study barcode disease disease_name sample_type sample_type_name analyte_type library_type center center_name platform platform_name assembly filename files_size checksum analysis_id aliquot_id participant_id sample_id tss_id sample_accession published uploaded modified state sample_type_code analyte_type_code platform_full_name file_type reason reagent_vendor reagent_name catalog_number is_custom target_file_url probe_file_url TCGA TCGA-FU-A5XV-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 11284dc9416d5bace3b97c2a9d88cb0a.bam 4204410920 11284dc9416d5bace3b97c2a9d88cb0a 0032855e-1c17-4598-bcf1-22eae51fb039 9c23cb7c-3414-47a2-85ab-896140b04a43 9dba5a81-3587-4f5a-8d19-e0b0aed0a677 0508cc06-1d8a-466c-9133-7b024e309a73 FU 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R9-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b471a0d1d27812d3818aafbd52f833d6.bam 6420824783 b471a0d1d27812d3818aafbd52f833d6 008d4e80-859b-4e7d-b405-620a2d768576 8a08173e-ca6f-4dc1-8ee7-aee63ef61d7c 00ad0ffe-2105-4829-a495-1c2aceb5bb31 996ad494-90b1-4ac7-9339-dd4acf5af472 EK 2012-11-09 2012-11-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MI-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MI-10A-01D-A14W-08.3.bam 9308596556 118fc92453712ef1d53e854c53085bc1 01ad63b6-8b88-419c-a068-04a0e8073498 a3d0503b-baac-4f83-9182-be7b4154c61d 941f75a1-fea4-4539-ba69-60bb11608f6d b9b8f225-df87-48bd-bb39-e049f8bb2c0f C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A3GJ-01A-21D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 589ef632efd56a3eb8bd671a8fd995d6.bam 4690378439 589ef632efd56a3eb8bd671a8fd995d6 01a6c2f9-c779-455e-bd9c-d59e33f88cf0 eeec3f16-0e6d-409f-91cb-732488e46db1 deda68dd-e9ad-45cc-9dbb-1c5836ef6519 93ab0265-4851-4a8e-bee3-496ea8de56f7 EK 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CH-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3a4780910e6b0fba7d8a783c63b0d3af.bam 6348401610 3a4780910e6b0fba7d8a783c63b0d3af 0205bedd-1f3f-4256-8421-2d7e24cc2460 7099c2b8-72df-4118-9950-72799ab04f3e d626a732-af64-4dec-b4bf-3cb761bf4c8d fbf7856e-6330-4033-8b33-d06fc2b99108 C5 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BE-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BE-10A-01D-A13W-08.2.bam 17768553436 bffae51c15c23bfaa3878ccbf9d64b1e 02214aa8-ca55-4d45-a0f6-b515c8dd4612 7d05a76b-1885-47d5-a8b3-08b2a1b401b4 2b6d2c15-8bcc-41ab-84d6-601442f4378b f87d9890-19a7-4a67-a4ba-159047e11c1e C5 SRS203005 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXD-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dfd77523601fa8e3f43635b592d2ccfe.bam 5896896178 dfd77523601fa8e3f43635b592d2ccfe 02313ef5-46bc-4c7b-b79d-b23146ff76d5 e79282c4-19d0-4395-8072-a5fa6f78e04a af33df2e-9737-4f63-952c-858a70aa589c 19e2597d-f575-4fe1-bb27-28406184fe64 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LC-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build db9bb0507d7839e9def3a34bbefaa6e3.bam 5195727442 db9bb0507d7839e9def3a34bbefaa6e3 02bb1d50-ed84-4828-bca5-2bda10c40828 0ae152f3-8825-4ebc-ba32-d491560a8bf4 58bdcace-0047-456e-a225-68953edafe5e ac6d15a0-67cf-42aa-97dc-ba50d0e9f409 IR 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UE-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8389d504bf7c5afc147fee8adbc5c875.bam 6615189818 8389d504bf7c5afc147fee8adbc5c875 02fbb873-d466-4ec7-9279-1c99829c4522 89a68ab1-97ef-4177-aa15-ad90f387109b da30a845-c4d3-4c78-b8b0-210239224f8f 48ecab30-cf47-43a8-af5c-026140a53ef8 C5 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A20A-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A20A-01A-11D-A14W-08.3.bam 8628459222 949d054e039c002d4ddc0f3d5bbd99ff 03b8de54-9e8e-424b-8f1b-540bda5cb90d 26397cf7-5149-4147-8d13-1083d5ccf9f0 f40468de-3b86-4922-9951-f8ae28da6af0 73bb25ec-bf67-4a93-a159-a4b34e7534de BI 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9UP-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b9104e9635b37058a5e1997a2fa6eb7b.bam 7254395132 b9104e9635b37058a5e1997a2fa6eb7b 03bfc668-1e92-4dfe-8cd7-5ddb4e1f03f5 ff9e7ce0-e9f8-4396-ab13-21d7d06dbc8e f0cfaacc-30e5-4e54-b33a-f0fd5dad620e 9cd99f4d-69a5-4685-8720-0484d14f8c6c VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LI-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8dc5fa617f8e5a909936cd355458e5aa.bam 5690961542 8dc5fa617f8e5a909936cd355458e5aa 041960e5-151e-4445-a512-6b19b95387a9 0f741066-3dc3-42b9-8287-28b5e5aade9a 75bc22d8-738d-45f8-b6c0-c664f5fef47c ebfa4682-49c9-4ac1-8147-e3860d852d28 IR 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AV-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 25e5a97bad47b1865496303680191c42.bam 4131825777 25e5a97bad47b1865496303680191c42 050992c7-a47a-4c80-8591-2ae40fc3b78f 4de35b22-a7e2-46e2-a2e3-f28e55834986 f241d6b1-2c32-4478-8f8d-8c746464f7d1 522e7c48-5f2c-4fc3-9f3e-23a4347ec4b9 LP 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UL-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0cf3da1d0cbb57f15e263e5bf90b7566.bam 5000150537 0cf3da1d0cbb57f15e263e5bf90b7566 05223772-fb32-4af3-8c56-e3f2e4395068 7bd7fc86-2ad0-4072-9b46-12d149f7c6a6 7abaca8f-962e-4f9d-b63f-26c131bf5961 e57d6c1a-8ad6-457c-b56b-ce989b356101 