFO	SRS890930	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARENT-10A-01D IL11460 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL11460	SRX975897	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARENT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARENT-10A-01D IL11460 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARENT-10A-01D_CGATGT.bam	SRR1949474	@dbgap@:reads/SRP011999/SRS890930/SRX975897/SRR1949474/SRR1949474.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARENU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARENU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARENU-09A-01D	DNA	EFO	SRS891096	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARENU-09A-01D IL11467 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11467	SRX975900	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARENU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARENU-09A-01D IL11467 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARENU-09A-01D_GATCAG.bam	SRR1949543	@dbgap@:reads/SRP011999/SRS891096/SRX975900/SRR1949543/SRR1949543.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARENU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARENU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARENU-10A-01D	DNA	EFO	SRS891097	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARENU-10A-01D IL11468 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL11468	SRX975899	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARENU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARENU-10A-01D IL11468 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARENU-10A-01D_TAGCTT.bam	SRR1949544	@dbgap@:reads/SRP011999/SRS891097/SRX975899/SRR1949544/SRR1949544.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARENW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARENW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARENW-09A-01D	DNA	EFO	SRS1080852	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARENW-09A-01D TARGET-10-PARENW-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	66.8573	TARGET-10-PARENW-09A-01_EXCAP_1	SRX1274419		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARENW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARENW-09A-01D TARGET-10-PARENW-09A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002203_D1-TARGET-10-PARENW-09A-01.bam	SRR2485570	@dbgap@:reads/SRP011999/SRS1080852/SRX1274419/SRR2485570/SRR2485570.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARENW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARENW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARENW-10A-01D	DNA	EFO	SRS1080851	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARENW-10A-01D TARGET-10-PARENW-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	58.4276	TARGET-10-PARENW-10A-01_EXCAP_1	SRX1274420		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARENW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARENW-10A-01D TARGET-10-PARENW-10A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002203_G1-TARGET-10-PARENW-10A-01.bam	SRR2485571	@dbgap@:reads/SRP011999/SRS1080851/SRX1274420/SRR2485571/SRR2485571.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREPB-09A-01D	DNA	EFO	SRS891086	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREPB-09A-01D IL11475 library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	29.5	IL11475	SRX975910	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREPB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREPB-09A-01D IL11475 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREPB-09A-01D_GTAGAG.bam	SRR1949545	@dbgap@:reads/SRP011999/SRS891086/SRX975910/SRR1949545/SRR1949545.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREPB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREPB-10A-01D	DNA	EFO	SRS891046	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREPB-10A-01D IL11476 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11476	SRX975948	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREPB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREPB-10A-01D IL11476 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREPB-10A-01D_GTCCGC.bam	SRR1949546	@dbgap@:reads/SRP011999/SRS891046/SRX975948/SRR1949546/SRR1949546.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREPF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREPF-09A-01D	DNA	EFO	SRS891081	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREPF-09A-01D IL11483 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11483	SRX975915	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREPF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREPF-09A-01D IL11483 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREPF-09A-01D_ACTGAT.bam	SRR1949475	@dbgap@:reads/SRP011999/SRS891081/SRX975915/SRR1949475/SRR1949475.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREPF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREPF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREPF-10A-01D	DNA	EFO	SRS891054	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREPF-10A-01D IL11484 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11484	SRX975940	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREPF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREPF-10A-01D IL11484 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREPF-10A-01D_ATGAGC.bam	SRR1949476	@dbgap@:reads/SRP011999/SRS891054/SRX975940/SRR1949476/SRR1949476.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARERM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARERM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARERM-09A-01D	DNA	EFO	SRS880610	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARERM-09A-01D IL10489 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL10489	SRX896853	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARERM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARERM-09A-01D IL10489 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARERM-09A-01D_TACAGC.bam	SRR1825503	@dbgap@:reads/SRP011999/SRS880610/SRX896853/SRR1825503/SRR1825503.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARERM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARERM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARERM-10A-01D	DNA	EFO	SRS880703	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARERM-10A-01D IL10490 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10490	SRX896759	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARERM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARERM-10A-01D IL10490 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARERM-10A-01D_TATAAT.bam	SRR1825504	@dbgap@:reads/SRP011999/SRS880703/SRX896759/SRR1825504/SRR1825504.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARERS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARERS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARERS-09A-01D	DNA	EFO	SRS891102	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARERS-09A-01D IL11491 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11491	SRX975893	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARERS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARERS-09A-01D IL11491 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARERS-09A-01D_CAGGCG.bam	SRR1949477	@dbgap@:reads/SRP011999/SRS891102/SRX975893/SRR1949477/SRR1949477.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARERS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARERS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARERS-10A-01D	DNA	EFO	SRS891085	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARERS-10A-01D IL11492 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11492	SRX975909	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARERS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARERS-10A-01D IL11492 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARERS-10A-01D_CATGGC.bam	SRR1949478	@dbgap@:reads/SRP011999/SRS891085/SRX975909/SRR1949478/SRR1949478.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARESP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARESP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARESP-09A-01D	DNA	EFO	SRS880517	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARESP-09A-01D IL10497 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10497	SRX896947	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARESP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARESP-09A-01D IL10497 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARESP-09A-01D_TTAGGC.bam	SRR1825505	@dbgap@:reads/SRP011999/SRS880517/SRX896947/SRR1825505/SRR1825505.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARESP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARESP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARESP-10A-01D	DNA	EFO	SRS880509	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARESP-10A-01D IL10498 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10498	SRX896953	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARESP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARESP-10A-01D IL10498 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARESP-10A-01D_TGACCA.bam	SRR1825506	@dbgap@:reads/SRP011999/SRS880509/SRX896953/SRR1825506/SRR1825506.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREST-09A-01D	DNA	EFO	SRS891083	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREST-09A-01D IL11499 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11499	SRX975912	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREST-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREST-09A-01D IL11499 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREST-09A-01D_GACGAC.bam	SRR1949479	@dbgap@:reads/SRP011999/SRS891083/SRX975912/SRR1949479/SRR1949479.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREST-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREST-10A-01D	DNA	EFO	SRS891043	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREST-10A-01D IL11500 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11500	SRX975951	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREST-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREST-10A-01D IL11500 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREST-10A-01D_TAATCG.bam	SRR1949480	@dbgap@:reads/SRP011999/SRS891043/SRX975951/SRR1949480/SRR1949480.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARETC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARETC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARETC-09A-01D	DNA	EFO	SRS891053	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARETC-09A-01D IL11507 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11507	SRX975942	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARETC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARETC-09A-01D IL11507 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARETC-09A-01D_ATCACG.bam	SRR1949547	@dbgap@:reads/SRP011999/SRS891053/SRX975942/SRR1949547/SRR1949547.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARETC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARETC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARETC-10A-01D	DNA	EFO	SRS891035	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARETC-10A-01D IL11508 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11508	SRX975960	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARETC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARETC-10A-01D IL11508 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARETC-10A-01D_CGATGT.bam	SRR1949548	@dbgap@:reads/SRP011999/SRS891035/SRX975960/SRR1949548/SRR1949548.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARETH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARETH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARETH-09A-01D	DNA	EFO	SRS880476	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARETH-09A-01D IL10505 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10505	SRX896987	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARETH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARETH-09A-01D IL10505 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARETH-09A-01D_GGCTAC.bam	SRR1825507	@dbgap@:reads/SRP011999/SRS880476/SRX896987/SRR1825507/SRR1825507.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARETH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARETH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARETH-10A-01D	DNA	EFO	SRS880466	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARETH-10A-01D IL10506 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10506	SRX896997	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARETH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARETH-10A-01D IL10506 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARETH-10A-01D_CTTGTA.bam	SRR1825508	@dbgap@:reads/SRP011999/SRS880466/SRX896997/SRR1825508/SRR1825508.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARETV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARETV-09A-01D	DNA	EFO	SRS891067	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARETV-09A-01D IL11515 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11515	SRX975928	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARETV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARETV-09A-01D IL11515 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARETV-09A-01D_GATCAG.bam	SRR1949549	@dbgap@:reads/SRP011999/SRS891067/SRX975928/SRR1949549/SRR1949549.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARETV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARETV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARETV-10A-01D	DNA	EFO	SRS891038	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARETV-10A-01D IL11516 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11516	SRX975956	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARETV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARETV-10A-01D IL11516 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARETV-10A-01D_TAGCTT.bam	SRR1949550	@dbgap@:reads/SRP011999/SRS891038/SRX975956/SRR1949550/SRR1949550.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREUH-09A-01D	DNA	EFO	SRS891103	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREUH-09A-01D IL11523 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11523	SRX975892	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREUH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREUH-09A-01D IL11523 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREUH-09A-01D_GTAGAG.bam	SRR1949481	@dbgap@:reads/SRP011999/SRS891103/SRX975892/SRR1949481/SRR1949481.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREUH-10A-01D	DNA	EFO	SRS891099	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREUH-10A-01D IL11524 library	PAIRED	GENOMIC	WXS	Hybrid Selection	219	29.6	IL11524	SRX975896	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREUH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREUH-10A-01D IL11524 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREUH-10A-01D_GTCCGC.bam	SRR1949482	@dbgap@:reads/SRP011999/SRS891099/SRX975896/SRR1949482/SRR1949482.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREWE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREWE-09A-01D	DNA	EFO	SRS1080850	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAREWE-09A-01D TARGET-10-PAREWE-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	164	65.8527	TARGET-10-PAREWE-09A-01_EXCAP_1	SRX1274421		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAREWE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAREWE-09A-01D TARGET-10-PAREWE-09A-01_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002173_D1-TARGET-10-PAREWE-09A-01.bam	SRR2485572	@dbgap@:reads/SRP011999/SRS1080850/SRX1274421/SRR2485572/SRR2485572.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREWE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREWE-10A-01D	DNA	EFO	SRS1080849	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAREWE-10A-01D TARGET-10-PAREWE-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	164	66.4259	TARGET-10-PAREWE-10A-01_EXCAP_1	SRX1274422		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAREWE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAREWE-10A-01D TARGET-10-PAREWE-10A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002173_G1-TARGET-10-PAREWE-10A-01.bam	SRR2485573	@dbgap@:reads/SRP011999/SRS1080849/SRX1274422/SRR2485573/SRR2485573.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREWM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREWM-09A-01D	DNA	EFO	SRS891072	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREWM-09A-01D IL11531 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11531	SRX975923	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREWM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREWM-09A-01D IL11531 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREWM-09A-01D_ACTGAT.bam	SRR1949483	@dbgap@:reads/SRP011999/SRS891072/SRX975923/SRR1949483/SRR1949483.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREWM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREWM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREWM-10A-01D	DNA	EFO	SRS891065	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREWM-10A-01D IL11532 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL11532	SRX975931	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREWM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREWM-10A-01D IL11532 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREWM-10A-01D_ATGAGC.bam	SRR1949484	@dbgap@:reads/SRP011999/SRS891065/SRX975931/SRR1949484/SRR1949484.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREWZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREWZ-09A-01D	DNA	EFO	SRS1080848	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAREWZ-09A-01D TARGET-10-PAREWZ-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	79.3075	TARGET-10-PAREWZ-09A-01_EXCAP_1	SRX1274423		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAREWZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAREWZ-09A-01D TARGET-10-PAREWZ-09A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002177_D1-TARGET-10-PAREWZ-09A-01.bam	SRR2485574	@dbgap@:reads/SRP011999/SRS1080848/SRX1274423/SRR2485574/SRR2485574.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREWZ-10A-01D	DNA	EFO	SRS1080847	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAREWZ-10A-01D TARGET-10-PAREWZ-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	61.1053	TARGET-10-PAREWZ-10A-01_EXCAP_1	SRX1274424		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAREWZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAREWZ-10A-01D TARGET-10-PAREWZ-10A-01_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002177_G1-TARGET-10-PAREWZ-10A-01.bam	SRR2485575	@dbgap@:reads/SRP011999/SRS1080847/SRX1274424/SRR2485575/SRR2485575.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREYJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREYJ-09A-01D	DNA	EFO	SRS891057	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREYJ-09A-01D IL11539 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11539	SRX975937	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREYJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREYJ-09A-01D IL11539 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREYJ-09A-01D_CAGGCG.bam	SRR1949485	@dbgap@:reads/SRP011999/SRS891057/SRX975937/SRR1949485/SRR1949485.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREYJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREYJ-10A-01D	DNA	EFO	SRS891032	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREYJ-10A-01D IL11540 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11540	SRX975963	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREYJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREYJ-10A-01D IL11540 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREYJ-10A-01D_CATGGC.bam	SRR1949486	@dbgap@:reads/SRP011999/SRS891032/SRX975963/SRR1949486/SRR1949486.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREYW-09A-01D	DNA	EFO	SRS880519	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREYW-09A-01D IL10513 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL10513	SRX896944	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREYW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREYW-09A-01D IL10513 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREYW-09A-01D_GTGAAA.bam	SRR1825509	@dbgap@:reads/SRP011999/SRS880519/SRX896944/SRR1825509/SRR1825509.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREYW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREYW-14A-01D	DNA	EFO	SRS880471	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAREYW-14A-01D IL10514 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL10514	SRX896990	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAREYW-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAREYW-14A-01D IL10514 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAREYW-14A-01D_GTGGCC.bam	SRR1825510	@dbgap@:reads/SRP011999/SRS880471/SRX896990/SRR1825510/SRR1825510.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREZM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREZM-09A-01D	DNA	EFO	SRS1080845	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAREZM-09A-01D TARGET-10-PAREZM-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	154	54.8214	TARGET-10-PAREZM-09A-01_EXCAP_1	SRX1274425		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAREZM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAREZM-09A-01D TARGET-10-PAREZM-09A-01_EXCAP_1 run	sequencing assay	EFO	164	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002184_D1-TARGET-10-PAREZM-09A-01.bam	SRR2485576	@dbgap@:reads/SRP011999/SRS1080845/SRX1274425/SRR2485576/SRR2485576.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAREZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAREZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAREZM-10A-01D	DNA	EFO	SRS1080846	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAREZM-10A-01D TARGET-10-PAREZM-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	61.3939	TARGET-10-PAREZM-10A-01_EXCAP_1	SRX1274426		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAREZM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAREZM-10A-01D TARGET-10-PAREZM-10A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002184_G1-TARGET-10-PAREZM-10A-01.bam	SRR2485577	@dbgap@:reads/SRP011999/SRS1080846/SRX1274426/SRR2485577/SRR2485577.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFAP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFAP-09A-01D	DNA	EFO	SRS891082	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFAP-09A-01D IL11547 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11547	SRX975916	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFAP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFAP-09A-01D IL11547 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFAP-09A-01D_GACGAC.bam	SRR1949551	@dbgap@:reads/SRP011999/SRS891082/SRX975916/SRR1949551/SRR1949551.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFAP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFAP-14A-01D	DNA	EFO	SRS891055	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFAP-14A-01D IL11548 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11548	SRX975938	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFAP-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFAP-14A-01D IL11548 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFAP-14A-01D_TAATCG.bam	SRR1949552	@dbgap@:reads/SRP011999/SRS891055/SRX975938/SRR1949552/SRR1949552.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFDB-09A-01D	DNA	EFO	SRS880492	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFDB-09A-01D IL10521 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL10521	SRX896971	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFDB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFDB-09A-01D IL10521 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFDB-09A-01D_ATTCCT.bam	SRR1825511	@dbgap@:reads/SRP011999/SRS880492/SRX896971/SRR1825511/SRR1825511.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFDB-10A-01D	DNA	EFO	SRS880485	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFDB-10A-01D IL10522 library	PAIRED	GENOMIC	WXS	Hybrid Selection	217	29.5	IL10522	SRX896978	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFDB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFDB-10A-01D IL10522 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFDB-10A-01D_CAAAAG.bam	SRR1825512	@dbgap@:reads/SRP011999/SRS880485/SRX896978/SRR1825512/SRR1825512.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFDG-09A-01D	DNA	EFO	SRS891091	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFDG-09A-01D IL11461 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL11461	SRX975903	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFDG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFDG-09A-01D IL11461 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFDG-09A-01D_TTAGGC.bam	SRR1949553	@dbgap@:reads/SRP011999/SRS891091/SRX975903/SRR1949553/SRR1949553.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFDG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFDG-10A-01D	DNA	EFO	SRS891087	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFDG-10A-01D IL11462 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11462	SRX975908	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFDG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFDG-10A-01D IL11462 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFDG-10A-01D_TGACCA.bam	SRR1949554	@dbgap@:reads/SRP011999/SRS891087/SRX975908/SRR1949554/SRR1949554.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFDL-09A-01D	DNA	EFO	SRS1080844	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARFDL-09A-01D SJTALL002007_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	56.0134	SJTALL002007_D1_EXCAP_1	SRX1274427		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARFDL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARFDL-09A-01D SJTALL002007_D1_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002007_D1-TARGET-10-PARFDL-09A-01.bam	SRR2485578	@dbgap@:reads/SRP011999/SRS1080844/SRX1274427/SRR2485578/SRR2485578.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFDL-10A-01D	DNA	EFO	SRS1080843	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARFDL-10A-01D SJTALL002007_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	152	50.023	SJTALL002007_G1_EXCAP_1	SRX1274428		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARFDL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARFDL-10A-01D SJTALL002007_G1_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002007_G1-TARGET-10-PARFDL-10A-01.bam	SRR2485579	@dbgap@:reads/SRP011999/SRS1080843/SRX1274428/SRR2485579/SRR2485579.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFDW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFDW-09A-01D	DNA	EFO	SRS891066	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFDW-09A-01D IL11469 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11469	SRX975929	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFDW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFDW-09A-01D IL11469 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFDW-09A-01D_GGCTAC.bam	SRR1949555	@dbgap@:reads/SRP011999/SRS891066/SRX975929/SRR1949555/SRR1949555.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFDW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFDW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFDW-14A-01D	DNA	EFO	SRS891064	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFDW-14A-01D IL11470 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11470	SRX975930	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFDW-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFDW-14A-01D IL11470 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFDW-14A-01D_CTTGTA.bam	SRR1949556	@dbgap@:reads/SRP011999/SRS891064/SRX975930/SRR1949556/SRR1949556.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFEH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFEH-09A-01D	DNA	EFO	SRS880461	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFEH-09A-01D IL10529 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL10529	SRX897000	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFEH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFEH-09A-01D IL10529 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFEH-09A-01D_CATTTT.bam	SRR1825513	@dbgap@:reads/SRP011999/SRS880461/SRX897000/SRR1825513/SRR1825513.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFEH-10A-01D	DNA	EFO	SRS880460	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFEH-10A-01D IL10530 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL10530	SRX897002	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFEH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFEH-10A-01D IL10530 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFEH-10A-01D_CCAACA.bam	SRR1825514	@dbgap@:reads/SRP011999/SRS880460/SRX897002/SRR1825514/SRR1825514.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFFC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFFC-03A-01D	DNA	EFO	SRS891047	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFFC-03A-01D IL11477 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11477	SRX975947	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFFC-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFFC-03A-01D IL11477 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFFC-03A-01D_GTGAAA.bam	SRR1949557	@dbgap@:reads/SRP011999/SRS891047/SRX975947/SRR1949557/SRR1949557.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFFC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFFC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFFC-14A-01D	DNA	EFO	SRS891042	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFFC-14A-01D IL11478 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11478	SRX975953	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFFC-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFFC-14A-01D IL11478 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFFC-14A-01D_GTGGCC.bam	SRR1949558	@dbgap@:reads/SRP011999/SRS891042/SRX975953/SRR1949558/SRR1949558.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFHH-09A-01D	DNA	EFO	SRS891052	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFHH-09A-01D IL11485 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11485	SRX975943	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFHH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFHH-09A-01D IL11485 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFHH-09A-01D_ATTCCT.bam	SRR1949559	@dbgap@:reads/SRP011999/SRS891052/SRX975943/SRR1949559/SRR1949559.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFHH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFHH-14A-01D	DNA	EFO	SRS891058	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFHH-14A-01D IL11486 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11486	SRX975934	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFHH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFHH-14A-01D IL11486 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFHH-14A-01D_CAAAAG.bam	SRR1949560	@dbgap@:reads/SRP011999/SRS891058/SRX975934/SRR1949560/SRR1949560.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFIH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFIH-09A-01D	DNA	EFO	SRS835610	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFIH-09A-01D IL9080 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9080	SRX849224	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFIH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFIH-09A-01D IL9080 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFIH-09A-01D_TAGCTT.bam	SRR1767935	@dbgap@:reads/SRP011999/SRS835610/SRX849224/SRR1767935/SRR1767935.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFIH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFIH-14A-01D	DNA	EFO	SRS835608	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFIH-14A-01D IL9081 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL9081	SRX849225	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFIH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFIH-14A-01D IL9081 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFIH-14A-01D_GGCTAC.bam	SRR1767936	@dbgap@:reads/SRP011999/SRS835608/SRX849225/SRR1767936/SRR1767936.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFIZ-09A-01D	DNA	EFO	SRS891088	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFIZ-09A-01D IL11493 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11493	SRX975907	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFIZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFIZ-09A-01D IL11493 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFIZ-09A-01D_CATTTT.bam	SRR1949561	@dbgap@:reads/SRP011999/SRS891088/SRX975907/SRR1949561/SRR1949561.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFIZ-10A-01D	DNA	EFO	SRS891068	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFIZ-10A-01D IL11494 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11494	SRX975927	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFIZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFIZ-10A-01D IL11494 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFIZ-10A-01D_CCAACA.bam	SRR1949562	@dbgap@:reads/SRP011999/SRS891068/SRX975927/SRR1949562/SRR1949562.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFJK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFJK-09A-01D	DNA	EFO	SRS891050	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFJK-09A-01D IL11501 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11501	SRX975944	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFJK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFJK-09A-01D IL11501 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFJK-09A-01D_TACAGC.bam	SRR1949563	@dbgap@:reads/SRP011999/SRS891050/SRX975944/SRR1949563/SRR1949563.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFJK-10A-01D	DNA	EFO	SRS890932	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFJK-10A-01D IL11502 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11502	SRX975952	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFJK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFJK-10A-01D IL11502 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFJK-10A-01D_TATAAT.bam	SRR1949564	@dbgap@:reads/SRP011999/SRS890932/SRX975952/SRR1949564/SRR1949564.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFJM-09A-01D	DNA	EFO	SRS891033	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFJM-09A-01D IL11509 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL11509	SRX975962	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFJM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFJM-09A-01D IL11509 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFJM-09A-01D_TTAGGC.bam	SRR1949565	@dbgap@:reads/SRP011999/SRS891033/SRX975962/SRR1949565/SRR1949565.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFJM-10A-01D	DNA	EFO	SRS891044	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFJM-10A-01D IL11510 library	PAIRED	GENOMIC	WXS	Hybrid Selection	220	29.7	IL11510	SRX975949	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFJM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFJM-10A-01D IL11510 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFJM-10A-01D_TGACCA.bam	SRR1949566	@dbgap@:reads/SRP011999/SRS891044/SRX975949/SRR1949566/SRR1949566.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFKD-09A-01D	DNA	EFO	SRS1080842	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARFKD-09A-01D TARGET-10-PARFKD-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	74.2622	TARGET-10-PARFKD-09A-01_EXCAP_1	SRX1274429		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARFKD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARFKD-09A-01D TARGET-10-PARFKD-09A-01_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002196_D1-TARGET-10-PARFKD-09A-01.bam	SRR2485580	@dbgap@:reads/SRP011999/SRS1080842/SRX1274429/SRR2485580/SRR2485580.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFKD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFKD-10A-01D	DNA	EFO	SRS1080840	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARFKD-10A-01D TARGET-10-PARFKD-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	63.0979	TARGET-10-PARFKD-10A-01_EXCAP_1	SRX1274430		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARFKD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARFKD-10A-01D TARGET-10-PARFKD-10A-01_EXCAP_1 run	sequencing assay	EFO	179	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002196_G1-TARGET-10-PARFKD-10A-01.bam	SRR2485581	@dbgap@:reads/SRP011999/SRS1080840/SRX1274430/SRR2485581/SRR2485581.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFPJ-09A-01D	DNA	EFO	SRS835606	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFPJ-09A-01D IL9088 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9088	SRX849226	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFPJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFPJ-09A-01D IL9088 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFPJ-09A-01D_GTCCGC.bam	SRR1767937	@dbgap@:reads/SRP011999/SRS835606/SRX849226/SRR1767937/SRR1767937.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFPJ-14A-01D	DNA	EFO	SRS835607	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFPJ-14A-01D IL9089 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9089	SRX849227	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFPJ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFPJ-14A-01D IL9089 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFPJ-14A-01D_GTGAAA.bam	SRR1767938	@dbgap@:reads/SRP011999/SRS835607/SRX849227/SRR1767938/SRR1767938.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFSF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFSF-09A-01D	DNA	EFO	SRS1080841	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARFSF-09A-01D TARGET-10-PARFSF-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	74.2298	TARGET-10-PARFSF-09A-01_EXCAP_1	SRX1274431		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARFSF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARFSF-09A-01D TARGET-10-PARFSF-09A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002200_D1-TARGET-10-PARFSF-09A-01.bam	SRR2485582	@dbgap@:reads/SRP011999/SRS1080841/SRX1274431/SRR2485582/SRR2485582.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFSF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFSF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFSF-14A-01D	DNA	EFO	SRS1080839	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARFSF-14A-01D TARGET-10-PARFSF-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	89.6448	TARGET-10-PARFSF-14A-01_EXCAP_1	SRX1274432		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARFSF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARFSF-14A-01D TARGET-10-PARFSF-14A-01_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002200_G1-TARGET-10-PARFSF-14A-01.bam	SRR2485583	@dbgap@:reads/SRP011999/SRS1080839/SRX1274432/SRR2485583/SRR2485583.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-03A-01D	DNA	EFO	SRS160236	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-03A-01D ING_ALLSRG.PARFTR03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR03A-1_1pA	SRX090596		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-03A-01D ING_ALLSRG.PARFTR03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_5.bam	SRR564871	@dbgap@:reads/SRP011999/SRS160236/SRX090596/SRR564871/SRR564871.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-03A-01D	DNA	EFO	SRS160236	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-03A-01D ING_ALLSRG.PARFTR03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR03A-1_1pA	SRX090596		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-03A-01D ING_ALLSRG.PARFTR03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_5.bam	SRR564871	@dbgap@:reads/SRP011999/SRS160236/SRX090596/SRR564871/SRR564871.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-03A-01D	DNA	EFO	SRS160236	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-03A-01D ING_ALLSRG.PARFTR03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR03A-1_1pA	SRX090596		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-03A-01D ING_ALLSRG.PARFTR03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_5.bam	SRR564871	@dbgap@:reads/SRP011999/SRS160236/SRX090596/SRR564871/SRR564871.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-03A-01D	DNA	EFO	SRS160236	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-03A-01D ING_ALLSRG.PARFTR03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR03A-1_1pA	SRX090596		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-03A-01D ING_ALLSRG.PARFTR03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_5.bam	SRR564871	@dbgap@:reads/SRP011999/SRS160236/SRX090596/SRR564871/SRR564871.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-04A-01D ING_ALLSRG.PARFTR04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR04A-1_1pA	SRX089166		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-04A-01D ING_ALLSRG.PARFTR04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_3.bam	SRR563668	@dbgap@:reads/SRP011999/SRS160237/SRX089166/SRR563668/SRR563668.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-04A-01D ING_ALLSRG.PARFTR04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR04A-1_1pA	SRX089166		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-04A-01D ING_ALLSRG.PARFTR04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_3.bam	SRR563668	@dbgap@:reads/SRP011999/SRS160237/SRX089166/SRR563668/SRR563668.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-04A-01D ING_ALLSRG.PARFTR04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR04A-1_1pA	SRX089166		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-04A-01D ING_ALLSRG.PARFTR04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_3.bam	SRR563668	@dbgap@:reads/SRP011999/SRS160237/SRX089166/SRR563668/SRR563668.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-04A-01D ING_ALLSRG.PARFTR04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR04A-1_1pA	SRX089166		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-04A-01D ING_ALLSRG.PARFTR04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110107_SN601_0070_A818TJABXX1_3.bam	SRR563668	@dbgap@:reads/SRP011999/SRS160237/SRX089166/SRR563668/SRR563668.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR10A-1_1pA	SRX089199		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_2.bam	SRR563635	@dbgap@:reads/SRP011999/SRS160238/SRX089199/SRR563635/SRR563635.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR10A-1_1pA	SRX089199		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_2.bam	SRR563635	@dbgap@:reads/SRP011999/SRS160238/SRX089199/SRR563635/SRR563635.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR10A-1_1pA	SRX089199		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_2.bam	SRR563635	@dbgap@:reads/SRP011999/SRS160238/SRX089199/SRR563635/SRR563635.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR10A-1_1pA	SRX089199		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_2.bam	SRR563635	@dbgap@:reads/SRP011999/SRS160238/SRX089199/SRR563635/SRR563635.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR10A-1_1pA	SRX089199		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_2.bam	SRR563635	@dbgap@:reads/SRP011999/SRS160238/SRX089199/SRR563635/SRR563635.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARFTR10A-1_1pA	SRX089199		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARFTR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARFTR-10A-01D ING_ALLSRG.PARFTR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_2.bam	SRR563635	@dbgap@:reads/SRP011999/SRS160238/SRX089199/SRR563635/SRR563635.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARFXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFXJ-09A-01D	DNA	EFO	SRS835612	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFXJ-09A-01D IL9096 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9096	SRX849228	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFXJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFXJ-09A-01D IL9096 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFXJ-09A-01D_ATGAGC.bam	SRR1767939	@dbgap@:reads/SRP011999/SRS835612/SRX849228/SRR1767939/SRR1767939.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARFXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARFXJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFXJ-14A-01D	DNA	EFO	SRS835609	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARFXJ-14A-01D IL9097 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9097	SRX849229	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARFXJ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARFXJ-14A-01D IL9097 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARFXJ-14A-01D_ATTCCT.bam	SRR1767940	@dbgap@:reads/SRP011999/SRS835609/SRX849229/SRR1767940/SRR1767940.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGBK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGBK-09A-01D	DNA	EFO	SRS880463	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGBK-09A-01D IL10537 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL10537	SRX896999	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGBK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGBK-09A-01D IL10537 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGBK-09A-01D_TACAGC.bam	SRR1825515	@dbgap@:reads/SRP011999/SRS880463/SRX896999/SRR1825515/SRR1825515.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGBK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGBK-14A-01D	DNA	EFO	SRS880467	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGBK-14A-01D IL10538 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL10538	SRX896996	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGBK-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGBK-14A-01D IL10538 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGBK-14A-01D_TATAAT.bam	SRR1825516	@dbgap@:reads/SRP011999/SRS880467/SRX896996/SRR1825516/SRR1825516.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGBR-09A-01D	DNA	EFO	SRS880628	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGBR-09A-01D IL10451 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10451	SRX896834	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGBR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGBR-09A-01D IL10451 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGBR-09A-01D_ACAGTG.bam	SRR1825517	@dbgap@:reads/SRP011999/SRS880628/SRX896834/SRR1825517/SRR1825517.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGBR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGBR-10A-01D	DNA	EFO	SRS880719	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGBR-10A-01D IL10452 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL10452	SRX896743	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGBR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGBR-10A-01D IL10452 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGBR-10A-01D_GCCAAT.bam	SRR1825518	@dbgap@:reads/SRP011999/SRS880719/SRX896743/SRR1825518/SRR1825518.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGBT-09A-01D	DNA	EFO	SRS880508	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGBT-09A-01D IL10754 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10754	SRX896955	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGBT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGBT-09A-01D IL10754 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGBT-09A-01D_CAACTA.bam	SRR1825582	@dbgap@:reads/SRP011999/SRS880508/SRX896955/SRR1825582/SRR1825582.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGBT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGBT-10A-01D	DNA	EFO	SRS880553	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGBT-10A-01D IL10755 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL10755	SRX896910	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGBT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGBT-10A-01D IL10755 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGBT-10A-01D_CACCGG.bam	SRR1825583	@dbgap@:reads/SRP011999/SRS880553/SRX896910/SRR1825583/SRR1825583.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGFL-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFL-04B-01D	DNA	EFO	SRS1124480	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGFL-04B-01D IL15664 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL15664	SRX1360696	P18r	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample SJALL015256_R1-TARGET-10-PARGFL-04B-01 in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGFL-04B-01D IL15664 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	SJALL015256_R1-TARGET-10-PARGFL-04B-01_CAGGCG_L007.bam	SRR2747627	@dbgap@:reads/SRP011999/SRS1124480/SRX1360696/SRR2747627/SRR2747627.sra	2	HG19						
TARGET-10-PARGFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFL-09A-01D	DNA	EFO	SRS835635	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGFL-09A-01D IL9104 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9104	SRX849255	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGFL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGFL-09A-01D IL9104 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGFL-09A-01D_ATCACG.bam	SRR1767941	@dbgap@:reads/SRP011999/SRS835635/SRX849255/SRR1767941/SRR1767941.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFL-10A-01D	DNA	EFO	SRS835637	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGFL-10A-01D IL9105 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9105	SRX849256	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGFL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGFL-10A-01D IL9105 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGFL-10A-01D_CGATGT.bam	SRR1767942	@dbgap@:reads/SRP011999/SRS835637/SRX849256/SRR1767942/SRR1767942.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGFX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFX-03A-01D	DNA	EFO	SRS1080838	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARGFX-03A-01D TARGET-10-PARGFX-03A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	62.6922	TARGET-10-PARGFX-03A-01_EXCAP_1	SRX1274433		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARGFX-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARGFX-03A-01D TARGET-10-PARGFX-03A-01_EXCAP_1 run	sequencing assay	EFO	179	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001624_D1-TARGET-10-PARGFX-03A-01.bam	SRR2485584	@dbgap@:reads/SRP011999/SRS1080838/SRX1274433/SRR2485584/SRR2485584.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGFX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGFX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFX-14A-01D	DNA	EFO	SRS1080837	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARGFX-14A-01D TARGET-10-PARGFX-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	153	51.7152	TARGET-10-PARGFX-14A-01_EXCAP_1	SRX1274434		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARGFX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARGFX-14A-01D TARGET-10-PARGFX-14A-01_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001624_G1-TARGET-10-PARGFX-14A-01.bam	SRR2485585	@dbgap@:reads/SRP011999/SRS1080837/SRX1274434/SRR2485585/SRR2485585.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGGI-09A-01D	DNA	EFO	SRS880543	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGGI-09A-01D IL10610 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL10610	SRX896920	P8_B31	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGGI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGGI-09A-01D IL10610 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGGI-09A-01D_CAGATC.bam	SRR1825584	@dbgap@:reads/SRP011999/SRS880543/SRX896920/SRR1825584/SRR1825584.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGGI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGGI-10A-01D	DNA	EFO	SRS880655	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGGI-10A-01D IL10611 library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	29.3	IL10611	SRX896807	P8_B31	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGGI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGGI-10A-01D IL10611 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGGI-10A-01D_ACTTGA.bam	SRR1825585	@dbgap@:reads/SRP011999/SRS880655/SRX896807/SRR1825585/SRR1825585.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-03A-01D	DNA	EFO	SRS160239	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-03A-01D ING_ALLSRG.PARGHW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW03A-1_1pA	SRX089180		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-03A-01D ING_ALLSRG.PARGHW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_3.bam	SRR564049	@dbgap@:reads/SRP011999/SRS160239/SRX089180/SRR564049/SRR564049.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-03A-01D	DNA	EFO	SRS160239	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-03A-01D ING_ALLSRG.PARGHW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW03A-1_1pA	SRX089180		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-03A-01D ING_ALLSRG.PARGHW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_3.bam	SRR564049	@dbgap@:reads/SRP011999/SRS160239/SRX089180/SRR564049/SRR564049.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-03A-01D	DNA	EFO	SRS160239	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-03A-01D ING_ALLSRG.PARGHW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW03A-1_1pA	SRX089180		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-03A-01D ING_ALLSRG.PARGHW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_3.bam	SRR564049	@dbgap@:reads/SRP011999/SRS160239/SRX089180/SRR564049/SRR564049.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-03A-01D	DNA	EFO	SRS160239	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-03A-01D ING_ALLSRG.PARGHW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW03A-1_1pA	SRX089180		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-03A-01D ING_ALLSRG.PARGHW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0161_A813NHABXX_3.bam	SRR564049	@dbgap@:reads/SRP011999/SRS160239/SRX089180/SRR564049/SRR564049.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-04A-01D ING_ALLSRG.PARGHW04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW04A-1_1pA	SRX089181		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-04A-01D ING_ALLSRG.PARGHW04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_5.bam	SRR563912	@dbgap@:reads/SRP011999/SRS160240/SRX089181/SRR563912/SRR563912.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-04A-01D ING_ALLSRG.PARGHW04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW04A-1_1pA	SRX089181		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-04A-01D ING_ALLSRG.PARGHW04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_5.bam	SRR563912	@dbgap@:reads/SRP011999/SRS160240/SRX089181/SRR563912/SRR563912.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-04A-01D ING_ALLSRG.PARGHW04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW04A-1_1pA	SRX089181		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-04A-01D ING_ALLSRG.PARGHW04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_5.bam	SRR563912	@dbgap@:reads/SRP011999/SRS160240/SRX089181/SRR563912/SRR563912.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-04A-01D ING_ALLSRG.PARGHW04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW04A-1_1pA	SRX089181		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-04A-01D ING_ALLSRG.PARGHW04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_5.bam	SRR563912	@dbgap@:reads/SRP011999/SRS160240/SRX089181/SRR563912/SRR563912.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-10A-01D	DNA	EFO	SRS160241	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW10A-1_1pA	SRX089182		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_7.bam	SRR563779	@dbgap@:reads/SRP011999/SRS160241/SRX089182/SRR563779/SRR563779.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-10A-01D	DNA	EFO	SRS160241	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW10A-1_1pA	SRX089182		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_7.bam	SRR563779	@dbgap@:reads/SRP011999/SRS160241/SRX089182/SRR563779/SRR563779.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-10A-01D	DNA	EFO	SRS160241	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW10A-1_1pA	SRX089182		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_7.bam	SRR563779	@dbgap@:reads/SRP011999/SRS160241/SRX089182/SRR563779/SRR563779.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-10A-01D	DNA	EFO	SRS160241	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW10A-1_1pA	SRX089182		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_7.bam	SRR563779	@dbgap@:reads/SRP011999/SRS160241/SRX089182/SRR563779/SRR563779.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-10A-01D	DNA	EFO	SRS160241	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW10A-1_1pA	SRX089182		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_7.bam	SRR563779	@dbgap@:reads/SRP011999/SRS160241/SRX089182/SRR563779/SRR563779.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARGHW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-10A-01D	DNA	EFO	SRS160241	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARGHW10A-1_1pA	SRX089182		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARGHW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARGHW-10A-01D ING_ALLSRG.PARGHW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_7.bam	SRR563779	@dbgap@:reads/SRP011999/SRS160241/SRX089182/SRR563779/SRR563779.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARGJH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGJH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGJH-09A-01D	DNA	EFO	SRS1080836	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARGJH-09A-01D TARGET-10-PARGJH-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	69.0343	TARGET-10-PARGJH-09A-01_EXCAP_1	SRX1274435		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARGJH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARGJH-09A-01D TARGET-10-PARGJH-09A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002212_D1-TARGET-10-PARGJH-09A-01.bam	SRR2485586	@dbgap@:reads/SRP011999/SRS1080836/SRX1274435/SRR2485586/SRR2485586.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGJH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGJH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGJH-10A-01D	DNA	EFO	SRS1080835	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARGJH-10A-01D TARGET-10-PARGJH-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	173	63.7384	TARGET-10-PARGJH-10A-01_EXCAP_1	SRX1274436		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARGJH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARGJH-10A-01D TARGET-10-PARGJH-10A-01_EXCAP_1 run	sequencing assay	EFO	185	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002212_G1-TARGET-10-PARGJH-10A-01.bam	SRR2485587	@dbgap@:reads/SRP011999/SRS1080835/SRX1274436/SRR2485587/SRR2485587.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGJY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGJY-09A-01D	DNA	EFO	SRS880510	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGJY-09A-01D IL10459 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10459	SRX896954	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGJY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGJY-09A-01D IL10459 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGJY-09A-01D_AGTCAA.bam	SRR1825519	@dbgap@:reads/SRP011999/SRS880510/SRX896954/SRR1825519/SRR1825519.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGJY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGJY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGJY-10A-01D	DNA	EFO	SRS880612	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGJY-10A-01D IL10460 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10460	SRX896851	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGJY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGJY-10A-01D IL10460 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGJY-10A-01D_AGTTCC.bam	SRR1825520	@dbgap@:reads/SRP011999/SRS880612/SRX896851/SRR1825520/SRR1825520.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGKD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGKD-09A-01D	DNA	EFO	SRS880645	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGKD-09A-01D IL10467 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10467	SRX896817	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGKD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGKD-09A-01D IL10467 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGKD-09A-01D_GTTTCG.bam	SRR1825521	@dbgap@:reads/SRP011999/SRS880645/SRX896817/SRR1825521/SRR1825521.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGKD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGKD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGKD-10A-01D	DNA	EFO	SRS880578	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGKD-10A-01D IL10468 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10468	SRX896885	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGKD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGKD-10A-01D IL10468 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGKD-10A-01D_CGTACG.bam	SRR1825522	@dbgap@:reads/SRP011999/SRS880578/SRX896885/SRR1825522/SRR1825522.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGLE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGLE-09A-01D	DNA	EFO	SRS880482	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGLE-09A-01D IL10475 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10475	SRX896981	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGLE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGLE-09A-01D IL10475 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGLE-09A-01D_CAACTA.bam	SRR1825523	@dbgap@:reads/SRP011999/SRS880482/SRX896981/SRR1825523/SRR1825523.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGLE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGLE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGLE-10A-01D	DNA	EFO	SRS872314	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGLE-10A-01D IL10476 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL10476	SRX896742	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGLE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGLE-10A-01D IL10476 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGLE-10A-01D_CACCGG.bam	SRR1825524	@dbgap@:reads/SRP011999/SRS872314/SRX896742/SRR1825524/SRR1825524.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGLI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGLI-09A-01D	DNA	EFO	SRS880630	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGLI-09A-01D IL10483 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10483	SRX896832	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGLI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGLI-09A-01D IL10483 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGLI-09A-01D_CGGAAT.bam	SRR1825525	@dbgap@:reads/SRP011999/SRS880630/SRX896832/SRR1825525/SRR1825525.sra	2	HG19						
TARGET-10-PARGLI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGLI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGLI-10A-01D	DNA	EFO	SRS880699	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGLI-10A-01D IL10484 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10484	SRX896763	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGLI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGLI-10A-01D IL10484 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGLI-10A-01D_CTAGCT.bam	SRR1825526	@dbgap@:reads/SRP011999/SRS880699/SRX896763/SRR1825526/SRR1825526.sra	2	HG19						
TARGET-10-PARGLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGLW-09A-01D	DNA	EFO	SRS880595	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGLW-09A-01D IL10491 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10491	SRX896868	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGLW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGLW-09A-01D IL10491 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGLW-09A-01D_TCATTC.bam	SRR1825527	@dbgap@:reads/SRP011999/SRS880595/SRX896868/SRR1825527/SRR1825527.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGLW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGLW-10A-01D	DNA	EFO	SRS880635	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGLW-10A-01D IL10492 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10492	SRX896827	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGLW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGLW-10A-01D IL10492 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGLW-10A-01D_TCCCGA.bam	SRR1825528	@dbgap@:reads/SRP011999/SRS880635/SRX896827/SRR1825528/SRR1825528.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGMW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGMW-09A-01D	DNA	EFO	SRS1080834	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARGMW-09A-01D TARGET-10-PARGMW-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	179	83.4208	TARGET-10-PARGMW-09A-01_EXCAP_1	SRX1274437		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARGMW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARGMW-09A-01D TARGET-10-PARGMW-09A-01_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002228_D1-TARGET-10-PARGMW-09A-01.bam	SRR2485588	@dbgap@:reads/SRP011999/SRS1080834/SRX1274437/SRR2485588/SRR2485588.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGMW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGMW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGMW-10A-01D	DNA	EFO	SRS1080708	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARGMW-10A-01D TARGET-10-PARGMW-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	62.2481	TARGET-10-PARGMW-10A-01_EXCAP_1	SRX1274438		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARGMW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARGMW-10A-01D TARGET-10-PARGMW-10A-01_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002228_G1-TARGET-10-PARGMW-10A-01.bam	SRR2485589	@dbgap@:reads/SRP011999/SRS1080708/SRX1274438/SRR2485589/SRR2485589.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGUZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGUZ-09A-01D	DNA	EFO	SRS1080833	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARGUZ-09A-01D TARGET-10-PARGUZ-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	63.9325	TARGET-10-PARGUZ-09A-01_EXCAP_1	SRX1274439		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARGUZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARGUZ-09A-01D TARGET-10-PARGUZ-09A-01_EXCAP_1 run	sequencing assay	EFO	180	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002231_D1-TARGET-10-PARGUZ-09A-01.bam	SRR2485590	@dbgap@:reads/SRP011999/SRS1080833/SRX1274439/SRR2485590/SRR2485590.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGUZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGUZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGUZ-10A-01D	DNA	EFO	SRS1080832	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARGUZ-10A-01D TARGET-10-PARGUZ-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	61.5985	TARGET-10-PARGUZ-10A-01_EXCAP_1	SRX1274440		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARGUZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARGUZ-10A-01D TARGET-10-PARGUZ-10A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002231_G1-TARGET-10-PARGUZ-10A-01.bam	SRR2485591	@dbgap@:reads/SRP011999/SRS1080832/SRX1274440/SRR2485591/SRR2485591.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGYV-09A-01D	DNA	EFO	SRS880639	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGYV-09A-01D IL10499 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10499	SRX896823	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGYV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGYV-09A-01D IL10499 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGYV-09A-01D_ACAGTG.bam	SRR1825529	@dbgap@:reads/SRP011999/SRS880639/SRX896823/SRR1825529/SRR1825529.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARGYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARGYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGYV-10A-01D	DNA	EFO	SRS880673	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARGYV-10A-01D IL10500 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL10500	SRX896789	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARGYV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARGYV-10A-01D IL10500 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARGYV-10A-01D_GCCAAT.bam	SRR1825530	@dbgap@:reads/SRP011999/SRS880673/SRX896789/SRR1825530/SRR1825530.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHAN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHAN-09A-01D	DNA	EFO	SRS880477	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHAN-09A-01D IL10507 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10507	SRX896986	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHAN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHAN-09A-01D IL10507 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHAN-09A-01D_AGTCAA.bam	SRR1825531	@dbgap@:reads/SRP011999/SRS880477/SRX896986/SRR1825531/SRR1825531.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHAN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHAN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHAN-10A-01D	DNA	EFO	SRS880624	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHAN-10A-01D IL10508 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10508	SRX896838	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHAN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHAN-10A-01D IL10508 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHAN-10A-01D_AGTTCC.bam	SRR1825532	@dbgap@:reads/SRP011999/SRS880624/SRX896838/SRR1825532/SRR1825532.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHBI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHBI-09A-01D	DNA	EFO	SRS1080831	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARHBI-09A-01D SJTALL022433_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	154	54.5583	SJTALL022433_D1_EXCAP_1	SRX1274441		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARHBI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARHBI-09A-01D SJTALL022433_D1_EXCAP_1 run	sequencing assay	EFO	164	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL022433_D1-PARHBI.bam	SRR2485592	@dbgap@:reads/SRP011999/SRS1080831/SRX1274441/SRR2485592/SRR2485592.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHBI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHBI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHBI-10A-01D	DNA	EFO	SRS1080830	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARHBI-10A-01D SJTALL022433_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	152	49.159	SJTALL022433_G1_EXCAP_1	SRX1274442		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARHBI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARHBI-10A-01D SJTALL022433_G1_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL022433_G1-PARHBI.bam	SRR2485593	@dbgap@:reads/SRP011999/SRS1080830/SRX1274442/SRR2485593/SRR2485593.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHBT-09A-01D	DNA	EFO	SRS890959	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHBT-09A-01D IL11277 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11277	SRX976035	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHBT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHBT-09A-01D IL11277 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHBT-09A-01D_CACGAT.bam	SRR1949461	@dbgap@:reads/SRP011999/SRS890959/SRX976035/SRR1949461/SRR1949461.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHBT-10B	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHBT-10B-01D	DNA	EFO	SRS890980	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHBT-10B-01D IL11278 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11278	SRX976012	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHBT-10B-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHBT-10B-01D IL11278 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHBT-10B-01D_CACTCA.bam	SRR1949462	@dbgap@:reads/SRP011999/SRS890980/SRX976012/SRR1949462/SRR1949462.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHEA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHEA-09A-01D	DNA	EFO	SRS1080829	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARHEA-09A-01D TARGET-10-PARHEA-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	173	73.7586	TARGET-10-PARHEA-09A-01_EXCAP_1	SRX1274443		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARHEA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARHEA-09A-01D TARGET-10-PARHEA-09A-01_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002237_D1-TARGET-10-PARHEA-09A-01.bam	SRR2485594	@dbgap@:reads/SRP011999/SRS1080829/SRX1274443/SRR2485594/SRR2485594.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHEA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHEA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHEA-10A-01D	DNA	EFO	SRS1080828	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARHEA-10A-01D TARGET-10-PARHEA-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	57.9463	TARGET-10-PARHEA-10A-01_EXCAP_1	SRX1274444		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARHEA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARHEA-10A-01D TARGET-10-PARHEA-10A-01_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002237_G1-TARGET-10-PARHEA-10A-01.bam	SRR2485595	@dbgap@:reads/SRP011999/SRS1080828/SRX1274444/SRR2485595/SRR2485595.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHES-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHES-09A-01D	DNA	EFO	SRS835636	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHES-09A-01D IL9112 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9112	SRX849257	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHES-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHES-09A-01D IL9112 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHES-09A-01D_TAGCTT.bam	SRR1767943	@dbgap@:reads/SRP011999/SRS835636/SRX849257/SRR1767943/SRR1767943.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHES-14A-01D	DNA	EFO	SRS835639	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHES-14A-01D IL9113 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9113	SRX849258	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHES-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHES-14A-01D IL9113 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHES-14A-01D_GGCTAC.bam	SRR1767944	@dbgap@:reads/SRP011999/SRS835639/SRX849258/SRR1767944/SRR1767944.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHFF-09A-01D	DNA	EFO	SRS880671	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHFF-09A-01D IL10515 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL10515	SRX896790	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHFF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHFF-09A-01D IL10515 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHFF-09A-01D_GTTTCG.bam	SRR1825533	@dbgap@:reads/SRP011999/SRS880671/SRX896790/SRR1825533/SRR1825533.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHFF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHFF-10A-01D	DNA	EFO	SRS880527	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHFF-10A-01D IL10516 library	PAIRED	GENOMIC	WXS	Hybrid Selection	225	30	IL10516	SRX896936	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHFF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHFF-10A-01D IL10516 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHFF-10A-01D_CGTACG.bam	SRR1825534	@dbgap@:reads/SRP011999/SRS880527/SRX896936/SRR1825534/SRR1825534.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHLM-09A-01D	DNA	EFO	SRS880587	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHLM-09A-01D IL10884 library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	26.5	IL10884	SRX896876	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHLM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHLM-09A-01D IL10884 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHLM-09A-01D_TTAGGC.bam	SRR1825586	@dbgap@:reads/SRP011999/SRS880587/SRX896876/SRR1825586/SRR1825586.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHLM-10A-01D	DNA	EFO	SRS880494	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHLM-10A-01D IL10885 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	26.4	IL10885	SRX896969	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHLM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHLM-10A-01D IL10885 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHLM-10A-01D_TGACCA.bam	SRR1825587	@dbgap@:reads/SRP011999/SRS880494/SRX896969/SRR1825587/SRR1825587.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHMT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHMT-09A-01D	DNA	EFO	SRS880618	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHMT-09A-01D IL10360 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10360	SRX896844	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHMT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHMT-09A-01D IL10360 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHMT-09A-01D_ACAGTG.bam	SRR1825403	@dbgap@:reads/SRP011999/SRS880618/SRX896844/SRR1825403/SRR1825403.sra	2	HG19						
TARGET-10-PARHMT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHMT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHMT-14A-01D	DNA	EFO	SRS880690	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHMT-14A-01D IL10361 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL10361	SRX896772	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHMT-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHMT-14A-01D IL10361 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHMT-14A-01D_GCCAAT.bam	SRR1825404	@dbgap@:reads/SRP011999/SRS880690/SRX896772/SRR1825404/SRR1825404.sra	2	HG19						
TARGET-10-PARHSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHSD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHSD-09A-01D	DNA	EFO	SRS880566	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHSD-09A-01D IL10892 library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	26.5	IL10892	SRX896897	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHSD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHSD-09A-01D IL10892 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHSD-09A-01D_GGCTAC.bam	SRR1825588	@dbgap@:reads/SRP011999/SRS880566/SRX896897/SRR1825588/SRR1825588.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARHSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARHSD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHSD-10A-01D	DNA	EFO	SRS880583	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARHSD-10A-01D IL10893 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10893	SRX896880	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARHSD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARHSD-10A-01D IL10893 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARHSD-10A-01D_CTTGTA.bam	SRR1825589	@dbgap@:reads/SRP011999/SRS880583/SRX896880/SRR1825589/SRR1825589.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-03A-01D ING_ALLSRG.PARIAD03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD03A-1_1pA	SRX089183		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-03A-01D ING_ALLSRG.PARIAD03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_8.bam	SRR563780	@dbgap@:reads/SRP011999/SRS160242/SRX089183/SRR563780/SRR563780.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-03A-01D ING_ALLSRG.PARIAD03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD03A-1_1pA	SRX089183		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-03A-01D ING_ALLSRG.PARIAD03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_8.bam	SRR563780	@dbgap@:reads/SRP011999/SRS160242/SRX089183/SRR563780/SRR563780.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-03A-01D ING_ALLSRG.PARIAD03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD03A-1_1pA	SRX089183		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-03A-01D ING_ALLSRG.PARIAD03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_8.bam	SRR563780	@dbgap@:reads/SRP011999/SRS160242/SRX089183/SRR563780/SRR563780.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-03A-01D ING_ALLSRG.PARIAD03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD03A-1_1pA	SRX089183		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-03A-01D ING_ALLSRG.PARIAD03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101222_SN580_0036_B80YFDABXX_8.bam	SRR563780	@dbgap@:reads/SRP011999/SRS160242/SRX089183/SRR563780/SRR563780.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-04A-01D	DNA	EFO	SRS160243	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-04A-01D ING_ALLSRG.PARIAD04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD04A-1_1pA	SRX089184		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-04A-01D ING_ALLSRG.PARIAD04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_1.bam	SRR563913	@dbgap@:reads/SRP011999/SRS160243/SRX089184/SRR563913/SRR563913.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-04A-01D	DNA	EFO	SRS160243	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-04A-01D ING_ALLSRG.PARIAD04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD04A-1_1pA	SRX089184		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-04A-01D ING_ALLSRG.PARIAD04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_1.bam	SRR563913	@dbgap@:reads/SRP011999/SRS160243/SRX089184/SRR563913/SRR563913.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-04A-01D	DNA	EFO	SRS160243	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-04A-01D ING_ALLSRG.PARIAD04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD04A-1_1pA	SRX089184		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-04A-01D ING_ALLSRG.PARIAD04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_1.bam	SRR563913	@dbgap@:reads/SRP011999/SRS160243/SRX089184/SRR563913/SRR563913.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-04A-01D	DNA	EFO	SRS160243	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-04A-01D ING_ALLSRG.PARIAD04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD04A-1_1pA	SRX089184		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-04A-01D ING_ALLSRG.PARIAD04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_1.bam	SRR563913	@dbgap@:reads/SRP011999/SRS160243/SRX089184/SRR563913/SRR563913.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD10A-1_1pA	SRX089167		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_6.bam	SRR564075	@dbgap@:reads/SRP011999/SRS160244/SRX089167/SRR564075/SRR564075.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD10A-1_1pA	SRX089167		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_6.bam	SRR564075	@dbgap@:reads/SRP011999/SRS160244/SRX089167/SRR564075/SRR564075.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD10A-1_1pA	SRX089167		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_6.bam	SRR564075	@dbgap@:reads/SRP011999/SRS160244/SRX089167/SRR564075/SRR564075.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD10A-1_1pA	SRX089167		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_6.bam	SRR564075	@dbgap@:reads/SRP011999/SRS160244/SRX089167/SRR564075/SRR564075.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD10A-1_1pA	SRX089167		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_6.bam	SRR564075	@dbgap@:reads/SRP011999/SRS160244/SRX089167/SRR564075/SRR564075.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARIAD10A-1_1pA	SRX089167		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARIAD-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARIAD-10A-01D ING_ALLSRG.PARIAD10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110113_SN142_0313_B81B5HABXX_6.bam	SRR564075	@dbgap@:reads/SRP011999/SRS160244/SRX089167/SRR564075/SRR564075.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARIBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIBB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIBB-09A-01D	DNA	EFO	SRS880636	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARIBB-09A-01D IL10900 library	PAIRED	GENOMIC	WXS	Hybrid Selection	177	26.6	IL10900	SRX896826	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARIBB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARIBB-09A-01D IL10900 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARIBB-09A-01D_GTGAAA.bam	SRR1825590	@dbgap@:reads/SRP011999/SRS880636/SRX896826/SRR1825590/SRR1825590.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIBB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIBB-10A-01D	DNA	EFO	SRS880540	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARIBB-10A-01D IL10901 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10901	SRX896923	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARIBB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARIBB-10A-01D IL10901 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARIBB-10A-01D_GTGGCC.bam	SRR1825591	@dbgap@:reads/SRP011999/SRS880540/SRX896923/SRR1825591/SRR1825591.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIIA-09A-01D	DNA	EFO	SRS880617	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARIIA-09A-01D IL10908 library	PAIRED	GENOMIC	WXS	Hybrid Selection	169	26	IL10908	SRX896846	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARIIA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARIIA-09A-01D IL10908 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARIIA-09A-01D_ATTCCT.bam	SRR1825592	@dbgap@:reads/SRP011999/SRS880617/SRX896846/SRR1825592/SRR1825592.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIIA-10A-01D	DNA	EFO	SRS880568	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARIIA-10A-01D IL10909 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	26.2	IL10909	SRX896894	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARIIA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARIIA-10A-01D IL10909 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARIIA-10A-01D_CAAAAG.bam	SRR1825593	@dbgap@:reads/SRP011999/SRS880568/SRX896894/SRR1825593/SRR1825593.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARILG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARILG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARILG-09A-01D	DNA	EFO	SRS1080827	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARILG-09A-01D TARGET-10-PARILG-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	58.1278	TARGET-10-PARILG-09A-01_EXCAP_1	SRX1274445		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARILG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARILG-09A-01D TARGET-10-PARILG-09A-01_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002241_D1-TARGET-10-PARILG-09A-01.bam	SRR2485596	@dbgap@:reads/SRP011999/SRS1080827/SRX1274445/SRR2485596/SRR2485596.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARILG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARILG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARILG-14A-01D	DNA	EFO	SRS1080826	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARILG-14A-01D TARGET-10-PARILG-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	59.527	TARGET-10-PARILG-14A-01_EXCAP_1	SRX1274446		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARILG-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARILG-14A-01D TARGET-10-PARILG-14A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002241_G1-TARGET-10-PARILG-14A-01.bam	SRR2485597	@dbgap@:reads/SRP011999/SRS1080826/SRX1274446/SRR2485597/SRR2485597.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIYD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIYD-09A-01D	DNA	EFO	SRS835641	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARIYD-09A-01D IL9120 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9120	SRX849259	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARIYD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARIYD-09A-01D IL9120 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARIYD-09A-01D_GTCCGC.bam	SRR1767945	@dbgap@:reads/SRP011999/SRS835641/SRX849259/SRR1767945/SRR1767945.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIYD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIYD-10A-01D	DNA	EFO	SRS835638	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARIYD-10A-01D IL9121 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9121	SRX849260	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARIYD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARIYD-10A-01D IL9121 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARIYD-10A-01D_GTGAAA.bam	SRR1767946	@dbgap@:reads/SRP011999/SRS835638/SRX849260/SRR1767946/SRR1767946.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIZN-09A-01D	DNA	EFO	SRS835642	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARIZN-09A-01D IL9128 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9128	SRX849261	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARIZN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARIZN-09A-01D IL9128 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARIZN-09A-01D_ATGAGC.bam	SRR1767947	@dbgap@:reads/SRP011999/SRS835642/SRX849261/SRR1767947/SRR1767947.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARIZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARIZN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIZN-10A-01D	DNA	EFO	SRS835640	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARIZN-10A-01D IL9129 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL9129	SRX849262	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARIZN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARIZN-10A-01D IL9129 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARIZN-10A-01D_ATTCCT.bam	SRR1767948	@dbgap@:reads/SRP011999/SRS835640/SRX849262/SRR1767948/SRR1767948.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJAY-09A-01D	DNA	EFO	SRS835666	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJAY-09A-01D IL9156 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9156	SRX849285	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJAY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJAY-09A-01D IL9156 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJAY-09A-01D_ATCACG.bam	SRR1767949	@dbgap@:reads/SRP011999/SRS835666/SRX849285/SRR1767949/SRR1767949.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJAY-10A-01D	DNA	EFO	SRS835665	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJAY-10A-01D IL9157 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9157	SRX849286	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJAY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJAY-10A-01D IL9157 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJAY-10A-01D_CGATGT.bam	SRR1767950	@dbgap@:reads/SRP011999/SRS835665/SRX849286/SRR1767950/SRR1767950.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJBB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJBB-09A-01D	DNA	EFO	SRS880481	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJBB-09A-01D IL10523 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL10523	SRX896982	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJBB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJBB-09A-01D IL10523 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJBB-09A-01D_CAACTA.bam	SRR1825535	@dbgap@:reads/SRP011999/SRS880481/SRX896982/SRR1825535/SRR1825535.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJBB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJBB-10A-01D	DNA	EFO	SRS880468	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJBB-10A-01D IL10524 library	PAIRED	GENOMIC	WXS	Hybrid Selection	229	30.3	IL10524	SRX896995	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJBB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJBB-10A-01D IL10524 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJBB-10A-01D_CACCGG.bam	SRR1825536	@dbgap@:reads/SRP011999/SRS880468/SRX896995/SRR1825536/SRR1825536.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJBZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJBZ-03A-01D	DNA	EFO	SRS880715	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJBZ-03A-01D IL10374 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10374	SRX896747	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJBZ-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJBZ-03A-01D IL10374 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJBZ-03A-01D_GTTTCG.bam	SRR1825405	@dbgap@:reads/SRP011999/SRS880715/SRX896747/SRR1825405/SRR1825405.sra	2	HG19						
TARGET-10-PARJBZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJBZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJBZ-10A-01D	DNA	EFO	SRS880548	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJBZ-10A-01D IL10375 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10375	SRX896914	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJBZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJBZ-10A-01D IL10375 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJBZ-10A-01D_CGTACG.bam	SRR1825406	@dbgap@:reads/SRP011999/SRS880548/SRX896914/SRR1825406/SRR1825406.sra	2	HG19						
TARGET-10-PARJJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJJP-09A-01D	DNA	EFO	SRS880686	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJJP-09A-01D IL10728 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10728	SRX896776	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJJP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJJP-09A-01D IL10728 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJJP-09A-01D_TTAGGC.bam	SRR1825594	@dbgap@:reads/SRP011999/SRS880686/SRX896776/SRR1825594/SRR1825594.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJJP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJJP-10A-01D	DNA	EFO	SRS880712	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJJP-10A-01D IL10729 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10729	SRX896750	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJJP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJJP-10A-01D IL10729 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJJP-10A-01D_TGACCA.bam	SRR1825595	@dbgap@:reads/SRP011999/SRS880712/SRX896750/SRR1825595/SRR1825595.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJLF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLF-09A-01D	DNA	EFO	SRS1080825	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARJLF-09A-01D TARGET-10-PARJLF-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	169	70.622	TARGET-10-PARJLF-09A-01_EXCAP_1	SRX1274447		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARJLF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARJLF-09A-01D TARGET-10-PARJLF-09A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001614_D1-TARGET-10-PARJLF-09A-01.bam	SRR2485598	@dbgap@:reads/SRP011999/SRS1080825/SRX1274447/SRR2485598/SRR2485598.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJLF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJLF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLF-10A-01D	DNA	EFO	SRS1080824	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARJLF-10A-01D TARGET-10-PARJLF-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	169	68.8448	TARGET-10-PARJLF-10A-01_EXCAP_1	SRX1274448		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARJLF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARJLF-10A-01D TARGET-10-PARJLF-10A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001614_G1-TARGET-10-PARJLF-10A-01.bam	SRR2485599	@dbgap@:reads/SRP011999/SRS1080824/SRX1274448/SRR2485599/SRR2485599.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJMY-09A-01D	DNA	EFO	SRS880584	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJMY-09A-01D IL10736 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10736	SRX896879	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJMY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJMY-09A-01D IL10736 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJMY-09A-01D_GGCTAC.bam	SRR1825596	@dbgap@:reads/SRP011999/SRS880584/SRX896879/SRR1825596/SRR1825596.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJMY-10A-01D	DNA	EFO	SRS880609	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJMY-10A-01D IL10737 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL10737	SRX896854	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJMY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJMY-10A-01D IL10737 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJMY-10A-01D_CTTGTA.bam	SRR1825597	@dbgap@:reads/SRP011999/SRS880609/SRX896854/SRR1825597/SRR1825597.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJNL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJNL-09A-01D	DNA	EFO	SRS880506	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJNL-09A-01D IL10744 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10744	SRX896957	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJNL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJNL-09A-01D IL10744 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJNL-09A-01D_GTGAAA.bam	SRR1825598	@dbgap@:reads/SRP011999/SRS880506/SRX896957/SRR1825598/SRR1825598.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJNL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJNL-10A-01D	DNA	EFO	SRS880647	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJNL-10A-01D IL10745 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10745	SRX896813	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJNL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJNL-10A-01D IL10745 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJNL-10A-01D_GTGGCC.bam	SRR1825599	@dbgap@:reads/SRP011999/SRS880647/SRX896813/SRR1825599/SRR1825599.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJNR-09A-01D	DNA	EFO	SRS880464	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJNR-09A-01D IL10752 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10752	SRX896998	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJNR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJNR-09A-01D IL10752 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJNR-09A-01D_ATTCCT.bam	SRR1825600	@dbgap@:reads/SRP011999/SRS880464/SRX896998/SRR1825600/SRR1825600.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJNR-10A-01D	DNA	EFO	SRS880512	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJNR-10A-01D IL10753 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10753	SRX896951	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJNR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJNR-10A-01D IL10753 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJNR-10A-01D_CAAAAG.bam	SRR1825601	@dbgap@:reads/SRP011999/SRS880512/SRX896951/SRR1825601/SRR1825601.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJNX-09A-01D	DNA	EFO	SRS835667	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJNX-09A-01D IL9164 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9164	SRX849287	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJNX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJNX-09A-01D IL9164 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJNX-09A-01D_TAGCTT.bam	SRR1767951	@dbgap@:reads/SRP011999/SRS835667/SRX849287/SRR1767951/SRR1767951.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJNX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJNX-14A-01D	DNA	EFO	SRS835668	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJNX-14A-01D IL9165 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9165	SRX849288	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJNX-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJNX-14A-01D IL9165 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJNX-14A-01D_GGCTAC.bam	SRR1767952	@dbgap@:reads/SRP011999/SRS835668/SRX849288/SRR1767952/SRR1767952.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJPL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJPL-09A-01D	DNA	EFO	SRS835679	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJPL-09A-01D IL9172 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9172	SRX849300	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJPL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJPL-09A-01D IL9172 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJPL-09A-01D_GTCCGC.bam	SRR1767953	@dbgap@:reads/SRP011999/SRS835679/SRX849300/SRR1767953/SRR1767953.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJPL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJPL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJPL-10A-01D	DNA	EFO	SRS835691	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJPL-10A-01D IL9173 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9173	SRX849301	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJPL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJPL-10A-01D IL9173 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJPL-10A-01D_GTGAAA.bam	SRR1767954	@dbgap@:reads/SRP011999/SRS835691/SRX849301/SRR1767954/SRR1767954.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJRT-09A-01D	DNA	EFO	SRS880496	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJRT-09A-01D IL10608 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL10608	SRX896967	P8_B31	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJRT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJRT-09A-01D IL10608 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJRT-09A-01D_ACAGTG.bam	SRR1825602	@dbgap@:reads/SRP011999/SRS880496/SRX896967/SRR1825602/SRR1825602.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJRT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJRT-10A-01D	DNA	EFO	SRS880499	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJRT-10A-01D IL10609 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL10609	SRX896964	P8_B31	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJRT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJRT-10A-01D IL10609 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJRT-10A-01D_GCCAAT.bam	SRR1825603	@dbgap@:reads/SRP011999/SRS880499/SRX896964/SRR1825603/SRR1825603.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJWB-09A-01D	DNA	EFO	SRS891018	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJWB-09A-01D IL11285 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11285	SRX975979	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJWB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJWB-09A-01D IL11285 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJWB-09A-01D_CTATAC.bam	SRR1949463	@dbgap@:reads/SRP011999/SRS891018/SRX975979/SRR1949463/SRR1949463.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJWB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJWB-14A-01D	DNA	EFO	SRS891027	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJWB-14A-01D IL11286 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11286	SRX975971	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJWB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJWB-14A-01D IL11286 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJWB-14A-01D_CTCAGA.bam	SRR1949464	@dbgap@:reads/SRP011999/SRS891027/SRX975971/SRR1949464/SRR1949464.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJXW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJXW-09A-01D	DNA	EFO	SRS835694	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJXW-09A-01D IL9180 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9180	SRX849302	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJXW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJXW-09A-01D IL9180 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJXW-09A-01D_ATGAGC.bam	SRR1767955	@dbgap@:reads/SRP011999/SRS835694/SRX849302/SRR1767955/SRR1767955.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJXW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJXW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJXW-14A-01D	DNA	EFO	SRS835681	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJXW-14A-01D IL9181 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9181	SRX849303	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJXW-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJXW-14A-01D IL9181 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJXW-14A-01D_ATTCCT.bam	SRR1767956	@dbgap@:reads/SRP011999/SRS835681/SRX849303/SRR1767956/SRR1767956.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJYV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJYV-09A-01D	DNA	EFO	SRS945074	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJYV-09A-01D IL12233 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL12233	SRX1037922	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJYV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJYV-09A-01D IL12233 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJYV-09A-01D_GTCCGC.bam	SRR2039520	@dbgap@:reads/SRP011999/SRS945074/SRX1037922/SRR2039520/SRR2039520.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARJYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJYV-10A-01D	DNA	EFO	SRS945075	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARJYV-10A-01D IL12235 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL12235	SRX1037921	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARJYV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARJYV-10A-01D IL12235 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARJYV-10A-01D_GTGGCC.bam	SRR2039521	@dbgap@:reads/SRP011999/SRS945075/SRX1037921/SRR2039521/SRR2039521.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-03A-01D	DNA	EFO	SRS160245	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-03A-01D ING_ALLSRG.PARJZZ03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ03A-1_1pA	SRX089159		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-03A-01D ING_ALLSRG.PARJZZ03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_6.bam	SRR564051	@dbgap@:reads/SRP011999/SRS160245/SRX089159/SRR564051/SRR564051.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-03A-01D	DNA	EFO	SRS160245	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-03A-01D ING_ALLSRG.PARJZZ03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ03A-1_1pA	SRX089159		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-03A-01D ING_ALLSRG.PARJZZ03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_6.bam	SRR564051	@dbgap@:reads/SRP011999/SRS160245/SRX089159/SRR564051/SRR564051.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-03A-01D	DNA	EFO	SRS160245	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-03A-01D ING_ALLSRG.PARJZZ03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ03A-1_1pA	SRX089159		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-03A-01D ING_ALLSRG.PARJZZ03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_6.bam	SRR564051	@dbgap@:reads/SRP011999/SRS160245/SRX089159/SRR564051/SRR564051.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-03A-01D	DNA	EFO	SRS160245	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-03A-01D ING_ALLSRG.PARJZZ03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ03A-1_1pA	SRX089159		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-03A-01D ING_ALLSRG.PARJZZ03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_6.bam	SRR564051	@dbgap@:reads/SRP011999/SRS160245/SRX089159/SRR564051/SRR564051.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-04A-01D ING_ALLSRG.PARJZZ04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ04A-1_1pA	SRX089191		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-04A-01D ING_ALLSRG.PARJZZ04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_2.bam	SRR563944	@dbgap@:reads/SRP011999/SRS160246/SRX089191/SRR563944/SRR563944.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-04A-01D ING_ALLSRG.PARJZZ04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ04A-1_1pA	SRX089191		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-04A-01D ING_ALLSRG.PARJZZ04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_2.bam	SRR563944	@dbgap@:reads/SRP011999/SRS160246/SRX089191/SRR563944/SRR563944.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-04A-01D ING_ALLSRG.PARJZZ04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ04A-1_1pA	SRX089191		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-04A-01D ING_ALLSRG.PARJZZ04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_2.bam	SRR563944	@dbgap@:reads/SRP011999/SRS160246/SRX089191/SRR563944/SRR563944.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-04A-01D ING_ALLSRG.PARJZZ04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ04A-1_1pA	SRX089191		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-04A-01D ING_ALLSRG.PARJZZ04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_2.bam	SRR563944	@dbgap@:reads/SRP011999/SRS160246/SRX089191/SRR563944/SRR563944.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ10A-1_1pA	SRX089160		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_4.bam	SRR564139	@dbgap@:reads/SRP011999/SRS160247/SRX089160/SRR564139/SRR564139.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ10A-1_1pA	SRX089160		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_4.bam	SRR564139	@dbgap@:reads/SRP011999/SRS160247/SRX089160/SRR564139/SRR564139.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ10A-1_1pA	SRX089160		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_4.bam	SRR564139	@dbgap@:reads/SRP011999/SRS160247/SRX089160/SRR564139/SRR564139.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ10A-1_1pA	SRX089160		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_4.bam	SRR564139	@dbgap@:reads/SRP011999/SRS160247/SRX089160/SRR564139/SRR564139.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ10A-1_1pA	SRX089160		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_4.bam	SRR564139	@dbgap@:reads/SRP011999/SRS160247/SRX089160/SRR564139/SRR564139.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARJZZ10A-1_1pA	SRX089160		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARJZZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARJZZ-10A-01D ING_ALLSRG.PARJZZ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_4.bam	SRR564139	@dbgap@:reads/SRP011999/SRS160247/SRX089160/SRR564139/SRR564139.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARKBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKBT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKBT-09A-01D	DNA	EFO	SRS880564	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKBT-09A-01D IL10616 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10616	SRX896899	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKBT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKBT-09A-01D IL10616 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKBT-09A-01D_AGTCAA.bam	SRR1825604	@dbgap@:reads/SRP011999/SRS880564/SRX896899/SRR1825604/SRR1825604.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKBT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKBT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKBT-10A-01D	DNA	EFO	SRS880651	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKBT-10A-01D IL10617 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL10617	SRX896811	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKBT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKBT-10A-01D IL10617 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKBT-10A-01D_AGTTCC.bam	SRR1825605	@dbgap@:reads/SRP011999/SRS880651/SRX896811/SRR1825605/SRR1825605.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKEN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKEN-03A-01D	DNA	EFO	SRS880484	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKEN-03A-01D IL10624 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10624	SRX896979	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKEN-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKEN-03A-01D IL10624 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKEN-03A-01D_GTTTCG.bam	SRR1825606	@dbgap@:reads/SRP011999/SRS880484/SRX896979/SRR1825606/SRR1825606.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKEN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKEN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKEN-10A-01D	DNA	EFO	SRS880560	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKEN-10A-01D IL10625 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10625	SRX896903	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKEN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKEN-10A-01D IL10625 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKEN-10A-01D_CGTACG.bam	SRR1825607	@dbgap@:reads/SRP011999/SRS880560/SRX896903/SRR1825607/SRR1825607.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKEU-09A-01D	DNA	EFO	SRS891025	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKEU-09A-01D IL11293 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11293	SRX975972	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKEU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKEU-09A-01D IL11293 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKEU-09A-01D_TCGAAG.bam	SRR1949465	@dbgap@:reads/SRP011999/SRS891025/SRX975972/SRR1949465/SRR1949465.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKEU-14A-01D	DNA	EFO	SRS891005	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKEU-14A-01D IL11294 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11294	SRX975991	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKEU-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKEU-14A-01D IL11294 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKEU-14A-01D_TCGGCA.bam	SRR1949466	@dbgap@:reads/SRP011999/SRS891005/SRX975991/SRR1949466/SRR1949466.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKFN-09A-01D	DNA	EFO	SRS880558	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKFN-09A-01D IL10886 library	PAIRED	GENOMIC	WXS	Hybrid Selection	178	26.7	IL10886	SRX896905	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKFN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKFN-09A-01D IL10886 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKFN-09A-01D_ACAGTG.bam	SRR1825608	@dbgap@:reads/SRP011999/SRS880558/SRX896905/SRR1825608/SRR1825608.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKFN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKFN-10A-01D	DNA	EFO	SRS880549	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKFN-10A-01D IL10887 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10887	SRX896916	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKFN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKFN-10A-01D IL10887 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKFN-10A-01D_GCCAAT.bam	SRR1825609	@dbgap@:reads/SRP011999/SRS880549/SRX896916/SRR1825609/SRR1825609.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKFU-09A-01D	DNA	EFO	SRS880479	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKFU-09A-01D IL10894 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	26.5	IL10894	SRX896984	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKFU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKFU-09A-01D IL10894 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKFU-09A-01D_AGTCAA.bam	SRR1825610	@dbgap@:reads/SRP011999/SRS880479/SRX896984/SRR1825610/SRR1825610.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKFU-10A-01D	DNA	EFO	SRS880562	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKFU-10A-01D IL10895 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10895	SRX896901	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKFU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKFU-10A-01D IL10895 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKFU-10A-01D_AGTTCC.bam	SRR1825611	@dbgap@:reads/SRP011999/SRS880562/SRX896901/SRR1825611/SRR1825611.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKLK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKLK-09A-01D	DNA	EFO	SRS835616	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKLK-09A-01D IL9074 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL9074	SRX849230	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKLK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKLK-09A-01D IL9074 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKLK-09A-01D_TGACCA.bam	SRR1767957	@dbgap@:reads/SRP011999/SRS835616/SRX849230/SRR1767957/SRR1767957.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKLK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKLK-14A-01D	DNA	EFO	SRS835611	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKLK-14A-01D IL9075 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL9075	SRX849231	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKLK-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKLK-14A-01D IL9075 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKLK-14A-01D_ACAGTG.bam	SRR1767958	@dbgap@:reads/SRP011999/SRS835611/SRX849231/SRR1767958/SRR1767958.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKLL-09A-01D	DNA	EFO	SRS880459	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKLL-09A-01D IL10531 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL10531	SRX897003	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKLL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKLL-09A-01D IL10531 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKLL-09A-01D_CGGAAT.bam	SRR1825537	@dbgap@:reads/SRP011999/SRS880459/SRX897003/SRR1825537/SRR1825537.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKLL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKLL-14A-01D	DNA	EFO	SRS880473	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARKLL-14A-01D IL10532 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL10532	SRX896992	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARKLL-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARKLL-14A-01D IL10532 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARKLL-14A-01D_CTAGCT.bam	SRR1825538	@dbgap@:reads/SRP011999/SRS880473/SRX896992/SRR1825538/SRR1825538.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKZX-09A-01D	DNA	EFO	SRS1080823	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARKZX-09A-01D TARGET-10-PARKZX-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	154	51.4256	TARGET-10-PARKZX-09A-01_EXCAP_1	SRX1274449		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARKZX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARKZX-09A-01D TARGET-10-PARKZX-09A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002220_D1-TARGET-10-PARKZX-09A-01.bam	SRR2485600	@dbgap@:reads/SRP011999/SRS1080823/SRX1274449/SRR2485600/SRR2485600.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARKZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARKZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARKZX-10A-01D	DNA	EFO	SRS1080822	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARKZX-10A-01D TARGET-10-PARKZX-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	51.7402	TARGET-10-PARKZX-10A-01_EXCAP_1	SRX1274450		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARKZX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARKZX-10A-01D TARGET-10-PARKZX-10A-01_EXCAP_1 run	sequencing assay	EFO	161	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002220_G1-TARGET-10-PARKZX-10A-01.bam	SRR2485601	@dbgap@:reads/SRP011999/SRS1080822/SRX1274450/SRR2485601/SRR2485601.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLBP-09A-01D	DNA	EFO	SRS945076	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLBP-09A-01D IL12228 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL12228	SRX1037920	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLBP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLBP-09A-01D IL12228 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLBP-09A-01D_AGTCAA.bam	SRR2039522	@dbgap@:reads/SRP011999/SRS945076/SRX1037920/SRR2039522/SRR2039522.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLBP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLBP-14A-01D	DNA	EFO	SRS880505	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLBP-14A-01D IL10383 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10383	SRX896956	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLBP-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLBP-14A-01D IL10383 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLBP-14A-01D_CACCGG.bam	SRR1825407	@dbgap@:reads/SRP011999/SRS880505/SRX896956/SRR1825407/SRR1825407.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLDF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLDF-09A-01D	DNA	EFO	SRS880619	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLDF-09A-01D IL10902 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	26.2	IL10902	SRX896843	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLDF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLDF-09A-01D IL10902 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLDF-09A-01D_GTTTCG.bam	SRR1825612	@dbgap@:reads/SRP011999/SRS880619/SRX896843/SRR1825612/SRR1825612.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLDF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLDF-10A-01D	DNA	EFO	SRS880638	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLDF-10A-01D IL10903 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	26.4	IL10903	SRX896824	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLDF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLDF-10A-01D IL10903 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLDF-10A-01D_CGTACG.bam	SRR1825613	@dbgap@:reads/SRP011999/SRS880638/SRX896824/SRR1825613/SRR1825613.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLFI-09A-01D	DNA	EFO	SRS880490	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLFI-09A-01D IL10910 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	26.1	IL10910	SRX896975	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLFI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLFI-09A-01D IL10910 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLFI-09A-01D_CAACTA.bam	SRR1825614	@dbgap@:reads/SRP011999/SRS880490/SRX896975/SRR1825614/SRR1825614.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLFI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLFI-14A-01D	DNA	EFO	SRS880507	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLFI-14A-01D IL10911 library	PAIRED	GENOMIC	WXS	Hybrid Selection	169	26	IL10911	SRX896958	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLFI-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLFI-14A-01D IL10911 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLFI-14A-01D_CACCGG.bam	SRR1825615	@dbgap@:reads/SRP011999/SRS880507/SRX896958/SRR1825615/SRR1825615.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLHD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLHD-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLHD-04B-01D	DNA	EFO	SRS1124477	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLHD-04B-01D IL15665 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL15665	SRX1360699	P18r	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample SJTALL040261_R1-TARGET-10-PARLHD-04B-01 in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLHD-04B-01D IL15665 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	SJTALL040261_R1-TARGET-10-PARLHD-04B-01_CATGGC_L007.bam	SRR2747630	@dbgap@:reads/SRP011999/SRS1124477/SRX1360699/SRR2747630/SRR2747630.sra	2	HG19						
TARGET-10-PARLJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLJA-09A-01D	DNA	EFO	SRS835617	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLJA-09A-01D IL9082 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL9082	SRX849232	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLJA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLJA-09A-01D IL9082 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLJA-09A-01D_CTTGTA.bam	SRR1767959	@dbgap@:reads/SRP011999/SRS835617/SRX849232/SRR1767959/SRR1767959.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLJA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLJA-14A-01D	DNA	EFO	SRS835618	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLJA-14A-01D IL9083 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL9083	SRX849233	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLJA-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLJA-14A-01D IL9083 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLJA-14A-01D_AGTCAA.bam	SRR1767960	@dbgap@:reads/SRP011999/SRS835618/SRX849233/SRR1767960/SRR1767960.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLMI-09A-01D	DNA	EFO	SRS880627	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLMI-09A-01D IL10730 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10730	SRX896835	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLMI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLMI-09A-01D IL10730 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLMI-09A-01D_ACAGTG.bam	SRR1825616	@dbgap@:reads/SRP011999/SRS880627/SRX896835/SRR1825616/SRR1825616.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLMI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLMI-10A-01D	DNA	EFO	SRS880580	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLMI-10A-01D IL10731 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10731	SRX896883	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLMI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLMI-10A-01D IL10731 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLMI-10A-01D_GCCAAT.bam	SRR1825617	@dbgap@:reads/SRP011999/SRS880580/SRX896883/SRR1825617/SRR1825617.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLPA-09A-01D	DNA	EFO	SRS1080821	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARLPA-09A-01D TARGET-10-PARLPA-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	57.3604	TARGET-10-PARLPA-09A-01_EXCAP_1	SRX1274451		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARLPA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARLPA-09A-01D TARGET-10-PARLPA-09A-01_EXCAP_1 run	sequencing assay	EFO	178	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002223_D1-TARGET-10-PARLPA-09A-01.bam	SRR2485602	@dbgap@:reads/SRP011999/SRS1080821/SRX1274451/SRR2485602/SRR2485602.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLPA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLPA-10A-01D	DNA	EFO	SRS1080820	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARLPA-10A-01D TARGET-10-PARLPA-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	152	48.9478	TARGET-10-PARLPA-10A-01_EXCAP_1	SRX1274452		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARLPA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARLPA-10A-01D TARGET-10-PARLPA-10A-01_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002223_G1-TARGET-10-PARLPA-10A-01.bam	SRR2485603	@dbgap@:reads/SRP011999/SRS1080820/SRX1274452/SRR2485603/SRR2485603.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLPB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLPB-09A-01D	DNA	EFO	SRS880685	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLPB-09A-01D IL10396 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10396	SRX896778	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLPB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLPB-09A-01D IL10396 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLPB-09A-01D_TCATTC.bam	SRR1825408	@dbgap@:reads/SRP011999/SRS880685/SRX896778/SRR1825408/SRR1825408.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLPB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLPB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLPB-10A-01D	DNA	EFO	SRS880525	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLPB-10A-01D IL10397 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10397	SRX896938	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLPB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLPB-10A-01D IL10397 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLPB-10A-01D_TCCCGA.bam	SRR1825409	@dbgap@:reads/SRP011999/SRS880525/SRX896938/SRR1825409/SRR1825409.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLST-09A-01D	DNA	EFO	SRS1080819	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARLST-09A-01D SJTALL002019_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	163	62.9376	SJTALL002019_D1_EXCAP_1	SRX1274453		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARLST-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARLST-09A-01D SJTALL002019_D1_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002019_D1-TARGET-10-PARLST-09A-01.bam	SRR2485604	@dbgap@:reads/SRP011999/SRS1080819/SRX1274453/SRR2485604/SRR2485604.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLST-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLST-14A-01D	DNA	EFO	SRS1080818	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARLST-14A-01D SJTALL002019_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	148	47.1764	SJTALL002019_G1_EXCAP_1	SRX1274454		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARLST-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARLST-14A-01D SJTALL002019_G1_EXCAP_1 run	sequencing assay	EFO	166	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002019_G1-TARGET-10-PARLST-14A-01.bam	SRR2485605	@dbgap@:reads/SRP011999/SRS1080818/SRX1274454/SRR2485605/SRR2485605.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLSU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLSU-09A-01D	DNA	EFO	SRS890996	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLSU-09A-01D IL11301 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11301	SRX975994	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLSU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLSU-09A-01D IL11301 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLSU-09A-01D_CAGATC.bam	SRR1949467	@dbgap@:reads/SRP011999/SRS890996/SRX975994/SRR1949467/SRR1949467.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLSU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLSU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLSU-14A-01D	DNA	EFO	SRS890997	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLSU-14A-01D IL11302 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11302	SRX975993	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLSU-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLSU-14A-01D IL11302 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLSU-14A-01D_ACTTGA.bam	SRR1949468	@dbgap@:reads/SRP011999/SRS890997/SRX975993/SRR1949468/SRR1949468.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLTU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLTU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLTU-09A-01D	DNA	EFO	SRS1080817	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARLTU-09A-01D TARGET-10-PARLTU-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	78.8779	TARGET-10-PARLTU-09A-01_EXCAP_1	SRX1274455		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARLTU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARLTU-09A-01D TARGET-10-PARLTU-09A-01_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002229_D1-TARGET-10-PARLTU-09A-01.bam	SRR2485606	@dbgap@:reads/SRP011999/SRS1080817/SRX1274455/SRR2485606/SRR2485606.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLTU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLTU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLTU-14A-01D	DNA	EFO	SRS1080816	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARLTU-14A-01D TARGET-10-PARLTU-14A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	156	54.1452	TARGET-10-PARLTU-14A-01_EXCAP_1	SRX1274456		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARLTU-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARLTU-14A-01D TARGET-10-PARLTU-14A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002229_G1-TARGET-10-PARLTU-14A-01.bam	SRR2485607	@dbgap@:reads/SRP011999/SRS1080816/SRX1274456/SRR2485607/SRR2485607.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLTX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLTX-09A-01D	DNA	EFO	SRS880462	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLTX-09A-01D IL10539 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL10539	SRX897001	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLTX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLTX-09A-01D IL10539 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLTX-09A-01D_TCATTC.bam	SRR1825539	@dbgap@:reads/SRP011999/SRS880462/SRX897001/SRR1825539/SRR1825539.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARLTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARLTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLTX-10A-01D	DNA	EFO	SRS880491	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARLTX-10A-01D IL10540 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL10540	SRX896972	P7_B30	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARLTX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARLTX-10A-01D IL10540 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARLTX-10A-01D_TCCCGA.bam	SRR1825540	@dbgap@:reads/SRP011999/SRS880491/SRX896972/SRR1825540/SRR1825540.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMEG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMEG-09A-01D	DNA	EFO	SRS1080815	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARMEG-09A-01D TARGET-10-PARMEG-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	60.4204	TARGET-10-PARMEG-09A-01_EXCAP_1	SRX1274457		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARMEG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARMEG-09A-01D TARGET-10-PARMEG-09A-01_EXCAP_1 run	sequencing assay	EFO	164	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002234_D1-TARGET-10-PARMEG-09A-01.bam	SRR2485608	@dbgap@:reads/SRP011999/SRS1080815/SRX1274457/SRR2485608/SRR2485608.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMEG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMEG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMEG-10A-01D	DNA	EFO	SRS1080814	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARMEG-10A-01D TARGET-10-PARMEG-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	64.2656	TARGET-10-PARMEG-10A-01_EXCAP_1	SRX1274458		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARMEG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARMEG-10A-01D TARGET-10-PARMEG-10A-01_EXCAP_1 run	sequencing assay	EFO	183	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002234_G1-TARGET-10-PARMEG-10A-01.bam	SRR2485609	@dbgap@:reads/SRP011999/SRS1080814/SRX1274458/SRR2485609/SRR2485609.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMFF-09A-01D	DNA	EFO	SRS835613	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMFF-09A-01D IL9090 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9090	SRX849234	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMFF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMFF-09A-01D IL9090 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMFF-09A-01D_GTGGCC.bam	SRR1767961	@dbgap@:reads/SRP011999/SRS835613/SRX849234/SRR1767961/SRR1767961.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMFF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMFF-14A-01D	DNA	EFO	SRS835614	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMFF-14A-01D IL9091 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL9091	SRX849235	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMFF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMFF-14A-01D IL9091 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMFF-14A-01D_GTTTCG.bam	SRR1767962	@dbgap@:reads/SRP011999/SRS835614/SRX849235/SRR1767962/SRR1767962.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMIH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMIH-09A-01D	DNA	EFO	SRS835621	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMIH-09A-01D IL9098 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9098	SRX849236	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMIH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMIH-09A-01D IL9098 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMIH-09A-01D_CAAAAG.bam	SRR1767963	@dbgap@:reads/SRP011999/SRS835621/SRX849236/SRR1767963/SRR1767963.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMIH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMIH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMIH-14A-01D	DNA	EFO	SRS835615	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMIH-14A-01D IL9099 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9099	SRX849237	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMIH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMIH-14A-01D IL9099 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMIH-14A-01D_CAACTA.bam	SRR1767964	@dbgap@:reads/SRP011999/SRS835615/SRX849237/SRR1767964/SRR1767964.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMKK-09A-01D	DNA	EFO	SRS835645	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMKK-09A-01D IL9106 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9106	SRX849263	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMKK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMKK-09A-01D IL9106 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMKK-09A-01D_TGACCA.bam	SRR1767965	@dbgap@:reads/SRP011999/SRS835645/SRX849263/SRR1767965/SRR1767965.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMKK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMKK-14A-01D	DNA	EFO	SRS835644	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMKK-14A-01D IL9107 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9107	SRX849264	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMKK-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMKK-14A-01D IL9107 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMKK-14A-01D_ACAGTG.bam	SRR1767966	@dbgap@:reads/SRP011999/SRS835644/SRX849264/SRR1767966/SRR1767966.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMKM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMKM-03A-01D	DNA	EFO	SRS835643	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMKM-03A-01D IL9114 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9114	SRX849265	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMKM-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMKM-03A-01D IL9114 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMKM-03A-01D_CTTGTA.bam	SRR1767967	@dbgap@:reads/SRP011999/SRS835643/SRX849265/SRR1767967/SRR1767967.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMKM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMKM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMKM-14A-01D	DNA	EFO	SRS835646	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMKM-14A-01D IL9115 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL9115	SRX849266	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMKM-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMKM-14A-01D IL9115 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMKM-14A-01D_AGTCAA.bam	SRR1767968	@dbgap@:reads/SRP011999/SRS835646/SRX849266/SRR1767968/SRR1767968.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMMA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMMA-09A-01D	DNA	EFO	SRS945077	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMMA-09A-01D IL12237 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL12237	SRX1037919	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMMA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMMA-09A-01D IL12237 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMMA-09A-01D_CGTACG.bam	SRR2039523	@dbgap@:reads/SRP011999/SRS945077/SRX1037919/SRR2039523/SRR2039523.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMMA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMMA-10A-01D	DNA	EFO	SRS945078	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMMA-10A-01D IL12238 library	PAIRED	GENOMIC	WXS	Hybrid Selection	223	29.9	IL12238	SRX1037918	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMMA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMMA-10A-01D IL12238 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMMA-10A-01D_GAGTGG.bam	SRR2039524	@dbgap@:reads/SRP011999/SRS945078/SRX1037918/SRR2039524/SRR2039524.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMMV-09A-01D	DNA	EFO	SRS835647	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMMV-09A-01D IL9122 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9122	SRX849267	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMMV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMMV-09A-01D IL9122 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMMV-09A-01D_GTGGCC.bam	SRR1767969	@dbgap@:reads/SRP011999/SRS835647/SRX849267/SRR1767969/SRR1767969.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMMV-14A-01D	DNA	EFO	SRS835648	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMMV-14A-01D IL9123 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9123	SRX849268	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMMV-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMMV-14A-01D IL9123 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMMV-14A-01D_GTTTCG.bam	SRR1767970	@dbgap@:reads/SRP011999/SRS835648/SRX849268/SRR1767970/SRR1767970.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMRF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMRF-09A-01D	DNA	EFO	SRS835649	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMRF-09A-01D IL9130 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9130	SRX849269	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMRF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMRF-09A-01D IL9130 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMRF-09A-01D_CAAAAG.bam	SRR1768043	@dbgap@:reads/SRP011999/SRS835649/SRX849269/SRR1768043/SRR1768043.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMRF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMRF-14A-01D	DNA	EFO	SRS835651	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMRF-14A-01D IL9131 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9131	SRX849270	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMRF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMRF-14A-01D IL9131 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMRF-14A-01D_CAACTA.bam	SRR1767971	@dbgap@:reads/SRP011999/SRS835651/SRX849270/SRR1767971/SRR1767971.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMSB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSB-09A-01D	DNA	EFO	SRS880480	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMSB-09A-01D IL10618 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10618	SRX896983	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMSB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMSB-09A-01D IL10618 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMSB-09A-01D_ATGTCA.bam	SRR1825618	@dbgap@:reads/SRP011999/SRS880480/SRX896983/SRR1825618/SRR1825618.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMSB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMSB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSB-10A-01D	DNA	EFO	SRS880565	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMSB-10A-01D IL10619 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10619	SRX896898	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMSB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMSB-10A-01D IL10619 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMSB-10A-01D_CCGTCC.bam	SRR1825619	@dbgap@:reads/SRP011999/SRS880565/SRX896898/SRR1825619/SRR1825619.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARMSP-09A-01D TARGET-10-PARMSP-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	164	63.6624	TARGET-10-PARMSP-09A-01_EXCAP_1	SRX1274459		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARMSP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARMSP-09A-01D TARGET-10-PARMSP-09A-01_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002236_D1-TARGET-10-PARMSP-09A-01.bam	SRR2485610	@dbgap@:reads/SRP011999/SRS300981/SRX1274459/SRR2485610/SRR2485610.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARMSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-10A-01D	DNA	EFO	SRS1080813	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARMSP-10A-01D TARGET-10-PARMSP-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	58.4377	TARGET-10-PARMSP-10A-01_EXCAP_1	SRX1274460		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARMSP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARMSP-10A-01D TARGET-10-PARMSP-10A-01_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002236_G1-TARGET-10-PARMSP-10A-01.bam	SRR2485611	@dbgap@:reads/SRP011999/SRS1080813/SRX1274460/SRR2485611/SRR2485611.sra	2	GRCh37-lite						