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A0VS-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A0VS-10A-01D-A10S-08.4.bam 16713287201 9d4e36e9ddc450e6b45c6d5dc9ee65ab 053df050-247a-452d-85bd-abd9c7427aca cc7fbc59-ea41-4bf9-931a-a84da881e22c 3923a64a-f8d7-4e3e-9218-cee642da21db 2fbddd03-e9f3-4d01-b6ff-7154716930da BI SRS202297 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1MI-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MI-01A-11D-A14W-08.3.bam 9899000503 0c05c1f45603fbc11e7193a79bea2202 055f0c90-eb89-4f97-8317-616a4b0a30a4 497c20f0-8a42-4d20-abdc-0415982ebb9f 941f75a1-fea4-4539-ba69-60bb11608f6d a753bcf7-82d6-4fb1-af0d-641898bbff9c C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A3WB-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eee3296aacc98ece092bde88a95e21fc.bam 6267556705 eee3296aacc98ece092bde88a95e21fc 05c0e381-3708-4eca-b94e-f06c81e458ec b096c6ae-e4ed-41a0-a02f-1a1913ef0f31 6868ba1d-b612-454c-8146-74af2f573d76 e4d37b4a-2b93-48dc-b8e2-20fd88c0a8d1 FU 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A4S6-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a4bc7e2ae6e90bc32ee659bb3860b4d8.bam 6186227663 a4bc7e2ae6e90bc32ee659bb3860b4d8 080f8250-c576-4e99-8e11-dc0be67f4e5c 6e2cce33-ac0f-44f4-a406-2a00d1179507 6bcf8b41-7abc-4b6f-899a-1f67b4ada765 672bfaf9-d327-4bc2-8390-55003299eab1 HM 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2IP-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c1948ed7950cdc64cdb78ad9d75abe3e.bam 7403888812 c1948ed7950cdc64cdb78ad9d75abe3e 086d984b-0d78-4bd5-8027-52b10e84ff0b 6cfb3918-ae66-4ee9-8cb7-9734a389dbc5 76b54726-d348-4a1b-ae26-5b08d2effc9d 4c3570ef-d869-4ca0-8f8b-ec346e13e10c EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CJ-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 949eff6fe8a7911389813403cc159641.bam 5061761462 949eff6fe8a7911389813403cc159641 08c4b835-22a3-4d3a-9c03-436fdf173e5c 366c8a6f-319f-4909-92f1-a66f6f7114b1 f8f470d2-924f-41dd-92c5-516b0bf68e44 226e415f-93b2-43e1-a572-bf8e1ce60ea3 C5 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZE-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 32abf93283596ca89616f2d4da149a95.bam 6350625234 32abf93283596ca89616f2d4da149a95 097484a5-cd07-4519-92ff-b63c50fe36c7 6b3cc4aa-e55d-4fcb-bd44-8ebc4f657ee2 5e39485a-ac6b-496d-9984-2ea8075f6a9b 9baa2c92-0111-4399-ad08-8f6169081ae8 EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BD-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7c40e34864e2b2d13177e80096f38143.bam 7585165707 7c40e34864e2b2d13177e80096f38143 0a1c7233-11ba-44fe-84f8-f0d1bfef5161 2a32c706-afef-4a0a-bf1e-381d1d41f1eb cef2efb2-93cc-4bdf-a343-9965e7e0432c e182da4d-0421-44d4-b954-7b616b84762a MY 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3Y-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f89d3e0a2e2f1fdab582a1b68ce5899f.bam 7501636940 f89d3e0a2e2f1fdab582a1b68ce5899f 0ad6d6b6-afb1-44d7-bdc9-38bf71a81fd8 e618cac3-b830-451f-a1ff-5bafadd8a03c 2f261704-d600-4226-90d5-d51ba416b55c 73b25bce-60f8-4f6a-8a23-24191ce2d64e MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A94X-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 48f163a264d55819c86aa8a2ec74830d.bam 6891243985 48f163a264d55819c86aa8a2ec74830d 0b75a0aa-3ea0-47b3-bf0d-50193bc45acf 5f999831-18ec-46bb-a391-54013e9ec412 240ef385-decc-48f7-a798-a81b4ab0410e 5c208b1a-e2a8-4889-97a2-7642f7975834 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KJ-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5f62cd2f8f9c7ff3743d54cc520ce4a3.bam 6382822927 5f62cd2f8f9c7ff3743d54cc520ce4a3 0c10af45-bbbb-4f25-98c1-7aa0e6b8ca15 8741af22-0355-4085-9c09-abee617690d0 7c93642d-7e05-40f8-b1ef-a014edcfba42 f51e97a5-4844-47e4-b6e9-96ad043e31b5 DG 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R8-01A-21D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86bf3eb0b4e960f288e93544d598d981.bam 7635245019 86bf3eb0b4e960f288e93544d598d981 0c1eba52-a921-49e3-96d1-39a717146b27 1fafe3c5-ac9b-46e3-9c98-33b62a219227 d4510801-8ce4-4f10-8b31-25c0a39b5135 6b8e0af3-1632-4fed-9a37-879ea013ae24 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A94Y-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 70f51593c06d2129cf3352223aeafbba.bam 5513400908 70f51593c06d2129cf3352223aeafbba 0ca637f7-69be-4a10-b599-1434fca8e1dc af3fbbf4-5544-41d8-868c-83b5348fdf11 0e7f79cd-d188-42ea-bf96-4ba9e9b8606b f97be3a0-362e-4093-9895-a383ea1399a8 VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GN-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6d81545a5cfb6c93a85d1729d59aad7c.bam 4441509143 6d81545a5cfb6c93a85d1729d59aad7c 0cf2c271-840f-4841-80c1-c8c9d177ad20 5e78de9c-5e9e-4a85-9952-cacd7592adad f727fcb9-e457-4643-9468-f739133b7e9c 7150e9b7-9e22-482f-923b-2203c07bd589 EK 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PL-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b28b5494850965c6ebb15fa6e6047afd.bam 5620791074 b28b5494850965c6ebb15fa6e6047afd 0d553095-abb5-4c12-b6ee-fe9bb6270f3b 29e619b2-5155-4649-a52d-77e996ddeaf4 45cadcf3-ea98-4063-9255-5c18d6a5cbab 62fec159-331a-48ee-a6c4-19de841ff7ce EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5O9-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 