TARGET-10-PARMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMUC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMUC-03A-01D	DNA	EFO	SRS835669	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMUC-03A-01D IL9158 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9158	SRX849289	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMUC-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMUC-03A-01D IL9158 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMUC-03A-01D_TGACCA.bam	SRR1767972	@dbgap@:reads/SRP011999/SRS835669/SRX849289/SRR1767972/SRR1767972.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMUC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMUC-14A-01D	DNA	EFO	SRS835670	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMUC-14A-01D IL9159 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9159	SRX849290	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMUC-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMUC-14A-01D IL9159 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMUC-14A-01D_ACAGTG.bam	SRR1767973	@dbgap@:reads/SRP011999/SRS835670/SRX849290/SRR1767973/SRR1767973.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMWH-09A-01D	DNA	EFO	SRS891020	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMWH-09A-01D IL11309 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11309	SRX975977	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMWH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMWH-09A-01D IL11309 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMWH-09A-01D_ATGTCA.bam	SRR1949469	@dbgap@:reads/SRP011999/SRS891020/SRX975977/SRR1949469/SRR1949469.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMWH-14A-01D	DNA	EFO	SRS891008	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMWH-14A-01D IL11310 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11310	SRX975988	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMWH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMWH-14A-01D IL11310 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMWH-14A-01D_CCGTCC.bam	SRR1949470	@dbgap@:reads/SRP011999/SRS891008/SRX975988/SRR1949470/SRR1949470.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMWZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMWZ-09A-01D	DNA	EFO	SRS880711	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMWZ-09A-01D IL10453 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10453	SRX896751	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMWZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMWZ-09A-01D IL10453 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMWZ-09A-01D_CAGATC.bam	SRR1825541	@dbgap@:reads/SRP011999/SRS880711/SRX896751/SRR1825541/SRR1825541.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMWZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMWZ-14A-01D	DNA	EFO	SRS880700	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMWZ-14A-01D IL10454 library	PAIRED	GENOMIC	WXS	Hybrid Selection	221	29.7	IL10454	SRX896762	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMWZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMWZ-14A-01D IL10454 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMWZ-14A-01D_ACTTGA.bam	SRR1825542	@dbgap@:reads/SRP011999/SRS880700/SRX896762/SRR1825542/SRR1825542.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMYP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMYP-09A-01D	DNA	EFO	SRS880532	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMYP-09A-01D IL10626 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	26.5	IL10626	SRX896931	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMYP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMYP-09A-01D IL10626 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMYP-09A-01D_GAGTGG.bam	SRR1825620	@dbgap@:reads/SRP011999/SRS880532/SRX896931/SRR1825620/SRR1825620.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARMYP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARMYP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMYP-10A-01D	DNA	EFO	SRS880605	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARMYP-10A-01D IL10627 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10627	SRX896857	P8_B32	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARMYP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARMYP-10A-01D IL10627 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARMYP-10A-01D_GGTAGC.bam	SRR1825621	@dbgap@:reads/SRP011999/SRS880605/SRX896857/SRR1825621/SRR1825621.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNAF-03A-01D	DNA	EFO	SRS1080812	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNAF-03A-01D TARGET-10-PARNAF-03A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	68.9993	TARGET-10-PARNAF-03A-01_EXCAP_1	SRX1274461		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNAF-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARNAF-03A-01D TARGET-10-PARNAF-03A-01_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002240_D1-TARGET-10-PARNAF-03A-01.bam	SRR2485612	@dbgap@:reads/SRP011999/SRS1080812/SRX1274461/SRR2485612/SRR2485612.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNAF-10A-01D	DNA	EFO	SRS1080810	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNAF-10A-01D TARGET-10-PARNAF-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	46.0493	TARGET-10-PARNAF-10A-01_EXCAP_1	SRX1274462		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNAF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARNAF-10A-01D TARGET-10-PARNAF-10A-01_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002240_G1-TARGET-10-PARNAF-10A-01.bam	SRR2485613	@dbgap@:reads/SRP011999/SRS1080810/SRX1274462/SRR2485613/SRR2485613.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNBN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNBN-09A-01D	DNA	EFO	SRS1080811	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNBN-09A-01D SJTALL002005_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	155	54.171	SJTALL002005_D1_EXCAP_1	SRX1274463		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNBN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARNBN-09A-01D SJTALL002005_D1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002005_D1-TARGET-10-PARNBN-09A-01.bam	SRR2485614	@dbgap@:reads/SRP011999/SRS1080811/SRX1274463/SRR2485614/SRR2485614.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNBN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNBN-10A-01D	DNA	EFO	SRS1080809	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNBN-10A-01D SJTALL002005_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	62.8736	SJTALL002005_G1_EXCAP_1	SRX1274464		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNBN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARNBN-10A-01D SJTALL002005_G1_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002005_G1-TARGET-10-PARNBN-10A-01.bam	SRR2485615	@dbgap@:reads/SRP011999/SRS1080809/SRX1274464/SRR2485615/SRR2485615.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNDB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNDB-09A-01D	DNA	EFO	SRS880523	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNDB-09A-01D IL10888 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	26.1	IL10888	SRX896940	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNDB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNDB-09A-01D IL10888 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNDB-09A-01D_CAGATC.bam	SRR1825622	@dbgap@:reads/SRP011999/SRS880523/SRX896940/SRR1825622/SRR1825622.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNDB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNDB-10A-01D	DNA	EFO	SRS880599	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNDB-10A-01D IL10889 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL10889	SRX896864	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNDB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNDB-10A-01D IL10889 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNDB-10A-01D_ACTTGA.bam	SRR1825623	@dbgap@:reads/SRP011999/SRS880599/SRX896864/SRR1825623/SRR1825623.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNDY-09A-01D	DNA	EFO	SRS1080808	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNDY-09A-01D TARGET-10-PARNDY-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	65.9207	TARGET-10-PARNDY-09A-01_EXCAP_1	SRX1274465		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNDY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARNDY-09A-01D TARGET-10-PARNDY-09A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001626_D1-TARGET-10-PARNDY-09A-01.bam	SRR2485616	@dbgap@:reads/SRP011999/SRS1080808/SRX1274465/SRR2485616/SRR2485616.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNDY-10A-01D	DNA	EFO	SRS1080807	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNDY-10A-01D TARGET-10-PARNDY-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	57.0604	TARGET-10-PARNDY-10A-01_EXCAP_1	SRX1274466		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNDY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARNDY-10A-01D TARGET-10-PARNDY-10A-01_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001626_G1-TARGET-10-PARNDY-10A-01.bam	SRR2485617	@dbgap@:reads/SRP011999/SRS1080807/SRX1274466/SRR2485617/SRR2485617.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNEH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNEH-09A-01D	DNA	EFO	SRS1080806	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNEH-09A-01D SJTALL002009_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	66.3378	SJTALL002009_D1_EXCAP_1	SRX1274467		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNEH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARNEH-09A-01D SJTALL002009_D1_EXCAP_1 run	sequencing assay	EFO	164	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002009_D1-TARGET-10-PARNEH-09A-01.bam	SRR2485618	@dbgap@:reads/SRP011999/SRS1080806/SRX1274467/SRR2485618/SRR2485618.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNEH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNEH-14A-01D	DNA	EFO	SRS1080805	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNEH-14A-01D SJTALL002009_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	54.7283	SJTALL002009_G1_EXCAP_1	SRX1274468		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNEH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARNEH-14A-01D SJTALL002009_G1_EXCAP_1 run	sequencing assay	EFO	181	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002009_G1-TARGET-10-PARNEH-14A-01.bam	SRR2485619	@dbgap@:reads/SRP011999/SRS1080805/SRX1274468/SRR2485619/SRR2485619.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNGI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNGI-09A-01D	DNA	EFO	SRS880514	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNGI-09A-01D IL10896 library	PAIRED	GENOMIC	WXS	Hybrid Selection	177	26.6	IL10896	SRX896949	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNGI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNGI-09A-01D IL10896 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNGI-09A-01D_ATGTCA.bam	SRR1825624	@dbgap@:reads/SRP011999/SRS880514/SRX896949/SRR1825624/SRR1825624.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNGI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNGI-10A-01D	DNA	EFO	SRS880633	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNGI-10A-01D IL10897 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10897	SRX896829	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNGI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNGI-10A-01D IL10897 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNGI-10A-01D_CCGTCC.bam	SRR1825625	@dbgap@:reads/SRP011999/SRS880633/SRX896829/SRR1825625/SRR1825625.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNIZ-09A-01D	DNA	EFO	SRS880589	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNIZ-09A-01D IL10404 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL10404	SRX896874	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNIZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNIZ-09A-01D IL10404 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNIZ-09A-01D_ACAGTG.bam	SRR1825410	@dbgap@:reads/SRP011999/SRS880589/SRX896874/SRR1825410/SRR1825410.sra	2	HG19						
TARGET-10-PARNIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNIZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNIZ-14A-01D	DNA	EFO	SRS880511	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNIZ-14A-01D IL10405 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10405	SRX896952	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNIZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNIZ-14A-01D IL10405 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNIZ-14A-01D_GCCAAT.bam	SRR1825411	@dbgap@:reads/SRP011999/SRS880511/SRX896952/SRR1825411/SRR1825411.sra	2	HG19						
TARGET-10-PARNJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNJB-09A-01D	DNA	EFO	SRS1080804	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNJB-09A-01D SJTALL170_E_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	84.0866	SJTALL170_E_EXCAP_1	SRX1274469		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNJB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PARNJB-09A-01D SJTALL170_E_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL170_E-TARGET-10-PARNJB-09A-01.bam	SRR2485620	@dbgap@:reads/SRP011999/SRS1080804/SRX1274469/SRR2485620/SRR2485620.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNJB-10A-01D	DNA	EFO	SRS1080803	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNJB-10A-01D SJTALL170_H_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	155	54.9252	SJTALL170_H_EXCAP_1	SRX1274470		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNJB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PARNJB-10A-01D SJTALL170_H_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL170_H-TARGET-10-PARNJB-10A-01.bam	SRR2485621	@dbgap@:reads/SRP011999/SRS1080803/SRX1274470/SRR2485621/SRR2485621.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNLW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNLW-09A-01D	DNA	EFO	SRS1080802	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNLW-09A-01D TARGET-10-PARNLW-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	66.2009	TARGET-10-PARNLW-09A-01_EXCAP_1	SRX1274471		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNLW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARNLW-09A-01D TARGET-10-PARNLW-09A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001628_D1-TARGET-10-PARNLW-09A-01.bam	SRR2485622	@dbgap@:reads/SRP011999/SRS1080802/SRX1274471/SRR2485622/SRR2485622.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNLW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNLW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNLW-10A-01D	DNA	EFO	SRS1080801	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARNLW-10A-01D TARGET-10-PARNLW-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	63.4611	TARGET-10-PARNLW-10A-01_EXCAP_1	SRX1274472		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARNLW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARNLW-10A-01D TARGET-10-PARNLW-10A-01_EXCAP_1 run	sequencing assay	EFO	182	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001628_G1-TARGET-10-PARNLW-10A-01.bam	SRR2485623	@dbgap@:reads/SRP011999/SRS1080801/SRX1274472/SRR2485623/SRR2485623.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMV-09A-01D	DNA	EFO	SRS835684	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNMV-09A-01D IL9166 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9166	SRX849304	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNMV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNMV-09A-01D IL9166 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNMV-09A-01D_CTTGTA.bam	SRR1767974	@dbgap@:reads/SRP011999/SRS835684/SRX849304/SRR1767974/SRR1767974.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMV-14A-01D	DNA	EFO	SRS835682	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNMV-14A-01D IL9167 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL9167	SRX849305	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNMV-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNMV-14A-01D IL9167 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNMV-14A-01D_AGTCAA.bam	SRR1767975	@dbgap@:reads/SRP011999/SRS835682/SRX849305/SRR1767975/SRR1767975.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSP-09A-01D	DNA	EFO	SRS835683	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNSP-09A-01D IL9174 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9174	SRX849306	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNSP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNSP-09A-01D IL9174 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNSP-09A-01D_GTGGCC.bam	SRR1767976	@dbgap@:reads/SRP011999/SRS835683/SRX849306/SRR1767976/SRR1767976.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSP-10A-01D	DNA	EFO	SRS835704	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNSP-10A-01D IL9175 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL9175	SRX849307	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNSP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNSP-10A-01D IL9175 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNSP-10A-01D_GTTTCG.bam	SRR1767977	@dbgap@:reads/SRP011999/SRS835704/SRX849307/SRR1767977/SRR1767977.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNSW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSW-09A-01D	DNA	EFO	SRS880656	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNSW-09A-01D IL10461 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10461	SRX896806	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNSW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNSW-09A-01D IL10461 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNSW-09A-01D_ATGTCA.bam	SRR1825543	@dbgap@:reads/SRP011999/SRS880656/SRX896806/SRR1825543/SRR1825543.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNSW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNSW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSW-10A-01D	DNA	EFO	SRS880533	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNSW-10A-01D IL10462 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10462	SRX896930	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNSW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNSW-10A-01D IL10462 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNSW-10A-01D_CCGTCC.bam	SRR1825544	@dbgap@:reads/SRP011999/SRS880533/SRX896930/SRR1825544/SRR1825544.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNXJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNXJ-09A-01D	DNA	EFO	SRS835685	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNXJ-09A-01D IL9182 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9182	SRX849308	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNXJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNXJ-09A-01D IL9182 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNXJ-09A-01D_CAAAAG.bam	SRR1767978	@dbgap@:reads/SRP011999/SRS835685/SRX849308/SRR1767978/SRR1767978.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARNXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARNXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNXJ-10A-01D	DNA	EFO	SRS835674	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARNXJ-10A-01D IL9183 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9183	SRX849295	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARNXJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARNXJ-10A-01D IL9183 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARNXJ-10A-01D_CAACTA.bam	SRR1767979	@dbgap@:reads/SRP011999/SRS835674/SRX849295/SRR1767979/SRR1767979.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPDP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPDP-09A-01D	DNA	EFO	SRS880626	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPDP-09A-01D IL10904 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	26.1	IL10904	SRX896837	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPDP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPDP-09A-01D IL10904 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPDP-09A-01D_GAGTGG.bam	SRR1825626	@dbgap@:reads/SRP011999/SRS880626/SRX896837/SRR1825626/SRR1825626.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPDP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPDP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPDP-10A-01D	DNA	EFO	SRS880681	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPDP-10A-01D IL10905 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10905	SRX896782	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPDP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPDP-10A-01D IL10905 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPDP-10A-01D_GGTAGC.bam	SRR1825627	@dbgap@:reads/SRP011999/SRS880681/SRX896782/SRR1825627/SRR1825627.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPET-09A-01D	DNA	EFO	SRS835619	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPET-09A-01D IL9076 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL9076	SRX849238	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPET-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPET-09A-01D IL9076 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPET-09A-01D_GCCAAT.bam	SRR1767980	@dbgap@:reads/SRP011999/SRS835619/SRX849238/SRR1767980/SRR1767980.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPET-10A-01D	DNA	EFO	SRS835620	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPET-10A-01D IL9077 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL9077	SRX849239	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPET-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPET-10A-01D IL9077 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPET-10A-01D_CAGATC.bam	SRR1767981	@dbgap@:reads/SRP011999/SRS835620/SRX849239/SRR1767981/SRR1767981.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPFF-09A-01D	DNA	EFO	SRS880678	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPFF-09A-01D IL10469 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10469	SRX896786	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPFF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPFF-09A-01D IL10469 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPFF-09A-01D_GAGTGG.bam	SRR1825545	@dbgap@:reads/SRP011999/SRS880678/SRX896786/SRR1825545/SRR1825545.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPFF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPFF-10A-01D	DNA	EFO	SRS880713	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPFF-10A-01D IL10470 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10470	SRX896749	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPFF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPFF-10A-01D IL10470 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPFF-10A-01D_GGTAGC.bam	SRR1825546	@dbgap@:reads/SRP011999/SRS880713/SRX896749/SRR1825546/SRR1825546.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPGJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPGJ-09A-01D	DNA	EFO	SRS880601	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPGJ-09A-01D IL10477 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	26.5	IL10477	SRX896863	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPGJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPGJ-09A-01D IL10477 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPGJ-09A-01D_CACGAT.bam	SRR1825547	@dbgap@:reads/SRP011999/SRS880601/SRX896863/SRR1825547/SRR1825547.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPGJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPGJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPGJ-10A-01D	DNA	EFO	SRS880640	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPGJ-10A-01D IL10478 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10478	SRX896822	P7_B28	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPGJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPGJ-10A-01D IL10478 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPGJ-10A-01D_CACTCA.bam	SRR1825548	@dbgap@:reads/SRP011999/SRS880640/SRX896822/SRR1825548/SRR1825548.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPGL-09A-01D	DNA	EFO	SRS880458	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPGL-09A-01D IL10912 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	26.1	IL10912	SRX897004	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPGL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPGL-09A-01D IL10912 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPGL-09A-01D_CACGAT.bam	SRR1825628	@dbgap@:reads/SRP011999/SRS880458/SRX897004/SRR1825628/SRR1825628.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPGL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPGL-10A-01D	DNA	EFO	SRS880470	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPGL-10A-01D IL10913 library	PAIRED	GENOMIC	WXS	Hybrid Selection	174	26.4	IL10913	SRX896994	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPGL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPGL-10A-01D IL10913 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPGL-10A-01D_CACTCA.bam	SRR1825629	@dbgap@:reads/SRP011999/SRS880470/SRX896994/SRR1825629/SRR1825629.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPGW-09A-01D	DNA	EFO	SRS880666	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPGW-09A-01D IL10485 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL10485	SRX896796	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPGW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPGW-09A-01D IL10485 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPGW-09A-01D_CTATAC.bam	SRR1825549	@dbgap@:reads/SRP011999/SRS880666/SRX896796/SRR1825549/SRR1825549.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPGW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPGW-10A-01D	DNA	EFO	SRS880679	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPGW-10A-01D IL10486 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL10486	SRX896784	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPGW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPGW-10A-01D IL10486 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPGW-10A-01D_CTCAGA.bam	SRR1825550	@dbgap@:reads/SRP011999/SRS880679/SRX896784/SRR1825550/SRR1825550.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPHB-09A-01D	DNA	EFO	SRS835622	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPHB-09A-01D IL9084 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9084	SRX849240	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPHB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPHB-09A-01D IL9084 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPHB-09A-01D_AGTTCC.bam	SRR1767982	@dbgap@:reads/SRP011999/SRS835622/SRX849240/SRR1767982/SRR1767982.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPHB-10A-01D	DNA	EFO	SRS835623	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPHB-10A-01D IL9085 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL9085	SRX849241	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPHB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPHB-10A-01D IL9085 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPHB-10A-01D_ATGTCA.bam	SRR1767983	@dbgap@:reads/SRP011999/SRS835623/SRX849241/SRR1767983/SRR1767983.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPIF-09A-01D	DNA	EFO	SRS1080800	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARPIF-09A-01D TARGET-10-PARPIF-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	65.7384	TARGET-10-PARPIF-09A-01_EXCAP_1	SRX1274473		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARPIF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARPIF-09A-01D TARGET-10-PARPIF-09A-01_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002224_D1-TARGET-10-PARPIF-09A-01.bam	SRR2485624	@dbgap@:reads/SRP011999/SRS1080800/SRX1274473/SRR2485624/SRR2485624.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPIF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPIF-10A-01D	DNA	EFO	SRS1080799	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARPIF-10A-01D TARGET-10-PARPIF-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	60.9323	TARGET-10-PARPIF-10A-01_EXCAP_1	SRX1274474		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARPIF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARPIF-10A-01D TARGET-10-PARPIF-10A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL002224_G1-TARGET-10-PARPIF-10A-01.bam	SRR2485625	@dbgap@:reads/SRP011999/SRS1080799/SRX1274474/SRR2485625/SRR2485625.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-03A-01D	DNA	EFO	SRS160248	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-03A-01D ING_ALLSRG.PARPNM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM03A-1_1pA	SRX089192		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-03A-01D ING_ALLSRG.PARPNM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_3.bam	SRR563945	@dbgap@:reads/SRP011999/SRS160248/SRX089192/SRR563945/SRR563945.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-03A-01D	DNA	EFO	SRS160248	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-03A-01D ING_ALLSRG.PARPNM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM03A-1_1pA	SRX089192		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-03A-01D ING_ALLSRG.PARPNM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_3.bam	SRR563945	@dbgap@:reads/SRP011999/SRS160248/SRX089192/SRR563945/SRR563945.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-03A-01D	DNA	EFO	SRS160248	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-03A-01D ING_ALLSRG.PARPNM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM03A-1_1pA	SRX089192		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-03A-01D ING_ALLSRG.PARPNM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_3.bam	SRR563945	@dbgap@:reads/SRP011999/SRS160248/SRX089192/SRR563945/SRR563945.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-03A-01D	DNA	EFO	SRS160248	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-03A-01D ING_ALLSRG.PARPNM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM03A-1_1pA	SRX089192		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-03A-01D ING_ALLSRG.PARPNM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_3.bam	SRR563945	@dbgap@:reads/SRP011999/SRS160248/SRX089192/SRR563945/SRR563945.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-04A-01D ING_ALLSRG.PARPNM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM04A-1_1pA	SRX089146		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-04A-01D ING_ALLSRG.PARPNM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_5.bam	SRR563586	@dbgap@:reads/SRP011999/SRS160249/SRX089146/SRR563586/SRR563586.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-04A-01D ING_ALLSRG.PARPNM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM04A-1_1pA	SRX089146		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-04A-01D ING_ALLSRG.PARPNM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_5.bam	SRR563586	@dbgap@:reads/SRP011999/SRS160249/SRX089146/SRR563586/SRR563586.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-04A-01D ING_ALLSRG.PARPNM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM04A-1_1pA	SRX089146		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-04A-01D ING_ALLSRG.PARPNM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_5.bam	SRR563586	@dbgap@:reads/SRP011999/SRS160249/SRX089146/SRR563586/SRR563586.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-04A-01D ING_ALLSRG.PARPNM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM04A-1_1pA	SRX089146		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-04A-01D ING_ALLSRG.PARPNM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_5.bam	SRR563586	@dbgap@:reads/SRP011999/SRS160249/SRX089146/SRR563586/SRR563586.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM10A-1_1pA	SRX089147		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_4.bam	SRR563587	@dbgap@:reads/SRP011999/SRS160250/SRX089147/SRR563587/SRR563587.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM10A-1_1pA	SRX089147		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_4.bam	SRR563587	@dbgap@:reads/SRP011999/SRS160250/SRX089147/SRR563587/SRR563587.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM10A-1_1pA	SRX089147		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_4.bam	SRR563587	@dbgap@:reads/SRP011999/SRS160250/SRX089147/SRR563587/SRR563587.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM10A-1_1pA	SRX089147		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_4.bam	SRR563587	@dbgap@:reads/SRP011999/SRS160250/SRX089147/SRR563587/SRR563587.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM10A-1_1pA	SRX089147		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_4.bam	SRR563587	@dbgap@:reads/SRP011999/SRS160250/SRX089147/SRR563587/SRR563587.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPNM10A-1_1pA	SRX089147		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPNM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPNM-10A-01D ING_ALLSRG.PARPNM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_4.bam	SRR563587	@dbgap@:reads/SRP011999/SRS160250/SRX089147/SRR563587/SRR563587.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARPPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPPV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPPV-09A-01D	DNA	EFO	SRS880592	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPPV-09A-01D IL10732 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10732	SRX896871	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPPV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPPV-09A-01D IL10732 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPPV-09A-01D_CAGATC.bam	SRR1825630	@dbgap@:reads/SRP011999/SRS880592/SRX896871/SRR1825630/SRR1825630.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPPV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPPV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPPV-10A-01D	DNA	EFO	SRS880642	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPPV-10A-01D IL10733 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10733	SRX896820	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPPV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPPV-10A-01D IL10733 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPPV-10A-01D_ACTTGA.bam	SRR1825631	@dbgap@:reads/SRP011999/SRS880642/SRX896820/SRR1825631/SRR1825631.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-03A-01D	DNA	EFO	SRS160251	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-03A-01D ING_ALLSRG.PARPRW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW03A-1_1pA	SRX089148		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-03A-01D ING_ALLSRG.PARPRW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_6.bam	SRR563590	@dbgap@:reads/SRP011999/SRS160251/SRX089148/SRR563590/SRR563590.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-03A-01D	DNA	EFO	SRS160251	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-03A-01D ING_ALLSRG.PARPRW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW03A-1_1pA	SRX089148		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-03A-01D ING_ALLSRG.PARPRW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_6.bam	SRR563590	@dbgap@:reads/SRP011999/SRS160251/SRX089148/SRR563590/SRR563590.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-03A-01D	DNA	EFO	SRS160251	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-03A-01D ING_ALLSRG.PARPRW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW03A-1_1pA	SRX089148		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-03A-01D ING_ALLSRG.PARPRW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_6.bam	SRR563590	@dbgap@:reads/SRP011999/SRS160251/SRX089148/SRR563590/SRR563590.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-03A-01D	DNA	EFO	SRS160251	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-03A-01D ING_ALLSRG.PARPRW03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW03A-1_1pA	SRX089148		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-03A-01D ING_ALLSRG.PARPRW03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_6.bam	SRR563590	@dbgap@:reads/SRP011999/SRS160251/SRX089148/SRR563590/SRR563590.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-04A-01D	DNA	EFO	SRS160252	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-04A-01D ING_ALLSRG.PARPRW04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW04A-1_1pA	SRX089149		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-04A-01D ING_ALLSRG.PARPRW04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_7.bam	SRR563588	@dbgap@:reads/SRP011999/SRS160252/SRX089149/SRR563588/SRR563588.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-04A-01D	DNA	EFO	SRS160252	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-04A-01D ING_ALLSRG.PARPRW04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW04A-1_1pA	SRX089149		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-04A-01D ING_ALLSRG.PARPRW04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_7.bam	SRR563588	@dbgap@:reads/SRP011999/SRS160252/SRX089149/SRR563588/SRR563588.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-04A-01D	DNA	EFO	SRS160252	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-04A-01D ING_ALLSRG.PARPRW04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW04A-1_1pA	SRX089149		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-04A-01D ING_ALLSRG.PARPRW04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_7.bam	SRR563588	@dbgap@:reads/SRP011999/SRS160252/SRX089149/SRR563588/SRR563588.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-04A-01D	DNA	EFO	SRS160252	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-04A-01D ING_ALLSRG.PARPRW04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW04A-1_1pA	SRX089149		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-04A-01D ING_ALLSRG.PARPRW04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_7.bam	SRR563588	@dbgap@:reads/SRP011999/SRS160252/SRX089149/SRR563588/SRR563588.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW10A-1_1pA	SRX089193		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_5.bam	SRR563589	@dbgap@:reads/SRP011999/SRS160253/SRX089193/SRR563589/SRR563589.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW10A-1_1pA	SRX089193		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_5.bam	SRR563589	@dbgap@:reads/SRP011999/SRS160253/SRX089193/SRR563589/SRR563589.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW10A-1_1pA	SRX089193		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_5.bam	SRR563589	@dbgap@:reads/SRP011999/SRS160253/SRX089193/SRR563589/SRR563589.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW10A-1_1pA	SRX089193		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_5.bam	SRR563589	@dbgap@:reads/SRP011999/SRS160253/SRX089193/SRR563589/SRR563589.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW10A-1_1pA	SRX089193		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_5.bam	SRR563589	@dbgap@:reads/SRP011999/SRS160253/SRX089193/SRR563589/SRR563589.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PARPRW10A-1_1pA	SRX089193		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PARPRW-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PARPRW-10A-01D ING_ALLSRG.PARPRW10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_5.bam	SRR563589	@dbgap@:reads/SRP011999/SRS160253/SRX089193/SRR563589/SRR563589.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PARPUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPUL-09A-01D	DNA	EFO	SRS890987	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPUL-09A-01D IL11319 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL11319	SRX976005	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPUL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPUL-09A-01D IL11319 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPUL-09A-01D_CAGATC.bam	SRR1949471	@dbgap@:reads/SRP011999/SRS890987/SRX976005/SRR1949471/SRR1949471.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPUL-10B	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPUL-10B-01D	DNA	EFO	SRS891007	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPUL-10B-01D IL11320 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11320	SRX975989	P11_B36	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPUL-10B-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPUL-10B-01D IL11320 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPUL-10B-01D_ACTTGA.bam	SRR1949472	@dbgap@:reads/SRP011999/SRS891007/SRX975989/SRR1949472/SRR1949472.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPXV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPXV-09A-01D	DNA	EFO	SRS880659	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPXV-09A-01D IL10740 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10740	SRX896805	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPXV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPXV-09A-01D IL10740 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPXV-09A-01D_ATGTCA.bam	SRR1825632	@dbgap@:reads/SRP011999/SRS880659/SRX896805/SRR1825632/SRR1825632.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPXV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPXV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPXV-10A-01D	DNA	EFO	SRS880696	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPXV-10A-01D IL10741 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10741	SRX896766	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPXV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPXV-10A-01D IL10741 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPXV-10A-01D_CCGTCC.bam	SRR1825633	@dbgap@:reads/SRP011999/SRS880696/SRX896766/SRR1825633/SRR1825633.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPYH-09A-01D	DNA	EFO	SRS891232	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPYH-09A-01D IL11570 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL11570	SRX975757	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPYH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPYH-09A-01D IL11570 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPYH-09A-01D_ATCACG.bam	SRR1949637	@dbgap@:reads/SRP011999/SRS891232/SRX975757/SRR1949637/SRR1949637.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPYH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPYH-14A-01D	DNA	EFO	SRS891240	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPYH-14A-01D IL11571 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL11571	SRX975753	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPYH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPYH-14A-01D IL11571 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPYH-14A-01D_CGATGT.bam	SRR1949638	@dbgap@:reads/SRP011999/SRS891240/SRX975753/SRR1949638/SRR1949638.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPYJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPYJ-09A-01D	DNA	EFO	SRS835624	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPYJ-09A-01D IL9092 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL9092	SRX849242	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPYJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPYJ-09A-01D IL9092 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPYJ-09A-01D_CGTACG.bam	SRR1767984	@dbgap@:reads/SRP011999/SRS835624/SRX849242/SRR1767984/SRR1767984.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPYJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPYJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPYJ-14A-01D	DNA	EFO	SRS835625	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPYJ-14A-01D IL9093 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9093	SRX849243	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPYJ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPYJ-14A-01D IL9093 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPYJ-14A-01D_GAGTGG.bam	SRR1767985	@dbgap@:reads/SRP011999/SRS835625/SRX849243/SRR1767985/SRR1767985.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPYS-09A-01D	DNA	EFO	SRS891223	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPYS-09A-01D IL11574 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11574	SRX975768	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPYS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPYS-09A-01D IL11574 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPYS-09A-01D_ACAGTG.bam	SRR1949639	@dbgap@:reads/SRP011999/SRS891223/SRX975768/SRR1949639/SRR1949639.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPYS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPYS-14A-01D	DNA	EFO	SRS891230	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPYS-14A-01D IL11575 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11575	SRX975761	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPYS-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPYS-14A-01D IL11575 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPYS-14A-01D_GCCAAT.bam	SRR1949640	@dbgap@:reads/SRP011999/SRS891230/SRX975761/SRR1949640/SRR1949640.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPZI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZI-09A-01D	DNA	EFO	SRS880504	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPZI-09A-01D IL10748 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10748	SRX896959	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPZI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPZI-09A-01D IL10748 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPZI-09A-01D_GAGTGG.bam	SRR1825634	@dbgap@:reads/SRP011999/SRS880504/SRX896959/SRR1825634/SRR1825634.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPZI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPZI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZI-10A-01D	DNA	EFO	SRS880541	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPZI-10A-01D IL10749 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL10749	SRX896922	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPZI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPZI-10A-01D IL10749 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPZI-10A-01D_GGTAGC.bam	SRR1825635	@dbgap@:reads/SRP011999/SRS880541/SRX896922/SRR1825635/SRR1825635.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPZR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZR-09A-01D	DNA	EFO	SRS880569	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPZR-09A-01D IL10756 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10756	SRX896895	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPZR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPZR-09A-01D IL10756 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPZR-09A-01D_CACGAT.bam	SRR1825636	@dbgap@:reads/SRP011999/SRS880569/SRX896895/SRR1825636/SRR1825636.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARPZR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARPZR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZR-10A-01D	DNA	EFO	SRS880518	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARPZR-10A-01D IL10757 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10757	SRX896945	P8_B34	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARPZR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARPZR-10A-01D IL10757 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARPZR-10A-01D_CACTCA.bam	SRR1825637	@dbgap@:reads/SRP011999/SRS880518/SRX896945/SRR1825637/SRR1825637.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRJV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRJV-09A-01D	DNA	EFO	SRS835976	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRJV-09A-01D IL9725 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL9725	SRX862552	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRJV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRJV-09A-01D IL9725 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRJV-09A-01D_ATCACG.bam	SRR1783517	@dbgap@:reads/SRP011999/SRS835976/SRX862552/SRR1783517/SRR1783517.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRJV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRJV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRJV-10A-01D	DNA	EFO	SRS835975	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRJV-10A-01D IL9726 library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	26.5	IL9726	SRX862553	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRJV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRJV-10A-01D IL9726 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRJV-10A-01D_CGATGT.bam	SRR1783518	@dbgap@:reads/SRP011999/SRS835975/SRX862553/SRR1783518/SRR1783518.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRKG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRKG-03A-01D	DNA	EFO	SRS880692	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRKG-03A-01D IL10493 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10493	SRX896769	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRKG-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRKG-03A-01D IL10493 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRKG-03A-01D_TCGAAG.bam	SRR1825551	@dbgap@:reads/SRP011999/SRS880692/SRX896769/SRR1825551/SRR1825551.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRKG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRKG-10A-01D	DNA	EFO	SRS880615	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRKG-10A-01D IL10494 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10494	SRX896848	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRKG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRKG-10A-01D IL10494 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRKG-10A-01D_TCGGCA.bam	SRR1825552	@dbgap@:reads/SRP011999/SRS880615/SRX896848/SRR1825552/SRR1825552.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRKK-09A-01D	DNA	EFO	SRS1080798	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARRKK-09A-01D SJTALL002036_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	53.8557	SJTALL002036_D1_EXCAP_1	SRX1274475		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARRKK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARRKK-09A-01D SJTALL002036_D1_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002036_D1-TARGET-10-PARRKK-09A-01.bam	SRR2485626	@dbgap@:reads/SRP011999/SRS1080798/SRX1274475/SRR2485626/SRR2485626.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRKK-10A-01D	DNA	EFO	SRS1080797	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARRKK-10A-01D SJTALL002036_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	78.6817	SJTALL002036_G1_EXCAP_1	SRX1274476		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARRKK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARRKK-10A-01D SJTALL002036_G1_EXCAP_1 run	sequencing assay	EFO	188	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002036_G1-TARGET-10-PARRKK-10A-01.bam	SRR2485627	@dbgap@:reads/SRP011999/SRS1080797/SRX1274476/SRR2485627/SRR2485627.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRMU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRMU-09A-01D	DNA	EFO	SRS835984	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRMU-09A-01D IL9733 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL9733	SRX862560	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRMU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRMU-09A-01D IL9733 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRMU-09A-01D_TAGCTT.bam	SRR1783519	@dbgap@:reads/SRP011999/SRS835984/SRX862560/SRR1783519/SRR1783519.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRMU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRMU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRMU-14A-01D	DNA	EFO	SRS835985	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRMU-14A-01D IL9734 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9734	SRX862561	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRMU-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRMU-14A-01D IL9734 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRMU-14A-01D_GGCTAC.bam	SRR1783520	@dbgap@:reads/SRP011999/SRS835985/SRX862561/SRR1783520/SRR1783520.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPA-09A-01D	DNA	EFO	SRS880631	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRPA-09A-01D IL10501 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10501	SRX896831	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRPA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRPA-09A-01D IL10501 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRPA-09A-01D_CAGATC.bam	SRR1825553	@dbgap@:reads/SRP011999/SRS880631/SRX896831/SRR1825553/SRR1825553.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPA-14A-01D	DNA	EFO	SRS880577	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRPA-14A-01D IL10502 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10502	SRX896886	P7_B29	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRPA-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRPA-14A-01D IL10502 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRPA-14A-01D_ACTTGA.bam	SRR1825554	@dbgap@:reads/SRP011999/SRS880577/SRX896886/SRR1825554/SRR1825554.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRSR-09A-01D	DNA	EFO	SRS835991	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRSR-09A-01D IL9741 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9741	SRX862567	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRSR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRSR-09A-01D IL9741 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRSR-09A-01D_GTCCGC.bam	SRR1783521	@dbgap@:reads/SRP011999/SRS835991/SRX862567/SRR1783521/SRR1783521.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRSR-10A-01D	DNA	EFO	SRS835993	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRSR-10A-01D IL9742 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9742	SRX862568	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRSR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRSR-10A-01D IL9742 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRSR-10A-01D_GTGAAA.bam	SRR1783522	@dbgap@:reads/SRP011999/SRS835993/SRX862568/SRR1783522/SRR1783522.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRVI-09A-01D	DNA	EFO	SRS1080796	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARRVI-09A-01D TARGET-10-PARRVI-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	67.2918	TARGET-10-PARRVI-09A-01_EXCAP_1	SRX1274477		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARRVI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARRVI-09A-01D TARGET-10-PARRVI-09A-01_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001608_D1-TARGET-10-PARRVI-09A-01.bam	SRR2485628	@dbgap@:reads/SRP011999/SRS1080796/SRX1274477/SRR2485628/SRR2485628.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRVI-10A-01D	DNA	EFO	SRS1080794	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARRVI-10A-01D TARGET-10-PARRVI-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	59.6039	TARGET-10-PARRVI-10A-01_EXCAP_1	SRX1274478		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARRVI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PARRVI-10A-01D TARGET-10-PARRVI-10A-01_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJBALL001608_G1-TARGET-10-PARRVI-10A-01.bam	SRR2485629	@dbgap@:reads/SRP011999/SRS1080794/SRX1274478/SRR2485629/SRR2485629.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRVK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRVK-09A-01D	DNA	EFO	SRS945084	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRVK-09A-01D IL12223 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL12223	SRX1037911	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRVK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRVK-09A-01D IL12223 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRVK-09A-01D_ACTTGA.bam	SRR2039525	@dbgap@:reads/SRP011999/SRS945084/SRX1037911/SRR2039525/SRR2039525.sra	2	HG19						
TARGET-10-PARRVK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRVK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRVK-10A-01D	DNA	EFO	SRS880625	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRVK-10A-01D IL10907 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10907	SRX896836	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRVK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRVK-10A-01D IL10907 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRVK-10A-01D_ATGAGC.bam	SRR1825638	@dbgap@:reads/SRP011999/SRS880625/SRX896836/SRR1825638/SRR1825638.sra	2	HG19						