972772b96b7ca7d405a7c6a2939665e8.bam 5096856572 972772b96b7ca7d405a7c6a2939665e8 0db5431b-17dc-4209-85f1-4800d2f80560 56bf72b1-09a0-45d8-825a-ba50340c9d28 1636242c-12da-412e-a362-914a20add708 8e088a1e-d5dd-4b3c-a520-dd7fbc716d00 EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RJ-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 889a1fa97c05824c916621c92b1ffb36.bam 4592984468 889a1fa97c05824c916621c92b1ffb36 0de33917-c83f-41c3-b43a-3cae232dc371 eb5fd8e5-83bd-4c84-b0d0-c40c4de434e1 ccd569e9-dcbe-4280-8c21-6bfe4ce60d7a 9492d265-9f48-4b2f-9344-a0604939b23c EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A957-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 742e0e13d633695e8c609137e70b9b1a.bam 6784495458 742e0e13d633695e8c609137e70b9b1a 0de3e58b-fc0b-4148-9e52-75ffd342bba4 f186783d-4e93-41c8-806e-f3d56c1aaabc cb31b3ce-8595-4d75-9436-bb59e95c3a19 805cff10-f34c-4e66-8aae-2539ae4c5bd1 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3QD-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cd9a8e201cf2c457bb9040a2d1d93760.bam 7007374109 cd9a8e201cf2c457bb9040a2d1d93760 0e850880-f0b1-4376-908c-38b43432b3c7 1ec975a5-140e-40f6-8797-4b86e5ce058b 9e2e29e8-d94a-499f-a98a-5b53b2c38f3b ecd247fc-70a8-4c1e-bf11-c0db2ff531a0 EA 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EB-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bb6eb08a1431a0205b008638d9104963.bam 5870272038 bb6eb08a1431a0205b008638d9104963 10aa9617-1fc2-4ff1-b90a-5f55cede88d0 201f1d94-d1f9-4293-8589-dbec412620c8 2c736c5c-9d32-4522-acfd-6620bc291ace 73b8ddcd-0f4a-427b-9a13-549d2cbcacfd VS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DT-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7daeb99a83b506dc0437f6c59a8947f9.bam 5009580082 7daeb99a83b506dc0437f6c59a8947f9 10ff2da2-83a8-432d-a3ac-d1a40676a3ba 6d359d66-e4c7-479a-99f7-38829c1b83bd 46adfbbe-3add-41cd-a388-b1ee0790bf62 0402bfaa-5f8b-456a-8592-41906b3ac253 Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X8-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7d2c1987ff0caa2e8a41cd3fe8a60511.bam 9205721167 7d2c1987ff0caa2e8a41cd3fe8a60511 1180bff1-2ea2-4a1a-bad9-4a8b92d9b803 b69e339f-6b53-4bd6-b320-5bd75e67f193 57902b91-be42-441d-8807-a5ea9c21b214 76f12767-3e6b-4a8a-a6b2-6bd80889fefb C5 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RL-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5db04494568d95a5c0bc4e382c4d5954.bam 8058420263 5db04494568d95a5c0bc4e382c4d5954 12122caf-b450-43f9-af05-7d415295ffdb fda5878e-5f0c-4447-9169-48865e7c3779 61eb08d0-ea01-45e7-884b-ac3d6070172a dd3e80d9-0321-40ad-b963-25e2c94c6092 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-AA62-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fae32cdfcd82b2e8dc7b0e0a68c6e7e1.bam 9574025383 fae32cdfcd82b2e8dc7b0e0a68c6e7e1 132e890a-8ee1-4635-8767-a8667df75116 fd4aed3e-74bb-4653-ac1b-1a45b181756e 173174f8-9d95-40b0-9f88-a4bf4ccb521b 2cbea378-8e25-4497-92e7-1230d90bfc70 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EB-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d704a3b054d00663c0bf5b5867b95d4f.bam 9696187779 d704a3b054d00663c0bf5b5867b95d4f 13925f2e-8181-4cac-8a6e-46bb80a68379 d278441a-d3f3-4405-a56c-8e600542b63f 2c736c5c-9d32-4522-acfd-6620bc291ace c5d3ab5d-8863-4c98-993e-c63a32921a28 VS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VK-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VK-10A-01D-A10S-08.4.bam 16154673264 b2659f3a4b2349cb3ce9f228fb4f51b8 13afabd0-a105-4ec9-bb19-cffa5979128e 50a0ff00-368c-4a4b-bd1c-61c55290fb5d 5ed3c95a-10d0-4cd5-a54d-523e81587fb1 ce68ea9a-1de5-4120-909c-5e4330b61fec DS SRS206891 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A953-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e8bc2fd61b8d6c06c2d5ab0de404bc7b.bam 5714395914 e8bc2fd61b8d6c06c2d5ab0de404bc7b 145bc176-f7e0-4767-8e36-273aaba0684b a3c28c69-7887-4103-9a94-7c0e89401016 da901e97-3a1d-4952-8254-9c4e60d2812c 65730227-e033-445e-aba7-6dfd3ef9df32 VS 2014-10-27 2014-10-27 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A957-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f7ddac02106961d9670265d024158e38.bam 5169191360 f7ddac02106961d9670265d024158e38 145c7632-ef49-4e52-8aba-3b0573472dcc c947a7fb-bb00-42f8-895f-0d03d220be67 cb31b3ce-8595-4d75-9436-bb59e95c3a19 afb4994a-f250-4a04-a918-9f32afa7044c VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A78R-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e241cffd2bdaf0f87aa4afb3eb695d41.bam 5511504608 e241cffd2bdaf0f87aa4afb3eb695d41 14697d39-7cb6-4ff1-9473-debcfcb1b9f0 767b4fdb-0aef-4174-bdea-9cba348720a9 79ae5209-f476-4d65-a6c0-ebc18d7c8942 4e047183-6aff-4211-8bf6-28af7a784b9c EA 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BF-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 814d359a4890c547c790b5097b0f85f4.bam 7257846166 814d359a4890c547c790b5097b0f85f4 14b1c733-2ed0-480f-a5b4-3179ee0c24db e1dd766d-8d09-4066-b1fa-535efff9dd32 4f4e8834-a716-42e6-bd51-60d80a619202 9b53a9bb-c0f4-4b11-93b1-04ea84b8f1b1 MY 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MH-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MH-10A-01D-A14W-08.3.bam 