TARGET-10-PARRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRYW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRYW-09A-01D	DNA	EFO	SRS880634	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRYW-09A-01D IL10898 library	PAIRED	GENOMIC	WXS	Hybrid Selection	177	26.6	IL10898	SRX896828	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRYW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRYW-09A-01D IL10898 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRYW-09A-01D_GTAGAG.bam	SRR1825639	@dbgap@:reads/SRP011999/SRS880634/SRX896828/SRR1825639/SRR1825639.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARRYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRYW-10A-01D	DNA	EFO	SRS880582	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARRYW-10A-01D IL10899 library	PAIRED	GENOMIC	WXS	Hybrid Selection	173	26.3	IL10899	SRX896881	P8_B33	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARRYW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARRYW-10A-01D IL10899 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARRYW-10A-01D_GTCCGC.bam	SRR1825640	@dbgap@:reads/SRP011999/SRS880582/SRX896881/SRR1825640/SRR1825640.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSET-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSET-09A-01D	DNA	EFO	SRS827131	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSET-09A-01D IL9100 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9100	SRX849244	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSET-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSET-09A-01D IL9100 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSET-09A-01D_CACCGG.bam	SRR1767986	@dbgap@:reads/SRP011999/SRS827131/SRX849244/SRR1767986/SRR1767986.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSET-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSET-10A-01D	DNA	EFO	SRS827111	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSET-10A-01D IL9101 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9101	SRX849245	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSET-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSET-10A-01D IL9101 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSET-10A-01D_CACGAT.bam	SRR1767987	@dbgap@:reads/SRP011999/SRS827111/SRX849245/SRR1767987/SRR1767987.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSGM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGM-09A-01D	DNA	EFO	SRS891051	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSGM-09A-01D IL11517 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11517	SRX975941	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSGM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSGM-09A-01D IL11517 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSGM-09A-01D_GGCTAC.bam	SRR1949487	@dbgap@:reads/SRP011999/SRS891051/SRX975941/SRR1949487/SRR1949487.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGM-10A-01D	DNA	EFO	SRS891041	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSGM-10A-01D IL11518 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL11518	SRX975954	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSGM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSGM-10A-01D IL11518 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSGM-10A-01D_CTTGTA.bam	SRR1949488	@dbgap@:reads/SRP011999/SRS891041/SRX975954/SRR1949488/SRR1949488.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSHV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSHV-09A-01D	DNA	EFO	SRS835592	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSHV-09A-01D IL8801 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL8801	SRX849211	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSHV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSHV-09A-01D IL8801 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSHV-09A-01D_CAAAAG.bam	SRR1767988	@dbgap@:reads/SRP011999/SRS835592/SRX849211/SRR1767988/SRR1767988.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSHV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSHV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSHV-10A-01D	DNA	EFO	SRS835594	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSHV-10A-01D IL8802 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL8802	SRX849212	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSHV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSHV-10A-01D IL8802 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSHV-10A-01D_CAACTA.bam	SRR1767989	@dbgap@:reads/SRP011999/SRS835594/SRX849212/SRR1767989/SRR1767989.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSJG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSJG-09A-01D	DNA	EFO	SRS835650	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSJG-09A-01D IL9108 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9108	SRX849271	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSJG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSJG-09A-01D IL9108 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSJG-09A-01D_GCCAAT.bam	SRR1767990	@dbgap@:reads/SRP011999/SRS835650/SRX849271/SRR1767990/SRR1767990.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSJG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSJG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSJG-10A-01D	DNA	EFO	SRS835652	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSJG-10A-01D IL9109 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL9109	SRX849272	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSJG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSJG-10A-01D IL9109 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSJG-10A-01D_CAGATC.bam	SRR1767991	@dbgap@:reads/SRP011999/SRS835652/SRX849272/SRR1767991/SRR1767991.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSJH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSJH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSJH-09A-01D	DNA	EFO	SRS891120	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSJH-09A-01D IL11525 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11525	SRX975876	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSJH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSJH-09A-01D IL11525 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSJH-09A-01D_GTGAAA.bam	SRR1949489	@dbgap@:reads/SRP011999/SRS891120/SRX975876/SRR1949489/SRR1949489.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSJH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSJH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSJH-14A-01D	DNA	EFO	SRS891118	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSJH-14A-01D IL11526 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11526	SRX975875	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSJH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSJH-14A-01D IL11526 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSJH-14A-01D_GTGGCC.bam	SRR1949490	@dbgap@:reads/SRP011999/SRS891118/SRX975875/SRR1949490/SRR1949490.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSKH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSKH-09A-01D	DNA	EFO	SRS891112	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSKH-09A-01D IL11533 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11533	SRX975883	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSKH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSKH-09A-01D IL11533 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSKH-09A-01D_ATTCCT.bam	SRR1949491	@dbgap@:reads/SRP011999/SRS891112/SRX975883/SRR1949491/SRR1949491.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSKH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSKH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSKH-10A-01D	DNA	EFO	SRS891115	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSKH-10A-01D IL11534 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11534	SRX975880	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSKH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSKH-10A-01D IL11534 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSKH-10A-01D_CAAAAG.bam	SRR1949492	@dbgap@:reads/SRP011999/SRS891115/SRX975880/SRR1949492/SRR1949492.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSKV-09A-01D	DNA	EFO	SRS891114	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSKV-09A-01D IL11541 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11541	SRX975881	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSKV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSKV-09A-01D IL11541 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSKV-09A-01D_CATTTT.bam	SRR1949493	@dbgap@:reads/SRP011999/SRS891114/SRX975881/SRR1949493/SRR1949493.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSKV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSKV-10A-01D	DNA	EFO	SRS891116	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSKV-10A-01D IL11542 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11542	SRX975879	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSKV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSKV-10A-01D IL11542 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSKV-10A-01D_CCAACA.bam	SRR1949494	@dbgap@:reads/SRP011999/SRS891116/SRX975879/SRR1949494/SRR1949494.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSKY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSKY-09A-01D	DNA	EFO	SRS891117	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSKY-09A-01D IL11549 library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	29.4	IL11549	SRX975878	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSKY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSKY-09A-01D IL11549 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSKY-09A-01D_TACAGC.bam	SRR1949495	@dbgap@:reads/SRP011999/SRS891117/SRX975878/SRR1949495/SRR1949495.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSKY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSKY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSKY-14A-01D	DNA	EFO	SRS891113	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSKY-14A-01D IL11550 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11550	SRX975882	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSKY-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSKY-14A-01D IL11550 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSKY-14A-01D_TATAAT.bam	SRR1949496	@dbgap@:reads/SRP011999/SRS891113/SRX975882/SRR1949496/SRR1949496.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSNX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSNX-09A-01D	DNA	EFO	SRS1080795	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARSNX-09A-01D SJTALL002048_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	75.5044	SJTALL002048_D1_EXCAP_1	SRX1274479		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARSNX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARSNX-09A-01D SJTALL002048_D1_EXCAP_1 run	sequencing assay	EFO	186	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002048_D1-TARGET-10-PARSNX-09A-01.bam	SRR2485630	@dbgap@:reads/SRP011999/SRS1080795/SRX1274479/SRR2485630/SRR2485630.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSNX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSNX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSNX-10A-01D	DNA	EFO	SRS1080793	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARSNX-10A-01D SJTALL002048_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	62.3827	SJTALL002048_G1_EXCAP_1	SRX1274480		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARSNX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARSNX-10A-01D SJTALL002048_G1_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002048_G1-TARGET-10-PARSNX-10A-01.bam	SRR2485631	@dbgap@:reads/SRP011999/SRS1080793/SRX1274480/SRR2485631/SRR2485631.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSRI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSRI-09A-01D	DNA	EFO	SRS891093	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSRI-09A-01D IL11463 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11463	SRX975904	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSRI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSRI-09A-01D IL11463 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSRI-09A-01D_ACAGTG.bam	SRR1949497	@dbgap@:reads/SRP011999/SRS891093/SRX975904/SRR1949497/SRR1949497.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSRI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSRI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSRI-10A-01D	DNA	EFO	SRS891107	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSRI-10A-01D IL11464 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL11464	SRX975888	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSRI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSRI-10A-01D IL11464 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSRI-10A-01D_GCCAAT.bam	SRR1949498	@dbgap@:reads/SRP011999/SRS891107/SRX975888/SRR1949498/SRR1949498.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSSV-09A-01D	DNA	EFO	SRS891074	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSSV-09A-01D IL11471 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11471	SRX975921	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSSV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSSV-09A-01D IL11471 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSSV-09A-01D_AGTCAA.bam	SRR1949499	@dbgap@:reads/SRP011999/SRS891074/SRX975921/SRR1949499/SRR1949499.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSSV-10A-01D	DNA	EFO	SRS891070	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSSV-10A-01D IL11472 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11472	SRX975925	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSSV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSSV-10A-01D IL11472 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSSV-10A-01D_AGTTCC.bam	SRR1949500	@dbgap@:reads/SRP011999/SRS891070/SRX975925/SRR1949500/SRR1949500.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSTB-09A-01D	DNA	EFO	SRS891048	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSTB-09A-01D IL11479 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11479	SRX975945	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSTB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSTB-09A-01D IL11479 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSTB-09A-01D_GTTTCG.bam	SRR1949501	@dbgap@:reads/SRP011999/SRS891048/SRX975945/SRR1949501/SRR1949501.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSTB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSTB-10A-01D	DNA	EFO	SRS891078	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSTB-10A-01D IL11480 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11480	SRX975918	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSTB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSTB-10A-01D IL11480 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSTB-10A-01D_CGTACG.bam	SRR1949502	@dbgap@:reads/SRP011999/SRS891078/SRX975918/SRR1949502/SRR1949502.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSUV-09A-01D	DNA	EFO	SRS891061	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSUV-09A-01D IL11487 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11487	SRX975935	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSUV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSUV-09A-01D IL11487 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSUV-09A-01D_CAACTA.bam	SRR1949503	@dbgap@:reads/SRP011999/SRS891061/SRX975935/SRR1949503/SRR1949503.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARSUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARSUV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSUV-14A-01D	DNA	EFO	SRS891076	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARSUV-14A-01D IL11488 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11488	SRX975919	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARSUV-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARSUV-14A-01D IL11488 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARSUV-14A-01D_CACCGG.bam	SRR1949504	@dbgap@:reads/SRP011999/SRS891076/SRX975919/SRR1949504/SRR1949504.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTAK-09A-01D	DNA	EFO	SRS891073	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTAK-09A-01D IL11495 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11495	SRX975922	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTAK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTAK-09A-01D IL11495 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTAK-09A-01D_CGGAAT.bam	SRR1949505	@dbgap@:reads/SRP011999/SRS891073/SRX975922/SRR1949505/SRR1949505.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTAK-10A-01D	DNA	EFO	SRS891094	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTAK-10A-01D IL11496 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL11496	SRX975902	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTAK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTAK-10A-01D IL11496 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTAK-10A-01D_CTAGCT.bam	SRR1949506	@dbgap@:reads/SRP011999/SRS891094/SRX975902/SRR1949506/SRR1949506.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTAY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTAY-09A-01D	DNA	EFO	SRS891077	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTAY-09A-01D IL11503 library	PAIRED	GENOMIC	WXS	Hybrid Selection	227	30.1	IL11503	SRX975917	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTAY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTAY-09A-01D IL11503 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTAY-09A-01D_TCATTC.bam	SRR1949507	@dbgap@:reads/SRP011999/SRS891077/SRX975917/SRR1949507/SRR1949507.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTAY-10A-01D	DNA	EFO	SRS891069	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTAY-10A-01D IL11504 library	PAIRED	GENOMIC	WXS	Hybrid Selection	219	29.6	IL11504	SRX975926	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTAY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTAY-10A-01D IL11504 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTAY-10A-01D_TCCCGA.bam	SRR1949508	@dbgap@:reads/SRP011999/SRS891069/SRX975926/SRR1949508/SRR1949508.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTBP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTBP-09A-01D	DNA	EFO	SRS835653	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTBP-09A-01D IL9116 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9116	SRX849273	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTBP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTBP-09A-01D IL9116 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTBP-09A-01D_AGTTCC.bam	SRR1767992	@dbgap@:reads/SRP011999/SRS835653/SRX849273/SRR1767992/SRR1767992.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTBP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTBP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTBP-10A-01D	DNA	EFO	SRS835654	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTBP-10A-01D IL9117 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9117	SRX849274	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTBP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTBP-10A-01D IL9117 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTBP-10A-01D_ATGTCA.bam	SRR1767993	@dbgap@:reads/SRP011999/SRS835654/SRX849274/SRR1767993/SRR1767993.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTEF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTEF-09A-01D	DNA	EFO	SRS891034	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTEF-09A-01D IL11511 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11511	SRX975961	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTEF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTEF-09A-01D IL11511 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTEF-09A-01D_ACAGTG.bam	SRR1949509	@dbgap@:reads/SRP011999/SRS891034/SRX975961/SRR1949509/SRR1949509.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTEF-10A-01D	DNA	EFO	SRS891037	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTEF-10A-01D IL11512 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11512	SRX975958	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTEF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTEF-10A-01D IL11512 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTEF-10A-01D_GCCAAT.bam	SRR1949510	@dbgap@:reads/SRP011999/SRS891037/SRX975958/SRR1949510/SRR1949510.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTGB-09A-01D	DNA	EFO	SRS891039	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTGB-09A-01D IL11519 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL11519	SRX975957	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTGB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTGB-09A-01D IL11519 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTGB-09A-01D_AGTCAA.bam	SRR1949511	@dbgap@:reads/SRP011999/SRS891039/SRX975957/SRR1949511/SRR1949511.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTGB-14A-01D	DNA	EFO	SRS891040	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTGB-14A-01D IL11520 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL11520	SRX975955	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTGB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTGB-14A-01D IL11520 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTGB-14A-01D_AGTTCC.bam	SRR1949512	@dbgap@:reads/SRP011999/SRS891040/SRX975955/SRR1949512/SRR1949512.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTGW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTGW-09A-01D	DNA	EFO	SRS891084	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTGW-09A-01D IL11527 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11527	SRX975911	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTGW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTGW-09A-01D IL11527 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTGW-09A-01D_GTTTCG.bam	SRR1949513	@dbgap@:reads/SRP011999/SRS891084/SRX975911/SRR1949513/SRR1949513.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTGW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTGW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTGW-10A-01D	DNA	EFO	SRS891101	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTGW-10A-01D IL11528 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11528	SRX975894	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTGW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTGW-10A-01D IL11528 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTGW-10A-01D_CGTACG.bam	SRR1949514	@dbgap@:reads/SRP011999/SRS891101/SRX975894/SRR1949514/SRR1949514.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTID-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTID-09A-01D	DNA	EFO	SRS891045	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTID-09A-01D IL11535 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11535	SRX975950	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTID-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTID-09A-01D IL11535 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTID-09A-01D_CAACTA.bam	SRR1949515	@dbgap@:reads/SRP011999/SRS891045/SRX975950/SRR1949515/SRR1949515.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTID-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTID-10A-01D	DNA	EFO	SRS891100	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTID-10A-01D IL11536 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL11536	SRX975895	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTID-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTID-10A-01D IL11536 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTID-10A-01D_CACCGG.bam	SRR1949516	@dbgap@:reads/SRP011999/SRS891100/SRX975895/SRR1949516/SRR1949516.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTIK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTIK-09A-01D	DNA	EFO	SRS891036	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTIK-09A-01D IL11543 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11543	SRX975959	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTIK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTIK-09A-01D IL11543 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTIK-09A-01D_CGGAAT.bam	SRR1949517	@dbgap@:reads/SRP011999/SRS891036/SRX975959/SRR1949517/SRR1949517.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTIK-10A-01D	DNA	EFO	SRS891063	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTIK-10A-01D IL11544 library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	29.5	IL11544	SRX975932	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTIK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTIK-10A-01D IL11544 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTIK-10A-01D_CTAGCT.bam	SRR1949518	@dbgap@:reads/SRP011999/SRS891063/SRX975932/SRR1949518/SRR1949518.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJJ-09A-01D	DNA	EFO	SRS891049	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTJJ-09A-01D IL11551 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11551	SRX975946	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTJJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTJJ-09A-01D IL11551 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTJJ-09A-01D_TCATTC.bam	SRR1949519	@dbgap@:reads/SRP011999/SRS891049/SRX975946/SRR1949519/SRR1949519.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTJJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJJ-10A-01D	DNA	EFO	SRS891075	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTJJ-10A-01D IL11552 library	PAIRED	GENOMIC	WXS	Hybrid Selection	220	29.7	IL11552	SRX975920	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTJJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTJJ-10A-01D IL11552 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTJJ-10A-01D_TCCCGA.bam	SRR1949520	@dbgap@:reads/SRP011999/SRS891075/SRX975920/SRR1949520/SRR1949520.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTLY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTLY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTLY-09A-01D	DNA	EFO	SRS1080792	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARTLY-09A-01D SJTALL171_D_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	62.7956	SJTALL171_D_EXCAP_1	SRX1274481		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARTLY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARTLY-09A-01D SJTALL171_D_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL171_D-PARTLY-D.bam	SRR2485632	@dbgap@:reads/SRP011999/SRS1080792/SRX1274481/SRR2485632/SRR2485632.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTLY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTLY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTLY-10A-01D	DNA	EFO	SRS1080791	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARTLY-10A-01D SJTALL171_G_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	68.5295	SJTALL171_G_EXCAP_1	SRX1274482		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARTLY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARTLY-10A-01D SJTALL171_G_EXCAP_1 run	sequencing assay	EFO	185	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL171_G-PARTLY-G.bam	SRR2485633	@dbgap@:reads/SRP011999/SRS1080791/SRX1274482/SRR2485633/SRR2485633.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTPW-09A-01D	DNA	EFO	SRS835655	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTPW-09A-01D IL9124 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9124	SRX849275	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTPW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTPW-09A-01D IL9124 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTPW-09A-01D_CGTACG.bam	SRR1767994	@dbgap@:reads/SRP011999/SRS835655/SRX849275/SRR1767994/SRR1767994.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTPW-10A-01D	DNA	EFO	SRS835656	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTPW-10A-01D IL9125 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9125	SRX849276	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTPW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTPW-10A-01D IL9125 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTPW-10A-01D_GAGTGG.bam	SRR1767995	@dbgap@:reads/SRP011999/SRS835656/SRX849276/SRR1767995/SRR1767995.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTSC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTSC-09A-01D	DNA	EFO	SRS891079	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTSC-09A-01D IL11465 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL11465	SRX975914	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTSC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTSC-09A-01D IL11465 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTSC-09A-01D_CAGATC.bam	SRR1949521	@dbgap@:reads/SRP011999/SRS891079/SRX975914/SRR1949521/SRR1949521.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTSC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTSC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTSC-10A-01D	DNA	EFO	SRS891111	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTSC-10A-01D IL11466 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL11466	SRX975884	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTSC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTSC-10A-01D IL11466 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTSC-10A-01D_ACTTGA.bam	SRR1949522	@dbgap@:reads/SRP011999/SRS891111/SRX975884/SRR1949522/SRR1949522.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTWH-09A-01D	DNA	EFO	SRS891092	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTWH-09A-01D IL11473 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL11473	SRX975905	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTWH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTWH-09A-01D IL11473 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTWH-09A-01D_ATGTCA.bam	SRR1949523	@dbgap@:reads/SRP011999/SRS891092/SRX975905/SRR1949523/SRR1949523.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTWH-10A-01D	DNA	EFO	SRS891108	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTWH-10A-01D IL11474 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11474	SRX975887	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTWH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTWH-10A-01D IL11474 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTWH-10A-01D_CCGTCC.bam	SRR1949524	@dbgap@:reads/SRP011999/SRS891108/SRX975887/SRR1949524/SRR1949524.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTZE-09A-01D	DNA	EFO	SRS891060	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTZE-09A-01D IL11481 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL11481	SRX975936	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTZE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTZE-09A-01D IL11481 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTZE-09A-01D_GAGTGG.bam	SRR1949525	@dbgap@:reads/SRP011999/SRS891060/SRX975936/SRR1949525/SRR1949525.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTZE-10A-01D	DNA	EFO	SRS891104	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTZE-10A-01D IL11482 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11482	SRX975891	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTZE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTZE-10A-01D IL11482 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTZE-10A-01D_GGTAGC.bam	SRR1949526	@dbgap@:reads/SRP011999/SRS891104/SRX975891/SRR1949526/SRR1949526.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTZJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTZJ-09A-01D	DNA	EFO	SRS891098	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTZJ-09A-01D IL11489 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11489	SRX975898	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTZJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTZJ-09A-01D IL11489 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTZJ-09A-01D_CACGAT.bam	SRR1949527	@dbgap@:reads/SRP011999/SRS891098/SRX975898/SRR1949527/SRR1949527.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARTZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARTZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTZJ-10A-01D	DNA	EFO	SRS891109	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARTZJ-10A-01D IL11490 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11490	SRX975886	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARTZJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARTZJ-10A-01D IL11490 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARTZJ-10A-01D_CACTCA.bam	SRR1949528	@dbgap@:reads/SRP011999/SRS891109/SRX975886/SRR1949528/SRR1949528.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUBN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBN-09A-01D	DNA	EFO	SRS891095	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUBN-09A-01D IL11497 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11497	SRX975901	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUBN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUBN-09A-01D IL11497 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUBN-09A-01D_CTATAC.bam	SRR1949529	@dbgap@:reads/SRP011999/SRS891095/SRX975901/SRR1949529/SRR1949529.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUBN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBN-10A-01D	DNA	EFO	SRS891106	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUBN-10A-01D IL11498 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11498	SRX975889	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUBN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUBN-10A-01D IL11498 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUBN-10A-01D_CTCAGA.bam	SRR1949530	@dbgap@:reads/SRP011999/SRS891106/SRX975889/SRR1949530/SRR1949530.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUBU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBU-09A-01D	DNA	EFO	SRS891059	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUBU-09A-01D IL11505 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11505	SRX975933	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUBU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUBU-09A-01D IL11505 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUBU-09A-01D_TCGAAG.bam	SRR1949531	@dbgap@:reads/SRP011999/SRS891059/SRX975933/SRR1949531/SRR1949531.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUBU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBU-14A-01D	DNA	EFO	SRS891105	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUBU-14A-01D IL11506 library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	29.8	IL11506	SRX975890	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUBU-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUBU-14A-01D IL11506 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUBU-14A-01D_TCGGCA.bam	SRR1949532	@dbgap@:reads/SRP011999/SRS891105/SRX975890/SRR1949532/SRR1949532.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBX-09A-01D	DNA	EFO	SRS891056	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUBX-09A-01D IL11513 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11513	SRX975939	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUBX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUBX-09A-01D IL11513 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUBX-09A-01D_CAGATC.bam	SRR1949533	@dbgap@:reads/SRP011999/SRS891056/SRX975939/SRR1949533/SRR1949533.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBX-10A-01D	DNA	EFO	SRS891080	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUBX-10A-01D IL11514 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11514	SRX975913	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUBX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUBX-10A-01D IL11514 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUBX-10A-01D_ACTTGA.bam	SRR1949534	@dbgap@:reads/SRP011999/SRS891080/SRX975913/SRR1949534/SRR1949534.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUCI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUCI-09A-01D	DNA	EFO	SRS891071	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUCI-09A-01D IL11521 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11521	SRX975924	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUCI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUCI-09A-01D IL11521 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUCI-09A-01D_ATGTCA.bam	SRR1949535	@dbgap@:reads/SRP011999/SRS891071/SRX975924/SRR1949535/SRR1949535.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUCI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUCI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUCI-10A-01D	DNA	EFO	SRS891089	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUCI-10A-01D IL11522 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11522	SRX975906	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUCI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUCI-10A-01D IL11522 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUCI-10A-01D_CCGTCC.bam	SRR1949536	@dbgap@:reads/SRP011999/SRS891089/SRX975906/SRR1949536/SRR1949536.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUCT-09A-01D	DNA	EFO	SRS891122	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUCT-09A-01D IL11529 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11529	SRX975873	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUCT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUCT-09A-01D IL11529 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUCT-09A-01D_GAGTGG.bam	SRR1949537	@dbgap@:reads/SRP011999/SRS891122/SRX975873/SRR1949537/SRR1949537.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUCT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUCT-10A-01D	DNA	EFO	SRS891125	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUCT-10A-01D IL11530 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11530	SRX975870	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUCT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUCT-10A-01D IL11530 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUCT-10A-01D_GGTAGC.bam	SRR1949538	@dbgap@:reads/SRP011999/SRS891125/SRX975870/SRR1949538/SRR1949538.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUEU-09A-01D	DNA	EFO	SRS835657	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUEU-09A-01D IL9132 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL9132	SRX849277	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUEU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUEU-09A-01D IL9132 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUEU-09A-01D_CACCGG.bam	SRR1767996	@dbgap@:reads/SRP011999/SRS835657/SRX849277/SRR1767996/SRR1767996.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUEU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUEU-10A-01D	DNA	EFO	SRS835658	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUEU-10A-01D IL9133 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9133	SRX849278	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUEU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUEU-10A-01D IL9133 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUEU-10A-01D_CACGAT.bam	SRR1767997	@dbgap@:reads/SRP011999/SRS835658/SRX849278/SRR1767997/SRR1767997.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUGV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGV-09A-01D	DNA	EFO	SRS891119	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUGV-09A-01D IL11545 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11545	SRX975877	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUGV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUGV-09A-01D IL11545 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUGV-09A-01D_CTATAC.bam	SRR1949539	@dbgap@:reads/SRP011999/SRS891119/SRX975877/SRR1949539/SRR1949539.sra	2	HG19						
TARGET-10-PARUGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUGV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGV-10A-01D	DNA	EFO	SRS891123	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUGV-10A-01D IL11546 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL11546	SRX975872	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUGV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUGV-10A-01D IL11546 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUGV-10A-01D_CTCAGA.bam	SRR1949540	@dbgap@:reads/SRP011999/SRS891123/SRX975872/SRR1949540/SRR1949540.sra	2	HG19						
TARGET-10-PARUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUIT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIT-09A-01D	DNA	EFO	SRS891121	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUIT-09A-01D IL11553 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11553	SRX975874	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUIT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUIT-09A-01D IL11553 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUIT-09A-01D_TCGAAG.bam	SRR1949541	@dbgap@:reads/SRP011999/SRS891121/SRX975874/SRR1949541/SRR1949541.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUIT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIT-10A-01D	DNA	EFO	SRS891124	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUIT-10A-01D IL11554 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11554	SRX975871	P14_B37	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUIT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUIT-10A-01D IL11554 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUIT-10A-01D_TCGGCA.bam	SRR1949542	@dbgap@:reads/SRP011999/SRS891124/SRX975871/SRR1949542/SRR1949542.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUKK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUKK-09A-01D	DNA	EFO	SRS835602	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUKK-09A-01D IL8783 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8783	SRX849223	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUKK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUKK-09A-01D IL8783 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUKK-09A-01D_TAGCTT.bam	SRR1767998	@dbgap@:reads/SRP011999/SRS835602/SRX849223/SRR1767998/SRR1767998.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUKK-10A-01D	DNA	EFO	SRS835601	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUKK-10A-01D IL8784 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL8784	SRX849216	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUKK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUKK-10A-01D IL8784 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUKK-10A-01D_GGCTAC.bam	SRR1767999	@dbgap@:reads/SRP011999/SRS835601/SRX849216/SRR1767999/SRR1767999.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUKW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUKW-09A-01D	DNA	EFO	SRS835671	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUKW-09A-01D IL9160 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9160	SRX849291	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUKW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUKW-09A-01D IL9160 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUKW-09A-01D_GCCAAT.bam	SRR1768000	@dbgap@:reads/SRP011999/SRS835671/SRX849291/SRR1768000/SRR1768000.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUKW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUKW-10A-01D	DNA	EFO	SRS835672	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUKW-10A-01D IL9161 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9161	SRX849292	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUKW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUKW-10A-01D IL9161 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUKW-10A-01D_CAGATC.bam	SRR1768001	@dbgap@:reads/SRP011999/SRS835672/SRX849292/SRR1768001/SRR1768001.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARURK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARURK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARURK-09A-01D	DNA	EFO	SRS835599	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARURK-09A-01D IL8785 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL8785	SRX849215	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARURK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARURK-09A-01D IL8785 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARURK-09A-01D_CTTGTA.bam	SRR1768002	@dbgap@:reads/SRP011999/SRS835599/SRX849215/SRR1768002/SRR1768002.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARURK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARURK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARURK-14A-01D	DNA	EFO	SRS835589	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARURK-14A-01D IL8786 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL8786	SRX849207	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARURK-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARURK-14A-01D IL8786 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARURK-14A-01D_AGTCAA.bam	SRR1768003	@dbgap@:reads/SRP011999/SRS835589/SRX849207/SRR1768003/SRR1768003.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUYE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUYE-03A-01D	DNA	EFO	SRS835556	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUYE-03A-01D IL8787 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL8787	SRX849208	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUYE-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUYE-03A-01D IL8787 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUYE-03A-01D_AGTTCC.bam	SRR1768004	@dbgap@:reads/SRP011999/SRS835556/SRX849208/SRR1768004/SRR1768004.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUYE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUYE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUYE-10A-01D	DNA	EFO	SRS891229	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUYE-10A-01D IL11612 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11612	SRX975845	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUYE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUYE-10A-01D IL11612 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUYE-10A-01D_TACAGC.bam	SRR1949641	@dbgap@:reads/SRP011999/SRS891229/SRX975845/SRR1949641/SRR1949641.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUYH-09A-01D	DNA	EFO	SRS835598	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUYH-09A-01D IL8789 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL8789	SRX849213	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUYH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUYH-09A-01D IL8789 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUYH-09A-01D_CCGTCC.bam	SRR1768005	@dbgap@:reads/SRP011999/SRS835598/SRX849213/SRR1768005/SRR1768005.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARUYH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUYH-14A-01D	DNA	EFO	SRS835597	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUYH-14A-01D IL8790 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8790	SRX849218	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUYH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUYH-14A-01D IL8790 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUYH-14A-01D_GTAGAG.bam	SRR1768006	@dbgap@:reads/SRP011999/SRS835597/SRX849218/SRR1768006/SRR1768006.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUYU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUYU-09A-01D	DNA	EFO	SRS835603	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUYU-09A-01D IL8791 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL8791	SRX849219	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUYU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUYU-09A-01D IL8791 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUYU-09A-01D_GTCCGC.bam	SRR1768007	@dbgap@:reads/SRP011999/SRS835603/SRX849219/SRR1768007/SRR1768007.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARUYU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PARUYU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUYU-10A-01D	DNA	EFO	SRS835604	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARUYU-10A-01D IL8792 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL8792	SRX849220	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARUYU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARUYU-10A-01D IL8792 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARUYU-10A-01D_GTGAAA.bam	SRR1768008	@dbgap@:reads/SRP011999/SRS835604/SRX849220/SRR1768008/SRR1768008.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVAK-09A-01D	DNA	EFO	SRS835600	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVAK-09A-01D IL8793 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8793	SRX849221	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVAK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVAK-09A-01D IL8793 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVAK-09A-01D_GTGGCC.bam	SRR1768009	@dbgap@:reads/SRP011999/SRS835600/SRX849221/SRR1768009/SRR1768009.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVAK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVAK-14A-01D	DNA	EFO	SRS835605	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVAK-14A-01D IL8794 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL8794	SRX849222	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVAK-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVAK-14A-01D IL8794 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVAK-14A-01D_GTTTCG.bam	SRR1768010	@dbgap@:reads/SRP011999/SRS835605/SRX849222/SRR1768010/SRR1768010.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVBL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBL-09A-01D	DNA	EFO	SRS835593	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVBL-09A-01D IL8795 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL8795	SRX849214	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVBL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVBL-09A-01D IL8795 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVBL-09A-01D_CGTACG.bam	SRR1768011	@dbgap@:reads/SRP011999/SRS835593/SRX849214/SRR1768011/SRR1768011.sra	2	HG19						
TARGET-10-PARVBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVBY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBY-09A-01D	DNA	EFO	SRS835596	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVBY-09A-01D IL8797 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL8797	SRX849217	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVBY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVBY-09A-01D IL8797 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVBY-09A-01D_GGTAGC.bam	SRR1768012	@dbgap@:reads/SRP011999/SRS835596/SRX849217/SRR1768012/SRR1768012.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVBY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBY-10A-01D	DNA	EFO	SRS835587	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVBY-10A-01D IL8798 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL8798	SRX849206	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVBY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVBY-10A-01D IL8798 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVBY-10A-01D_ACTGAT.bam	SRR1768013	@dbgap@:reads/SRP011999/SRS835587/SRX849206/SRR1768013/SRR1768013.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVCG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVCG-09A-01D	DNA	EFO	SRS835595	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVCG-09A-01D IL8799 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL8799	SRX849209	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVCG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVCG-09A-01D IL8799 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVCG-09A-01D_ATGAGC.bam	SRR1768014	@dbgap@:reads/SRP011999/SRS835595/SRX849209/SRR1768014/SRR1768014.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVCG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVCG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVCG-10A-01D	DNA	EFO	SRS835591	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVCG-10A-01D IL8800 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL8800	SRX849210	P15_B7	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVCG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVCG-10A-01D IL8800 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVCG-10A-01D_ATTCCT.bam	SRR1768015	@dbgap@:reads/SRP011999/SRS835591/SRX849210/SRR1768015/SRR1768015.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVEI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVEI-09A-01D	DNA	EFO	SRS835686	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVEI-09A-01D IL9168 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9168	SRX849309	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVEI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVEI-09A-01D IL9168 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVEI-09A-01D_AGTTCC.bam	SRR1768016	@dbgap@:reads/SRP011999/SRS835686/SRX849309/SRR1768016/SRR1768016.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVEI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVEI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVEI-10A-01D	DNA	EFO	SRS835687	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVEI-10A-01D IL9169 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9169	SRX849310	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVEI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVEI-10A-01D IL9169 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVEI-10A-01D_ATGTCA.bam	SRR1768017	@dbgap@:reads/SRP011999/SRS835687/SRX849310/SRR1768017/SRR1768017.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVHY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVHY-09A-01D	DNA	EFO	SRS1080790	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARVHY-09A-01D SJTALL002030_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	58.107	SJTALL002030_D1_EXCAP_1	SRX1274483		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARVHY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARVHY-09A-01D SJTALL002030_D1_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002030_D1-TARGET-10-PARVHY-09A-01.bam	SRR2485634	@dbgap@:reads/SRP011999/SRS1080790/SRX1274483/SRR2485634/SRR2485634.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVHY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVHY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVHY-10A-01D	DNA	EFO	SRS1080789	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARVHY-10A-01D SJTALL002030_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	146	42.5754	SJTALL002030_G1_EXCAP_1	SRX1274484		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARVHY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARVHY-10A-01D SJTALL002030_G1_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002030_G1-TARGET-10-PARVHY-10A-01.bam	SRR2485635	@dbgap@:reads/SRP011999/SRS1080789/SRX1274484/SRR2485635/SRR2485635.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVMR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVMR-09A-01D	DNA	EFO	SRS891241	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVMR-09A-01D IL11578 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11578	SRX975754	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVMR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVMR-09A-01D IL11578 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVMR-09A-01D_GATCAG.bam	SRR1949642	@dbgap@:reads/SRP011999/SRS891241/SRX975754/SRR1949642/SRR1949642.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARVMR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARVMR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVMR-14A-01D	DNA	EFO	SRS890928	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARVMR-14A-01D IL11579 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL11579	SRX975769	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARVMR-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARVMR-14A-01D IL11579 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARVMR-14A-01D_TAGCTT.bam	SRR1949643	@dbgap@:reads/SRP011999/SRS890928/SRX975769/SRR1949643/SRR1949643.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWDM-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWDM-09B-01D	DNA	EFO	SRS891204	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARWDM-09B-01D IL11580 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11580	SRX975788	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARWDM-09B-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARWDM-09B-01D IL11580 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARWDM-09B-01D_GGCTAC.bam	SRR1949644	@dbgap@:reads/SRP011999/SRS891204/SRX975788/SRR1949644/SRR1949644.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWDM-10B	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWDM-10B-01D	DNA	EFO	SRS891197	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARWDM-10B-01D IL11581 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11581	SRX975794	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARWDM-10B-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARWDM-10B-01D IL11581 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARWDM-10B-01D_CTTGTA.bam	SRR1949645	@dbgap@:reads/SRP011999/SRS891197/SRX975794/SRR1949645/SRR1949645.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWID-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWID-09A-01D	DNA	EFO	SRS835688	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARWID-09A-01D IL9176 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9176	SRX849311	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARWID-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARWID-09A-01D IL9176 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARWID-09A-01D_CGTACG.bam	SRR1768018	@dbgap@:reads/SRP011999/SRS835688/SRX849311/SRR1768018/SRR1768018.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWID	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWID-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWID-10A-01D	DNA	EFO	SRS835689	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARWID-10A-01D IL9177 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9177	SRX849312	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARWID-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARWID-10A-01D IL9177 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARWID-10A-01D_GAGTGG.bam	SRR1768019	@dbgap@:reads/SRP011999/SRS835689/SRX849312/SRR1768019/SRR1768019.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWLP-09A-01D	DNA	EFO	SRS835675	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARWLP-09A-01D IL9184 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9184	SRX849296	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARWLP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARWLP-09A-01D IL9184 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARWLP-09A-01D_CACCGG.bam	SRR1768020	@dbgap@:reads/SRP011999/SRS835675/SRX849296/SRR1768020/SRR1768020.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWLP-10A-01D	DNA	EFO	SRS835677	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARWLP-10A-01D IL9185 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9185	SRX849297	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARWLP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARWLP-10A-01D IL9185 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARWLP-10A-01D_CACGAT.bam	SRR1768021	@dbgap@:reads/SRP011999/SRS835677/SRX849297/SRR1768021/SRR1768021.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWMF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWMF-09A-01D	DNA	EFO	SRS835630	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARWMF-09A-01D IL9078 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL9078	SRX849246	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARWMF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARWMF-09A-01D IL9078 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARWMF-09A-01D_ACTTGA.bam	SRR1768022	@dbgap@:reads/SRP011999/SRS835630/SRX849246/SRR1768022/SRR1768022.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWMF-10A-01D	DNA	EFO	SRS835626	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARWMF-10A-01D IL9079 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9079	SRX849247	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARWMF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARWMF-10A-01D IL9079 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARWMF-10A-01D_GATCAG.bam	SRR1768023	@dbgap@:reads/SRP011999/SRS835626/SRX849247/SRR1768023/SRR1768023.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWNW-09A-01D	DNA	EFO	SRS1080788	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARWNW-09A-01D SJTALL002045_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	63.2688	SJTALL002045_D1_EXCAP_1	SRX1274485		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARWNW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARWNW-09A-01D SJTALL002045_D1_EXCAP_1 run	sequencing assay	EFO	181	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002045_D1-TARGET-10-PARWNW-09A-01.bam	SRR2485636	@dbgap@:reads/SRP011999/SRS1080788/SRX1274485/SRR2485636/SRR2485636.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARWNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARWNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWNW-10A-01D	DNA	EFO	SRS1080787	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARWNW-10A-01D SJTALL002045_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	76.1391	SJTALL002045_G1_EXCAP_1	SRX1274486		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARWNW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARWNW-10A-01D SJTALL002045_G1_EXCAP_1 run	sequencing assay	EFO	188	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002045_G1-TARGET-10-PARWNW-10A-01.bam	SRR2485637	@dbgap@:reads/SRP011999/SRS1080787/SRX1274486/SRR2485637/SRR2485637.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXHT-03A-01D	DNA	EFO	SRS1080786	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARXHT-03A-01D SJTALL002049_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	69.0425	SJTALL002049_D1_EXCAP_1	SRX1274487		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARXHT-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARXHT-03A-01D SJTALL002049_D1_EXCAP_1 run	sequencing assay	EFO	183	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002049_D1-TARGET-10-PARXHT-03A-01.bam	SRR2485638	@dbgap@:reads/SRP011999/SRS1080786/SRX1274487/SRR2485638/SRR2485638.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARXHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXHT-10A-01D	DNA	EFO	SRS1080785	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARXHT-10A-01D SJTALL002049_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	77.0177	SJTALL002049_G1_EXCAP_1	SRX1274488		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARXHT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARXHT-10A-01D SJTALL002049_G1_EXCAP_1 run	sequencing assay	EFO	186	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002049_G1-TARGET-10-PARXHT-10A-01.bam	SRR2485639	@dbgap@:reads/SRP011999/SRS1080785/SRX1274488/SRR2485639/SRR2485639.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARXLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXLS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXLS-09A-01D	DNA	EFO	SRS835631	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARXLS-09A-01D IL9086 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9086	SRX849248	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARXLS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARXLS-09A-01D IL9086 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARXLS-09A-01D_CCGTCC.bam	SRR1768024	@dbgap@:reads/SRP011999/SRS835631/SRX849248/SRR1768024/SRR1768024.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARXLS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXLS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXLS-14A-01D	DNA	EFO	SRS835627	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARXLS-14A-01D IL9087 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9087	SRX849249	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARXLS-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARXLS-14A-01D IL9087 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARXLS-14A-01D_GTAGAG.bam	SRR1768025	@dbgap@:reads/SRP011999/SRS835627/SRX849249/SRR1768025/SRR1768025.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARXMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXMV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMV-03A-01D	DNA	EFO	SRS835628	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARXMV-03A-01D IL9094 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9094	SRX849250	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARXMV-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARXMV-03A-01D IL9094 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARXMV-03A-01D_GGTAGC.bam	SRR1768026	@dbgap@:reads/SRP011999/SRS835628/SRX849250/SRR1768026/SRR1768026.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARXMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXMV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMV-10A-01D	DNA	EFO	SRS835629	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARXMV-10A-01D IL9095 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL9095	SRX849251	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARXMV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARXMV-10A-01D IL9095 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARXMV-10A-01D_ACTGAT.bam	SRR1768027	@dbgap@:reads/SRP011999/SRS835629/SRX849251/SRR1768027/SRR1768027.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARXVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXVS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXVS-09A-01D	DNA	EFO	SRS1080783	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARXVS-09A-01D SJTALL002060_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	73.4314	SJTALL002060_D1_EXCAP_1	SRX1274489		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARXVS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARXVS-09A-01D SJTALL002060_D1_EXCAP_1 run	sequencing assay	EFO	186	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002060_D1-TARGET-10-PARXVS-09A-01.bam	SRR2485640	@dbgap@:reads/SRP011999/SRS1080783/SRX1274489/SRR2485640/SRR2485640.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARXVS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARXVS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXVS-10A-01D	DNA	EFO	SRS1080784	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PARXVS-10A-01D SJTALL002060_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	64.7417	SJTALL002060_G1_EXCAP_1	SRX1274490		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PARXVS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PARXVS-10A-01D SJTALL002060_G1_EXCAP_1 run	sequencing assay	EFO	181	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002060_G1-TARGET-10-PARXVS-10A-01.bam	SRR2485641	@dbgap@:reads/SRP011999/SRS1080784/SRX1274490/SRR2485641/SRR2485641.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARYGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARYGI-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYGI-03A-01D	DNA	EFO	SRS835632	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARYGI-03A-01D IL9102 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9102	SRX849252	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARYGI-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARYGI-03A-01D IL9102 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARYGI-03A-01D_CACTCA.bam	SRR1768028	@dbgap@:reads/SRP011999/SRS835632/SRX849252/SRR1768028/SRR1768028.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARYGI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARYGI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYGI-10A-01D	DNA	EFO	SRS835633	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARYGI-10A-01D IL9103 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9103	SRX849253	P4_B11	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PARYGI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARYGI-10A-01D IL9103 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PARYGI-10A-01D_CAGGCG.bam	SRR1768029	@dbgap@:reads/SRP011999/SRS835633/SRX849253/SRR1768029/SRR1768029.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PARYMD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PARYMD-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYMD-04B-01D	DNA	EFO	SRS1124476	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PARYMD-04B-01D IL15666 library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	29.3	IL15666	SRX1360700	P18r	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample SJTALL040262_R1-TARGET-10-PARYMD-04B-01 in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PARYMD-04B-01D IL15666 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	SJTALL040262_R1-TARGET-10-PARYMD-04B-01_CATTTT_L007.bam	SRR2747631	@dbgap@:reads/SRP011999/SRS1124476/SRX1360700/SRR2747631/SRR2747631.sra	2	HG19						