9857896870 d7b0f8c545728e5f8732831798a30520 14bfe24d-0fc9-49d8-82c2-3dda63a3a306 d41f3de8-9eab-4d20-b390-fd0bce1a1afd 3143822c-66c4-4b58-8d29-e92d065ff049 d0b4917b-351f-41ab-a340-3122115c8e62 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1BJ-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BJ-01A-11D-A13W-08.2.bam 16738121140 24d6ebec5b36130aaeda99e1b4c57253 14ce73d1-8ee4-404d-9983-259b98e5299c fbd78148-6bfc-4713-b46d-3a4785e01590 7941d1c7-5319-4e8d-a15f-60b61cb68a9b c7b95d35-7fe9-4c25-94c6-ae6d7416a5c7 C5 SRS203026 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A57G-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a18fae2b151c5f22e63f5de7d8a20114.bam 5283640393 a18fae2b151c5f22e63f5de7d8a20114 1526c108-6f11-47d2-a677-a041813bb0d0 feec64b6-4789-4b18-8664-27eeefb36a57 968bd652-786c-4ddb-a937-dc480cb821fc f91ea887-55a6-47ac-8807-7cd4fb075e14 FU 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X3-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 250c3eef8d7c52a45e6483758ce53247.bam 6114497384 250c3eef8d7c52a45e6483758ce53247 1587c4eb-9c74-433a-a06d-8c9fec3675cd 186538bc-b624-4940-880e-fa08f4055054 4ed1616e-8c62-4104-bcbe-26d7059f04d0 5530afa4-aa4b-45dc-8c6b-c83e570096a6 C5 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A410-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0df7cd4a13235b0f99b3d2aa5a55d8f7.bam 5221804111 0df7cd4a13235b0f99b3d2aa5a55d8f7 15c5a77b-f4fa-4642-b873-54b36aa02c8a fe89a9c7-1d4e-4eb9-9240-ee45fedc26fe 7b356c12-b226-4e58-be7f-44e50e3eefbe 7522576d-1d75-43a3-9ca4-64d425c4e30d EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A770-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 18213041bc152130d661bf2be2e82371.bam 5939501669 18213041bc152130d661bf2be2e82371 15ffaaf2-9f03-4bb4-b54a-79466fa52cc4 32316bce-291a-4783-976a-c5df20f76546 128fd280-9a04-4038-9269-9a945b9a4dc9 f5e6fe54-d348-4e90-9c59-a1a08a43798d FU 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PM-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 377c5d335435ade31ee00639b74f2905.bam 6148678663 377c5d335435ade31ee00639b74f2905 16346961-0a08-4137-b4f2-6f813472fc66 a5228d17-d2d1-44a6-8357-4fa98faba5eb 085fb6d8-6265-484e-9307-8292386714b7 2e7f29fb-97de-4ee0-bca7-6a51c4c3e5cf EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAX4-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 39a02712f64db40456f23d77cdcc80d5.bam 5715811468 39a02712f64db40456f23d77cdcc80d5 16a4e9ac-17c4-474c-a658-8d2f45cc5086 f8ac2ad8-426f-4787-928d-b176ad4e01ca 13d72130-604c-4d79-95cc-53c2e25d91b0 4590d000-d67d-4a58-9dd4-612dc4dcb9f9 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UJ-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7bb2db85254a9e2a4e594906b7f91fd3.bam 5878128201 7bb2db85254a9e2a4e594906b7f91fd3 1776ca74-d7c2-437d-a18e-bc5f96d7293e 1c6d4f2f-d360-468f-aac5-bce5af7c6185 78c62970-4b48-4dc4-9042-5f48f42818ec c0363767-806b-40aa-af0c-035483e3896f VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UI-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f2ca47fdccc2a91d326c340a1d3da4ee.bam 5441821759 f2ca47fdccc2a91d326c340a1d3da4ee 18129153-2d00-47f3-97d5-ee918f2a5fba 03db8232-63c1-43ba-a23d-d3460281f6c9 ce5765fb-5221-4cbf-aa76-bb863803df57 24ea2d5e-66d2-479b-8be6-ae59336876df C5 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RM-01A-21D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eddc943d62c9f457b039686c48afbd7a.bam 6861274887 eddc943d62c9f457b039686c48afbd7a 1847efc3-9723-432f-b091-8a551ebcd70f 801e67c8-c506-410a-bdf0-856a66e974f4 c13215d9-26a8-4c8b-b4fe-5da6aa3222af f0ca60fb-bd45-4f15-a791-0c5b1218d8ef EK 2014-05-30 2014-05-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WF-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b73b473daaab277d422bbe1fcb71e5a5.bam 6737455262 b73b473daaab277d422bbe1fcb71e5a5 18e032b7-6913-4828-a90f-3a1141995ffd 1330e345-c054-4afb-b8b4-ba2bf6615772 d02ffaa9-0403-4a89-be01-cce35c80dd69 14c03e34-5e97-42f5-9789-2a92fb8bbcf3 DS 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HU-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f12a7b7251edfa076987f69fd8a15a55.bam 6659876888 f12a7b7251edfa076987f69fd8a15a55 19b2bea3-aa5d-40e7-b042-f2da0fbdd5f1 1f619d66-ddb0-4b45-91df-6d10a705f8bc 9912432e-74bc-4846-93b4-fa2bf8070bd1 05409da8-60dc-4073-91f0-f91832f3a607 EA 2013-06-19 2013-06-19 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VH-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e197eee84cecad1e059409a7cb96c4d7.bam 5988559322 e197eee84cecad1e059409a7cb96c4d7 1a6891aa-ea30-4961-9ebc-0374cb79e700 8b53735f-6dfe-4771-82ed-13bd7cae1746 6813c53c-b256-4115-ad90-24d75328779e c122e138-3fd8-4687-89dd-775f5876d07d JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1ML-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1ML-01A-11D-A14W-08.3.bam 9777703260 63ea27724e5af26bf74a26c3db846074 1a7599c9-7b5b-44c4-a754-c2fce51c6454 91a214f1-6376-43ff-bd4f-e1ae22fa2315 374f614a-bcd1-4283-ac6f-fc27ddc79987 f5495789-2c61-42f2-b6b6-a14e00d2f985 C5 2012-06-12 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-UC-A7PI-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f4c56c8d5f2a943c21f5f0c7e50985c8.bam 