TARGET-10-PASFHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFHR-09A-01D	DNA	EFO	SRS835659	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASFHR-09A-01D IL9110 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9110	SRX849279	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASFHR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASFHR-09A-01D IL9110 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASFHR-09A-01D_ACTTGA.bam	SRR1768030	@dbgap@:reads/SRP011999/SRS835659/SRX849279/SRR1768030/SRR1768030.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFHR-10A-01D	DNA	EFO	SRS835661	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASFHR-10A-01D IL9111 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9111	SRX849280	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASFHR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASFHR-10A-01D IL9111 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASFHR-10A-01D_GATCAG.bam	SRR1768031	@dbgap@:reads/SRP011999/SRS835661/SRX849280/SRR1768031/SRR1768031.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFKA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFKA-09A-01D	DNA	EFO	SRS835660	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASFKA-09A-01D IL9118 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9118	SRX849281	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASFKA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASFKA-09A-01D IL9118 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASFKA-09A-01D_CCGTCC.bam	SRR1768032	@dbgap@:reads/SRP011999/SRS835660/SRX849281/SRR1768032/SRR1768032.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFKA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFKA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFKA-10A-01D	DNA	EFO	SRS835662	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASFKA-10A-01D IL9119 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL9119	SRX849282	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASFKA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASFKA-10A-01D IL9119 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASFKA-10A-01D_GTAGAG.bam	SRR1768033	@dbgap@:reads/SRP011999/SRS835662/SRX849282/SRR1768033/SRR1768033.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFLK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFLK-09A-01D	DNA	EFO	SRS835664	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASFLK-09A-01D IL9126 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9126	SRX849283	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASFLK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASFLK-09A-01D IL9126 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASFLK-09A-01D_GGTAGC.bam	SRR1768034	@dbgap@:reads/SRP011999/SRS835664/SRX849283/SRR1768034/SRR1768034.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFLK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASFLK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFLK-10A-01D	DNA	EFO	SRS835663	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASFLK-10A-01D IL9127 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9127	SRX849284	P4_B12	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASFLK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASFLK-10A-01D IL9127 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASFLK-10A-01D_ACTGAT.bam	SRR1768035	@dbgap@:reads/SRP011999/SRS835663/SRX849284/SRR1768035/SRR1768035.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-03A-01D ING_ALLSRG.PASFXA03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA03A-1_1pA	SRX089161		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-03A-01D ING_ALLSRG.PASFXA03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_6.bam	SRR564074	@dbgap@:reads/SRP011999/SRS160254/SRX089161/SRR564074/SRR564074.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-03A-01D ING_ALLSRG.PASFXA03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA03A-1_1pA	SRX089161		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-03A-01D ING_ALLSRG.PASFXA03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_6.bam	SRR564074	@dbgap@:reads/SRP011999/SRS160254/SRX089161/SRR564074/SRR564074.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-03A-01D ING_ALLSRG.PASFXA03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA03A-1_1pA	SRX089161		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-03A-01D ING_ALLSRG.PASFXA03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_6.bam	SRR564074	@dbgap@:reads/SRP011999/SRS160254/SRX089161/SRR564074/SRR564074.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-03A-01D ING_ALLSRG.PASFXA03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA03A-1_1pA	SRX089161		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-03A-01D ING_ALLSRG.PASFXA03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_6.bam	SRR564074	@dbgap@:reads/SRP011999/SRS160254/SRX089161/SRR564074/SRR564074.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-04A-01D ING_ALLSRG.PASFXA04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA04A-1_1pA	SRX089194		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-04A-01D ING_ALLSRG.PASFXA04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_8.bam	SRR563992	@dbgap@:reads/SRP011999/SRS160255/SRX089194/SRR563992/SRR563992.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-04A-01D ING_ALLSRG.PASFXA04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA04A-1_1pA	SRX089194		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-04A-01D ING_ALLSRG.PASFXA04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_8.bam	SRR563992	@dbgap@:reads/SRP011999/SRS160255/SRX089194/SRR563992/SRR563992.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-04A-01D ING_ALLSRG.PASFXA04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA04A-1_1pA	SRX089194		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-04A-01D ING_ALLSRG.PASFXA04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_8.bam	SRR563992	@dbgap@:reads/SRP011999/SRS160255/SRX089194/SRR563992/SRR563992.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-04A-01D ING_ALLSRG.PASFXA04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA04A-1_1pA	SRX089194		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-04A-01D ING_ALLSRG.PASFXA04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110111_SN166_0162_B80YEGABXX_8.bam	SRR563992	@dbgap@:reads/SRP011999/SRS160255/SRX089194/SRR563992/SRR563992.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA10A-1_1pA	SRX089162		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_7.bam	SRR564017	@dbgap@:reads/SRP011999/SRS160256/SRX089162/SRR564017/SRR564017.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA10A-1_1pA	SRX089162		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_7.bam	SRR564017	@dbgap@:reads/SRP011999/SRS160256/SRX089162/SRR564017/SRR564017.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA10A-1_1pA	SRX089162		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_7.bam	SRR564017	@dbgap@:reads/SRP011999/SRS160256/SRX089162/SRR564017/SRR564017.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA10A-1_1pA	SRX089162		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_7.bam	SRR564017	@dbgap@:reads/SRP011999/SRS160256/SRX089162/SRR564017/SRR564017.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA10A-1_1pA	SRX089162		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_7.bam	SRR564017	@dbgap@:reads/SRP011999/SRS160256/SRX089162/SRR564017/SRR564017.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASFXA10A-1_1pA	SRX089162		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASFXA-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASFXA-10A-01D ING_ALLSRG.PASFXA10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_7.bam	SRR564017	@dbgap@:reads/SRP011999/SRS160256/SRX089162/SRR564017/SRR564017.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PASGBD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon		NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASGBD-40B	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASGBD-40B-01D	DNA	EFO	SRS1124475	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASGBD-40B-01D IL15667 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL15667	SRX1360701	P18r	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample SJTALL040263_R1-TARGET-10-PASGBD-40B-01 in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASGBD-40B-01D IL15667 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	SJTALL040263_R1-TARGET-10-PASGBD-40B-01_CCAACA_L008.bam	SRR2747632	@dbgap@:reads/SRP011999/SRS1124475/SRX1360701/SRR2747632/SRR2747632.sra	2	HG19						
TARGET-10-PASGFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASGFH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASGFH-09A-01D	DNA	EFO	SRS835996	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASGFH-09A-01D IL9749 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9749	SRX862574	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASGFH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASGFH-09A-01D IL9749 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASGFH-09A-01D_ATGAGC.bam	SRR1783523	@dbgap@:reads/SRP011999/SRS835996/SRX862574/SRR1783523/SRR1783523.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASGFH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASGFH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASGFH-10A-01D	DNA	EFO	SRS835997	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASGFH-10A-01D IL9750 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL9750	SRX862575	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASGFH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASGFH-10A-01D IL9750 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASGFH-10A-01D_ATTCCT.bam	SRR1783524	@dbgap@:reads/SRP011999/SRS835997/SRX862575/SRR1783524/SRR1783524.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASHDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHDV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHDV-09A-01D	DNA	EFO	SRS891211	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASHDV-09A-01D IL11582 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11582	SRX975782	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASHDV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASHDV-09A-01D IL11582 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASHDV-09A-01D_AGTCAA.bam	SRR1949646	@dbgap@:reads/SRP011999/SRS891211/SRX975782/SRR1949646/SRR1949646.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASHDV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHDV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHDV-14A-01D	DNA	EFO	SRS891226	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASHDV-14A-01D IL11583 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11583	SRX975764	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASHDV-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASHDV-14A-01D IL11583 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASHDV-14A-01D_AGTTCC.bam	SRR1949647	@dbgap@:reads/SRP011999/SRS891226/SRX975764/SRR1949647/SRR1949647.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASHNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHNK-09A-01D	DNA	EFO	SRS836011	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASHNK-09A-01D IL9757 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL9757	SRX862582	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASHNK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASHNK-09A-01D IL9757 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASHNK-09A-01D_CATGGC.bam	SRR1783525	@dbgap@:reads/SRP011999/SRS836011/SRX862582/SRR1783525/SRR1783525.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASHNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHNK-10A-01D	DNA	EFO	SRS836002	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASHNK-10A-01D IL9758 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9758	SRX862583	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASHNK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASHNK-10A-01D IL9758 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASHNK-10A-01D_CATTTT.bam	SRR1783526	@dbgap@:reads/SRP011999/SRS836002/SRX862583/SRR1783526/SRR1783526.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHUP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUP-09A-01D	DNA	EFO	SRS835673	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASHUP-09A-01D IL9162 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9162	SRX849293	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASHUP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASHUP-09A-01D IL9162 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASHUP-09A-01D_ACTTGA.bam	SRR1768036	@dbgap@:reads/SRP011999/SRS835673/SRX849293/SRR1768036/SRR1768036.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASHUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHUP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUP-14A-01D	DNA	EFO	SRS835676	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASHUP-14A-01D IL9163 library	PAIRED	GENOMIC	WXS	Hybrid Selection	178	26.7	IL9163	SRX849294	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASHUP-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASHUP-14A-01D IL9163 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASHUP-14A-01D_GATCAG.bam	SRR1768037	@dbgap@:reads/SRP011999/SRS835676/SRX849294/SRR1768037/SRR1768037.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASHXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHXL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHXL-09A-01D	DNA	EFO	SRS891237	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASHXL-09A-01D IL11584 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11584	SRX975756	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASHXL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASHXL-09A-01D IL11584 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASHXL-09A-01D_ATGTCA.bam	SRR1949648	@dbgap@:reads/SRP011999/SRS891237/SRX975756/SRR1949648/SRR1949648.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASHXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASHXL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHXL-14A-01D	DNA	EFO	SRS891238	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASHXL-14A-01D IL11585 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11585	SRX975750	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASHXL-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASHXL-14A-01D IL11585 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASHXL-14A-01D_CCGTCC.bam	SRR1949649	@dbgap@:reads/SRP011999/SRS891238/SRX975750/SRR1949649/SRR1949649.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASIIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASIIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIY-09A-01D	DNA	EFO	SRS836014	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASIIY-09A-01D IL9765 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL9765	SRX862590	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASIIY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASIIY-09A-01D IL9765 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASIIY-09A-01D_TAATCG.bam	SRR1783527	@dbgap@:reads/SRP011999/SRS836014/SRX862590/SRR1783527/SRR1783527.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASIIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASIIY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIY-10A-01D	DNA	EFO	SRS836015	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASIIY-10A-01D IL9766 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9766	SRX862591	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASIIY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASIIY-10A-01D IL9766 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASIIY-10A-01D_TACAGC.bam	SRR1783528	@dbgap@:reads/SRP011999/SRS836015/SRX862591/SRR1783528/SRR1783528.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASIIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASIIY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIY-10A-01D	DNA	EFO	SRS836015	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASIIY-10A-01D IL9766 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9766	SRX862591	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASIIY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASIIY-10A-01D IL9766 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASIIY-10A-01D_TACAGC_supp.bam	SRR2990559	@dbgap@:reads/SRP011999/SRS836015/SRX862591/SRR2990559/SRR2990559.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASILW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASILW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILW-09A-01D	DNA	EFO	SRS836021	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASILW-09A-01D IL9773 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL9773	SRX862597	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASILW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASILW-09A-01D IL9773 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASILW-09A-01D_CGATGT.bam	SRR1783529	@dbgap@:reads/SRP011999/SRS836021/SRX862597/SRR1783529/SRR1783529.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASILW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASILW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILW-10A-01D	DNA	EFO	SRS836023	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASILW-10A-01D IL9774 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9774	SRX862598	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASILW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASILW-10A-01D IL9774 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASILW-10A-01D_TGACCA.bam	SRR1783530	@dbgap@:reads/SRP011999/SRS836023/SRX862598/SRR1783530/SRR1783530.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASINX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASINX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASINX-09A-01D	DNA	EFO	SRS836029	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASINX-09A-01D IL9781 library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	29.8	IL9781	SRX862605	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASINX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASINX-09A-01D IL9781 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASINX-09A-01D_GGCTAC.bam	SRR1783531	@dbgap@:reads/SRP011999/SRS836029/SRX862605/SRR1783531/SRR1783531.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASINX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASINX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASINX-09A-01D	DNA	EFO	SRS836029	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASINX-09A-01D IL9781 library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	29.8	IL9781	SRX862605	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASINX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASINX-09A-01D IL9781 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASINX-09A-01D_GGCTAC_supp.bam	SRR2990560	@dbgap@:reads/SRP011999/SRS836029/SRX862605/SRR2990560/SRR2990560.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASINX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASINX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASINX-10A-01D	DNA	EFO	SRS836030	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASINX-10A-01D IL9782 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9782	SRX862606	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASINX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASINX-10A-01D IL9782 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASINX-10A-01D_CTTGTA.bam	SRR1783532	@dbgap@:reads/SRP011999/SRS836030/SRX862606/SRR1783532/SRR1783532.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASJJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJJR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASJJR-09A-01D	DNA	EFO	SRS1080781	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASJJR-09A-01D TARGET-10-PASJJR-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	67.8371	TARGET-10-PASJJR-09A-01_EXCAP_1	SRX1274491		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASJJR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PASJJR-09A-01D TARGET-10-PASJJR-09A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL177_E-TARGET-10-PASJJR-09A-01.bam	SRR2485642	@dbgap@:reads/SRP011999/SRS1080781/SRX1274491/SRR2485642/SRR2485642.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASJJR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJJR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASJJR-10A-01D	DNA	EFO	SRS1080780	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASJJR-10A-01D TARGET-10-PASJJR-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	58.6688	TARGET-10-PASJJR-10A-01_EXCAP_1	SRX1274492		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASJJR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PASJJR-10A-01D TARGET-10-PASJJR-10A-01_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL177_H-TARGET-10-PASJJR-10A-01.bam	SRR2485643	@dbgap@:reads/SRP011999/SRS1080780/SRX1274492/SRR2485643/SRR2485643.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASJLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJLN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASJLN-09A-01D	DNA	EFO	SRS891195	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASJLN-09A-01D IL11633 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11633	SRX975797	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASJLN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASJLN-09A-01D IL11633 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASJLN-09A-01D_CCGTCC.bam	SRR1949650	@dbgap@:reads/SRP011999/SRS891195/SRX975797/SRR1949650/SRR1949650.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASJLN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJLN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASJLN-10A-01D	DNA	EFO	SRS891255	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASJLN-10A-01D IL11558 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11558	SRX975735	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASJLN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASJLN-10A-01D IL11558 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASJLN-10A-01D_TGACCA.bam	SRR1949652	@dbgap@:reads/SRP011999/SRS891255/SRX975735/SRR1949652/SRR1949652.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASJMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJMK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASJMK-09A-01D	DNA	EFO	SRS891191	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASJMK-09A-01D IL11609 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11609	SRX975800	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASJMK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASJMK-09A-01D IL11609 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASJMK-09A-01D_CTCAGA.bam	SRR1949653	@dbgap@:reads/SRP011999/SRS891191/SRX975800/SRR1949653/SRR1949653.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASJMK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJMK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASJMK-10A-01D	DNA	EFO	SRS891131	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASJMK-10A-01D IL11613 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11613	SRX975864	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASJMK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASJMK-10A-01D IL11613 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASJMK-10A-01D_TATAAT.bam	SRR1949654	@dbgap@:reads/SRP011999/SRS891131/SRX975864/SRR1949654/SRR1949654.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASJYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJYI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASJYI-09A-01D	DNA	EFO	SRS891156	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASJYI-09A-01D IL11617 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11617	SRX975835	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASJYI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASJYI-09A-01D IL11617 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASJYI-09A-01D_TCGGCA.bam	SRR1949655	@dbgap@:reads/SRP011999/SRS891156/SRX975835/SRR1949655/SRR1949655.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASJYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASJYI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASJYI-10A-01D	DNA	EFO	SRS891143	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASJYI-10A-01D IL11621 library	PAIRED	GENOMIC	WXS	Hybrid Selection	224	29.9	IL11621	SRX975851	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASJYI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASJYI-10A-01D IL11621 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASJYI-10A-01D_TGACCA.bam	SRR1949656	@dbgap@:reads/SRP011999/SRS891143/SRX975851/SRR1949656/SRR1949656.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKAD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAD-09A-01D	DNA	EFO	SRS891165	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKAD-09A-01D IL11625 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11625	SRX975825	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKAD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKAD-09A-01D IL11625 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKAD-09A-01D_ACTTGA.bam	SRR1949657	@dbgap@:reads/SRP011999/SRS891165/SRX975825/SRR1949657/SRR1949657.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAD-10A-01D	DNA	EFO	SRS891128	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKAD-10A-01D IL11629 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11629	SRX975867	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKAD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKAD-10A-01D IL11629 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKAD-10A-01D_CTTGTA.bam	SRR1949658	@dbgap@:reads/SRP011999/SRS891128/SRX975867/SRR1949658/SRR1949658.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-03A-01D	DNA	EFO	SRS160257	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-03A-01D ING_ALLSRG.PASKAY03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PASKAY03A-1_1pA	SRX089195		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-03A-01D ING_ALLSRG.PASKAY03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_1.bam	SRR564047	@dbgap@:reads/SRP011999/SRS160257/SRX089195/SRR564047/SRR564047.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-03A-01D	DNA	EFO	SRS160257	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-03A-01D ING_ALLSRG.PASKAY03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PASKAY03A-1_1pA	SRX089195		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-03A-01D ING_ALLSRG.PASKAY03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_1.bam	SRR564047	@dbgap@:reads/SRP011999/SRS160257/SRX089195/SRR564047/SRR564047.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-03A-01D	DNA	EFO	SRS160257	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-03A-01D ING_ALLSRG.PASKAY03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PASKAY03A-1_1pA	SRX089195		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-03A-01D ING_ALLSRG.PASKAY03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_1.bam	SRR564047	@dbgap@:reads/SRP011999/SRS160257/SRX089195/SRR564047/SRR564047.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-03A-01D	DNA	EFO	SRS160257	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-03A-01D ING_ALLSRG.PASKAY03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PASKAY03A-1_1pA	SRX089195		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-03A-01D ING_ALLSRG.PASKAY03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_1.bam	SRR564047	@dbgap@:reads/SRP011999/SRS160257/SRX089195/SRR564047/SRR564047.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-04A-01D	DNA	EFO	SRS160258	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-04A-01D ING_ALLSRG.PASKAY04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PASKAY04A-1_1pA	SRX089176		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-04A-01D ING_ALLSRG.PASKAY04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_8.bam	SRR563942	@dbgap@:reads/SRP011999/SRS160258/SRX089176/SRR563942/SRR563942.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-04A-01D	DNA	EFO	SRS160258	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-04A-01D ING_ALLSRG.PASKAY04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PASKAY04A-1_1pA	SRX089176		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-04A-01D ING_ALLSRG.PASKAY04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_8.bam	SRR563942	@dbgap@:reads/SRP011999/SRS160258/SRX089176/SRR563942/SRR563942.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-04A-01D	DNA	EFO	SRS160258	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-04A-01D ING_ALLSRG.PASKAY04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PASKAY04A-1_1pA	SRX089176		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-04A-01D ING_ALLSRG.PASKAY04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_8.bam	SRR563942	@dbgap@:reads/SRP011999/SRS160258/SRX089176/SRR563942/SRR563942.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-04A-01D	DNA	EFO	SRS160258	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-04A-01D ING_ALLSRG.PASKAY04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		ING_ALLSRG.PASKAY04A-1_1pA	SRX089176		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-04A-01D ING_ALLSRG.PASKAY04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	101223_SN142_0268_B813LDABXX_8.bam	SRR563942	@dbgap@:reads/SRP011999/SRS160258/SRX089176/SRR563942/SRR563942.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-10A-01D	DNA	EFO	SRS376421	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_ALLSRG.PASKAY10A-1_3pA	SRX147064		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120215_SN821_0172_BD0N76ACXX_3_ID05_1.bam	SRR566175	@dbgap@:reads/SRP011999/SRS376421/SRX147064/SRR566175/SRR566175.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-10A-01D	DNA	EFO	SRS376421	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_ALLSRG.PASKAY10A-1_3pA	SRX147064		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120215_SN821_0172_BD0N76ACXX_3_ID05_1.bam	SRR566175	@dbgap@:reads/SRP011999/SRS376421/SRX147064/SRR566175/SRR566175.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-10A-01D	DNA	EFO	SRS376421	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_ALLSRG.PASKAY10A-1_3pA	SRX147064		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120215_SN821_0172_BD0N76ACXX_3_ID05_1.bam	SRR566175	@dbgap@:reads/SRP011999/SRS376421/SRX147064/SRR566175/SRR566175.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-10A-01D	DNA	EFO	SRS376421	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_ALLSRG.PASKAY10A-1_3pA	SRX147064		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120215_SN821_0172_BD0N76ACXX_3_ID05_1.bam	SRR566175	@dbgap@:reads/SRP011999/SRS376421/SRX147064/SRR566175/SRR566175.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-primary-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-10A-01D	DNA	EFO	SRS376421	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_ALLSRG.PASKAY10A-1_3pA	SRX147064		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120215_SN821_0172_BD0N76ACXX_3_ID05_1.bam	SRR566175	@dbgap@:reads/SRP011999/SRS376421/SRX147064/SRR566175/SRR566175.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASKAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASKAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKAY-10A-01D	DNA	EFO	SRS376421	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_ALLSRG.PASKAY10A-1_3pA	SRX147064		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASKAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASKAY-10A-01D IWX_ALLSRG.PASKAY10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120215_SN821_0172_BD0N76ACXX_3_ID05_1.bam	SRR566175	@dbgap@:reads/SRP011999/SRS376421/SRX147064/SRR566175/SRR566175.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PASKCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKCL-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKCL-09B-01D	DNA	EFO	SRS891231	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKCL-09B-01D IL11586 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11586	SRX975762	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKCL-09B-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKCL-09B-01D IL11586 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKCL-09B-01D_GTAGAG.bam	SRR1949659	@dbgap@:reads/SRP011999/SRS891231/SRX975762/SRR1949659/SRR1949659.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKCL-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKCL-09B-01D	DNA	EFO	SRS891231	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKCL-09B-01D IL11586 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11586	SRX975762	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKCL-09B-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKCL-09B-01D IL11586 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKCL-09B-01D_GTAGAG_supp.bam	SRR2990561	@dbgap@:reads/SRP011999/SRS891231/SRX975762/SRR2990561/SRR2990561.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKCL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKCL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKCL-10A-01D	DNA	EFO	SRS891203	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKCL-10A-01D IL11587 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL11587	SRX975787	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKCL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKCL-10A-01D IL11587 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKCL-10A-01D_GTCCGC.bam	SRR1949660	@dbgap@:reads/SRP011999/SRS891203/SRX975787/SRR1949660/SRR1949660.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKGG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKGG-09A-01D	DNA	EFO	SRS835692	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKGG-09A-01D IL9170 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9170	SRX849313	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKGG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKGG-09A-01D IL9170 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKGG-09A-01D_CCGTCC.bam	SRR1768038	@dbgap@:reads/SRP011999/SRS835692/SRX849313/SRR1768038/SRR1768038.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKGG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKGG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKGG-14A-01D	DNA	EFO	SRS835690	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKGG-14A-01D IL9171 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9171	SRX849314	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKGG-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKGG-14A-01D IL9171 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKGG-14A-01D_GTAGAG.bam	SRR1768039	@dbgap@:reads/SRP011999/SRS835690/SRX849314/SRR1768039/SRR1768039.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKIC-09A-01D	DNA	EFO	SRS1080782	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASKIC-09A-01D SJTALL001777_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	68.3406	SJTALL001777_D1_EXCAP_1	SRX1274493		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASKIC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PASKIC-09A-01D SJTALL001777_D1_EXCAP_1 run	sequencing assay	EFO	166	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001777_D1-TARGET-10-PASKIC-09A-01.bam	SRR2485644	@dbgap@:reads/SRP011999/SRS1080782/SRX1274493/SRR2485644/SRR2485644.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKIC-10A-01D	DNA	EFO	SRS1080779	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASKIC-10A-01D SJTALL001777_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	65.2956	SJTALL001777_G1_EXCAP_1	SRX1274494		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASKIC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PASKIC-10A-01D SJTALL001777_G1_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001777_G1-TARGET-10-PASKIC-10A-01.bam	SRR2485645	@dbgap@:reads/SRP011999/SRS1080779/SRX1274494/SRR2485645/SRR2485645.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKRN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKRN-03A-01D	DNA	EFO	SRS1080778	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASKRN-03A-01D SJTALL002042_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	153	51.6424	SJTALL002042_D1_EXCAP_1	SRX1274495		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASKRN-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASKRN-03A-01D SJTALL002042_D1_EXCAP_1 run	sequencing assay	EFO	163	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002042_D1-TARGET-10-PASKRN-03A-01.bam	SRR2485646	@dbgap@:reads/SRP011999/SRS1080778/SRX1274495/SRR2485646/SRR2485646.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKRN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKRN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKRN-10A-01D	DNA	EFO	SRS1080777	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASKRN-10A-01D SJTALL002042_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	163	65.0516	SJTALL002042_G1_EXCAP_1	SRX1274496		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASKRN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASKRN-10A-01D SJTALL002042_G1_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002042_G1-TARGET-10-PASKRN-10A-01.bam	SRR2485647	@dbgap@:reads/SRP011999/SRS1080777/SRX1274496/SRR2485647/SRR2485647.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKSY-09A-01D	DNA	EFO	SRS891224	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKSY-09A-01D IL11826 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL11826	SRX975767	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKSY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKSY-09A-01D IL11826 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKSY-09A-01D_GATCAG.bam	SRR1949661	@dbgap@:reads/SRP011999/SRS891224/SRX975767/SRR1949661/SRR1949661.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKSY-10A-01D	DNA	EFO	SRS891210	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKSY-10A-01D IL11630 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL11630	SRX975783	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKSY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKSY-10A-01D IL11630 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKSY-10A-01D_AGTCAA.bam	SRR1949662	@dbgap@:reads/SRP011999/SRS891210/SRX975783/SRR1949662/SRR1949662.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKTG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKTG-09A-01D	DNA	EFO	SRS835693	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKTG-09A-01D IL9178 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9178	SRX849315	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKTG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKTG-09A-01D IL9178 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKTG-09A-01D_GGTAGC.bam	SRR1768040	@dbgap@:reads/SRP011999/SRS835693/SRX849315/SRR1768040/SRR1768040.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKTG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKTG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKTG-10A-01D	DNA	EFO	SRS891140	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASKTG-10A-01D IL11628 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL11628	SRX975854	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASKTG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASKTG-10A-01D IL11628 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASKTG-10A-01D_GGCTAC.bam	SRR1949663	@dbgap@:reads/SRP011999/SRS891140/SRX975854/SRR1949663/SRR1949663.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKXN-09A-01D	DNA	EFO	SRS1080776	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASKXN-09A-01D SJTALL002050_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	87.501	SJTALL002050_D1_EXCAP_1	SRX1274497		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASKXN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASKXN-09A-01D SJTALL002050_D1_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002050_D1-TARGET-10-PASKXN-09A-01.bam	SRR2485648	@dbgap@:reads/SRP011999/SRS1080776/SRX1274497/SRR2485648/SRR2485648.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASKXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASKXN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKXN-14A-01D	DNA	EFO	SRS1080775	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASKXN-14A-01D SJTALL002050_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	72.738	SJTALL002050_G1_EXCAP_1	SRX1274498		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASKXN-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASKXN-14A-01D SJTALL002050_G1_EXCAP_1 run	sequencing assay	EFO	166	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002050_G1-TARGET-10-PASKXN-14A-01.bam	SRR2485649	@dbgap@:reads/SRP011999/SRS1080775/SRX1274498/SRR2485649/SRR2485649.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASLAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASLAB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLAB-09A-01D	DNA	EFO	SRS891262	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASLAB-09A-01D IL11555 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11555	SRX975731	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASLAB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASLAB-09A-01D IL11555 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASLAB-09A-01D_ATCACG.bam	SRR1949664	@dbgap@:reads/SRP011999/SRS891262/SRX975731/SRR1949664/SRR1949664.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASLAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASLAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLAB-10A-01D	DNA	EFO	SRS891258	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASLAB-10A-01D IL11559 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11559	SRX975737	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASLAB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASLAB-10A-01D IL11559 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASLAB-10A-01D_ACAGTG.bam	SRR1949665	@dbgap@:reads/SRP011999/SRS891258/SRX975737/SRR1949665/SRR1949665.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASLBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASLBB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLBB-09A-01D	DNA	EFO	SRS1080774	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASLBB-09A-01D SJTALL001786_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	75.0621	SJTALL001786_D1_EXCAP_1	SRX1274499		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASLBB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PASLBB-09A-01D SJTALL001786_D1_EXCAP_1 run	sequencing assay	EFO	189	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001786_D1-TARGET-10-PASLBB-09A-01.bam	SRR2485650	@dbgap@:reads/SRP011999/SRS1080774/SRX1274499/SRR2485650/SRR2485650.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASLBB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASLBB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLBB-10A-01D	DNA	EFO	SRS1080773	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASLBB-10A-01D SJTALL001786_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	172	65.0844	SJTALL001786_G1_EXCAP_1	SRX1274500		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASLBB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PASLBB-10A-01D SJTALL001786_G1_EXCAP_1 run	sequencing assay	EFO	183	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001786_G1-TARGET-10-PASLBB-10A-01.bam	SRR2485651	@dbgap@:reads/SRP011999/SRS1080773/SRX1274500/SRR2485651/SRR2485651.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-03A-01D ING_ALLSRG.PASLZM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM03A-1_1pA	SRX089177		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-03A-01D ING_ALLSRG.PASLZM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_4.bam	SRR563911	@dbgap@:reads/SRP011999/SRS160260/SRX089177/SRR563911/SRR563911.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-03A-01D ING_ALLSRG.PASLZM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM03A-1_1pA	SRX089177		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-03A-01D ING_ALLSRG.PASLZM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_4.bam	SRR563911	@dbgap@:reads/SRP011999/SRS160260/SRX089177/SRR563911/SRR563911.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-03A-01D ING_ALLSRG.PASLZM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM03A-1_1pA	SRX089177		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-03A-01D ING_ALLSRG.PASLZM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_4.bam	SRR563911	@dbgap@:reads/SRP011999/SRS160260/SRX089177/SRR563911/SRR563911.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-03A-01D ING_ALLSRG.PASLZM03A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM03A-1_1pA	SRX089177		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-03A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-03A-01D ING_ALLSRG.PASLZM03A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_4.bam	SRR563911	@dbgap@:reads/SRP011999/SRS160260/SRX089177/SRR563911/SRR563911.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-04A-01D ING_ALLSRG.PASLZM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM04A-1_1pA	SRX089178		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-04A-01D ING_ALLSRG.PASLZM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_2.bam	SRR563777	@dbgap@:reads/SRP011999/SRS160261/SRX089178/SRR563777/SRR563777.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-04A-01D ING_ALLSRG.PASLZM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM04A-1_1pA	SRX089178		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-04A-01D ING_ALLSRG.PASLZM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_2.bam	SRR563777	@dbgap@:reads/SRP011999/SRS160261/SRX089178/SRR563777/SRR563777.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-04A-01D ING_ALLSRG.PASLZM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM04A-1_1pA	SRX089178		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-04A-01D ING_ALLSRG.PASLZM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_2.bam	SRR563777	@dbgap@:reads/SRP011999/SRS160261/SRX089178/SRR563777/SRR563777.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-04A-01D ING_ALLSRG.PASLZM04A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM04A-1_1pA	SRX089178		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-04A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-04A-01D ING_ALLSRG.PASLZM04A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110103_SN166_0160_B818THABXX_2.bam	SRR563777	@dbgap@:reads/SRP011999/SRS160261/SRX089178/SRR563777/SRR563777.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM10A-1_1pA	SRX089179		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_5.bam	SRR563775	@dbgap@:reads/SRP011999/SRS160262/SRX089179/SRR563775/SRR563775.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM10A-1_1pA	SRX089179		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_5.bam	SRR563775	@dbgap@:reads/SRP011999/SRS160262/SRX089179/SRR563775/SRR563775.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_BALL_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM10A-1_1pA	SRX089179		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_5.bam	SRR563775	@dbgap@:reads/SRP011999/SRS160262/SRX089179/SRR563775/SRR563775.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-hg19-germline.mafplus.txt	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM10A-1_1pA	SRX089179		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_5.bam	SRR563775	@dbgap@:reads/SRP011999/SRS160262/SRX089179/SRR563775/SRR563775.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-primary-somatic-v2.4-mafplus.xlsx	3			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM10A-1_1pA	SRX089179		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_5.bam	SRR563775	@dbgap@:reads/SRP011999/SRS160262/SRX089179/SRR563775/SRR563775.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-all-recurrent-somatic-v2.4-mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-all-recurrent-somatic-verified-v2.4-mafplus.xlsx	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_ALLSRG.PASLZM10A-1_1pA	SRX089179		"Whole Exome Sequencing of TARGET-ALL sample TARGET-10-PASLZM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM		TARGET-10-PASLZM-10A-01D ING_ALLSRG.PASLZM10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_5.bam	SRR563775	@dbgap@:reads/SRP011999/SRS160262/SRX089179/SRR563775/SRR563775.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall:01	TARGET_ALLP2_WXS_Illumina_somatic.maf.txt	3	stjude.org:Protocol:WXS-FilterVerified:01	TARGET_ALLP2_WXS_Illumina_somatic_verified.maf.txt	3
TARGET-10-PASMHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMHF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMHF-09A-01D	DNA	EFO	SRS836008	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASMHF-09A-01D IL9761 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL9761	SRX862586	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASMHF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASMHF-09A-01D IL9761 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASMHF-09A-01D_CTAGCT.bam	SRR1783533	@dbgap@:reads/SRP011999/SRS836008/SRX862586/SRR1783533/SRR1783533.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASMHF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMHF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMHF-10A-01D	DNA	EFO	SRS836009	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASMHF-10A-01D IL9762 library	PAIRED	GENOMIC	WXS	Hybrid Selection	178	26.7	IL9762	SRX862587	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASMHF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASMHF-10A-01D IL9762 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASMHF-10A-01D_CTATAC.bam	SRR1783534	@dbgap@:reads/SRP011999/SRS836009/SRX862587/SRR1783534/SRR1783534.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASMIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMIC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMIC-09A-01D	DNA	EFO	SRS836020	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASMIC-09A-01D IL9769 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL9769	SRX862594	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASMIC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASMIC-09A-01D IL9769 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASMIC-09A-01D_TCCCGA.bam	SRR1783535	@dbgap@:reads/SRP011999/SRS836020/SRX862594/SRR1783535/SRR1783535.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASMIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMIC-10A-01D	DNA	EFO	SRS891136	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASMIC-10A-01D IL11619 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL11619	SRX975858	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASMIC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASMIC-10A-01D IL11619 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASMIC-10A-01D_CGATGT.bam	SRR1949666	@dbgap@:reads/SRP011999/SRS891136/SRX975858/SRR1949666/SRR1949666.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASMNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMNV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMNV-09A-01D	DNA	EFO	SRS836025	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASMNV-09A-01D IL9777 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL9777	SRX862601	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASMNV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASMNV-09A-01D IL9777 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASMNV-09A-01D_CAGATC.bam	SRR1783536	@dbgap@:reads/SRP011999/SRS836025/SRX862601/SRR1783536/SRR1783536.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASMNV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASMNV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMNV-10A-01D	DNA	EFO	SRS836026	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASMNV-10A-01D IL9778 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9778	SRX862602	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASMNV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASMNV-10A-01D IL9778 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASMNV-10A-01D_ACTTGA.bam	SRR1783537	@dbgap@:reads/SRP011999/SRS836026/SRX862602/SRR1783537/SRR1783537.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASNEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASNEH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNEH-09A-01D	DNA	EFO	SRS836033	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASNEH-09A-01D IL9785 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL9785	SRX862609	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASNEH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASNEH-09A-01D IL9785 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASNEH-09A-01D_ATGTCA.bam	SRR1783538	@dbgap@:reads/SRP011999/SRS836033/SRX862609/SRR1783538/SRR1783538.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASNEH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASNEH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNEH-10A-01D	DNA	EFO	SRS836034	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASNEH-10A-01D IL9786 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL9786	SRX862610	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASNEH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASNEH-10A-01D IL9786 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASNEH-10A-01D_CCGTCC.bam	SRR1783539	@dbgap@:reads/SRP011999/SRS836034/SRX862610/SRR1783539/SRR1783539.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASNTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASNTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNTZ-09A-01D	DNA	EFO	SRS891173	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASNTZ-09A-01D IL11607 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL11607	SRX975818	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASNTZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASNTZ-09A-01D IL11607 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASNTZ-09A-01D_CTAGCT.bam	SRR1949667	@dbgap@:reads/SRP011999/SRS891173/SRX975818/SRR1949667/SRR1949667.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASNTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASNTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNTZ-10A-01D	DNA	EFO	SRS891157	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASNTZ-10A-01D IL11611 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11611	SRX975836	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASNTZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASNTZ-10A-01D IL11611 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASNTZ-10A-01D_TAATCG.bam	SRR1949668	@dbgap@:reads/SRP011999/SRS891157/SRX975836/SRR1949668/SRR1949668.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASPBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPBU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASPBU-09A-01D	DNA	EFO	SRS835680	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASPBU-09A-01D IL9186 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9186	SRX849298	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASPBU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASPBU-09A-01D IL9186 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASPBU-09A-01D_CACTCA.bam	SRR1768041	@dbgap@:reads/SRP011999/SRS835680/SRX849298/SRR1768041/SRR1768041.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASPBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPBU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASPBU-10A-01D	DNA	EFO	SRS835678	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASPBU-10A-01D IL9187 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9187	SRX849299	P4_B13	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASPBU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASPBU-10A-01D IL9187 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASPBU-10A-01D_CAGGCG.bam	SRR1768042	@dbgap@:reads/SRP011999/SRS835678/SRX849299/SRR1768042/SRR1768042.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPDS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASPDS-09A-01D	DNA	EFO	SRS891246	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASPDS-09A-01D IL11601 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL11601	SRX975746	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASPDS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASPDS-09A-01D IL11601 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASPDS-09A-01D_CACTCA.bam	SRR1949669	@dbgap@:reads/SRP011999/SRS891246/SRX975746/SRR1949669/SRR1949669.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASPDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPDS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASPDS-14A-01D	DNA	EFO	SRS891222	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASPDS-14A-01D IL11606 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11606	SRX975770	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASPDS-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASPDS-14A-01D IL11606 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASPDS-14A-01D_CGGAAT.bam	SRR1949670	@dbgap@:reads/SRP011999/SRS891222/SRX975770/SRR1949670/SRR1949670.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASPPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASPPN-09A-01D	DNA	EFO	SRS891220	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASPPN-09A-01D IL11610 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11610	SRX975772	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASPPN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASPPN-09A-01D IL11610 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASPPN-09A-01D_GACGAC.bam	SRR1949671	@dbgap@:reads/SRP011999/SRS891220/SRX975772/SRR1949671/SRR1949671.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASPPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASPPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASPPN-10A-01D	DNA	EFO	SRS891221	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASPPN-10A-01D IL11614 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11614	SRX975771	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASPPN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASPPN-10A-01D IL11614 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASPPN-10A-01D_TCATTC.bam	SRR1949672	@dbgap@:reads/SRP011999/SRS891221/SRX975771/SRR1949672/SRR1949672.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASRCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASRCV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRCV-09A-01D	DNA	EFO	SRS1080772	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASRCV-09A-01D SJTALL001785_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	178	71.3522	SJTALL001785_D1_EXCAP_1	SRX1274501		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASRCV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PASRCV-09A-01D SJTALL001785_D1_EXCAP_1 run	sequencing assay	EFO	184	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001785_D1-TARGET-10-PASRCV-09A-01.bam	SRR2485652	@dbgap@:reads/SRP011999/SRS1080772/SRX1274501/SRR2485652/SRR2485652.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASRCV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASRCV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRCV-10A-01D	DNA	EFO	SRS1080771	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASRCV-10A-01D SJTALL001785_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	168	57.7251	SJTALL001785_G1_EXCAP_1	SRX1274502		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASRCV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PASRCV-10A-01D SJTALL001785_G1_EXCAP_1 run	sequencing assay	EFO	184	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001785_G1-TARGET-10-PASRCV-10A-01.bam	SRR2485653	@dbgap@:reads/SRP011999/SRS1080771/SRX1274502/SRR2485653/SRR2485653.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRMM-09A-01D	DNA	EFO	SRS835979	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASRMM-09A-01D IL9729 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9729	SRX862556	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASRMM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASRMM-09A-01D IL9729 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASRMM-09A-01D_GCCAAT.bam	SRR1783540	@dbgap@:reads/SRP011999/SRS835979/SRX862556/SRR1783540/SRR1783540.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASRMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRMM-10A-01D	DNA	EFO	SRS835978	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASRMM-10A-01D IL9730 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9730	SRX862557	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASRMM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASRMM-10A-01D IL9730 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASRMM-10A-01D_CAGATC.bam	SRR1783541	@dbgap@:reads/SRP011999/SRS835978/SRX862557/SRR1783541/SRR1783541.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASRMM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRMM-10A-01D	DNA	EFO	SRS835978	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASRMM-10A-01D IL9730 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9730	SRX862557	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASRMM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASRMM-10A-01D IL9730 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASRMM-10A-01D_CAGATC_supp.bam	SRR2990562	@dbgap@:reads/SRP011999/SRS835978/SRX862557/SRR2990562/SRR2990562.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSEF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSEF-09A-01D	DNA	EFO	SRS890931	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSEF-09A-01D IL11602 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL11602	SRX975752	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSEF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSEF-09A-01D IL11602 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSEF-09A-01D_CAGGCG.bam	SRR1949673	@dbgap@:reads/SRP011999/SRS890931/SRX975752/SRR1949673/SRR1949673.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSEF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSEF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSEF-10A-01D	DNA	EFO	SRS835987	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSEF-10A-01D IL9738 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL9738	SRX862564	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSEF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSEF-10A-01D IL9738 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSEF-10A-01D_ATGTCA.bam	SRR1783542	@dbgap@:reads/SRP011999/SRS835987/SRX862564/SRR1783542/SRR1783542.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSHC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSHC-09A-01D	DNA	EFO	SRS835995	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSHC-09A-01D IL9745 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9745	SRX862571	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSHC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSHC-09A-01D IL9745 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSHC-09A-01D_CGTACG.bam	SRR1783543	@dbgap@:reads/SRP011999/SRS835995/SRX862571/SRR1783543/SRR1783543.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSHC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSHC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSHC-10A-01D	DNA	EFO	SRS891185	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSHC-10A-01D IL11615 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL11615	SRX975806	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSHC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSHC-10A-01D IL11615 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSHC-10A-01D_TCCCGA.bam	SRR1949674	@dbgap@:reads/SRP011999/SRS891185/SRX975806/SRR1949674/SRR1949674.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSPP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSPP-09A-01D	DNA	EFO	SRS836000	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSPP-09A-01D IL9753 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL9753	SRX862578	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSPP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSPP-09A-01D IL9753 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSPP-09A-01D_CACCGG.bam	SRR1783544	@dbgap@:reads/SRP011999/SRS836000/SRX862578/SRR1783544/SRR1783544.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSPP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSPP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSPP-10A-01D	DNA	EFO	SRS835999	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSPP-10A-01D IL9754 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL9754	SRX862579	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSPP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSPP-10A-01D IL9754 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSPP-10A-01D_CACGAT.bam	SRR1783545	@dbgap@:reads/SRP011999/SRS835999/SRX862579/SRR1783545/SRR1783545.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSRP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSRP-09A-01D	DNA	EFO	SRS836022	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSRP-09A-01D IL9775 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL9775	SRX862599	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSRP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSRP-09A-01D IL9775 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSRP-09A-01D_ACAGTG.bam	SRR1783546	@dbgap@:reads/SRP011999/SRS836022/SRX862599/SRR1783546/SRR1783546.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSRP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSRP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSRP-10A-01D	DNA	EFO	SRS836024	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSRP-10A-01D IL9776 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9776	SRX862600	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSRP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSRP-10A-01D IL9776 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSRP-10A-01D_GCCAAT.bam	SRR1783547	@dbgap@:reads/SRP011999/SRS836024/SRX862600/SRR1783547/SRR1783547.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSSR-09A-01D	DNA	EFO	SRS836031	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSSR-09A-01D IL9783 library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	29.1	IL9783	SRX862607	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSSR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSSR-09A-01D IL9783 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSSR-09A-01D_AGTCAA.bam	SRR1783548	@dbgap@:reads/SRP011999/SRS836031/SRX862607/SRR1783548/SRR1783548.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSSR-10A-01D	DNA	EFO	SRS836032	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSSR-10A-01D IL9784 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9784	SRX862608	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSSR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSSR-10A-01D IL9784 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSSR-10A-01D_AGTTCC.bam	SRR1783549	@dbgap@:reads/SRP011999/SRS836032/SRX862608/SRR1783549/SRR1783549.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSZA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSZA-09A-01D	DNA	EFO	SRS835894	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSZA-09A-01D IL9210 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9210	SRX862469	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSZA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSZA-09A-01D IL9210 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSZA-09A-01D_ATCACG.bam	SRR1783332	@dbgap@:reads/SRP011999/SRS835894/SRX862469/SRR1783332/SRR1783332.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASSZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASSZA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSZA-14A-01D	DNA	EFO	SRS835896	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASSZA-14A-01D IL9211 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9211	SRX862470	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASSZA-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASSZA-14A-01D IL9211 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASSZA-14A-01D_CGATGT.bam	SRR1783333	@dbgap@:reads/SRP011999/SRS835896/SRX862470/SRR1783333/SRR1783333.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTDU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTDU-09A-01D	DNA	EFO	SRS891206	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASTDU-09A-01D IL11618 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL11618	SRX975784	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASTDU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASTDU-09A-01D IL11618 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASTDU-09A-01D_ATCACG.bam	SRR1949675	@dbgap@:reads/SRP011999/SRS891206/SRX975784/SRR1949675/SRR1949675.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTDU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTDU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTDU-10A-01D	DNA	EFO	SRS891184	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASTDU-10A-01D IL11622 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL11622	SRX975807	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASTDU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASTDU-10A-01D IL11622 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASTDU-10A-01D_ACAGTG.bam	SRR1949676	@dbgap@:reads/SRP011999/SRS891184/SRX975807/SRR1949676/SRR1949676.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTHE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTHE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTHE-09A-01D	DNA	EFO	SRS835906	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASTHE-09A-01D IL9218 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9218	SRX862477	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASTHE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASTHE-09A-01D IL9218 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASTHE-09A-01D_TAGCTT.bam	SRR1783334	@dbgap@:reads/SRP011999/SRS835906/SRX862477/SRR1783334/SRR1783334.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTHE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTHE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTHE-10A-01D	DNA	EFO	SRS835901	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASTHE-10A-01D IL9219 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL9219	SRX862478	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASTHE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASTHE-10A-01D IL9219 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASTHE-10A-01D_GGCTAC.bam	SRR1783335	@dbgap@:reads/SRP011999/SRS835901/SRX862478/SRR1783335/SRR1783335.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTLP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLP-09A-01D	DNA	EFO	SRS1080770	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASTLP-09A-01D SJTALL002065_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	63.1642	SJTALL002065_D1_EXCAP_1	SRX1274503		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASTLP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASTLP-09A-01D SJTALL002065_D1_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002065_D1-TARGET-10-PASTLP-09A-01.bam	SRR2485654	@dbgap@:reads/SRP011999/SRS1080770/SRX1274503/SRR2485654/SRR2485654.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTLP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTLP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLP-10A-01D	DNA	EFO	SRS1080769	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASTLP-10A-01D SJTALL002065_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	144	40.0205	SJTALL002065_G1_EXCAP_1	SRX1274504		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASTLP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASTLP-10A-01D SJTALL002065_G1_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002065_G1-TARGET-10-PASTLP-10A-01.bam	SRR2485655	@dbgap@:reads/SRP011999/SRS1080769/SRX1274504/SRR2485655/SRR2485655.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTPT-09A-01D	DNA	EFO	SRS891260	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASTPT-09A-01D IL11562 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11562	SRX975733	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASTPT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASTPT-09A-01D IL11562 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASTPT-09A-01D_ACTTGA.bam	SRR1949677	@dbgap@:reads/SRP011999/SRS891260/SRX975733/SRR1949677/SRR1949677.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTPT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTPT-09A-01D	DNA	EFO	SRS891260	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASTPT-09A-01D IL11562 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11562	SRX975733	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASTPT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASTPT-09A-01D IL11562 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASTPT-09A-01D_ACTTGA_supp.bam	SRR2990563	@dbgap@:reads/SRP011999/SRS891260/SRX975733/SRR2990563/SRR2990563.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTPT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTPT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTPT-10A-01D	DNA	EFO	SRS891247	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASTPT-10A-01D IL11566 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11566	SRX975744	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASTPT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASTPT-10A-01D IL11566 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASTPT-10A-01D_CTTGTA.bam	SRR1949678	@dbgap@:reads/SRP011999/SRS891247/SRX975744/SRR1949678/SRR1949678.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTXU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTXU-09A-01D	DNA	EFO	SRS1080768	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASTXU-09A-01D SJTALL002069_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	56.9049	SJTALL002069_D1_EXCAP_1	SRX1274505		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASTXU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASTXU-09A-01D SJTALL002069_D1_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002069_D1-TARGET-10-PASTXU-09A-01.bam	SRR2485656	@dbgap@:reads/SRP011999/SRS1080768/SRX1274505/SRR2485656/SRR2485656.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASTXU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASTXU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTXU-10A-01D	DNA	EFO	SRS1080767	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASTXU-10A-01D SJTALL002069_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	162	61.0998	SJTALL002069_G1_EXCAP_1	SRX1274506		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASTXU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASTXU-10A-01D SJTALL002069_G1_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002069_G1-TARGET-10-PASTXU-10A-01.bam	SRR2485657	@dbgap@:reads/SRP011999/SRS1080767/SRX1274506/SRR2485657/SRR2485657.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASUGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUGC-09A-01D	DNA	EFO	SRS1080766	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASUGC-09A-01D SJTALL001780_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	66.4592	SJTALL001780_D1_EXCAP_1	SRX1274507		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASUGC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PASUGC-09A-01D SJTALL001780_D1_EXCAP_1 run	sequencing assay	EFO	184	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001780_D1-TARGET-10-PASUGC-09A-01.bam	SRR2485658	@dbgap@:reads/SRP011999/SRS1080766/SRX1274507/SRR2485658/SRR2485658.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASUGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUGC-10A-01D	DNA	EFO	SRS1080765	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASUGC-10A-01D SJTALL001780_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	72.1172	SJTALL001780_G1_EXCAP_1	SRX1274508		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASUGC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PASUGC-10A-01D SJTALL001780_G1_EXCAP_1 run	sequencing assay	EFO	188	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001780_G1-TARGET-10-PASUGC-10A-01.bam	SRR2485659	@dbgap@:reads/SRP011999/SRS1080765/SRX1274508/SRR2485659/SRR2485659.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASUIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUIN-09A-01D	DNA	EFO	SRS835908	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASUIN-09A-01D IL9226 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9226	SRX862485	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASUIN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASUIN-09A-01D IL9226 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASUIN-09A-01D_GTCCGC.bam	SRR1783336	@dbgap@:reads/SRP011999/SRS835908/SRX862485/SRR1783336/SRR1783336.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASUIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUIN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUIN-10A-01D	DNA	EFO	SRS835909	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASUIN-10A-01D IL9227 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9227	SRX862486	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASUIN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASUIN-10A-01D IL9227 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASUIN-10A-01D_GTGAAA.bam	SRR1783337	@dbgap@:reads/SRP011999/SRS835909/SRX862486/SRR1783337/SRR1783337.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASUSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUSV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUSV-09A-01D	DNA	EFO	SRS836004	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASUSV-09A-01D IL9759 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL9759	SRX862584	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASUSV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASUSV-09A-01D IL9759 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASUSV-09A-01D_CCAACA.bam	SRR1783550	@dbgap@:reads/SRP011999/SRS836004/SRX862584/SRR1783550/SRR1783550.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASUSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASUSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUSV-10A-01D	DNA	EFO	SRS836005	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASUSV-10A-01D IL9760 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9760	SRX862585	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASUSV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASUSV-10A-01D IL9760 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASUSV-10A-01D_CGGAAT.bam	SRR1783551	@dbgap@:reads/SRP011999/SRS836005/SRX862585/SRR1783551/SRR1783551.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASVIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASVIN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASVIN-09A-01D	DNA	EFO	SRS835916	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASVIN-09A-01D IL9234 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9234	SRX862493	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASVIN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASVIN-09A-01D IL9234 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASVIN-09A-01D_ATGAGC.bam	SRR1783338	@dbgap@:reads/SRP011999/SRS835916/SRX862493/SRR1783338/SRR1783338.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASVIN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASVIN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASVIN-10A-01D	DNA	EFO	SRS835914	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASVIN-10A-01D IL9235 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL9235	SRX862494	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASVIN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASVIN-10A-01D IL9235 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASVIN-10A-01D_ATTCCT.bam	SRR1783339	@dbgap@:reads/SRP011999/SRS835914/SRX862494/SRR1783339/SRR1783339.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASVPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASVPZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASVPZ-09A-01D	DNA	EFO	SRS1080764	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASVPZ-09A-01D SJTALL002035_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	62.5686	SJTALL002035_D1_EXCAP_1	SRX1274509		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASVPZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASVPZ-09A-01D SJTALL002035_D1_EXCAP_1 run	sequencing assay	EFO	165	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002035_D1-TARGET-10-PASVPZ-09A-01.bam	SRR2485660	@dbgap@:reads/SRP011999/SRS1080764/SRX1274509/SRR2485660/SRR2485660.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASVPZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASVPZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASVPZ-10A-01D	DNA	EFO	SRS1080763	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASVPZ-10A-01D SJTALL002035_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	154	53.7326	SJTALL002035_G1_EXCAP_1	SRX1274510		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASVPZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASVPZ-10A-01D SJTALL002035_G1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002035_G1-TARGET-10-PASVPZ-10A-01.bam	SRR2485661	@dbgap@:reads/SRP011999/SRS1080763/SRX1274510/SRR2485661/SRR2485661.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWFN-09A-01D	DNA	EFO	SRS1080762	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASWFN-09A-01D SJTALL002039_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	101.085	SJTALL002039_D1_EXCAP_1	SRX1274511		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASWFN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASWFN-09A-01D SJTALL002039_D1_EXCAP_1 run	sequencing assay	EFO	166	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002039_D1-TARGET-10-PASWFN-09A-01.bam	SRR2485662	@dbgap@:reads/SRP011999/SRS1080762/SRX1274511/SRR2485662/SRR2485662.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWFN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWFN-10A-01D	DNA	EFO	SRS1080761	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASWFN-10A-01D SJTALL002039_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	52.0949	SJTALL002039_G1_EXCAP_1	SRX1274512		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASWFN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASWFN-10A-01D SJTALL002039_G1_EXCAP_1 run	sequencing assay	EFO	164	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002039_G1-TARGET-10-PASWFN-10A-01.bam	SRR2485663	@dbgap@:reads/SRP011999/SRS1080761/SRX1274512/SRR2485663/SRR2485663.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWNU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWNU-09A-01D	DNA	EFO	SRS891208	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASWNU-09A-01D IL11588 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL11588	SRX975780	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASWNU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASWNU-09A-01D IL11588 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASWNU-09A-01D_GTGAAA.bam	SRR1949679	@dbgap@:reads/SRP011999/SRS891208/SRX975780/SRR1949679/SRR1949679.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWNU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWNU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWNU-10A-01D	DNA	EFO	SRS891199	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASWNU-10A-01D IL11589 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL11589	SRX975792	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASWNU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASWNU-10A-01D IL11589 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASWNU-10A-01D_GTGGCC.bam	SRR1949680	@dbgap@:reads/SRP011999/SRS891199/SRX975792/SRR1949680/SRR1949680.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWSR-09A-01D	DNA	EFO	SRS836016	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASWSR-09A-01D IL9767 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL9767	SRX862592	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASWSR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASWSR-09A-01D IL9767 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASWSR-09A-01D_TATAAT.bam	SRR1783552	@dbgap@:reads/SRP011999/SRS836016/SRX862592/SRR1783552/SRR1783552.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWSR-10A-01D	DNA	EFO	SRS836017	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASWSR-10A-01D IL9768 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9768	SRX862593	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASWSR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASWSR-10A-01D IL9768 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASWSR-10A-01D_TCATTC.bam	SRR1783553	@dbgap@:reads/SRP011999/SRS836017/SRX862593/SRR1783553/SRR1783553.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWXB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWXB-09A-01D	DNA	EFO	SRS835696	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASWXB-09A-01D IL10031 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10031	SRX862272	P5_B15	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASWXB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASWXB-09A-01D IL10031 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASWXB-09A-01D_ACTGAT.bam	SRR1783340	@dbgap@:reads/SRP011999/SRS835696/SRX862272/SRR1783340/SRR1783340.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWXB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWXB-10A-01D	DNA	EFO	SRS835695	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASWXB-10A-01D IL10032 library	PAIRED	GENOMIC	WXS	Hybrid Selection	178	26.7	IL10032	SRX862273	P5_B15	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASWXB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASWXB-10A-01D IL10032 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASWXB-10A-01D_ATGAGC.bam	SRR1783341	@dbgap@:reads/SRP011999/SRS835695/SRX862273/SRR1783341/SRR1783341.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWXZ-09A-01D	DNA	EFO	SRS1080760	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASWXZ-09A-01D SJTALL001636_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	154	52.4543	SJTALL001636_D1_EXCAP_1	SRX1274513		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASWXZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PASWXZ-09A-01D SJTALL001636_D1_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001636_D1-TARGET-10-PASWXZ-09A-01.bam	SRR2485664	@dbgap@:reads/SRP011999/SRS1080760/SRX1274513/SRR2485664/SRR2485664.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWXZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWXZ-10A-01D	DNA	EFO	SRS1080759	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASWXZ-10A-01D SJTALL001636_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	149	43.9859	SJTALL001636_G1_EXCAP_1	SRX1274514		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASWXZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PASWXZ-10A-01D SJTALL001636_G1_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001636_G1-TARGET-10-PASWXZ-10A-01.bam	SRR2485665	@dbgap@:reads/SRP011999/SRS1080759/SRX1274514/SRR2485665/SRR2485665.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWZJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWZJ-09A-01D	DNA	EFO	SRS835982	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASWZJ-09A-01D IL9727 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL9727	SRX862554	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASWZJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASWZJ-09A-01D IL9727 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASWZJ-09A-01D_TGACCA.bam	SRR1783554	@dbgap@:reads/SRP011999/SRS835982/SRX862554/SRR1783554/SRR1783554.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASWZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASWZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWZJ-10A-01D	DNA	EFO	SRS835977	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASWZJ-10A-01D IL9728 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL9728	SRX862555	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASWZJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASWZJ-10A-01D IL9728 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASWZJ-10A-01D_ACAGTG.bam	SRR1783555	@dbgap@:reads/SRP011999/SRS835977/SRX862555/SRR1783555/SRR1783555.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXIL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXIL-09A-01D	DNA	EFO	SRS1080758	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASXIL-09A-01D SJTALL002051_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	56.9007	SJTALL002051_D1_EXCAP_1	SRX1274515		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASXIL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASXIL-09A-01D SJTALL002051_D1_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002051_D1-TARGET-10-PASXIL-09A-01.bam	SRR2485666	@dbgap@:reads/SRP011999/SRS1080758/SRX1274515/SRR2485666/SRR2485666.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXIL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXIL-10A-01D	DNA	EFO	SRS1080709	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASXIL-10A-01D SJTALL002051_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	173	68.5587	SJTALL002051_G1_EXCAP_1	SRX1274516		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASXIL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-27	TARGET-10-PASXIL-10A-01D SJTALL002051_G1_EXCAP_1 run	sequencing assay	EFO	181	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002051_G1-TARGET-10-PASXIL-10A-01.bam	SRR2485667	@dbgap@:reads/SRP011999/SRS1080709/SRX1274516/SRR2485667/SRR2485667.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXLT-09A-01D	DNA	EFO	SRS835986	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASXLT-09A-01D IL9735 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL9735	SRX862562	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASXLT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASXLT-09A-01D IL9735 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASXLT-09A-01D_CTTGTA.bam	SRR1783556	@dbgap@:reads/SRP011999/SRS835986/SRX862562/SRR1783556/SRR1783556.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXLT-10A-01D	DNA	EFO	SRS835988	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASXLT-10A-01D IL9736 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9736	SRX862563	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASXLT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASXLT-10A-01D IL9736 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASXLT-10A-01D_AGTCAA.bam	SRR1783557	@dbgap@:reads/SRP011999/SRS835988/SRX862563/SRR1783557/SRR1783557.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXLZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXLZ-09A-01D	DNA	EFO	SRS1080710	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASXLZ-09A-01D SJTALL001639_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	164	66.58	SJTALL001639_D1_EXCAP_1	SRX1274517		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASXLZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PASXLZ-09A-01D SJTALL001639_D1_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001639_D1-TARGET-10-PASXLZ-09A-01.bam	SRR2485668	@dbgap@:reads/SRP011999/SRS1080710/SRX1274517/SRR2485668/SRR2485668.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXLZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXLZ-10A-01D	DNA	EFO	SRS1080757	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASXLZ-10A-01D SJTALL001639_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	163	59.0906	SJTALL001639_G1_EXCAP_1	SRX1274518		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASXLZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PASXLZ-10A-01D SJTALL001639_G1_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001639_G1-TARGET-10-PASXLZ-10A-01.bam	SRR2485669	@dbgap@:reads/SRP011999/SRS1080757/SRX1274518/SRR2485669/SRR2485669.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXMF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXMF-09A-01D	DNA	EFO	SRS1080756	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASXMF-09A-01D SJTALL002055_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	155	54.4433	SJTALL002055_D1_EXCAP_1	SRX1274519		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASXMF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PASXMF-09A-01D SJTALL002055_D1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002055_D1-TARGET-10-PASXMF-09A-01D.bam	SRR2485670	@dbgap@:reads/SRP011999/SRS1080756/SRX1274519/SRR2485670/SRR2485670.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXMF-10A-01D	DNA	EFO	SRS1080755	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PASXMF-10A-01D SJTALL002055_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	144	39.3575	SJTALL002055_G1_EXCAP_1	SRX1274520		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PASXMF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PASXMF-10A-01D SJTALL002055_G1_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002055_G1-TARGET-10-PASXMF-10A-01D.bam	SRR2485671	@dbgap@:reads/SRP011999/SRS1080755/SRX1274520/SRR2485671/SRR2485671.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXSI-09A-01D	DNA	EFO	SRS835992	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASXSI-09A-01D IL9743 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL9743	SRX862569	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASXSI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASXSI-09A-01D IL9743 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASXSI-09A-01D_GTGGCC.bam	SRR1783558	@dbgap@:reads/SRP011999/SRS835992/SRX862569/SRR1783558/SRR1783558.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXSI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXSI-09A-01D	DNA	EFO	SRS835992	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASXSI-09A-01D IL9743 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL9743	SRX862569	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASXSI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASXSI-09A-01D IL9743 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASXSI-09A-01D_GTGGCC_supp.bam	SRR2990564	@dbgap@:reads/SRP011999/SRS835992/SRX862569/SRR2990564/SRR2990564.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXSI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXSI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXSI-10A-01D	DNA	EFO	SRS835994	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASXSI-10A-01D IL9744 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9744	SRX862570	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASXSI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASXSI-10A-01D IL9744 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASXSI-10A-01D_GTTTCG.bam	SRR1783559	@dbgap@:reads/SRP011999/SRS835994/SRX862570/SRR1783559/SRR1783559.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXUC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXUC-09A-01D	DNA	EFO	SRS835929	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASXUC-09A-01D IL9623 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9623	SRX862501	P5_B16	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASXUC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASXUC-09A-01D IL9623 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASXUC-09A-01D_ATGAGC.bam	SRR1783342	@dbgap@:reads/SRP011999/SRS835929/SRX862501/SRR1783342/SRR1783342.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXUC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXUC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXUC-14A-01D	DNA	EFO	SRS835924	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASXUC-14A-01D IL9624 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9624	SRX862502	P5_B16	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASXUC-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASXUC-14A-01D IL9624 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASXUC-14A-01D_ATTCCT.bam	SRR1783343	@dbgap@:reads/SRP011999/SRS835924/SRX862502/SRR1783343/SRR1783343.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXUU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXUU-09A-01D	DNA	EFO	SRS836006	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASXUU-09A-01D IL9751 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9751	SRX862576	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASXUU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASXUU-09A-01D IL9751 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASXUU-09A-01D_CAAAAG.bam	SRR1783560	@dbgap@:reads/SRP011999/SRS836006/SRX862576/SRR1783560/SRR1783560.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASXUU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASXUU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXUU-10A-01D	DNA	EFO	SRS836007	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASXUU-10A-01D IL9752 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9752	SRX862577	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASXUU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASXUU-10A-01D IL9752 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASXUU-10A-01D_CAACTA.bam	SRR1783561	@dbgap@:reads/SRP011999/SRS836007/SRX862577/SRR1783561/SRR1783561.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYAJ-09A-01D	DNA	EFO	SRS835931	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYAJ-09A-01D IL9633 library	PAIRED	GENOMIC	WXS	Hybrid Selection	171	26.2	IL9633	SRX862509	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYAJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYAJ-09A-01D IL9633 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYAJ-09A-01D_TAGCTT.bam	SRR1783344	@dbgap@:reads/SRP011999/SRS835931/SRX862509/SRR1783344/SRR1783344.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYAJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYAJ-14A-01D	DNA	EFO	SRS835933	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYAJ-14A-01D IL9634 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9634	SRX862510	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYAJ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYAJ-14A-01D IL9634 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYAJ-14A-01D_GGCTAC.bam	SRR1783345	@dbgap@:reads/SRP011999/SRS835933/SRX862510/SRR1783345/SRR1783345.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYCN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYCN-09A-01D	DNA	EFO	SRS891252	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYCN-09A-01D IL11563 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11563	SRX975740	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYCN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYCN-09A-01D IL11563 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYCN-09A-01D_GATCAG.bam	SRR1949681	@dbgap@:reads/SRP011999/SRS891252/SRX975740/SRR1949681/SRR1949681.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYCN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYCN-10A-01D	DNA	EFO	SRS891254	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYCN-10A-01D IL11567 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11567	SRX975738	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYCN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYCN-10A-01D IL11567 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYCN-10A-01D_AGTCAA.bam	SRR1949682	@dbgap@:reads/SRP011999/SRS891254/SRX975738/SRR1949682/SRR1949682.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYCN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYCN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYCN-10A-01D	DNA	EFO	SRS891254	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYCN-10A-01D IL11567 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11567	SRX975738	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYCN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYCN-10A-01D IL11567 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYCN-10A-01D_AGTCAA_supp.bam	SRR2990565	@dbgap@:reads/SRP011999/SRS891254/SRX975738/SRR2990565/SRR2990565.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYHN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYHN-09A-01D	DNA	EFO	SRS835980	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYHN-09A-01D IL9731 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL9731	SRX862558	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYHN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYHN-09A-01D IL9731 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYHN-09A-01D_ACTTGA.bam	SRR1783562	@dbgap@:reads/SRP011999/SRS835980/SRX862558/SRR1783562/SRR1783562.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYHN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYHN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYHN-10A-01D	DNA	EFO	SRS835983	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYHN-10A-01D IL9732 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9732	SRX862559	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYHN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYHN-10A-01D IL9732 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYHN-10A-01D_GATCAG.bam	SRR1783563	@dbgap@:reads/SRP011999/SRS835983/SRX862559/SRR1783563/SRR1783563.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYIS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYIS-09A-01D	DNA	EFO	SRS835989	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYIS-09A-01D IL9739 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL9739	SRX862565	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYIS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYIS-09A-01D IL9739 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYIS-09A-01D_CCGTCC.bam	SRR1783564	@dbgap@:reads/SRP011999/SRS835989/SRX862565/SRR1783564/SRR1783564.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYIS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYIS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYIS-10A-01D	DNA	EFO	SRS835990	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYIS-10A-01D IL9740 library	PAIRED	GENOMIC	WXS	Hybrid Selection	175	26.5	IL9740	SRX862566	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYIS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYIS-10A-01D IL9740 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYIS-10A-01D_GTAGAG.bam	SRR1783565	@dbgap@:reads/SRP011999/SRS835990/SRX862566/SRR1783565/SRR1783565.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYSJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYSJ-09A-01D	DNA	EFO	SRS835998	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYSJ-09A-01D IL9747 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL9747	SRX862572	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYSJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYSJ-09A-01D IL9747 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYSJ-09A-01D_GGTAGC.bam	SRR1783566	@dbgap@:reads/SRP011999/SRS835998/SRX862572/SRR1783566/SRR1783566.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYSJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYSJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYSJ-10A-01D	DNA	EFO	SRS836003	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYSJ-10A-01D IL9748 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9748	SRX862573	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYSJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYSJ-10A-01D IL9748 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYSJ-10A-01D_ACTGAT.bam	SRR1783567	@dbgap@:reads/SRP011999/SRS836003/SRX862573/SRR1783567/SRR1783567.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYWF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYWF-03A-01D	DNA	EFO	SRS835940	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYWF-03A-01D IL9641 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9641	SRX862517	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYWF-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYWF-03A-01D IL9641 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYWF-03A-01D_GTCCGC.bam	SRR1783346	@dbgap@:reads/SRP011999/SRS835940/SRX862517/SRR1783346/SRR1783346.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASYWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASYWF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYWF-10A-01D	DNA	EFO	SRS835947	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASYWF-10A-01D IL9642 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9642	SRX862518	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASYWF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASYWF-10A-01D IL9642 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASYWF-10A-01D_GTGAAA.bam	SRR1783347	@dbgap@:reads/SRP011999/SRS835947/SRX862518/SRR1783347/SRR1783347.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASZEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZEW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASZEW-09A-01D	DNA	EFO	SRS836001	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASZEW-09A-01D IL9755 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9755	SRX862580	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASZEW-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASZEW-09A-01D IL9755 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASZEW-09A-01D_CACTCA.bam	SRR1783568	@dbgap@:reads/SRP011999/SRS836001/SRX862580/SRR1783568/SRR1783568.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASZEW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZEW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASZEW-10A-01D	DNA	EFO	SRS836013	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASZEW-10A-01D IL9756 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL9756	SRX862581	P9_B19	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASZEW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASZEW-10A-01D IL9756 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASZEW-10A-01D_CAGGCG.bam	SRR1783569	@dbgap@:reads/SRP011999/SRS836013/SRX862581/SRR1783569/SRR1783569.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASZIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASZIY-09A-01D	DNA	EFO	SRS835945	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASZIY-09A-01D IL9649 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL9649	SRX862524	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASZIY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASZIY-09A-01D IL9649 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASZIY-09A-01D_ATGAGC.bam	SRR1783348	@dbgap@:reads/SRP011999/SRS835945/SRX862524/SRR1783348/SRR1783348.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASZIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZIY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASZIY-10A-01D	DNA	EFO	SRS835949	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASZIY-10A-01D IL9650 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL9650	SRX862525	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASZIY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASZIY-10A-01D IL9650 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASZIY-10A-01D_ATTCCT.bam	SRR1783349	@dbgap@:reads/SRP011999/SRS835949/SRX862525/SRR1783349/SRR1783349.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASZJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZJW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASZJW-03A-01D	DNA	EFO	SRS836010	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASZJW-03A-01D IL9763 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL9763	SRX862588	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASZJW-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASZJW-03A-01D IL9763 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASZJW-03A-01D_CTCAGA.bam	SRR1783570	@dbgap@:reads/SRP011999/SRS836010/SRX862588/SRR1783570/SRR1783570.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PASZJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PASZJW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASZJW-10A-01D	DNA	EFO	SRS836012	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PASZJW-10A-01D IL9764 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9764	SRX862589	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PASZJW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PASZJW-10A-01D IL9764 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PASZJW-10A-01D_GACGAC.bam	SRR1783571	@dbgap@:reads/SRP011999/SRS836012/SRX862589/SRR1783571/SRR1783571.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATALJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATALJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATALJ-09A-01D	DNA	EFO	SRS836019	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATALJ-09A-01D IL9771 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9771	SRX862595	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATALJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATALJ-09A-01D IL9771 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATALJ-09A-01D_TCGGCA.bam	SRR1783572	@dbgap@:reads/SRP011999/SRS836019/SRX862595/SRR1783572/SRR1783572.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATALJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATALJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATALJ-10A-01D	DNA	EFO	SRS836018	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATALJ-10A-01D IL9772 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	26.5	IL9772	SRX862596	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATALJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATALJ-10A-01D IL9772 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATALJ-10A-01D_ATCACG.bam	SRR1783573	@dbgap@:reads/SRP011999/SRS836018/SRX862596/SRR1783573/SRR1783573.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATAXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATAXS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAXS-09A-01D	DNA	EFO	SRS1080754	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATAXS-09A-01D SJTALL002075_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	46.927	SJTALL002075_D1_EXCAP_1	SRX1274521		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATAXS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATAXS-09A-01D SJTALL002075_D1_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002075_D1-TARGET-10-PATAXS-09A-01D.bam	SRR2485672	@dbgap@:reads/SRP011999/SRS1080754/SRX1274521/SRR2485672/SRR2485672.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATAXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATAXS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAXS-10A-01D	DNA	EFO	SRS1080753	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATAXS-10A-01D SJTALL002075_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	53.9992	SJTALL002075_G1_EXCAP_1	SRX1274522		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATAXS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATAXS-10A-01D SJTALL002075_G1_EXCAP_1 run	sequencing assay	EFO	177	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002075_G1-TARGET-10-PATAXS-10A-01D.bam	SRR2485673	@dbgap@:reads/SRP011999/SRS1080753/SRX1274522/SRR2485673/SRR2485673.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATAYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATAYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAYT-09A-01D	DNA	EFO	SRS891198	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATAYT-09A-01D IL11590 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11590	SRX975793	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATAYT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATAYT-09A-01D IL11590 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATAYT-09A-01D_GTTTCG.bam	SRR1949683	@dbgap@:reads/SRP011999/SRS891198/SRX975793/SRR1949683/SRR1949683.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATAYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATAYT-10B	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAYT-10B-01D	DNA	EFO	SRS891217	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATAYT-10B-01D IL11591 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11591	SRX975775	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATAYT-10B-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATAYT-10B-01D IL11591 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATAYT-10B-01D_CGTACG.bam	SRR1949684	@dbgap@:reads/SRP011999/SRS891217/SRX975775/SRR1949684/SRR1949684.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBDJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBDJ-09A-01D	DNA	EFO	SRS836028	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBDJ-09A-01D IL9779 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL9779	SRX862603	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBDJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBDJ-09A-01D IL9779 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBDJ-09A-01D_GATCAG.bam	SRR1783574	@dbgap@:reads/SRP011999/SRS836028/SRX862603/SRR1783574/SRR1783574.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBDJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBDJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBDJ-10A-01D	DNA	EFO	SRS836027	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBDJ-10A-01D IL9780 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9780	SRX862604	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBDJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBDJ-10A-01D IL9780 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBDJ-10A-01D_TAGCTT.bam	SRR1783575	@dbgap@:reads/SRP011999/SRS836027/SRX862604/SRR1783575/SRR1783575.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBDK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBDK-09A-01D	DNA	EFO	SRS836035	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBDK-09A-01D IL9787 library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	28.9	IL9787	SRX862611	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBDK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBDK-09A-01D IL9787 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBDK-09A-01D_GTAGAG.bam	SRR1783576	@dbgap@:reads/SRP011999/SRS836035/SRX862611/SRR1783576/SRR1783576.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBDK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBDK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBDK-10A-01D	DNA	EFO	SRS836036	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBDK-10A-01D IL9788 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9788	SRX862612	P9_B20	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBDK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBDK-10A-01D IL9788 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBDK-10A-01D_GTCCGC.bam	SRR1783577	@dbgap@:reads/SRP011999/SRS836036/SRX862612/SRR1783577/SRR1783577.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBGC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBGC-09A-01D	DNA	EFO	SRS891253	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBGC-09A-01D IL11568 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11568	SRX975739	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBGC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBGC-09A-01D IL11568 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBGC-09A-01D_AGTTCC.bam	SRR1949685	@dbgap@:reads/SRP011999/SRS891253/SRX975739/SRR1949685/SRR1949685.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBGC-10A-01D	DNA	EFO	SRS891189	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBGC-10A-01D IL11603 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL11603	SRX975802	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBGC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBGC-10A-01D IL11603 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBGC-10A-01D_CATGGC.bam	SRR1949686	@dbgap@:reads/SRP011999/SRS891189/SRX975802/SRR1949686/SRR1949686.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBNT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBNT-09A-01D	DNA	EFO	SRS891135	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBNT-09A-01D IL11623 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11623	SRX975860	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBNT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBNT-09A-01D IL11623 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBNT-09A-01D_GCCAAT.bam	SRR1949687	@dbgap@:reads/SRP011999/SRS891135/SRX975860/SRR1949687/SRR1949687.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBNT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBNT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBNT-10A-01D	DNA	EFO	SRS891159	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBNT-10A-01D IL11627 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL11627	SRX975833	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBNT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBNT-10A-01D IL11627 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBNT-10A-01D_TAGCTT.bam	SRR1949688	@dbgap@:reads/SRP011999/SRS891159/SRX975833/SRR1949688/SRR1949688.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBRV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBRV-09A-01D	DNA	EFO	SRS891168	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBRV-09A-01D IL11631 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11631	SRX975823	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBRV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBRV-09A-01D IL11631 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBRV-09A-01D_AGTTCC.bam	SRR1949689	@dbgap@:reads/SRP011999/SRS891168/SRX975823/SRR1949689/SRR1949689.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBRV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBRV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBRV-10A-01D	DNA	EFO	SRS891259	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBRV-10A-01D IL11556 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL11556	SRX975732	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBRV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBRV-10A-01D IL11556 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBRV-10A-01D_CGATGT.bam	SRR1949690	@dbgap@:reads/SRP011999/SRS891259/SRX975732/SRR1949690/SRR1949690.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBTX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBTX-09A-01D	DNA	EFO	SRS891256	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBTX-09A-01D IL11560 library	PAIRED	GENOMIC	WXS	Hybrid Selection	205	28.6	IL11560	SRX975734	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBTX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBTX-09A-01D IL11560 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBTX-09A-01D_GCCAAT.bam	SRR1949691	@dbgap@:reads/SRP011999/SRS891256/SRX975734/SRR1949691/SRR1949691.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBTX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBTX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBTX-10A-01D	DNA	EFO	SRS891250	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBTX-10A-01D IL11564 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL11564	SRX975742	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBTX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBTX-10A-01D IL11564 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBTX-10A-01D_TAGCTT.bam	SRR1949692	@dbgap@:reads/SRP011999/SRS891250/SRX975742/SRR1949692/SRR1949692.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBYK-09A-01D	DNA	EFO	SRS880704	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBYK-09A-01D IL10291 library	PAIRED	GENOMIC	WXS	Hybrid Selection	219	29.6	IL10291	SRX896758	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBYK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBYK-09A-01D IL10291 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBYK-09A-01D_ATCACG.bam	SRR1825412	@dbgap@:reads/SRP011999/SRS880704/SRX896758/SRR1825412/SRR1825412.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBYK-10A-01D	DNA	EFO	SRS945066	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBYK-10A-01D IL10292 library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	29.3	IL10292	SRX1037930	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBYK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBYK-10A-01D IL10292 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBYK-10A-01D_CGATGT.bam	SRR2039533	@dbgap@:reads/SRP011999/SRS945066/SRX1037930/SRR2039533/SRR2039533.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATBYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATBYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATBYK-10A-01D	DNA	EFO	SRS945066	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATBYK-10A-01D IL10292 library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	29.3	IL10292	SRX1037930	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATBYK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATBYK-10A-01D IL10292 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATBYK-10A-01D_CGATGT_supp.bam	SRR2990566	@dbgap@:reads/SRP011999/SRS945066/SRX1037930/SRR2990566/SRR2990566.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCDM-09A-01D	DNA	EFO	SRS880662	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCDM-09A-01D IL10299 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL10299	SRX896802	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCDM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCDM-09A-01D IL10299 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCDM-09A-01D_GATCAG.bam	SRR1825413	@dbgap@:reads/SRP011999/SRS880662/SRX896802/SRR1825413/SRR1825413.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCDM-10A-01D	DNA	EFO	SRS880534	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCDM-10A-01D IL10300 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10300	SRX896929	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCDM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCDM-10A-01D IL10300 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCDM-10A-01D_TAGCTT.bam	SRR1825414	@dbgap@:reads/SRP011999/SRS880534/SRX896929/SRR1825414/SRR1825414.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCDM-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCDM-40A-01D	DNA	EFO	SRS1124478	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCDM-40A-01D IL15668 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL15668	SRX1360698	P18r	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample SJALL015989_R1-TARGET-10-PATCDM in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCDM-40A-01D IL15668 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	SJALL015989_R1-TARGET-10-PATCDM_CGGAAT_L008.bam	SRR2747629	@dbgap@:reads/SRP011999/SRS1124478/SRX1360698/SRR2747629/SRR2747629.sra	2	HG19						
TARGET-10-PATCDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCDZ-09A-01D	DNA	EFO	SRS880637	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCDZ-09A-01D IL10307 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL10307	SRX896825	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCDZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCDZ-09A-01D IL10307 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCDZ-09A-01D_GTAGAG.bam	SRR1825415	@dbgap@:reads/SRP011999/SRS880637/SRX896825/SRR1825415/SRR1825415.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCDZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCDZ-10A-01D	DNA	EFO	SRS880550	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCDZ-10A-01D IL10308 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL10308	SRX896913	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCDZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCDZ-10A-01D IL10308 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCDZ-10A-01D_GTCCGC.bam	SRR1825416	@dbgap@:reads/SRP011999/SRS880550/SRX896913/SRR1825416/SRR1825416.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCKV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCKV-09A-01D	DNA	EFO	SRS835955	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCKV-09A-01D IL9700 library	PAIRED	GENOMIC	WXS	Hybrid Selection	177	26.6	IL9700	SRX862532	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCKV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCKV-09A-01D IL9700 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCKV-09A-01D_ATCACG.bam	SRR1783350	@dbgap@:reads/SRP011999/SRS835955/SRX862532/SRR1783350/SRR1783350.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCKV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCKV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCKV-10A-01D	DNA	EFO	SRS835956	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCKV-10A-01D IL9701 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL9701	SRX862533	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCKV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCKV-10A-01D IL9701 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCKV-10A-01D_CGATGT.bam	SRR1783351	@dbgap@:reads/SRP011999/SRS835956/SRX862533/SRR1783351/SRR1783351.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCNI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCNI-09A-01D	DNA	EFO	SRS880475	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCNI-09A-01D IL10315 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL10315	SRX896989	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCNI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCNI-09A-01D IL10315 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCNI-09A-01D_ACTGAT.bam	SRR1825417	@dbgap@:reads/SRP011999/SRS880475/SRX896989/SRR1825417/SRR1825417.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCNI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCNI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCNI-10A-01D	DNA	EFO	SRS880611	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCNI-10A-01D IL10316 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL10316	SRX896852	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCNI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCNI-10A-01D IL10316 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCNI-10A-01D_ATGAGC.bam	SRR1825418	@dbgap@:reads/SRP011999/SRS880611/SRX896852/SRR1825418/SRR1825418.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCUK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCUK-09A-01D	DNA	EFO	SRS835961	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCUK-09A-01D IL9708 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL9708	SRX862540	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCUK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCUK-09A-01D IL9708 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCUK-09A-01D_TAGCTT.bam	SRR1783352	@dbgap@:reads/SRP011999/SRS835961/SRX862540/SRR1783352/SRR1783352.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCUK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCUK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCUK-14A-01D	DNA	EFO	SRS835968	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCUK-14A-01D IL9709 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL9709	SRX862541	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCUK-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCUK-14A-01D IL9709 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCUK-14A-01D_GGCTAC.bam	SRR1783353	@dbgap@:reads/SRP011999/SRS835968/SRX862541/SRR1783353/SRR1783353.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCZN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCZN-09A-01D	DNA	EFO	SRS880687	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCZN-09A-01D IL10356 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10356	SRX896773	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCZN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCZN-09A-01D IL10356 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCZN-09A-01D_ATCACG.bam	SRR1825419	@dbgap@:reads/SRP011999/SRS880687/SRX896773/SRR1825419/SRR1825419.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATCZN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATCZN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCZN-10A-01D	DNA	EFO	SRS880668	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATCZN-10A-01D IL10357 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10357	SRX896794	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATCZN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATCZN-10A-01D IL10357 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATCZN-10A-01D_CGATGT.bam	SRR1825420	@dbgap@:reads/SRP011999/SRS880668/SRX896794/SRR1825420/SRR1825420.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDBU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDBU-09A-01D	DNA	EFO	SRS880718	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDBU-09A-01D IL10364 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10364	SRX896744	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDBU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDBU-09A-01D IL10364 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDBU-09A-01D_GATCAG.bam	SRR1825421	@dbgap@:reads/SRP011999/SRS880718/SRX896744/SRR1825421/SRR1825421.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDBU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDBU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDBU-10A-01D	DNA	EFO	SRS880602	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDBU-10A-01D IL10365 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL10365	SRX896861	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDBU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDBU-10A-01D IL10365 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDBU-10A-01D_TAGCTT.bam	SRR1825422	@dbgap@:reads/SRP011999/SRS880602/SRX896861/SRR1825422/SRR1825422.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDDZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDDZ-09A-01D	DNA	EFO	SRS880650	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDDZ-09A-01D IL10370 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10370	SRX896812	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDDZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDDZ-09A-01D IL10370 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDDZ-09A-01D_GTAGAG.bam	SRR1825423	@dbgap@:reads/SRP011999/SRS880650/SRX896812/SRR1825423/SRR1825423.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDDZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDDZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDDZ-10A-01D	DNA	EFO	SRS880521	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDDZ-10A-01D IL10371 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10371	SRX896943	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDDZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDDZ-10A-01D IL10371 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDDZ-10A-01D_GTCCGC.bam	SRR1825424	@dbgap@:reads/SRP011999/SRS880521/SRX896943/SRR1825424/SRR1825424.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDFE-09A-01D	DNA	EFO	SRS880594	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDFE-09A-01D IL10378 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10378	SRX896869	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDFE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDFE-09A-01D IL10378 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDFE-09A-01D_ACTGAT.bam	SRR1825425	@dbgap@:reads/SRP011999/SRS880594/SRX896869/SRR1825425/SRR1825425.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDFE-10A-01D	DNA	EFO	SRS880528	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDFE-10A-01D IL10379 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10379	SRX896935	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDFE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDFE-10A-01D IL10379 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDFE-10A-01D_ATGAGC.bam	SRR1825426	@dbgap@:reads/SRP011999/SRS880528/SRX896935/SRR1825426/SRR1825426.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDGZ-09A-01D	DNA	EFO	SRS835974	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDGZ-09A-01D IL9716 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL9716	SRX862545	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDGZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDGZ-09A-01D IL9716 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDGZ-09A-01D_GTCCGC.bam	SRR1783354	@dbgap@:reads/SRP011999/SRS835974/SRX862545/SRR1783354/SRR1783354.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDGZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDGZ-14A-01D	DNA	EFO	SRS835966	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDGZ-14A-01D IL9717 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9717	SRX862546	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDGZ-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDGZ-14A-01D IL9717 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDGZ-14A-01D_GTGAAA.bam	SRR1783355	@dbgap@:reads/SRP011999/SRS835966/SRX862546/SRR1783355/SRR1783355.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDKT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDKT-09A-01D	DNA	EFO	SRS880708	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDKT-09A-01D IL10386 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10386	SRX896754	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDKT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDKT-09A-01D IL10386 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDKT-09A-01D_CAGGCG.bam	SRR1825427	@dbgap@:reads/SRP011999/SRS880708/SRX896754/SRR1825427/SRR1825427.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDKT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDKT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDKT-10A-01D	DNA	EFO	SRS880641	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDKT-10A-01D IL10387 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10387	SRX896821	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDKT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDKT-10A-01D IL10387 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDKT-10A-01D_CATGGC.bam	SRR1825428	@dbgap@:reads/SRP011999/SRS880641/SRX896821/SRR1825428/SRR1825428.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDLG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDLG-09A-01D	DNA	EFO	SRS945079	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDLG-09A-01D IL12230 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL12230	SRX1037917	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDLG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDLG-09A-01D IL12230 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDLG-09A-01D_ATGTCA.bam	SRR2039526	@dbgap@:reads/SRP011999/SRS945079/SRX1037917/SRR2039526/SRR2039526.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDLG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDLG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDLG-10A-01D	DNA	EFO	SRS945080	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDLG-10A-01D IL12232 library	PAIRED	GENOMIC	WXS	Hybrid Selection	227	30.1	IL12232	SRX1037916	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDLG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDLG-10A-01D IL12232 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDLG-10A-01D_GTAGAG.bam	SRR2039527	@dbgap@:reads/SRP011999/SRS945080/SRX1037916/SRR2039527/SRR2039527.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDMN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDMN-09A-01D	DNA	EFO	SRS880693	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDMN-09A-01D IL10400 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL10400	SRX896770	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDMN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDMN-09A-01D IL10400 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDMN-09A-01D_ATCACG.bam	SRR1825429	@dbgap@:reads/SRP011999/SRS880693/SRX896770/SRR1825429/SRR1825429.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDMN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDMN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDMN-10A-01D	DNA	EFO	SRS880613	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATDMN-10A-01D IL10401 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10401	SRX896850	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATDMN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATDMN-10A-01D IL10401 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATDMN-10A-01D_CGATGT.bam	SRR1825430	@dbgap@:reads/SRP011999/SRS880613/SRX896850/SRR1825430/SRR1825430.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDRC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDRC-03A-01D	DNA	EFO	SRS1080752	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATDRC-03A-01D SJTALL002091_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	154	51.2735	SJTALL002091_D1_EXCAP_1	SRX1274523		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATDRC-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATDRC-03A-01D SJTALL002091_D1_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002091_D1-TARGET-10-PATDRC-03A-01D.bam	SRR2485674	@dbgap@:reads/SRP011999/SRS1080752/SRX1274523/SRR2485674/SRR2485674.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATDRC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATDRC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATDRC-10A-01D	DNA	EFO	SRS1080751	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATDRC-10A-01D SJTALL002091_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	173	63.8251	SJTALL002091_G1_EXCAP_1	SRX1274524		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATDRC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATDRC-10A-01D SJTALL002091_G1_EXCAP_1 run	sequencing assay	EFO	185	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002091_G1-TARGET-10-PATDRC-10A-01D.bam	SRR2485675	@dbgap@:reads/SRP011999/SRS1080751/SRX1274524/SRR2485675/SRR2485675.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEAK-09A-01D	DNA	EFO	SRS1080750	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATEAK-09A-01D SJTALL001677_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	167	63.1594	SJTALL001677_D1_EXCAP_1	SRX1274525		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATEAK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PATEAK-09A-01D SJTALL001677_D1_EXCAP_1 run	sequencing assay	EFO	179	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001677_D1-TARGET-10-PATEAK-09A-01.bam	SRR2485676	@dbgap@:reads/SRP011999/SRS1080750/SRX1274525/SRR2485676/SRR2485676.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEAK-10A-01D	DNA	EFO	SRS1080749	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATEAK-10A-01D SJTALL001677_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	163	62.0765	SJTALL001677_G1_EXCAP_1	SRX1274526		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATEAK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-24	TARGET-10-PATEAK-10A-01D SJTALL001677_G1_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL001677_G1-TARGET-10-PATEAK-10A-01.bam	SRR2485677	@dbgap@:reads/SRP011999/SRS1080749/SRX1274526/SRR2485677/SRR2485677.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEFF-09A-01D	DNA	EFO	SRS835899	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEFF-09A-01D IL9212 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9212	SRX862471	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEFF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEFF-09A-01D IL9212 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEFF-09A-01D_TGACCA.bam	SRR1783356	@dbgap@:reads/SRP011999/SRS835899/SRX862471/SRR1783356/SRR1783356.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEFF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEFF-14A-01D	DNA	EFO	SRS835893	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEFF-14A-01D IL9213 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9213	SRX862472	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEFF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEFF-14A-01D IL9213 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEFF-14A-01D_ACAGTG.bam	SRR1783357	@dbgap@:reads/SRP011999/SRS835893/SRX862472/SRR1783357/SRR1783357.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEHZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEHZ-03A-01D	DNA	EFO	SRS835902	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEHZ-03A-01D IL9220 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9220	SRX862479	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEHZ-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEHZ-03A-01D IL9220 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEHZ-03A-01D_CTTGTA.bam	SRR1783358	@dbgap@:reads/SRP011999/SRS835902/SRX862479/SRR1783358/SRR1783358.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEHZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEHZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEHZ-10A-01D	DNA	EFO	SRS835905	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEHZ-10A-01D IL9221 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL9221	SRX862480	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEHZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEHZ-10A-01D IL9221 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEHZ-10A-01D_AGTCAA.bam	SRR1783359	@dbgap@:reads/SRP011999/SRS835905/SRX862480/SRR1783359/SRR1783359.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEIT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEIT-09A-01D	DNA	EFO	SRS835917	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEIT-09A-01D IL9228 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9228	SRX862487	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEIT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEIT-09A-01D IL9228 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEIT-09A-01D_GTGGCC.bam	SRR1783360	@dbgap@:reads/SRP011999/SRS835917/SRX862487/SRR1783360/SRR1783360.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEIT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEIT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEIT-14A-01D	DNA	EFO	SRS835910	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEIT-14A-01D IL9229 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9229	SRX862488	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEIT-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEIT-14A-01D IL9229 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEIT-14A-01D_GTTTCG.bam	SRR1783361	@dbgap@:reads/SRP011999/SRS835910/SRX862488/SRR1783361/SRR1783361.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEMI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEMI-09A-01D	DNA	EFO	SRS880597	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEMI-09A-01D IL10408 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL10408	SRX896866	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEMI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEMI-09A-01D IL10408 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEMI-09A-01D_GATCAG.bam	SRR1825431	@dbgap@:reads/SRP011999/SRS880597/SRX896866/SRR1825431/SRR1825431.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEMI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEMI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEMI-10A-01D	DNA	EFO	SRS880653	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEMI-10A-01D IL10409 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10409	SRX896809	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEMI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEMI-10A-01D IL10409 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEMI-10A-01D_TAGCTT.bam	SRR1825432	@dbgap@:reads/SRP011999/SRS880653/SRX896809/SRR1825432/SRR1825432.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATENL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATENL-04B	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATENL-04B-01D	DNA	EFO	SRS1124479	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATENL-04B-01D IL15669 library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	29.1	IL15669	SRX1360697	P18r	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample SJALL015659_R1-TARGET-10-PATENL-04B-01 in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATENL-04B-01D IL15669 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	SJALL015659_R1-TARGET-10-PATENL-04B-01_CTAGCT_L008.bam	SRR2747628	@dbgap@:reads/SRP011999/SRS1124479/SRX1360697/SRR2747628/SRR2747628.sra	2	HG19						