6875584092 f4c56c8d5f2a943c21f5f0c7e50985c8 1af8c290-d6bf-4abd-9ffd-5582a3689378 7512124b-ac68-41c9-9434-ca0ef5482e1d c659f1c9-f3b4-4cfe-8627-2bb716c62b96 9f25259c-40ed-459c-b84d-82c025bfc999 UC 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-AA62-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6369ebaec7c75bf1e7b248e320086179.bam 13572200495 6369ebaec7c75bf1e7b248e320086179 1b220691-281a-4ed2-bb63-e8c71f1809fa 72e8966e-2481-415f-8157-af9d6030bb36 173174f8-9d95-40b0-9f88-a4bf4ccb521b 36425d33-2055-4f43-bbec-d8f22ce31aac VS 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A959-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eb5da89035eb8e7ad7ac82717fa46775.bam 6611922685 eb5da89035eb8e7ad7ac82717fa46775 1b8a621c-1de6-47ba-a4c0-79f9e5eddc06 fec1fa81-3e71-4031-a363-cc6ebbddfbdb f2bea37e-0d19-49e1-91a0-a4de4dfa2d35 d1894791-e427-4db9-97b2-a3b73a4e8e30 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A5QV-01A-22D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e9429534fc68c39726fa95374fb2f43b.bam 7388696519 e9429534fc68c39726fa95374fb2f43b 1c017b08-6f4d-477f-9410-6c6058c3af8b 915825bd-5ffc-4cca-a0c0-5ce6809dad1b acf5cbf3-09ca-4f4d-a44e-1792613190fc dbf0af15-1463-4884-94d9-959ea3cabb67 JX 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A23L-01A-11D-A16O-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-FU-A23L-01A-11D-A16O-08.2.bam 10578346170 d704819335f14208cc1966cecba3a1d3 1c4ac0cc-ac4a-42ef-afb3-e501d9e5476f 99551676-a16b-4a7c-84a2-571731130d86 86731af9-2d33-4521-9cf9-5f6152ca15d7 7748115f-bce5-4932-8bbb-ae0d96725f37 FU 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-IR-A3LA-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 20e8a3e70f699221fcedcb31818dd250.bam 6188549958 20e8a3e70f699221fcedcb31818dd250 1c77d6c8-5639-4318-bbd6-0a54f7775233 618a9c00-9d35-4a6a-9b03-261f30d75897 7b8c04d7-824d-493d-8f2c-9ed87a907192 7925ea80-8aae-4d99-afe2-74ad1aae6d9d IR 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UV-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2fad624c3fd5eda57b8bbaeb7c902cca.bam 7323050100 2fad624c3fd5eda57b8bbaeb7c902cca 1ca54435-6c6d-4dc6-a77f-87fa55f0ff55 de145e5a-2718-406a-9087-3719683d261c c9e4bac6-0cac-4fca-a548-527deac5b880 60817f05-7c77-4631-a77e-d7a018aa1a23 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-AAVH-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b87f87504b3819de2b964457adc1c0ff.bam 7145553575 b87f87504b3819de2b964457adc1c0ff 1ce8fca3-2ea4-4c4f-8942-e3b720bbe722 3cfe99c1-861f-4719-bbec-7c882b042023 1c0b5c18-8760-4483-a88c-1d1d89f61998 f5a7f638-f35d-46a2-af49-3ffef7cbec47 JW 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BK-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BK-10A-01D-A13W-08.2.bam 18385584456 14400b567d5b7044f92b424cafd700c0 1dfae944-d2a1-4aee-afd3-8e251275024f b0555c04-f588-49fa-938b-7b031157e11b 7df6c297-f2d6-43ef-973b-1f95676b0cc4 261c12ea-fd35-4c1b-9615-b91e160e7eba C5 SRS203041 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A6QX-10B-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a826bed38c09e6fba4fa8bbea130f13e.bam 7207248789 a826bed38c09e6fba4fa8bbea130f13e 1f9c0330-5d8d-4b55-95a9-d0b486d751a2 6f0a4ae6-186b-46de-b2da-a87dd33725a2 a300db40-e0b8-4c45-abbd-d7aa06211e9c b4477a58-5b29-408d-8dd5-dc5123fbc390 EA 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A69L-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7e55919974d507fc0f5acd112121815c.bam 7363624300 7e55919974d507fc0f5acd112121815c 20115262-d64b-4d16-813d-41d08ff195b2 cbfb312b-35be-4631-be58-94556dbe866c 6dca2a6f-7f2c-4524-b528-396a889b2a3f a48eee9d-68c6-4675-96ed-c860139d779c EX 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PG-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c89c41ad364442929dba79a0508def59.bam 10728995581 c89c41ad364442929dba79a0508def59 2099de7e-3d5a-410e-a7f7-dc98b15eb8da a1eccef2-4d5b-4752-b42b-5541c55a8741 53d99a89-6ebd-4637-91db-7ce43ebc6b8b 15f86bec-a427-40f4-af72-9a61bfa4e445 UC 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VI-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5549114d1e2798b9609db8deccfbd8bc.bam 6280297434 5549114d1e2798b9609db8deccfbd8bc 20fe99ef-316b-41eb-9b10-8814a1334e8b 4cf0c64a-057d-4e79-85f2-dffc58753ffd 53eb4c4e-0719-476f-9b2b-279d438d7710 743df838-a32f-40f7-af1a-5331c62d1d6e JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LK-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7def068cc1de3627a7445181b44df900.bam 5920538667 7def068cc1de3627a7445181b44df900 22703010-a77d-4c6c-94b0-fe0c279525aa 6eada57d-b416-4e87-bd23-64a7c4b7da4f b79558c5-1db2-4b1e-a7b8-efbd19aa855e dd471c07-b1bc-441e-8fee-8df228eba7b3 IR 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73P-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 365cdd248c35f915d9eff9a090b39896.bam 7579376836 365cdd248c35f915d9eff9a090b39896 22b3df5c-0cb4-4e11-a048-2f8204ea9e8c dd9fd43b-adc3-44ee-a69a-f5d3215af715 3a3a9b5e-12a1-41f5-a54c-d4c1e0eccb9e b0377dfd-622e-4d65-b2da-2499f3c8e5c8 Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R1-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 132efc96e630dbcdb3cb2cb0703a137f.bam 7186519100 132efc96e630dbcdb3cb2cb0703a137f 22c8e850-c73b-4410-abd0-969061eee67a 43f1663d-29b7-4653-ac53-0b2a724ed57e f93ccd2d-3c77-4bd3-8cac-5203bd57735f 4913cea2-4243-4cf3-a0a0-b38e92f29ede Q1 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QF-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ad5cde4c00727d0d58b9fce681f3a7ea.bam 5688335468 ad5cde4c00727d0d58b9fce681f3a7ea 23045164-0ff1-4222-a11b-ab8961e5ee87 bef3823c-9096-407a-a811-94bd4d5c2e54 21254cb0-68f3-4ecc-8d9a-73fb0e994c5b fc7e94ef-9dae-4e71-9673-63b8cf8919a4 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EG-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d249c9603cab4f8cdd1a0375fbe0a07b.bam 6560813380 d249c9603cab4f8cdd1a0375fbe0a07b 2331746f-92e4-4634-8b36-737c8d1d2d1d d4ca11f0-eb34-49d4-8b49-c0d7833c5d96 b0b293c1-bd7e-4ba8-9f44-47398488ef2c 2d433014-1b56-4790-8c83-6ffa37040d9c VS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PG-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a09226416febd6d193bc89e997a08e6d.bam 5317623457 a09226416febd6d193bc89e997a08e6d 23d28bbd-b14c-4092-b313-3949c09f03f2 b4ec4b14-3c54-4fc1-a202-7b6b2efbea5c 5194a247-cfee-4c11-9475-cf5521a8c6e3 78fbefa6-ff8b-4011-bbe9-621abae27c66 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A5U3-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8124cd2d1f63991379ac49f067e2d467.bam 4726898151 8124cd2d1f63991379ac49f067e2d467 23de3e89-c299-41d3-8c5c-394af9ac94bb 83db6019-579d-4875-a935-6878ed5119e2 1399d31d-9d5e-441a-b400-8b8a92a6ff8b d314fb5f-fab3-4bc8-b294-217ba6e73cb1 LP 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3X-01A-22D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d5b858b1a9bafefdd9b575d78055120c.bam 4753971798 d5b858b1a9bafefdd9b575d78055120c 23ffd531-08f2-42dc-8396-b4d22477a7e4 040e7d91-bea3-4de4-989d-d5a643c41a9a adb7c5c8-4afd-40dc-89f1-571fbd88e4f9 8fc32f98-8bd2-4f9d-9039-c6092145d1d3 MA 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XI-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9af27bf34b33b6775dbf0c19b79d4e85.bam 6687429217 9af27bf34b33b6775dbf0c19b79d4e85 24b5156f-44b6-4058-8847-a1ffc11641a8 a5109a63-2837-4e14-9700-ee23eabeecf7 959fe574-054a-4fef-9cbe-a801a9a355de a69e5235-b458-457c-807a-1cf5e907b869 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2GZ-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 27cf2f92732fe848738cfb805c2d0b03.bam 7608617437 27cf2f92732fe848738cfb805c2d0b03 24befcfd-220a-4e0c-abd7-83ed700e9b5d 011036d5-7495-4d6f-9294-edd6cf42d72a d7f07485-522a-49d9-b105-5a9a51aca8f7 5686f844-be97-472d-8564-a35c3a3ebac2 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A3L1-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bcf5a8690479381edf0399b98a1cc483.bam 6470316356 bcf5a8690479381edf0399b98a1cc483 2535e2b7-ea81-4d2a-9e2a-8c4d56946a00 b42c3a13-affb-44db-b466-d88d9f3a5630 f5d90810-8c4b-4ced-9360-383e42cb54b3 92f592af-39f4-4772-83ba-83d303bd1d60 EX 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RE-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 68e077ee5e55c24b63f623c7590dd26a.bam 6252083424 68e077ee5e55c24b63f623c7590dd26a 26d746a0-e7aa-49bc-b13e-4daa646251a0 96ea0b20-0da0-4bdd-bbf0-799b981e778b 9aa36ac2-8418-4109-a3c1-63ca8742baab 7bcf54b6-3ffa-4014-92c6-51a7099e6f02 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A7HU-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0a4d6481339d2171d846c101e2fbffb6.bam 6154553831 0a4d6481339d2171d846c101e2fbffb6 26eb04b6-b74f-42a2-876b-9e21a3d03168 25a5b3f8-5354-48e0-a3c8-05268f2075ed 7067b7da-fb1b-4827-8fe6-9433ed672d3b 40ccd963-2f0a-4fdc-b793-9e202bc21394 LP 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LF-01A-21D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cb8baa47b7f5ee3947c85d287ccab79c.bam 7138227817 cb8baa47b7f5ee3947c85d287ccab79c 27889888-5ed2-494c-b957-c7f21a5692c0 224b26b0-dced-4b5a-95c1-c5d4c2348b07 785ddea1-399d-47d8-b2b0-39e95eaa24b5 b6a74a02-cd3b-4f0a-bb2f-f90c1d3f6d14 IR 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A5RQ-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 61e2e09b88005aef9df903319565d268.bam 4126601881 61e2e09b88005aef9df903319565d268 279192d7-20ba-4733-a584-9b02b21783c7 7e823717-75d0-4121-9743-ba735bd6832f b16469af-a721-43e9-a4d7-c39b94d1139f 1c93033c-aa43-4f75-b299-7c5daafd226f DS 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PD-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6c1eaafa94b224fdc640b1fdde5dbd8d.bam 6911805286 6c1eaafa94b224fdc640b1fdde5dbd8d 27aa8ede-6e8e-4371-84fb-2efd4f4239e3 1d689a1c-66ac-4995-82ee-a1d9ea8263b0 0f18ef74-019b-478d-aecd-60cc715bfdb7 d3290464-56eb-49fa-bb05-3ce45978929d UC 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3X-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f2bb5ba4c2be0dee5763003ae6a70398.bam 6654943146 f2bb5ba4c2be0dee5763003ae6a70398 27bac3ff-82f2-49a3-80a9-09fc5772d36b 9764d04e-244f-417d-a9c8-6273dfbc2aeb adb7c5c8-4afd-40dc-89f1-571fbd88e4f9 029dd926-f405-4505-bd90-9fa612f565fa MA 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3HY-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4df72e3ee9ffc4c72cf1d5af42b8a238.bam 6748482187 4df72e3ee9ffc4c72cf1d5af42b8a238 