TARGET-10-PATENL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATENL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATENL-09A-01D	DNA	EFO	SRS835915	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATENL-09A-01D IL9236 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9236	SRX862495	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATENL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATENL-09A-01D IL9236 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATENL-09A-01D_CAAAAG.bam	SRR1783362	@dbgap@:reads/SRP011999/SRS835915/SRX862495/SRR1783362/SRR1783362.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATENL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATENL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATENL-10A-01D	DNA	EFO	SRS835928	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATENL-10A-01D IL9237 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL9237	SRX862496	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATENL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATENL-10A-01D IL9237 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATENL-10A-01D_CAACTA.bam	SRR1783363	@dbgap@:reads/SRP011999/SRS835928/SRX862496/SRR1783363/SRR1783363.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEVL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVL-09A-01D	DNA	EFO	SRS880695	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEVL-09A-01D IL10293 library	PAIRED	GENOMIC	WXS	Hybrid Selection	176	26.5	IL10293	SRX896767	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEVL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEVL-09A-01D IL10293 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEVL-09A-01D_TTAGGC.bam	SRR1825433	@dbgap@:reads/SRP011999/SRS880695/SRX896767/SRR1825433/SRR1825433.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEVL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEVL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVL-10A-01D	DNA	EFO	SRS945083	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEVL-10A-01D IL12219 library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	28.8	IL12219	SRX1037912	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEVL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEVL-10A-01D IL12219 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEVL-10A-01D_TGACCA.bam	SRR2039528	@dbgap@:reads/SRP011999/SRS945083/SRX1037912/SRR2039528/SRR2039528.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEYS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEYS-09A-01D	DNA	EFO	SRS880563	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEYS-09A-01D IL10301 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10301	SRX896900	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEYS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEYS-09A-01D IL10301 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEYS-09A-01D_GGCTAC.bam	SRR1825434	@dbgap@:reads/SRP011999/SRS880563/SRX896900/SRR1825434/SRR1825434.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATEYS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATEYS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEYS-10A-01D	DNA	EFO	SRS880542	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATEYS-10A-01D IL10302 library	PAIRED	GENOMIC	WXS	Hybrid Selection	231	30.4	IL10302	SRX896921	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATEYS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATEYS-10A-01D IL10302 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATEYS-10A-01D_CTTGTA.bam	SRR1825435	@dbgap@:reads/SRP011999/SRS880542/SRX896921/SRR1825435/SRR1825435.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFJD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFJD-09A-01D	DNA	EFO	SRS891219	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFJD-09A-01D IL11592 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL11592	SRX975773	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFJD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFJD-09A-01D IL11592 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFJD-09A-01D_GAGTGG.bam	SRR1949693	@dbgap@:reads/SRP011999/SRS891219/SRX975773/SRR1949693/SRR1949693.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFJD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFJD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFJD-14A-01D	DNA	EFO	SRS891243	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFJD-14A-01D IL11593 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL11593	SRX975748	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFJD-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFJD-14A-01D IL11593 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFJD-14A-01D_GGTAGC.bam	SRR1949694	@dbgap@:reads/SRP011999/SRS891243/SRX975748/SRR1949694/SRR1949694.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFJP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFJP-09A-01D	DNA	EFO	SRS880551	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFJP-09A-01D IL10309 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10309	SRX896912	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFJP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFJP-09A-01D IL10309 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFJP-09A-01D_GTGAAA.bam	SRR1825436	@dbgap@:reads/SRP011999/SRS880551/SRX896912/SRR1825436/SRR1825436.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFJP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFJP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFJP-10A-01D	DNA	EFO	SRS880546	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFJP-10A-01D IL10310 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10310	SRX896917	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFJP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFJP-10A-01D IL10310 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFJP-10A-01D_GTGGCC.bam	SRR1825437	@dbgap@:reads/SRP011999/SRS880546/SRX896917/SRR1825437/SRR1825437.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFRM-09A-01D	DNA	EFO	SRS880538	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFRM-09A-01D IL10317 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10317	SRX896925	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFRM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFRM-09A-01D IL10317 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFRM-09A-01D_ATTCCT.bam	SRR1825438	@dbgap@:reads/SRP011999/SRS880538/SRX896925/SRR1825438/SRR1825438.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFRM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFRM-10A-01D	DNA	EFO	SRS945081	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFRM-10A-01D IL12226 library	PAIRED	GENOMIC	WXS	Hybrid Selection	219	29.6	IL12226	SRX1037914	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFRM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFRM-10A-01D IL12226 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFRM-10A-01D_GGCTAC.bam	SRR2039529	@dbgap@:reads/SRP011999/SRS945081/SRX1037914/SRR2039529/SRR2039529.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFVG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFVG-09A-01D	DNA	EFO	SRS835698	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFVG-09A-01D IL10033 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10033	SRX862274	P5_B15	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFVG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFVG-09A-01D IL10033 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFVG-09A-01D_ATTCCT.bam	SRR1783364	@dbgap@:reads/SRP011999/SRS835698/SRX862274/SRR1783364/SRR1783364.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFVG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFVG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFVG-10A-01D	DNA	EFO	SRS835697	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFVG-10A-01D IL10034 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10034	SRX862275	P5_B15	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFVG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFVG-10A-01D IL10034 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFVG-10A-01D_CAAAAG.bam	SRR1783365	@dbgap@:reads/SRP011999/SRS835697/SRX862275/SRR1783365/SRR1783365.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFWF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFWF-09A-01D	DNA	EFO	SRS880689	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFWF-09A-01D IL10358 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10358	SRX896775	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFWF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFWF-09A-01D IL10358 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFWF-09A-01D_TTAGGC.bam	SRR1825439	@dbgap@:reads/SRP011999/SRS880689/SRX896775/SRR1825439/SRR1825439.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFWF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFWF-10A-01D	DNA	EFO	SRS880590	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFWF-10A-01D IL10359 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10359	SRX896873	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFWF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFWF-10A-01D IL10359 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFWF-10A-01D_TGACCA.bam	SRR1825440	@dbgap@:reads/SRP011999/SRS880590/SRX896873/SRR1825440/SRR1825440.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFYZ-09A-01D	DNA	EFO	SRS880544	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFYZ-09A-01D IL10366 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10366	SRX896919	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFYZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFYZ-09A-01D IL10366 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFYZ-09A-01D_GGCTAC.bam	SRR1825441	@dbgap@:reads/SRP011999/SRS880544/SRX896919/SRR1825441/SRR1825441.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATFYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATFYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATFYZ-10A-01D	DNA	EFO	SRS880579	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATFYZ-10A-01D IL10367 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10367	SRX896884	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATFYZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATFYZ-10A-01D IL10367 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATFYZ-10A-01D_CTTGTA.bam	SRR1825442	@dbgap@:reads/SRP011999/SRS880579/SRX896884/SRR1825442/SRR1825442.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGBY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGBY-09A-01D	DNA	EFO	SRS880596	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGBY-09A-01D IL10372 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10372	SRX896867	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGBY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGBY-09A-01D IL10372 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGBY-09A-01D_GTGAAA.bam	SRR1825443	@dbgap@:reads/SRP011999/SRS880596/SRX896867/SRR1825443/SRR1825443.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGBY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGBY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGBY-10A-01D	DNA	EFO	SRS880537	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGBY-10A-01D IL10373 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10373	SRX896926	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGBY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGBY-10A-01D IL10373 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGBY-10A-01D_GTGGCC.bam	SRR1825444	@dbgap@:reads/SRP011999/SRS880537/SRX896926/SRR1825444/SRR1825444.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGKE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGKE-09A-01D	DNA	EFO	SRS835925	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGKE-09A-01D IL9625 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9625	SRX862503	P5_B16	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGKE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGKE-09A-01D IL9625 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGKE-09A-01D_CAAAAG.bam	SRR1783366	@dbgap@:reads/SRP011999/SRS835925/SRX862503/SRR1783366/SRR1783366.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGKE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGKE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGKE-10A-01D	DNA	EFO	SRS835926	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGKE-10A-01D IL9626 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9626	SRX862504	P5_B16	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGKE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGKE-10A-01D IL9626 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGKE-10A-01D_CAACTA.bam	SRR1783367	@dbgap@:reads/SRP011999/SRS835926/SRX862504/SRR1783367/SRR1783367.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGLV-09A-01D	DNA	EFO	SRS880691	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGLV-09A-01D IL10380 library	PAIRED	GENOMIC	WXS	Hybrid Selection	227	30.1	IL10380	SRX896771	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGLV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGLV-09A-01D IL10380 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGLV-09A-01D_ATTCCT.bam	SRR1825445	@dbgap@:reads/SRP011999/SRS880691/SRX896771/SRR1825445/SRR1825445.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGLV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGLV-10A-01D	DNA	EFO	SRS880529	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGLV-10A-01D IL10381 library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	28.3	IL10381	SRX896934	P10_B26	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGLV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGLV-10A-01D IL10381 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGLV-10A-01D_CAAAAG.bam	SRR1825446	@dbgap@:reads/SRP011999/SRS880529/SRX896934/SRR1825446/SRR1825446.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGMP-09A-01D	DNA	EFO	SRS880535	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGMP-09A-01D IL10388 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10388	SRX896928	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGMP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGMP-09A-01D IL10388 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGMP-09A-01D_CATTTT.bam	SRR1825447	@dbgap@:reads/SRP011999/SRS880535/SRX896928/SRR1825447/SRR1825447.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGMP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGMP-10A-01D	DNA	EFO	SRS880539	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGMP-10A-01D IL10389 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL10389	SRX896924	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGMP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGMP-10A-01D IL10389 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGMP-10A-01D_CCAACA.bam	SRR1825448	@dbgap@:reads/SRP011999/SRS880539/SRX896924/SRR1825448/SRR1825448.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGVX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGVX-09A-01D	DNA	EFO	SRS880557	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGVX-09A-01D IL10394 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10394	SRX896906	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGVX-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGVX-09A-01D IL10394 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGVX-09A-01D_TACAGC.bam	SRR1825449	@dbgap@:reads/SRP011999/SRS880557/SRX896906/SRR1825449/SRR1825449.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGVX-10A-01D	DNA	EFO	SRS880574	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGVX-10A-01D IL10395 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10395	SRX896889	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGVX-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGVX-10A-01D IL10395 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGVX-10A-01D_TATAAT.bam	SRR1825450	@dbgap@:reads/SRP011999/SRS880574/SRX896889/SRR1825450/SRR1825450.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGWP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGWP-09A-01D	DNA	EFO	SRS880571	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGWP-09A-01D IL10402 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10402	SRX896892	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGWP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGWP-09A-01D IL10402 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGWP-09A-01D_TTAGGC.bam	SRR1825451	@dbgap@:reads/SRP011999/SRS880571/SRX896892/SRR1825451/SRR1825451.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGWP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGWP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGWP-10A-01D	DNA	EFO	SRS880604	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGWP-10A-01D IL10403 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL10403	SRX896860	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGWP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGWP-10A-01D IL10403 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGWP-10A-01D_TGACCA.bam	SRR1825452	@dbgap@:reads/SRP011999/SRS880604/SRX896860/SRR1825452/SRR1825452.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGXS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGXS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGXS-09A-01D	DNA	EFO	SRS880536	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGXS-09A-01D IL10410 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10410	SRX896927	P10_B27	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGXS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGXS-09A-01D IL10410 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGXS-09A-01D_GGCTAC.bam	SRR1825453	@dbgap@:reads/SRP011999/SRS880536/SRX896927/SRR1825453/SRR1825453.sra	2	HG19						
TARGET-10-PATGYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGYH-09A-01D	DNA	EFO	SRS880530	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGYH-09A-01D IL10295 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10295	SRX896933	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGYH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGYH-09A-01D IL10295 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGYH-09A-01D_ACAGTG.bam	SRR1825454	@dbgap@:reads/SRP011999/SRS880530/SRX896933/SRR1825454/SRR1825454.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGYH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGYH-14A-01D	DNA	EFO	SRS880697	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGYH-14A-01D IL10296 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10296	SRX896764	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGYH-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGYH-14A-01D IL10296 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGYH-14A-01D_GCCAAT.bam	SRR1825455	@dbgap@:reads/SRP011999/SRS880697/SRX896764/SRR1825455/SRR1825455.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGZA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGZA-09A-01D	DNA	EFO	SRS891244	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGZA-09A-01D IL11594 library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	29.2	IL11594	SRX975749	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGZA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGZA-09A-01D IL11594 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGZA-09A-01D_ACTGAT.bam	SRR1949695	@dbgap@:reads/SRP011999/SRS891244/SRX975749/SRR1949695/SRR1949695.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATGZA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATGZA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATGZA-10A-01D	DNA	EFO	SRS891225	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATGZA-10A-01D IL11595 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL11595	SRX975766	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATGZA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATGZA-10A-01D IL11595 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATGZA-10A-01D_ATGAGC.bam	SRR1949696	@dbgap@:reads/SRP011999/SRS891225/SRX975766/SRR1949696/SRR1949696.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHBG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHBG-09A-01D	DNA	EFO	SRS880493	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATHBG-09A-01D IL10303 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10303	SRX896970	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATHBG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATHBG-09A-01D IL10303 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATHBG-09A-01D_AGTCAA.bam	SRR1825456	@dbgap@:reads/SRP011999/SRS880493/SRX896970/SRR1825456/SRR1825456.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHBG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHBG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHBG-10A-01D	DNA	EFO	SRS880570	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATHBG-10A-01D IL10304 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10304	SRX896893	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATHBG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATHBG-10A-01D IL10304 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATHBG-10A-01D_AGTTCC.bam	SRR1825457	@dbgap@:reads/SRP011999/SRS880570/SRX896893/SRR1825457/SRR1825457.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHFE-09A-01D	DNA	EFO	SRS880616	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATHFE-09A-01D IL10311 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10311	SRX896845	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATHFE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATHFE-09A-01D IL10311 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATHFE-09A-01D_GTTTCG.bam	SRR1825458	@dbgap@:reads/SRP011999/SRS880616/SRX896845/SRR1825458/SRR1825458.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHFE-10A-01D	DNA	EFO	SRS880665	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATHFE-10A-01D IL10312 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10312	SRX896798	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATHFE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATHFE-10A-01D IL10312 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATHFE-10A-01D_CGTACG.bam	SRR1825459	@dbgap@:reads/SRP011999/SRS880665/SRX896798/SRR1825459/SRR1825459.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHGY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHGY-09A-01D	DNA	EFO	SRS880575	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATHGY-09A-01D IL10319 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10319	SRX896888	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATHGY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATHGY-09A-01D IL10319 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATHGY-09A-01D_CAACTA.bam	SRR1825460	@dbgap@:reads/SRP011999/SRS880575/SRX896888/SRR1825460/SRR1825460.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHGY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHGY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHGY-14A-01D	DNA	EFO	SRS880622	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATHGY-14A-01D IL10320 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL10320	SRX896841	P10_B25	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATHGY-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATHGY-14A-01D IL10320 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATHGY-14A-01D_CACCGG.bam	SRR1825461	@dbgap@:reads/SRP011999/SRS880622/SRX896841/SRR1825461/SRR1825461.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHJF-09A-01D	DNA	EFO	SRS1080748	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATHJF-09A-01D SJTALL002072_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	173	68.1025	SJTALL002072_D1_EXCAP_1	SRX1274527		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATHJF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATHJF-09A-01D SJTALL002072_D1_EXCAP_1 run	sequencing assay	EFO	181	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002072_D1-TARGET-10-PATHJF-09A-01D.bam	SRR2485678	@dbgap@:reads/SRP011999/SRS1080748/SRX1274527/SRR2485678/SRR2485678.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHJF-14A-01D	DNA	EFO	SRS1080747	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATHJF-14A-01D SJTALL002072_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	147	43.616	SJTALL002072_G1_EXCAP_1	SRX1274528		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATHJF-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATHJF-14A-01D SJTALL002072_G1_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002072_G1-TARGET-10-PATHJF-14A-01D.bam	SRR2485679	@dbgap@:reads/SRP011999/SRS1080747/SRX1274528/SRR2485679/SRR2485679.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHRF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHRF-09A-01D	DNA	EFO	SRS835939	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATHRF-09A-01D IL9635 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9635	SRX862511	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATHRF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATHRF-09A-01D IL9635 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATHRF-09A-01D_CTTGTA.bam	SRR1783368	@dbgap@:reads/SRP011999/SRS835939/SRX862511/SRR1783368/SRR1783368.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHRF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHRF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHRF-10A-01D	DNA	EFO	SRS835941	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATHRF-10A-01D IL9636 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9636	SRX862512	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATHRF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATHRF-10A-01D IL9636 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATHRF-10A-01D_AGTCAA.bam	SRR1783369	@dbgap@:reads/SRP011999/SRS835941/SRX862512/SRR1783369/SRR1783369.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHWV-09A-01D	DNA	EFO	SRS1080746	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATHWV-09A-01D SJTALL002080_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	147	45.3052	SJTALL002080_D1_EXCAP_1	SRX1274529		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATHWV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATHWV-09A-01D SJTALL002080_D1_EXCAP_1 run	sequencing assay	EFO	166	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002080_D1-TARGET-10-PATHWV-09A-01D.bam	SRR2485680	@dbgap@:reads/SRP011999/SRS1080746/SRX1274529/SRR2485680/SRR2485680.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATHWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATHWV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATHWV-10A-01D	DNA	EFO	SRS1080745	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATHWV-10A-01D SJTALL002080_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	154	53.887	SJTALL002080_G1_EXCAP_1	SRX1274530		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATHWV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATHWV-10A-01D SJTALL002080_G1_EXCAP_1 run	sequencing assay	EFO	167	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002080_G1-TARGET-10-PATHWV-10A-01D.bam	SRR2485681	@dbgap@:reads/SRP011999/SRS1080745/SRX1274530/SRR2485681/SRR2485681.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATIBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATIBE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATIBE-09A-01D	DNA	EFO	SRS835948	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATIBE-09A-01D IL9643 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9643	SRX862519	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATIBE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATIBE-09A-01D IL9643 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATIBE-09A-01D_GTGGCC.bam	SRR1783370	@dbgap@:reads/SRP011999/SRS835948/SRX862519/SRR1783370/SRR1783370.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATIBE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATIBE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATIBE-10A-01D	DNA	EFO	SRS835943	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATIBE-10A-01D IL9644 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9644	SRX862520	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATIBE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATIBE-10A-01D IL9644 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATIBE-10A-01D_GTTTCG.bam	SRR1783371	@dbgap@:reads/SRP011999/SRS835943/SRX862520/SRR1783371/SRR1783371.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATIKN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATIKN-03A-01D	DNA	EFO	SRS835950	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATIKN-03A-01D IL9651 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL9651	SRX862526	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATIKN-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATIKN-03A-01D IL9651 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATIKN-03A-01D_CAAAAG.bam	SRR1783372	@dbgap@:reads/SRP011999/SRS835950/SRX862526/SRR1783372/SRR1783372.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATIKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATIKN-10A-01D	DNA	EFO	SRS835960	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATIKN-10A-01D IL9652 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL9652	SRX862527	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATIKN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATIKN-10A-01D IL9652 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATIKN-10A-01D_CAACTA.bam	SRR1783373	@dbgap@:reads/SRP011999/SRS835960/SRX862527/SRR1783373/SRR1783373.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATITB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATITB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATITB-09A-01D	DNA	EFO	SRS835965	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATITB-09A-01D IL9702 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9702	SRX862534	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATITB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATITB-09A-01D IL9702 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATITB-09A-01D_TGACCA.bam	SRR1783374	@dbgap@:reads/SRP011999/SRS835965/SRX862534/SRR1783374/SRR1783374.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATITB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATITB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATITB-09A-01D	DNA	EFO	SRS835965	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATITB-09A-01D IL9702 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9702	SRX862534	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATITB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATITB-09A-01D IL9702 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATITB-09A-01D_TGACCA_supp.bam	SRR2990567	@dbgap@:reads/SRP011999/SRS835965/SRX862534/SRR2990567/SRR2990567.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATITB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATITB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATITB-10A-01D	DNA	EFO	SRS835957	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATITB-10A-01D IL9703 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL9703	SRX862535	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATITB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATITB-10A-01D IL9703 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATITB-10A-01D_ACAGTG.bam	SRR1783375	@dbgap@:reads/SRP011999/SRS835957/SRX862535/SRR1783375/SRR1783375.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATITY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATITY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATITY-09A-01D	DNA	EFO	SRS891257	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATITY-09A-01D IL11557 library	PAIRED	GENOMIC	WXS	Hybrid Selection	199	28.2	IL11557	SRX975736	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATITY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATITY-09A-01D IL11557 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATITY-09A-01D_TTAGGC.bam	SRR1949697	@dbgap@:reads/SRP011999/SRS891257/SRX975736/SRR1949697/SRR1949697.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATITY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATITY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATITY-10A-01D	DNA	EFO	SRS835973	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATITY-10A-01D IL9711 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL9711	SRX862542	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATITY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATITY-10A-01D IL9711 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATITY-10A-01D_AGTCAA.bam	SRR1783376	@dbgap@:reads/SRP011999/SRS835973/SRX862542/SRR1783376/SRR1783376.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATJBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJBC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATJBC-09A-01D	DNA	EFO	SRS835970	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATJBC-09A-01D IL9718 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9718	SRX862547	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATJBC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATJBC-09A-01D IL9718 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATJBC-09A-01D_GTGGCC.bam	SRR1783377	@dbgap@:reads/SRP011999/SRS835970/SRX862547/SRR1783377/SRR1783377.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATJBC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJBC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATJBC-10A-01D	DNA	EFO	SRS835969	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATJBC-10A-01D IL9719 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9719	SRX862548	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATJBC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATJBC-10A-01D IL9719 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATJBC-10A-01D_GTTTCG.bam	SRR1783378	@dbgap@:reads/SRP011999/SRS835969/SRX862548/SRR1783378/SRR1783378.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATJLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJLT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATJLT-09A-01D	DNA	EFO	SRS835895	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATJLT-09A-01D IL9214 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9214	SRX862473	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATJLT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATJLT-09A-01D IL9214 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATJLT-09A-01D_GCCAAT.bam	SRR1783379	@dbgap@:reads/SRP011999/SRS835895/SRX862473/SRR1783379/SRR1783379.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATJLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATJLT-10A-01D	DNA	EFO	SRS835900	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATJLT-10A-01D IL9215 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9215	SRX862474	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATJLT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATJLT-10A-01D IL9215 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATJLT-10A-01D_CAGATC.bam	SRR1783380	@dbgap@:reads/SRP011999/SRS835900/SRX862474/SRR1783380/SRR1783380.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATJZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJZK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATJZK-09A-01D	DNA	EFO	SRS835903	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATJZK-09A-01D IL9222 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL9222	SRX862481	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATJZK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATJZK-09A-01D IL9222 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATJZK-09A-01D_AGTTCC.bam	SRR1783381	@dbgap@:reads/SRP011999/SRS835903/SRX862481/SRR1783381/SRR1783381.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATJZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATJZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATJZK-10A-01D	DNA	EFO	SRS835904	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATJZK-10A-01D IL9223 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9223	SRX862482	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATJZK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATJZK-10A-01D IL9223 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATJZK-10A-01D_ATGTCA.bam	SRR1783382	@dbgap@:reads/SRP011999/SRS835904/SRX862482/SRR1783382/SRR1783382.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATKGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATKGP-09A-01D	DNA	EFO	SRS835911	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATKGP-09A-01D IL9230 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL9230	SRX862489	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATKGP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATKGP-09A-01D IL9230 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATKGP-09A-01D_CGTACG.bam	SRR1783383	@dbgap@:reads/SRP011999/SRS835911/SRX862489/SRR1783383/SRR1783383.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATKGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATKGP-10A-01D	DNA	EFO	SRS835921	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATKGP-10A-01D IL9231 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9231	SRX862490	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATKGP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATKGP-10A-01D IL9231 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATKGP-10A-01D_GAGTGG.bam	SRR1783384	@dbgap@:reads/SRP011999/SRS835921/SRX862490/SRR1783384/SRR1783384.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATKVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATKVD-09A-01D	DNA	EFO	SRS835918	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATKVD-09A-01D IL9238 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9238	SRX862497	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATKVD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATKVD-09A-01D IL9238 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATKVD-09A-01D_CACCGG.bam	SRR1783385	@dbgap@:reads/SRP011999/SRS835918/SRX862497/SRR1783385/SRR1783385.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATKVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATKVD-10A-01D	DNA	EFO	SRS835919	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATKVD-10A-01D IL9239 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9239	SRX862498	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATKVD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATKVD-10A-01D IL9239 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATKVD-10A-01D_CACGAT.bam	SRR1783386	@dbgap@:reads/SRP011999/SRS835919/SRX862498/SRR1783386/SRR1783386.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATKWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKWU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATKWU-09A-01D	DNA	EFO	SRS835701	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATKWU-09A-01D IL10035 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10035	SRX862276	P5_B15	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATKWU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATKWU-09A-01D IL10035 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATKWU-09A-01D_CAACTA.bam	SRR1783387	@dbgap@:reads/SRP011999/SRS835701/SRX862276/SRR1783387/SRR1783387.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATKWU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKWU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATKWU-10A-01D	DNA	EFO	SRS835699	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATKWU-10A-01D IL10036 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10036	SRX862277	P5_B15	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATKWU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATKWU-10A-01D IL10036 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATKWU-10A-01D_CACCGG.bam	SRR1783388	@dbgap@:reads/SRP011999/SRS835699/SRX862277/SRR1783388/SRR1783388.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATKYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKYI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATKYI-09A-01D	DNA	EFO	SRS891215	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATKYI-09A-01D IL11596 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11596	SRX975777	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATKYI-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATKYI-09A-01D IL11596 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATKYI-09A-01D_ATTCCT.bam	SRR1949698	@dbgap@:reads/SRP011999/SRS891215/SRX975777/SRR1949698/SRR1949698.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATKYI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATKYI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATKYI-10A-01D	DNA	EFO	SRS891205	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATKYI-10A-01D IL11597 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL11597	SRX975789	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATKYI-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATKYI-10A-01D IL11597 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATKYI-10A-01D_CAAAAG.bam	SRR1949699	@dbgap@:reads/SRP011999/SRS891205/SRX975789/SRR1949699/SRR1949699.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLGU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLGU-09A-01D	DNA	EFO	SRS1080744	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATLGU-09A-01D SJTALL002077_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	173	76.3105	SJTALL002077_D1_EXCAP_1	SRX1274531		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATLGU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATLGU-09A-01D SJTALL002077_D1_EXCAP_1 run	sequencing assay	EFO	165	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002077_D1-TARGET-10-PATLGU-09A-01D.bam	SRR2485682	@dbgap@:reads/SRP011999/SRS1080744/SRX1274531/SRR2485682/SRR2485682.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLGU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLGU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLGU-10A-01D	DNA	EFO	SRS1080743	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATLGU-10A-01D SJTALL002077_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	51.0108	SJTALL002077_G1_EXCAP_1	SRX1274532		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATLGU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATLGU-10A-01D SJTALL002077_G1_EXCAP_1 run	sequencing assay	EFO	180	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002077_G1-TARGET-10-PATLGU-10A-01D.bam	SRR2485683	@dbgap@:reads/SRP011999/SRS1080743/SRX1274532/SRR2485683/SRR2485683.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLHH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLHH-09A-01D	DNA	EFO	SRS835927	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLHH-09A-01D IL9627 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9627	SRX862505	P5_B16	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLHH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLHH-09A-01D IL9627 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLHH-09A-01D_CACCGG.bam	SRR1783389	@dbgap@:reads/SRP011999/SRS835927/SRX862505/SRR1783389/SRR1783389.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLHH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLHH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLHH-10A-01D	DNA	EFO	SRS835934	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLHH-10A-01D IL9628 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9628	SRX862506	P5_B16	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLHH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLHH-10A-01D IL9628 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLHH-10A-01D_CACGAT.bam	SRR1783390	@dbgap@:reads/SRP011999/SRS835934/SRX862506/SRR1783390/SRR1783390.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLHS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLHS-09A-01D	DNA	EFO	SRS835935	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLHS-09A-01D IL9637 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL9637	SRX862513	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLHS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLHS-09A-01D IL9637 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLHS-09A-01D_AGTTCC.bam	SRR1783391	@dbgap@:reads/SRP011999/SRS835935/SRX862513/SRR1783391/SRR1783391.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLHS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLHS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLHS-10A-01D	DNA	EFO	SRS835936	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLHS-10A-01D IL9638 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL9638	SRX862514	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLHS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLHS-10A-01D IL9638 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLHS-10A-01D_ATGTCA.bam	SRR1783392	@dbgap@:reads/SRP011999/SRS835936/SRX862514/SRR1783392/SRR1783392.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLMA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLMA-03A-01D	DNA	EFO	SRS1080742	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATLMA-03A-01D SJTALL002089_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	52.2	SJTALL002089_D1_EXCAP_1	SRX1274533		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATLMA-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATLMA-03A-01D SJTALL002089_D1_EXCAP_1 run	sequencing assay	EFO	160	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002089_D1-TARGET-10-PATLMA-03A-01D.bam	SRR2485684	@dbgap@:reads/SRP011999/SRS1080742/SRX1274533/SRR2485684/SRR2485684.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLMA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLMA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLMA-10A-01D	DNA	EFO	SRS1080741	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATLMA-10A-01D SJTALL002089_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	67.1726	SJTALL002089_G1_EXCAP_1	SRX1274534		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATLMA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATLMA-10A-01D SJTALL002089_G1_EXCAP_1 run	sequencing assay	EFO	164	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002089_G1-TARGET-10-PATLMA-10A-01D.bam	SRR2485685	@dbgap@:reads/SRP011999/SRS1080741/SRX1274534/SRR2485685/SRR2485685.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLNS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLNS-09A-01D	DNA	EFO	SRS835942	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLNS-09A-01D IL9645 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9645	SRX862521	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLNS-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLNS-09A-01D IL9645 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLNS-09A-01D_CGTACG.bam	SRR1783393	@dbgap@:reads/SRP011999/SRS835942/SRX862521/SRR1783393/SRR1783393.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLNS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLNS-10A-01D	DNA	EFO	SRS835946	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLNS-10A-01D IL9646 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL9646	SRX862522	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLNS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLNS-10A-01D IL9646 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLNS-10A-01D_GAGTGG.bam	SRR1783394	@dbgap@:reads/SRP011999/SRS835946/SRX862522/SRR1783394/SRR1783394.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLNZ-09A-01D	DNA	EFO	SRS835951	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLNZ-09A-01D IL9653 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9653	SRX862528	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLNZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLNZ-09A-01D IL9653 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLNZ-09A-01D_CACCGG.bam	SRR1783395	@dbgap@:reads/SRP011999/SRS835951/SRX862528/SRR1783395/SRR1783395.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLNZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLNZ-10A-01D	DNA	EFO	SRS835953	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLNZ-10A-01D IL9654 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL9654	SRX862529	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLNZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLNZ-10A-01D IL9654 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLNZ-10A-01D_CACGAT.bam	SRR1783396	@dbgap@:reads/SRP011999/SRS835953/SRX862529/SRR1783396/SRR1783396.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLPN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLPN-03A-01D	DNA	EFO	SRS835958	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLPN-03A-01D IL9704 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9704	SRX862536	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLPN-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLPN-03A-01D IL9704 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLPN-03A-01D_GCCAAT.bam	SRR1783397	@dbgap@:reads/SRP011999/SRS835958/SRX862536/SRR1783397/SRR1783397.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLPN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLPN-03A-01D	DNA	EFO	SRS835958	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLPN-03A-01D IL12239 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL12239	SRX1037915	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLPN-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLPN-03A-01D IL12239 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLPN-03A-01D_GGTAGC.bam	SRR2039530	@dbgap@:reads/SRP011999/SRS835958/SRX1037915/SRR2039530/SRR2039530.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLPN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLPN-10A-01D	DNA	EFO	SRS835967	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLPN-10A-01D IL9705 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL9705	SRX862537	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLPN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLPN-10A-01D IL9705 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLPN-10A-01D_CAGATC.bam	SRR1783398	@dbgap@:reads/SRP011999/SRS835967/SRX862537/SRR1783398/SRR1783398.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLRZ-09A-01D	DNA	EFO	SRS891249	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLRZ-09A-01D IL11561 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11561	SRX975741	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLRZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLRZ-09A-01D IL11561 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLRZ-09A-01D_CAGATC.bam	SRR1949700	@dbgap@:reads/SRP011999/SRS891249/SRX975741/SRR1949700/SRR1949700.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATLRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATLRZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATLRZ-10A-01D	DNA	EFO	SRS835964	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATLRZ-10A-01D IL9713 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9713	SRX862543	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATLRZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATLRZ-10A-01D IL9713 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATLRZ-10A-01D_ATGTCA.bam	SRR1783399	@dbgap@:reads/SRP011999/SRS835964/SRX862543/SRR1783399/SRR1783399.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMAF-09A-01D	DNA	EFO	SRS1080740	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATMAF-09A-01D SJTALL002109_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	151	50.3004	SJTALL002109_D1_EXCAP_1	SRX1274535		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATMAF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATMAF-09A-01D SJTALL002109_D1_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002109_D1-TARGET-10-PATMAF-09A-01D.bam	SRR2485686	@dbgap@:reads/SRP011999/SRS1080740/SRX1274535/SRR2485686/SRR2485686.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMAF-10A-01D	DNA	EFO	SRS1080739	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATMAF-10A-01D SJTALL002109_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	66.4595	SJTALL002109_G1_EXCAP_1	SRX1274536		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATMAF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATMAF-10A-01D SJTALL002109_G1_EXCAP_1 run	sequencing assay	EFO	164	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002109_G1-TARGET-10-PATMAF-10A-01D.bam	SRR2485687	@dbgap@:reads/SRP011999/SRS1080739/SRX1274536/SRR2485687/SRR2485687.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMRE-09A-01D	DNA	EFO	SRS891251	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATMRE-09A-01D IL11565 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11565	SRX975743	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATMRE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATMRE-09A-01D IL11565 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATMRE-09A-01D_GGCTAC.bam	SRR1949701	@dbgap@:reads/SRP011999/SRS891251/SRX975743/SRR1949701/SRR1949701.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMRE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMRE-09A-01D	DNA	EFO	SRS891251	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATMRE-09A-01D IL11565 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11565	SRX975743	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATMRE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATMRE-09A-01D IL11565 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATMRE-09A-01D_GGCTAC_supp.bam	SRR2990568	@dbgap@:reads/SRP011999/SRS891251/SRX975743/SRR2990568/SRR2990568.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMRE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMRE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMRE-10A-01D	DNA	EFO	SRS835971	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATMRE-10A-01D IL9721 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9721	SRX862549	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATMRE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATMRE-10A-01D IL9721 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATMRE-10A-01D_GAGTGG.bam	SRR1783400	@dbgap@:reads/SRP011999/SRS835971/SRX862549/SRR1783400/SRR1783400.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMTV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMTV-09A-01D	DNA	EFO	SRS835897	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATMTV-09A-01D IL9216 library	PAIRED	GENOMIC	WXS	Hybrid Selection	197	28.1	IL9216	SRX862475	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATMTV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATMTV-09A-01D IL9216 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATMTV-09A-01D_ACTTGA.bam	SRR1783401	@dbgap@:reads/SRP011999/SRS835897/SRX862475/SRR1783401/SRR1783401.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMTV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMTV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMTV-10A-01D	DNA	EFO	SRS835898	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATMTV-10A-01D IL9217 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9217	SRX862476	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATMTV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATMTV-10A-01D IL9217 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATMTV-10A-01D_GATCAG.bam	SRR1783402	@dbgap@:reads/SRP011999/SRS835898/SRX862476/SRR1783402/SRR1783402.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMVH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMVH-09A-01D	DNA	EFO	SRS835913	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATMVH-09A-01D IL9224 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9224	SRX862483	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATMVH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATMVH-09A-01D IL9224 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATMVH-09A-01D_CCGTCC.bam	SRR1783403	@dbgap@:reads/SRP011999/SRS835913/SRX862483/SRR1783403/SRR1783403.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMVH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMVH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMVH-10A-01D	DNA	EFO	SRS835907	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATMVH-10A-01D IL9225 library	PAIRED	GENOMIC	WXS	Hybrid Selection	203	28.5	IL9225	SRX862484	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATMVH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATMVH-10A-01D IL9225 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATMVH-10A-01D_GTAGAG.bam	SRR1783404	@dbgap@:reads/SRP011999/SRS835907/SRX862484/SRR1783404/SRR1783404.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMXN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMXN-09A-01D	DNA	EFO	SRS1080738	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATMXN-09A-01D SJTALL002078_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	61.3207	SJTALL002078_D1_EXCAP_1	SRX1274537		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATMXN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATMXN-09A-01D SJTALL002078_D1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002078_D1-TARGET-10-PATMXN-09A-01D.bam	SRR2485688	@dbgap@:reads/SRP011999/SRS1080738/SRX1274537/SRR2485688/SRR2485688.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMXN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMXN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMXN-10A-01D	DNA	EFO	SRS1080737	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATMXN-10A-01D SJTALL002078_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	66.628	SJTALL002078_G1_EXCAP_1	SRX1274538		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATMXN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATMXN-10A-01D SJTALL002078_G1_EXCAP_1 run	sequencing assay	EFO	172	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002078_G1-TARGET-10-PATMXN-10A-01D.bam	SRR2485689	@dbgap@:reads/SRP011999/SRS1080737/SRX1274538/SRR2485689/SRR2485689.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMYZ-09A-01D	DNA	EFO	SRS835923	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATMYZ-09A-01D IL9232 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL9232	SRX862491	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATMYZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATMYZ-09A-01D IL9232 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATMYZ-09A-01D_GGTAGC.bam	SRR1783405	@dbgap@:reads/SRP011999/SRS835923/SRX862491/SRR1783405/SRR1783405.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATMYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATMYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATMYZ-10A-01D	DNA	EFO	SRS835912	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATMYZ-10A-01D IL9233 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9233	SRX862492	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATMYZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATMYZ-10A-01D IL9233 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATMYZ-10A-01D_ACTGAT.bam	SRR1783406	@dbgap@:reads/SRP011999/SRS835912/SRX862492/SRR1783406/SRR1783406.