27cbb128-1497-42e3-82a7-6318ad508539 36599ace-d4cd-4bd1-a917-76ec50563e9e 674e010c-7ad4-4dc2-86b0-284cd4560633 a5879a60-aa8b-4da0-904a-9ffe2968418c FU 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V3-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7353ad9ed82b5ebcadee53809d9b2ddc.bam 6740433707 7353ad9ed82b5ebcadee53809d9b2ddc 283a2761-b06b-47ae-8bc9-7f19144e8922 50d5a0c5-1c4b-4e20-90be-51879bd364d0 1cb1d2ca-dfa6-4c42-9da9-c711dc5aab5d 44353b5e-6724-469c-bd25-bc1fbfe634dd VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UR-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eda129aea0ac0a1cb5b1d334168714f4.bam 4976861948 eda129aea0ac0a1cb5b1d334168714f4 29941b7a-2b9a-4110-98ee-2cd47ea0a8e1 d011ec85-431f-42ea-bf23-4fe51e2235af adc60720-ac20-4e73-9c37-3ad3119c07d6 67211d18-7858-4234-9af6-ac99136de6c9 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QR-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f40758f74e5486f8ce125d1c799e14cd.bam 6598206073 f40758f74e5486f8ce125d1c799e14cd 2aca3a3f-64f7-4e63-b39a-79b6e18714d0 741a10a4-8e41-4c4f-bb7f-9186bb035bbb db44488e-4ed0-4082-bca0-bbfd22ff0537 7f18d32a-281b-472d-ba6b-37458a904f8d ZJ 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A44S-01A-12D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f032036df8bd2e64ff18af19f019a214.bam 5578542899 f032036df8bd2e64ff18af19f019a214 2b6d7c79-8b69-45be-9245-01672b99b122 2c6a1b4c-b430-4670-aa45-87deef906452 cfb61fd8-0bca-40b4-878c-cc914a289792 0d96e0b0-5abd-4528-a733-354308e0cfef EA 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WH-01A-22D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7e96cd032d90584f6f0f45b6829e4e97.bam 4768218238 7e96cd032d90584f6f0f45b6829e4e97 2b96bc2f-cf22-4f0a-99fd-00e85e109b34 c1b9a90f-1b7e-4ce1-955e-d67478395417 dadcf6d5-03eb-4090-bcc3-b9e9dc3c7e08 b742714f-55c2-48b7-9d4b-667f82056f68 DS 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MJ-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MJ-10A-01D-A14W-08.3.bam 9159472453 5b28d23299f36b6982f44656dacb004b 2bb65316-9e92-4b93-b2e4-eb8d89b7e736 b6cb5ac1-ed74-4096-b0f4-9960384a128d 23f011e2-c025-4494-8016-2140cc8d4bce 5526b07d-d091-4034-9a99-40cac1fe466b C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9V1-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3160caef6c848e811e1f9a452fc2366e.bam 7024831661 3160caef6c848e811e1f9a452fc2366e 2bed0426-f27d-4cef-ab00-74a8a57e639c 426616e4-da1d-44cb-a12c-030f5a818769 a6a07bc7-ab1b-429d-81ed-d7a890c88e51 f9668be8-b3d5-4251-8415-379e52818238 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2GZ-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b4c5b2de48b81027fac188e6c29712ec.bam 6941522480 b4c5b2de48b81027fac188e6c29712ec 2c39d655-549c-40e1-b535-19303ebc7aac 0c7a6420-3ad0-4790-9c3b-2139d4edcc0a d7f07485-522a-49d9-b105-5a9a51aca8f7 fb6d3454-efc5-4e2f-89fa-70aa6114527d EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-4J-AA1J-01A-21D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e67c78313b2bf9fa2f8ad9a664e45cda.bam 7910082763 e67c78313b2bf9fa2f8ad9a664e45cda 2c665e6e-e5cf-4f77-8060-efd2bc6ae961 45cc5613-9ec7-4dc1-9e4f-b35b3a222cf7 53eac147-7eb8-4c54-a982-5e058d6749f8 189e0024-c636-48cb-b423-3b3d6bd0caaa 4J 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XK-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 536ebecb6e57f6873a56f05456cbc563.bam 4249957887 536ebecb6e57f6873a56f05456cbc563 2c7a0bcd-2cd0-43e6-ab20-8d1037667bd9 dffc8f8f-0e39-4f38-a745-9a1455472952 8ac819b3-4227-4eae-be03-8760b197df9a 04d6f4d9-b20a-4b4e-9511-7ecb90ce9515 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R2-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eb0f0ac8fbe80d63272d93326e9cbb1f.bam 6082371980 eb0f0ac8fbe80d63272d93326e9cbb1f 2cb922d5-ed59-44ed-810d-3d210f8aed21 c14c1b6f-f669-4562-962e-943f192674a6 f3cbadb3-3b83-47cd-b8a0-b0e10343a295 cc7e7631-8c2f-41da-81ac-82073a7ab5d7 Q1 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R8-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d7362b45c2cb4837556d20b6275eb4cc.bam 8037540690 d7362b45c2cb4837556d20b6275eb4cc 2ce41895-2147-488c-9ebf-fafbdafd2797 1ef5ec74-19dc-4584-b0a8-edf7c5fda245 d4510801-8ce4-4f10-8b31-25c0a39b5135 0c67f012-629a-478a-8836-646272637695 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XK-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 76e45595077a11a28987dc1329821606.bam 5922997171 76e45595077a11a28987dc1329821606 2d2bbdfc-3de5-4919-a7e3-2654fd7cfc87 b0413c9c-52ea-4819-9921-c5a6c18bb400 8ac819b3-4227-4eae-be03-8760b197df9a edbcf0c7-e8c8-40e9-8170-bf91de078f5f C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A410-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9a6634616aaf1a4f289986b55cbb3ac2.bam 6582231697 9a6634616aaf1a4f289986b55cbb3ac2 2e43340c-f833-47d3-8198-859c7e0f9477 e61d3ec2-0e57-49d6-9def-db06fbd63f1a 7b356c12-b226-4e58-be7f-44e50e3eefbe 7396043b-2ba2-474f-95a3-72da70f10e5a EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QO-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4d264a15f44a6c76daf2a25311b2fb5d.bam 7583198692 4d264a15f44a6c76daf2a25311b2fb5d 2e4aa78f-325e-4cc6-8d9c-6a0fbb90b499 