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATNAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATNAM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATNAM-09A-01D	DNA	EFO	SRS835920	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATNAM-09A-01D IL9240 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9240	SRX862499	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATNAM-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATNAM-09A-01D IL9240 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATNAM-09A-01D_CACTCA.bam	SRR1783407	@dbgap@:reads/SRP011999/SRS835920/SRX862499/SRR1783407/SRR1783407.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATNAM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATNAM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATNAM-10A-01D	DNA	EFO	SRS835922	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATNAM-10A-01D IL9241 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL9241	SRX862500	P5_B14	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATNAM-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATNAM-10A-01D IL9241 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATNAM-10A-01D_CAGGCG.bam	SRR1783408	@dbgap@:reads/SRP011999/SRS835922/SRX862500/SRR1783408/SRR1783408.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATNIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATNIA-09A-01D	DNA	EFO	SRS835703	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATNIA-09A-01D IL10037 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10037	SRX862278	P5_B15	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATNIA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATNIA-09A-01D IL10037 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATNIA-09A-01D_CACGAT.bam	SRR1783409	@dbgap@:reads/SRP011999/SRS835703/SRX862278/SRR1783409/SRR1783409.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATNIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATNIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATNIA-10A-01D	DNA	EFO	SRS835702	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATNIA-10A-01D IL10038 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10038	SRX862279	P5_B15	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATNIA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATNIA-10A-01D IL10038 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATNIA-10A-01D_CACTCA.bam	SRR1783410	@dbgap@:reads/SRP011999/SRS835702/SRX862279/SRR1783410/SRR1783410.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATPDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATPDA-09A-01D	DNA	EFO	SRS835930	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATPDA-09A-01D IL9629 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9629	SRX862507	P5_B16	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATPDA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATPDA-09A-01D IL9629 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATPDA-09A-01D_CACTCA.bam	SRR1783411	@dbgap@:reads/SRP011999/SRS835930/SRX862507/SRR1783411/SRR1783411.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATPDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPDA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATPDA-10A-01D	DNA	EFO	SRS835932	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATPDA-10A-01D IL9630 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9630	SRX862508	P5_B16	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATPDA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATPDA-10A-01D IL9630 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATPDA-10A-01D_CAGGCG.bam	SRR1783412	@dbgap@:reads/SRP011999/SRS835932/SRX862508/SRR1783412/SRR1783412.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATPGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPGE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATPGE-09A-01D	DNA	EFO	SRS835937	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATPGE-09A-01D IL9639 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL9639	SRX862515	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATPGE-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATPGE-09A-01D IL9639 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATPGE-09A-01D_CCGTCC.bam	SRR1783413	@dbgap@:reads/SRP011999/SRS835937/SRX862515/SRR1783413/SRR1783413.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATPGE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPGE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATPGE-10A-01D	DNA	EFO	SRS835938	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATPGE-10A-01D IL9640 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9640	SRX862516	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATPGE-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATPGE-10A-01D IL9640 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATPGE-10A-01D_GTAGAG.bam	SRR1783414	@dbgap@:reads/SRP011999/SRS835938/SRX862516/SRR1783414/SRR1783414.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATPWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPWF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATPWF-03A-01D	DNA	EFO	SRS835944	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATPWF-03A-01D IL9647 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9647	SRX862523	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATPWF-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATPWF-03A-01D IL9647 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATPWF-03A-01D_GGTAGC.bam	SRR1783415	@dbgap@:reads/SRP011999/SRS835944/SRX862523/SRR1783415/SRR1783415.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATPWF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATPWF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATPWF-10A-01D	DNA	EFO	SRS890929	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATPWF-10A-01D IL11605 library	PAIRED	GENOMIC	WXS	Hybrid Selection	202	28.4	IL11605	SRX975846	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATPWF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATPWF-10A-01D IL11605 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATPWF-10A-01D_CCAACA.bam	SRR1949702	@dbgap@:reads/SRP011999/SRS890929/SRX975846/SRR1949702/SRR1949702.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRAB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRAB-09A-01D	DNA	EFO	SRS835952	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATRAB-09A-01D IL9655 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL9655	SRX862530	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATRAB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATRAB-09A-01D IL9655 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATRAB-09A-01D_CACTCA.bam	SRR1783416	@dbgap@:reads/SRP011999/SRS835952/SRX862530/SRR1783416/SRR1783416.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRAB-10A-01D	DNA	EFO	SRS835954	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATRAB-10A-01D IL9656 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9656	SRX862531	P5_B17	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATRAB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATRAB-10A-01D IL9656 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATRAB-10A-01D_CAGGCG.bam	SRR1783417	@dbgap@:reads/SRP011999/SRS835954/SRX862531/SRR1783417/SRR1783417.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRGV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRGV-09A-01D	DNA	EFO	SRS1080736	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATRGV-09A-01D SJTALL002110_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	64.141	SJTALL002110_D1_EXCAP_1	SRX1274539		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATRGV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATRGV-09A-01D SJTALL002110_D1_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002110_D1-TARGET-10-PATRGV-09A-01D.bam	SRR2485690	@dbgap@:reads/SRP011999/SRS1080736/SRX1274539/SRR2485690/SRR2485690.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRGV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRGV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRGV-10A-01D	DNA	EFO	SRS1080735	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATRGV-10A-01D SJTALL002110_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	132	28.7523	SJTALL002110_G1_EXCAP_1	SRX1274540		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATRGV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATRGV-10A-01D SJTALL002110_G1_EXCAP_1 run	sequencing assay	EFO	153	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002110_G1-TARGET-10-PATRGV-10A-01D.bam	SRR2485691	@dbgap@:reads/SRP011999/SRS1080735/SRX1274540/SRR2485691/SRR2485691.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRHL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRHL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRHL-09A-01D	DNA	EFO	SRS835959	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATRHL-09A-01D IL9706 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9706	SRX862538	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATRHL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATRHL-09A-01D IL9706 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATRHL-09A-01D_ACTTGA.bam	SRR1783418	@dbgap@:reads/SRP011999/SRS835959/SRX862538/SRR1783418/SRR1783418.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRHL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRHL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRHL-09A-01D	DNA	EFO	SRS835959	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATRHL-09A-01D IL9706 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL9706	SRX862538	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATRHL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATRHL-09A-01D IL9706 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATRHL-09A-01D_ACTTGA_supp.bam	SRR2990569	@dbgap@:reads/SRP011999/SRS835959/SRX862538/SRR2990569/SRR2990569.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRHL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRHL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRHL-10A-01D	DNA	EFO	SRS835962	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATRHL-10A-01D IL9707 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL9707	SRX862539	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATRHL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATRHL-10A-01D IL9707 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATRHL-10A-01D_GATCAG.bam	SRR1783419	@dbgap@:reads/SRP011999/SRS835962/SRX862539/SRR1783419/SRR1783419.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRNA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRNA-09A-01D	DNA	EFO	SRS1080734	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATRNA-09A-01D SJTALL002118_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	64.8607	SJTALL002118_D1_EXCAP_1	SRX1274541		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATRNA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATRNA-09A-01D SJTALL002118_D1_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002118_D1-TARGET-10-PATRNA-09A-01D.bam	SRR2485692	@dbgap@:reads/SRP011999/SRS1080734/SRX1274541/SRR2485692/SRR2485692.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRNA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRNA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRNA-10A-01D	DNA	EFO	SRS1080733	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATRNA-10A-01D SJTALL002118_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	67.2068	SJTALL002118_G1_EXCAP_1	SRX1274542		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATRNA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATRNA-10A-01D SJTALL002118_G1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002118_G1-TARGET-10-PATRNA-10A-01D.bam	SRR2485693	@dbgap@:reads/SRP011999/SRS1080733/SRX1274542/SRR2485693/SRR2485693.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRUN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRUN-09A-01D	DNA	EFO	SRS891239	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATRUN-09A-01D IL11600 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL11600	SRX975751	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATRUN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATRUN-09A-01D IL11600 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATRUN-09A-01D_CACGAT.bam	SRR1949703	@dbgap@:reads/SRP011999/SRS891239/SRX975751/SRR1949703/SRR1949703.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRUN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRUN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRUN-10A-01D	DNA	EFO	SRS835963	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATRUN-10A-01D IL9715 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL9715	SRX862544	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATRUN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATRUN-10A-01D IL9715 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATRUN-10A-01D_GTAGAG.bam	SRR1783420	@dbgap@:reads/SRP011999/SRS835963/SRX862544/SRR1783420/SRR1783420.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRXL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRXL-09A-01D	DNA	EFO	SRS835972	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATRXL-09A-01D IL9722 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9722	SRX862550	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATRXL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATRXL-09A-01D IL9722 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATRXL-09A-01D_GGTAGC.bam	SRR1783421	@dbgap@:reads/SRP011999/SRS835972/SRX862550/SRR1783421/SRR1783421.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATRXL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATRXL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRXL-10A-01D	DNA	EFO	SRS835981	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATRXL-10A-01D IL9723 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL9723	SRX862551	P5_B18	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATRXL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATRXL-10A-01D IL9723 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATRXL-10A-01D_ACTGAT.bam	SRR1783422	@dbgap@:reads/SRP011999/SRS835981/SRX862551/SRR1783422/SRR1783422.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATSDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSDS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATSDS-03A-01D	DNA	EFO	SRS835700	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATSDS-03A-01D IL10041 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10041	SRX862280	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATSDS-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATSDS-03A-01D IL10041 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATSDS-03A-01D_ATCACG.bam	SRR1783458	@dbgap@:reads/SRP011999/SRS835700/SRX862280/SRR1783458/SRR1783458.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATSDS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSDS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATSDS-10A-01D	DNA	EFO	SRS835706	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATSDS-10A-01D IL10042 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10042	SRX862281	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATSDS-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATSDS-10A-01D IL10042 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATSDS-10A-01D_CGATGT.bam	SRR1783459	@dbgap@:reads/SRP011999/SRS835706/SRX862281/SRR1783459/SRR1783459.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATSIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSIL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATSIL-09A-01D	DNA	EFO	SRS835712	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATSIL-09A-01D IL10049 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10049	SRX862288	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATSIL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATSIL-09A-01D IL10049 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATSIL-09A-01D_GATCAG.bam	SRR1783460	@dbgap@:reads/SRP011999/SRS835712/SRX862288/SRR1783460/SRR1783460.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATSIL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSIL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATSIL-10A-01D	DNA	EFO	SRS835718	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATSIL-10A-01D IL10050 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10050	SRX862289	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATSIL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATSIL-10A-01D IL10050 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATSIL-10A-01D_TAGCTT.bam	SRR1783461	@dbgap@:reads/SRP011999/SRS835718/SRX862289/SRR1783461/SRR1783461.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATSIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSIY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATSIY-09A-01D	DNA	EFO	SRS835722	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATSIY-09A-01D IL10057 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL10057	SRX862296	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATSIY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATSIY-09A-01D IL10057 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATSIY-09A-01D_GTAGAG.bam	SRR1783462	@dbgap@:reads/SRP011999/SRS835722/SRX862296/SRR1783462/SRR1783462.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATSIY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSIY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATSIY-10A-01D	DNA	EFO	SRS835719	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATSIY-10A-01D IL10058 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10058	SRX862297	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATSIY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATSIY-10A-01D IL10058 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATSIY-10A-01D_GTCCGC.bam	SRR1783463	@dbgap@:reads/SRP011999/SRS835719/SRX862297/SRR1783463/SRR1783463.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATSLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSLH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATSLH-09A-01D	DNA	EFO	SRS835728	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATSLH-09A-01D IL10065 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10065	SRX862304	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATSLH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATSLH-09A-01D IL10065 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATSLH-09A-01D_ACTGAT.bam	SRR1783464	@dbgap@:reads/SRP011999/SRS835728/SRX862304/SRR1783464/SRR1783464.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATSLH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATSLH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATSLH-10A-01D	DNA	EFO	SRS835734	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATSLH-10A-01D IL10066 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL10066	SRX862305	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATSLH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATSLH-10A-01D IL10066 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATSLH-10A-01D_ATGAGC.bam	SRR1783465	@dbgap@:reads/SRP011999/SRS835734/SRX862305/SRR1783465/SRR1783465.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATTHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATTHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTHR-09A-01D	DNA	EFO	SRS1080732	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATTHR-09A-01D SJTALL002142_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	158	59.2834	SJTALL002142_D1_EXCAP_1	SRX1274543		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATTHR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATTHR-09A-01D SJTALL002142_D1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002142_D1-TARGET-10-PATTHR-09A-01.bam	SRR2485694	@dbgap@:reads/SRP011999/SRS1080732/SRX1274543/SRR2485694/SRR2485694.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATTHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATTHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTHR-10A-01D	DNA	EFO	SRS1080731	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATTHR-10A-01D SJTALL002142_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	165	69.3982	SJTALL002142_G1_EXCAP_1	SRX1274544		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATTHR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATTHR-10A-01D SJTALL002142_G1_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002142_G1-TARGET-10-PATTHR-10A-01.bam	SRR2485695	@dbgap@:reads/SRP011999/SRS1080731/SRX1274544/SRR2485695/SRR2485695.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATVDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATVDA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATVDA-03A-01D	DNA	EFO	SRS1080730	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATVDA-03A-01D SJTALL002146_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	160	63.1911	SJTALL002146_D1_EXCAP_1	SRX1274545		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATVDA-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATVDA-03A-01D SJTALL002146_D1_EXCAP_1 run	sequencing assay	EFO	165	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002146_D1-TARGET-10-PATVDA-03A-01.bam	SRR2485696	@dbgap@:reads/SRP011999/SRS1080730/SRX1274545/SRR2485696/SRR2485696.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATVDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATVDA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATVDA-10A-01D	DNA	EFO	SRS1080729	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATVDA-10A-01D SJTALL002146_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	152	52.2108	SJTALL002146_G1_EXCAP_1	SRX1274546		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATVDA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATVDA-10A-01D SJTALL002146_G1_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002146_G1-TARGET-10-PATVDA-10A-01.bam	SRR2485697	@dbgap@:reads/SRP011999/SRS1080729/SRX1274546/SRR2485697/SRR2485697.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWHB-09A-01D	DNA	EFO	SRS835731	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWHB-09A-01D IL10073 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10073	SRX862312	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWHB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWHB-09A-01D IL10073 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWHB-09A-01D_ATCACG.bam	SRR1783466	@dbgap@:reads/SRP011999/SRS835731/SRX862312/SRR1783466/SRR1783466.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWHB-10A-01D	DNA	EFO	SRS835736	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWHB-10A-01D IL10074 library	PAIRED	GENOMIC	WXS	Hybrid Selection	179	26.8	IL10074	SRX862313	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWHB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWHB-10A-01D IL10074 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWHB-10A-01D_CGATGT.bam	SRR1783467	@dbgap@:reads/SRP011999/SRS835736/SRX862313/SRR1783467/SRR1783467.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWIJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWIJ-09A-01D	DNA	EFO	SRS945082	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWIJ-09A-01D IL12222 library	PAIRED	GENOMIC	WXS	Hybrid Selection	204	28.6	IL12222	SRX1037913	P17_B40	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWIJ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWIJ-09A-01D IL12222 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWIJ-09A-01D_CAGATC.bam	SRR2039531	@dbgap@:reads/SRP011999/SRS945082/SRX1037913/SRR2039531/SRR2039531.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWIJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWIJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWIJ-10A-01D	DNA	EFO	SRS835740	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWIJ-10A-01D IL10082 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10082	SRX862320	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWIJ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWIJ-10A-01D IL10082 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWIJ-10A-01D_TAGCTT.bam	SRR1783468	@dbgap@:reads/SRP011999/SRS835740/SRX862320/SRR1783468/SRR1783468.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWJU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWJU-09A-01D	DNA	EFO	SRS835751	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWJU-09A-01D IL10089 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10089	SRX862326	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWJU-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWJU-09A-01D IL10089 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWJU-09A-01D_GTAGAG.bam	SRR1783469	@dbgap@:reads/SRP011999/SRS835751/SRX862326/SRR1783469/SRR1783469.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWJU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWJU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWJU-10A-01D	DNA	EFO	SRS835748	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWJU-10A-01D IL10090 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10090	SRX862327	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWJU-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWJU-10A-01D IL10090 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWJU-10A-01D_GTCCGC.bam	SRR1783470	@dbgap@:reads/SRP011999/SRS835748/SRX862327/SRR1783470/SRR1783470.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWNL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWNL-09A-01D	DNA	EFO	SRS835756	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWNL-09A-01D IL10097 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10097	SRX862334	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWNL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWNL-09A-01D IL10097 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWNL-09A-01D_ACTGAT.bam	SRR1783471	@dbgap@:reads/SRP011999/SRS835756/SRX862334/SRR1783471/SRR1783471.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWNL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWNL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWNL-10A-01D	DNA	EFO	SRS835757	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWNL-10A-01D IL10098 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10098	SRX862335	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWNL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWNL-10A-01D IL10098 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWNL-10A-01D_ATGAGC.bam	SRR1783472	@dbgap@:reads/SRP011999/SRS835757/SRX862335/SRR1783472/SRR1783472.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWXC-09A-01D	DNA	EFO	SRS835765	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWXC-09A-01D IL10130 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL10130	SRX862342	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWXC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWXC-09A-01D IL10130 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWXC-09A-01D_ATCACG.bam	SRR1783473	@dbgap@:reads/SRP011999/SRS835765/SRX862342/SRR1783473/SRR1783473.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWXC-10A-01D	DNA	EFO	SRS835766	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWXC-10A-01D IL10131 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10131	SRX862343	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWXC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWXC-10A-01D IL10131 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWXC-10A-01D_CGATGT.bam	SRR1783474	@dbgap@:reads/SRP011999/SRS835766/SRX862343/SRR1783474/SRR1783474.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWYL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWYL-09A-01D	DNA	EFO	SRS1080728	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATWYL-09A-01D SJTALL002124_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	61.2142	SJTALL002124_D1_EXCAP_1	SRX1274547		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATWYL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATWYL-09A-01D SJTALL002124_D1_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002124_D1-TARGET-10-PATWYL-09A-01.bam	SRR2485698	@dbgap@:reads/SRP011999/SRS1080728/SRX1274547/SRR2485698/SRR2485698.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWYL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWYL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWYL-10A-01D	DNA	EFO	SRS1080727	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATWYL-10A-01D SJTALL002124_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	61.8459	SJTALL002124_G1_EXCAP_1	SRX1274548		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATWYL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATWYL-10A-01D SJTALL002124_G1_EXCAP_1 run	sequencing assay	EFO	174	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002124_G1-TARGET-10-PATWYL-10A-01.bam	SRR2485699	@dbgap@:reads/SRP011999/SRS1080727/SRX1274548/SRR2485699/SRR2485699.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWYZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWYZ-09A-01D	DNA	EFO	SRS835773	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWYZ-09A-01D IL10138 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10138	SRX862350	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWYZ-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWYZ-09A-01D IL10138 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWYZ-09A-01D_GATCAG.bam	SRR1783475	@dbgap@:reads/SRP011999/SRS835773/SRX862350/SRR1783475/SRR1783475.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATWYZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATWYZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATWYZ-10A-01D	DNA	EFO	SRS835774	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATWYZ-10A-01D IL10139 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10139	SRX862351	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATWYZ-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATWYZ-10A-01D IL10139 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATWYZ-10A-01D_TAGCTT.bam	SRR1783476	@dbgap@:reads/SRP011999/SRS835774/SRX862351/SRR1783476/SRR1783476.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXAL-09A-01D	DNA	EFO	SRS1080726	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATXAL-09A-01D SJTALL022447_D2_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	156	56.638	SJTALL022447_D2_EXCAP_1	SRX1274549		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATXAL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATXAL-09A-01D SJTALL022447_D2_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL022447_D2-TARGET-10-PATXAL-09A-01.bam	SRR2485700	@dbgap@:reads/SRP011999/SRS1080726/SRX1274549/SRR2485700/SRR2485700.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXAL-10A-01D	DNA	EFO	SRS1080725	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATXAL-10A-01D SJTALL022447_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	157	57.9366	SJTALL022447_G1_EXCAP_1	SRX1274550		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATXAL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATXAL-10A-01D SJTALL022447_G1_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL022447_G1-TARGET-10-PATXAL-10A-01.bam	SRR2485701	@dbgap@:reads/SRP011999/SRS1080725/SRX1274550/SRR2485701/SRR2485701.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXKW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXKW-03A-01D	DNA	EFO	SRS835782	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATXKW-03A-01D IL10146 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10146	SRX862358	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATXKW-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATXKW-03A-01D IL10146 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATXKW-03A-01D_GTAGAG.bam	SRR1783477	@dbgap@:reads/SRP011999/SRS835782/SRX862358/SRR1783477/SRR1783477.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXKW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXKW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXKW-10A-01D	DNA	EFO	SRS835783	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATXKW-10A-01D IL10147 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10147	SRX862359	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATXKW-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATXKW-10A-01D IL10147 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATXKW-10A-01D_GTCCGC.bam	SRR1783478	@dbgap@:reads/SRP011999/SRS835783/SRX862359/SRR1783478/SRR1783478.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXNK-09A-01D	DNA	EFO	SRS835792	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATXNK-09A-01D IL10154 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10154	SRX862366	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATXNK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATXNK-09A-01D IL10154 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATXNK-09A-01D_ACTGAT.bam	SRR1783479	@dbgap@:reads/SRP011999/SRS835792/SRX862366/SRR1783479/SRR1783479.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXNK-10A-01D	DNA	EFO	SRS835790	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATXNK-10A-01D IL10155 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10155	SRX862367	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATXNK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATXNK-10A-01D IL10155 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATXNK-10A-01D_ATGAGC.bam	SRR1783480	@dbgap@:reads/SRP011999/SRS835790/SRX862367/SRR1783480/SRR1783480.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXNR-09A-01D	DNA	EFO	SRS835705	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATXNR-09A-01D IL10043 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10043	SRX862282	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATXNR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATXNR-09A-01D IL10043 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATXNR-09A-01D_TTAGGC.bam	SRR1783481	@dbgap@:reads/SRP011999/SRS835705/SRX862282/SRR1783481/SRR1783481.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXNR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXNR-09A-01D	DNA	EFO	SRS835705	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATXNR-09A-01D IL10043 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10043	SRX862282	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATXNR-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATXNR-09A-01D IL10043 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATXNR-09A-01D_TTAGGC_supp.bam	SRR2990570	@dbgap@:reads/SRP011999/SRS835705/SRX862282/SRR2990570/SRR2990570.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXNR-10A-01D	DNA	EFO	SRS835707	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATXNR-10A-01D IL10044 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL10044	SRX862283	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATXNR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATXNR-10A-01D IL10044 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATXNR-10A-01D_TGACCA.bam	SRR1783482	@dbgap@:reads/SRP011999/SRS835707/SRX862283/SRR1783482/SRR1783482.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXSK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXSK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXSK-09A-01D	DNA	EFO	SRS835713	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATXSK-09A-01D IL10051 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10051	SRX862290	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATXSK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATXSK-09A-01D IL10051 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATXSK-09A-01D_GGCTAC.bam	SRR1783483	@dbgap@:reads/SRP011999/SRS835713/SRX862290/SRR1783483/SRR1783483.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATXSK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATXSK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATXSK-10A-01D	DNA	EFO	SRS835714	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATXSK-10A-01D IL10052 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL10052	SRX862291	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATXSK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATXSK-10A-01D IL10052 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATXSK-10A-01D_CTTGTA.bam	SRR1783484	@dbgap@:reads/SRP011999/SRS835714/SRX862291/SRR1783484/SRR1783484.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATYCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYCH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATYCH-09A-01D	DNA	EFO	SRS1080724	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATYCH-09A-01D SJTALL002151_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	60.8354	SJTALL002151_D1_EXCAP_1	SRX1274551		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATYCH-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATYCH-09A-01D SJTALL002151_D1_EXCAP_1 run	sequencing assay	EFO	176	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002151_D1-TARGET-10-PATYCH-09A-01.bam	SRR2485702	@dbgap@:reads/SRP011999/SRS1080724/SRX1274551/SRR2485702/SRR2485702.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATYCH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYCH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATYCH-10A-01D	DNA	EFO	SRS1080723	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATYCH-10A-01D SJTALL002151_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	61.5572	SJTALL002151_G1_EXCAP_1	SRX1274552		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATYCH-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATYCH-10A-01D SJTALL002151_G1_EXCAP_1 run	sequencing assay	EFO	168	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002151_G1-TARGET-10-PATYCH-10A-01.bam	SRR2485703	@dbgap@:reads/SRP011999/SRS1080723/SRX1274552/SRR2485703/SRR2485703.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATYJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYJK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATYJK-09A-01D	DNA	EFO	SRS891227	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATYJK-09A-01D IL11572 library	PAIRED	GENOMIC	WXS	Hybrid Selection	198	28.1	IL11572	SRX975763	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATYJK-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATYJK-09A-01D IL11572 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATYJK-09A-01D_TTAGGC.bam	SRR1949704	@dbgap@:reads/SRP011999/SRS891227/SRX975763/SRR1949704/SRR1949704.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATYJK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYJK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATYJK-10A-01D	DNA	EFO	SRS891234	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATYJK-10A-01D IL11573 library	PAIRED	GENOMIC	WXS	Hybrid Selection	201	28.4	IL11573	SRX975760	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATYJK-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATYJK-10A-01D IL11573 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATYJK-10A-01D_TGACCA.bam	SRR1949705	@dbgap@:reads/SRP011999/SRS891234/SRX975760/SRR1949705/SRR1949705.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATYMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYMP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATYMP-09A-01D	DNA	EFO	SRS835725	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATYMP-09A-01D IL10059 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10059	SRX862298	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATYMP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATYMP-09A-01D IL10059 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATYMP-09A-01D_GTGAAA.bam	SRR1783485	@dbgap@:reads/SRP011999/SRS835725/SRX862298/SRR1783485/SRR1783485.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATYMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYMP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATYMP-10A-01D	DNA	EFO	SRS835727	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATYMP-10A-01D IL10060 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL10060	SRX862299	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATYMP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATYMP-10A-01D IL10060 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATYMP-10A-01D_GTGGCC.bam	SRR1783486	@dbgap@:reads/SRP011999/SRS835727/SRX862299/SRR1783486/SRR1783486.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATYMP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYMP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATYMP-10A-01D	DNA	EFO	SRS835727	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATYMP-10A-01D IL10060 library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	29	IL10060	SRX862299	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATYMP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATYMP-10A-01D IL10060 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATYMP-10A-01D_ACAGTG.bam	SRR2039532	@dbgap@:reads/SRP011999/SRS835727/SRX862299/SRR2039532/SRR2039532.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYWV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATYWV-09A-01D	DNA	EFO	SRS835729	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATYWV-09A-01D IL10067 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL10067	SRX862306	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATYWV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATYWV-09A-01D IL10067 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATYWV-09A-01D_ATTCCT.bam	SRR1783487	@dbgap@:reads/SRP011999/SRS835729/SRX862306/SRR1783487/SRR1783487.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATYWV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATYWV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATYWV-10A-01D	DNA	EFO	SRS835737	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATYWV-10A-01D IL10068 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10068	SRX862307	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATYWV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATYWV-10A-01D IL10068 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATYWV-10A-01D_CAAAAG.bam	SRR1783488	@dbgap@:reads/SRP011999/SRS835737/SRX862307/SRR1783488/SRR1783488.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZFF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZFF-09A-01D	DNA	EFO	SRS835735	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZFF-09A-01D IL10075 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10075	SRX862314	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZFF-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZFF-09A-01D IL10075 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZFF-09A-01D_TTAGGC.bam	SRR1783489	@dbgap@:reads/SRP011999/SRS835735/SRX862314/SRR1783489/SRR1783489.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZFF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZFF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZFF-10A-01D	DNA	EFO	SRS835746	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZFF-10A-01D IL10076 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10076	SRX862315	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZFF-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZFF-10A-01D IL10076 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZFF-10A-01D_TGACCA.bam	SRR1783490	@dbgap@:reads/SRP011999/SRS835746/SRX862315/SRR1783490/SRR1783490.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZSL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZSL-09A-01D	DNA	EFO	SRS835744	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZSL-09A-01D IL10083 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10083	SRX862321	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZSL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZSL-09A-01D IL10083 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZSL-09A-01D_GGCTAC.bam	SRR1783491	@dbgap@:reads/SRP011999/SRS835744/SRX862321/SRR1783491/SRR1783491.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZSL-10A-01D	DNA	EFO	SRS835743	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZSL-10A-01D IL10084 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10084	SRX862322	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZSL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZSL-10A-01D IL10084 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZSL-10A-01D_CTTGTA.bam	SRR1783492	@dbgap@:reads/SRP011999/SRS835743/SRX862322/SRR1783492/SRR1783492.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZVD-09A-01D	DNA	EFO	SRS1080720	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATZVD-09A-01D SJTALL002125_D1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	159	62.9183	SJTALL002125_D1_EXCAP_1	SRX1274553		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATZVD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATZVD-09A-01D SJTALL002125_D1_EXCAP_1 run	sequencing assay	EFO	162	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002125_D1-TARGET-10-PATZVD-09A-01.bam	SRR2485704	@dbgap@:reads/SRP011999/SRS1080720/SRX1274553/SRR2485704/SRR2485704.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZVD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZVD-10A-01D	DNA	EFO	SRS1080719	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PATZVD-10A-01D SJTALL002125_G1_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	161	56.094	SJTALL002125_G1_EXCAP_1	SRX1274554		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PATZVD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-10-30	TARGET-10-PATZVD-10A-01D SJTALL002125_G1_EXCAP_1 run	sequencing assay	EFO	179	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002125_G1-TARGET-10-PATZVD-10A-01.bam	SRR2485705	@dbgap@:reads/SRP011999/SRS1080719/SRX1274554/SRR2485705/SRR2485705.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZWA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZWA-03A-01D	DNA	EFO	SRS835750	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZWA-03A-01D IL10091 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10091	SRX862328	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZWA-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZWA-03A-01D IL10091 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZWA-03A-01D_GTGAAA.bam	SRR1783493	@dbgap@:reads/SRP011999/SRS835750/SRX862328/SRR1783493/SRR1783493.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZWA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZWA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZWA-10A-01D	DNA	EFO	SRS835760	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZWA-10A-01D IL10092 library	PAIRED	GENOMIC	WXS	Hybrid Selection	182	27	IL10092	SRX862329	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZWA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZWA-10A-01D IL10092 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZWA-10A-01D_GTGGCC.bam	SRR1783494	@dbgap@:reads/SRP011999/SRS835760/SRX862329/SRR1783494/SRR1783494.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZYC-09A-01D	DNA	EFO	SRS835758	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZYC-09A-01D IL10099 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10099	SRX862336	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZYC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZYC-09A-01D IL10099 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZYC-09A-01D_ATTCCT.bam	SRR1783495	@dbgap@:reads/SRP011999/SRS835758/SRX862336/SRR1783495/SRR1783495.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZYC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZYC-10A-01D	DNA	EFO	SRS835759	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZYC-10A-01D IL10100 library	PAIRED	GENOMIC	WXS	Hybrid Selection	184	27.1	IL10100	SRX862337	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZYC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZYC-10A-01D IL10100 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZYC-10A-01D_CAAAAG.bam	SRR1783496	@dbgap@:reads/SRP011999/SRS835759/SRX862337/SRR1783496/SRR1783496.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZYR-03A-01D	DNA	EFO	SRS835768	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZYR-03A-01D IL10132 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10132	SRX862344	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZYR-03A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZYR-03A-01D IL10132 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZYR-03A-01D_TTAGGC.bam	SRR1783497	@dbgap@:reads/SRP011999/SRS835768/SRX862344/SRR1783497/SRR1783497.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PATZYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PATZYR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATZYR-10A-01D	DNA	EFO	SRS835769	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PATZYR-10A-01D IL10133 library	PAIRED	GENOMIC	WXS	Hybrid Selection	195	27.9	IL10133	SRX862345	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PATZYR-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PATZYR-10A-01D IL10133 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PATZYR-10A-01D_TGACCA.bam	SRR1783498	@dbgap@:reads/SRP011999/SRS835769/SRX862345/SRR1783498/SRR1783498.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUACG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUACG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUACG-09A-01D	DNA	EFO	SRS1080718	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAUACG-09A-01D TARGET-10-PAUACG-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	72.3862	TARGET-10-PAUACG-09A-01_EXCAP_1	SRX1274555		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAUACG-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAUACG-09A-01D TARGET-10-PAUACG-09A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002140_D1-TARGET-10-PAUACG-09A-01.bam	SRR2485706	@dbgap@:reads/SRP011999/SRS1080718/SRX1274555/SRR2485706/SRR2485706.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUACG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUACG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUACG-10A-01D	DNA	EFO	SRS1080717	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAUACG-10A-01D TARGET-10-PAUACG-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	170	72.6305	TARGET-10-PAUACG-10A-01_EXCAP_1	SRX1274556		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAUACG-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAUACG-10A-01D TARGET-10-PAUACG-10A-01_EXCAP_1 run	sequencing assay	EFO	171	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002140_G1-TARGET-10-PAUACG-10A-01.bam	SRR2485707	@dbgap@:reads/SRP011999/SRS1080717/SRX1274556/SRR2485707/SRR2485707.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUAFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUAFN-09A-01D	DNA	EFO	SRS835779	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUAFN-09A-01D IL10140 library	PAIRED	GENOMIC	WXS	Hybrid Selection	187	27.3	IL10140	SRX862352	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUAFN-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUAFN-09A-01D IL10140 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUAFN-09A-01D_GGCTAC.bam	SRR1783499	@dbgap@:reads/SRP011999/SRS835779/SRX862352/SRR1783499/SRR1783499.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUAFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAFN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUAFN-10A-01D	DNA	EFO	SRS835776	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUAFN-10A-01D IL10141 library	PAIRED	GENOMIC	WXS	Hybrid Selection	183	27.1	IL10141	SRX862353	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUAFN-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUAFN-10A-01D IL10141 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUAFN-10A-01D_CTTGTA.bam	SRR1783500	@dbgap@:reads/SRP011999/SRS835776/SRX862353/SRR1783500/SRR1783500.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUAJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAJA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUAJA-09A-01D	DNA	EFO	SRS835784	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUAJA-09A-01D IL10148 library	PAIRED	GENOMIC	WXS	Hybrid Selection	188	27.4	IL10148	SRX862360	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUAJA-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUAJA-09A-01D IL10148 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUAJA-09A-01D_GTGAAA.bam	SRR1783501	@dbgap@:reads/SRP011999/SRS835784/SRX862360/SRR1783501/SRR1783501.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUAJA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAJA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUAJA-10A-01D	DNA	EFO	SRS835786	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUAJA-10A-01D IL10149 library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	28.8	IL10149	SRX862361	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUAJA-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUAJA-10A-01D IL10149 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUAJA-10A-01D_GTGGCC.bam	SRR1783502	@dbgap@:reads/SRP011999/SRS835786/SRX862361/SRR1783502/SRR1783502.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUAYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAYB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUAYB-09A-01D	DNA	EFO	SRS891236	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUAYB-09A-01D IL11576 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL11576	SRX975755	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUAYB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUAYB-09A-01D IL11576 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUAYB-09A-01D_CAGATC.bam	SRR1949706	@dbgap@:reads/SRP011999/SRS891236/SRX975755/SRR1949706/SRR1949706.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUAYB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAYB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUAYB-14A-01D	DNA	EFO	SRS891248	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUAYB-14A-01D IL11577 library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	28.7	IL11577	SRX975745	P12+16_B38	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUAYB-14A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUAYB-14A-01D IL11577 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUAYB-14A-01D_ACTTGA.bam	SRR1949707	@dbgap@:reads/SRP011999/SRS891248/SRX975745/SRR1949707/SRR1949707.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUAZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAZV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUAZV-09A-01D	DNA	EFO	SRS835794	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUAZV-09A-01D IL10156 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10156	SRX862368	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUAZV-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUAZV-09A-01D IL10156 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUAZV-09A-01D_ATTCCT.bam	SRR1783503	@dbgap@:reads/SRP011999/SRS835794/SRX862368/SRR1783503/SRR1783503.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUAZV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUAZV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUAZV-10A-01D	DNA	EFO	SRS835791	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUAZV-10A-01D IL10157 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10157	SRX862369	P6_B24	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUAZV-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUAZV-10A-01D IL10157 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUAZV-10A-01D_CAAAAG.bam	SRR1783504	@dbgap@:reads/SRP011999/SRS835791/SRX862369/SRR1783504/SRR1783504.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBCB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBCB-09A-01D	DNA	EFO	SRS835708	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBCB-09A-01D IL10045 library	PAIRED	GENOMIC	WXS	Hybrid Selection	192	27.7	IL10045	SRX862284	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBCB-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBCB-09A-01D IL10045 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBCB-09A-01D_ACAGTG.bam	SRR1783505	@dbgap@:reads/SRP011999/SRS835708/SRX862284/SRR1783505/SRR1783505.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBCB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBCB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBCB-10A-01D	DNA	EFO	SRS835709	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBCB-10A-01D IL10046 library	PAIRED	GENOMIC	WXS	Hybrid Selection	189	27.5	IL10046	SRX862285	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBCB-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBCB-10A-01D IL10046 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBCB-10A-01D_GCCAAT.bam	SRR1783506	@dbgap@:reads/SRP011999/SRS835709/SRX862285/SRR1783506/SRR1783506.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBCT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBCT-09A-01D	DNA	EFO	SRS835715	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBCT-09A-01D IL10053 library	PAIRED	GENOMIC	WXS	Hybrid Selection	190	27.6	IL10053	SRX862292	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBCT-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBCT-09A-01D IL10053 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBCT-09A-01D_AGTCAA.bam	SRR1783507	@dbgap@:reads/SRP011999/SRS835715/SRX862292/SRR1783507/SRR1783507.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBCT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBCT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBCT-10A-01D	DNA	EFO	SRS835716	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBCT-10A-01D IL10054 library	PAIRED	GENOMIC	WXS	Hybrid Selection	196	28	IL10054	SRX862293	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBCT-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBCT-10A-01D IL10054 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBCT-10A-01D_AGTTCC.bam	SRR1783508	@dbgap@:reads/SRP011999/SRS835716/SRX862293/SRR1783508/SRR1783508.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBLL-09A-01D	DNA	EFO	SRS835720	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBLL-09A-01D IL10061 library	PAIRED	GENOMIC	WXS	Hybrid Selection	191	27.6	IL10061	SRX862300	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBLL-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBLL-09A-01D IL10061 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBLL-09A-01D_GTTTCG.bam	SRR1783509	@dbgap@:reads/SRP011999/SRS835720/SRX862300/SRR1783509/SRR1783509.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBLL-10A-01D	DNA	EFO	SRS835724	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBLL-10A-01D IL10062 library	PAIRED	GENOMIC	WXS	Hybrid Selection	194	27.9	IL10062	SRX862301	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBLL-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBLL-10A-01D IL10062 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBLL-10A-01D_CGTACG.bam	SRR1783510	@dbgap@:reads/SRP011999/SRS835724/SRX862301/SRR1783510/SRR1783510.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBPY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBPY-09A-01D	DNA	EFO	SRS835730	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBPY-09A-01D IL10069 library	PAIRED	GENOMIC	WXS	Hybrid Selection	193	27.8	IL10069	SRX862308	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBPY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBPY-09A-01D IL10069 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBPY-09A-01D_CAACTA.bam	SRR1783511	@dbgap@:reads/SRP011999/SRS835730/SRX862308/SRR1783511/SRR1783511.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBPY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBPY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBPY-10A-01D	DNA	EFO	SRS835732	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBPY-10A-01D IL10070 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10070	SRX862309	P6_B22	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBPY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBPY-10A-01D IL10070 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBPY-10A-01D_CACCGG.bam	SRR1783512	@dbgap@:reads/SRP011999/SRS835732/SRX862309/SRR1783512/SRR1783512.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBRD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBRD-09A-01D	DNA	EFO	SRS1080716	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAUBRD-09A-01D TARGET-10-PAUBRD-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	69.2291	TARGET-10-PAUBRD-09A-01_EXCAP_1	SRX1274557		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAUBRD-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAUBRD-09A-01D TARGET-10-PAUBRD-09A-01_EXCAP_1 run	sequencing assay	EFO	170	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002126_D1-TARGET-10-PAUBRD-09A-01.bam	SRR2485708	@dbgap@:reads/SRP011999/SRS1080716/SRX1274557/SRR2485708/SRR2485708.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBRD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBRD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBRD-10A-01D	DNA	EFO	SRS1080715	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAUBRD-10A-01D TARGET-10-PAUBRD-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	166	65.7395	TARGET-10-PAUBRD-10A-01_EXCAP_1	SRX1274558		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAUBRD-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAUBRD-10A-01D TARGET-10-PAUBRD-10A-01_EXCAP_1 run	sequencing assay	EFO	175	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002126_G1-TARGET-10-PAUBRD-10A-01.bam	SRR2485709	@dbgap@:reads/SRP011999/SRS1080715/SRX1274558/SRR2485709/SRR2485709.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBTC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBTC-09A-01D	DNA	EFO	SRS1080714	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAUBTC-09A-01D TARGET-10-PAUBTC-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	140	38.7658	TARGET-10-PAUBTC-09A-01_EXCAP_1	SRX1274559		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAUBTC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAUBTC-09A-01D TARGET-10-PAUBTC-09A-01_EXCAP_1 run	sequencing assay	EFO	160	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002130_D1-TARGET-10-PAUBTC-09A-01.bam	SRR2485710	@dbgap@:reads/SRP011999/SRS1080714/SRX1274559/SRR2485710/SRR2485710.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBTC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBTC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBTC-10A-01D	DNA	EFO	SRS1080713	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAUBTC-10A-01D TARGET-10-PAUBTC-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	160	59.6313	TARGET-10-PAUBTC-10A-01_EXCAP_1	SRX1274560		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAUBTC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAUBTC-10A-01D TARGET-10-PAUBTC-10A-01_EXCAP_1 run	sequencing assay	EFO	173	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002130_G1-TARGET-10-PAUBTC-10A-01.bam	SRR2485711	@dbgap@:reads/SRP011999/SRS1080713/SRX1274560/SRR2485711/SRR2485711.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBXP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBXP-09A-01D	DNA	EFO	SRS835745	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBXP-09A-01D IL10077 library	PAIRED	GENOMIC	WXS	Hybrid Selection	180	26.8	IL10077	SRX862316	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBXP-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBXP-09A-01D IL10077 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBXP-09A-01D_ACAGTG.bam	SRR1783513	@dbgap@:reads/SRP011999/SRS835745/SRX862316/SRR1783513/SRR1783513.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUBXP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUBXP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUBXP-10A-01D	DNA	EFO	SRS835738	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUBXP-10A-01D IL10078 library	PAIRED	GENOMIC	WXS	Hybrid Selection	181	26.9	IL10078	SRX862317	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUBXP-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUBXP-10A-01D IL10078 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUBXP-10A-01D_GCCAAT.bam	SRR1783514	@dbgap@:reads/SRP011999/SRS835738/SRX862317/SRR1783514/SRR1783514.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUCDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUCDC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUCDC-09A-01D	DNA	EFO	SRS835749	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUCDC-09A-01D IL10085 library	PAIRED	GENOMIC	WXS	Hybrid Selection	185	27.2	IL10085	SRX862323	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUCDC-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUCDC-09A-01D IL10085 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUCDC-09A-01D_AGTCAA.bam	SRR1783515	@dbgap@:reads/SRP011999/SRS835749/SRX862323/SRR1783515/SRR1783515.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUCDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUCDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUCDC-10A-01D	DNA	EFO	SRS835747	beckmangenomics.com:Protocol:WXS-LibraryPrep-Illumina:01	beckmangenomics.com:Protocol:WXS-ExomeCapture-Agilent-SureSelectHumanAllExonV5:01	Beckman Coulter Genomics, Danvers MA	TARGET-10-PAUCDC-10A-01D IL10086 library	PAIRED	GENOMIC	WXS	Hybrid Selection	186	27.3	IL10086	SRX862324	P6_B23	"Illumina paired-end sequencing of Agilent exome v5 target capture library of sample TARGET-10-PAUCDC-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2 sequenced using Illumina HiSeq 2500"	beckmangenomics.com:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	BCG-Danvers		TARGET-10-PAUCDC-10A-01D IL10086 run	sequencing assay	EFO	200	beckmangenomics.com:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	beckmangenomics.com:Protocol:WXS-ReadAlign:01	bwa 0.6.1;samtools 0.1.19;picard-tools 1.86	TARGET-10-PAUCDC-10A-01D_AGTTCC.bam	SRR1783516	@dbgap@:reads/SRP011999/SRS835747/SRX862324/SRR1783516/SRR1783516.sra	2	HG19	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUCDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUCDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUCDY-09A-01D	DNA	EFO	SRS1080712	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAUCDY-09A-01D TARGET-10-PAUCDY-09A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	168	71.0788	TARGET-10-PAUCDY-09A-01_EXCAP_1	SRX1274561		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAUCDY-09A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAUCDY-09A-01D TARGET-10-PAUCDY-09A-01_EXCAP_1 run	sequencing assay	EFO	169	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002141_D1-TARGET-10-PAUCDY-09A-01.bam	SRR2485712	@dbgap@:reads/SRP011999/SRS1080712/SRX1274561/SRR2485712/SRR2485712.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-10-PAUCDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Validation	TARGET-10-PAUCDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUCDY-10A-01D	DNA	EFO	SRS1080711	stjude.org:Protocol:WXS-LibraryPrep-Illumina:01	stjude.org:Protocol:WXS-ExomeCapture-Illumina-NexteraRapidCaptureExome:01	St Jude Children's Research Hospital	TARGET-10-PAUCDY-10A-01D TARGET-10-PAUCDY-10A-01_EXCAP_1 library	PAIRED	GENOMIC	WXS	Hybrid Selection	168	63.998	TARGET-10-PAUCDY-10A-01_EXCAP_1	SRX1274562		"Illumina paired-end sequencing of Illumina Nextera Rapid Capture Exome library for sample TARGET-10-PAUCDY-10A-01D in TARGET: Acute Lymphoblastic Leukemia (ALL) Expansion Phase 2"	stjude.org:Protocol:WXS-Sequence-Illumina-HiSeq2500:01	StJude	2014-11-19	TARGET-10-PAUCDY-10A-01D TARGET-10-PAUCDY-10A-01_EXCAP_1 run	sequencing assay	EFO	178	stjude.org:Protocol:WXS-BaseCall-Illumina:01	CASAVA 1.8.2	stjude.org:Protocol:WXS-ReadAlign:01	bwa 0.5.9-r26-dev;picard-tools 1.65	SJTALL002141_G1-TARGET-10-PAUCDY-10A-01.bam	SRR2485713	@dbgap@:reads/SRP011999/SRS1080711/SRX1274562/SRR2485713/SRR2485713.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_TALL_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