f4482174-bb1b-4253-9b3d-3ca233d011a9 eb3ba1fb-8254-4c02-a982-507f075cbac1 9e9b2fc6-15f5-42fd-b72d-3ff3297887d0 ZJ 2014-10-27 2014-10-27 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UI-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5d44d5795e8c9d00cd50bf17bb738642.bam 9765238562 5d44d5795e8c9d00cd50bf17bb738642 2e55d985-aeb8-4fb9-a107-4740bbdd61cd 0905bb3f-bb00-4fa5-a861-f71f25d2b78a 9c516d28-bef2-4334-bdda-97950bd95ac0 f6391485-7528-4719-a480-167b1cdb2ae6 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7XC-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build faf0f8178c3c4154121f9c673ce81eb7.bam 6622209515 faf0f8178c3c4154121f9c673ce81eb7 2eb117c2-70a2-42bb-8dce-11b05ebf1042 2da6ce83-78c0-40d2-9d8c-dbd55264ea85 dedfd5fb-3c72-40f9-a7ef-52c2176bf662 e8355ff6-e927-4a35-a9c1-512442279a10 C5 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3Q8-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6ab34ba44a05cc3f41ce7af3fb9468b6.bam 6196091761 6ab34ba44a05cc3f41ce7af3fb9468b6 2eb7d6ca-6e77-4c5a-9147-7e6762c98570 4fe4de09-aaf1-4b8b-8708-e41c19c23cac 34629eb8-0c5e-4910-8e13-bf7d6a1e337f a5162279-45ae-4031-b119-71a8c934918f JX 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A78R-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e173a5fe513dc6e92e1022ca0e0074a4.bam 4847031019 e173a5fe513dc6e92e1022ca0e0074a4 2ee23055-3f8c-4121-9997-19916502ebdd 8ed78eb9-423e-45b8-8007-22d00b35a620 79ae5209-f476-4d65-a6c0-ebc18d7c8942 34b0a81d-9155-446f-8f40-5c1dc65bbb1c EA 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A907-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build de71cdba66a51708134d5f5a9537632c.bam 4107992024 de71cdba66a51708134d5f5a9537632c 30170130-4bc2-45ee-b50d-790ac1ae4926 0e2bdb7e-325f-4312-a9ef-325243d34f4f c92696ba-f549-480d-8d4a-5f23b27aa336 b5495329-a954-4bee-ae9c-9bc909acd1c1 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LV-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 27e073f87258b85d2d72efc7adf672af.bam 6592328268 27e073f87258b85d2d72efc7adf672af 3072ae14-5220-43e7-87d6-af5fb3a8c1ce 28fa35ae-f144-4ef0-918e-fe72471c8101 00bca18c-b3d4-45a3-8f19-034cc40449a4 6feafb61-d586-4e88-84d1-dfb715aefdc6 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UU-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 28034a83d68f79f29631063a85718ee7.bam 9536007434 28034a83d68f79f29631063a85718ee7 30e3f0f1-1195-424f-8cc7-992d83cfddb1 06aebd71-29a6-41e8-af09-b3e09652b902 4770ec81-9174-4d2a-af54-70c00696fb0b ba357d05-8eb5-4a58-9ef4-4720cfbc1868 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UB-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 637be76a59850beb9dab2e97416afb09.bam 5484417851 637be76a59850beb9dab2e97416afb09 31147469-18bf-40a3-af92-6dc185e2ccd8 bba17ee3-b102-4c2a-9ac8-6278cbed8582 ca242b4c-b879-4e13-a1e7-84c984067189 75b41b7d-be0e-4def-96c7-c83937111d5b VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LL-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build abb2445df163d307960f469837fae2fd.bam 4196271550 abb2445df163d307960f469837fae2fd 31341d85-00c4-4a88-970b-7386a1b89b40 8788027e-3464-4a19-896b-4f5c3dccdee5 7c4ab1ca-4bdd-4ef7-9a42-f6c0c7136d26 a0fb972a-ce8f-441f-8707-c3cc1081dee0 IR 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A770-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 55d2df744993bcfe847851f06ae137af.bam 5674686016 55d2df744993bcfe847851f06ae137af 3171f24d-3d16-45b7-b563-ea759454f88f e7037ea0-11e6-4f5d-9d78-3ee3c13dfeec 128fd280-9a04-4038-9269-9a945b9a4dc9 9eeca3d2-aded-4f64-93c8-77c4ad4d87c0 FU 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LI-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5fe146cd9c6c86d07939f861c4f88dc4.bam 5106764836 5fe146cd9c6c86d07939f861c4f88dc4 320cbe1b-2795-497e-9c16-e0e5051cebd3 5c21b027-1850-4ea4-92e7-8a7e863b86b8 75bc22d8-738d-45f8-b6c0-c664f5fef47c cbe595e1-116b-4745-9cca-56df1b8806e7 IR 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OB-01A-11D-A16Y-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OB-01A-11D-A16Y-08.4.bam 19636304115 a51f1d7b5adfc09be94d4d144c853c96 326f0151-40b4-4b17-80aa-64827559682c efadb017-3d80-45ca-accb-896cea21c2cb 29a48c93-bade-4346-a901-de35a6537337 d664c261-6c5f-454d-b908-334dc2683a2b DS 2012-06-05 2012-06-05 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1M9-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M9-01A-11D-A13W-08.2.bam 17723395715 1390d985cbb32fff8a1be66cff8efbba 336fd4e9-b508-4ea2-a08e-2090206471c2 70e4fbc8-094d-4493-8bf3-d28395d721e1 a3be445a-a592-4073-815b-47ae41f9c4a0 577057af-7775-497b-bee9-e04562648509 C5 SRS203098 2011-06-21 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2RM-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b5c2412206cbbe41dd2bf0c7d89124e9.bam 7513839782 b5c2412206cbbe41dd2bf0c7d89124e9 34372b13-8f1f-457b-b626-0ff74efda990 b2a9b6b3-8ae5-4da7-ae2e-02cb5b0390b2 c13215d9-26a8-4c8b-b4fe-5da6aa3222af fe891cd9-ae0a-4242-8a56-b5d6d2b85b43 EK 2014-05-30 2014-05-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GK-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a513c8bb00c59cf527ef0e6226f78737.bam 4701023643 a513c8bb00c59cf527ef0e6226f78737 3455e620-0691-43c7-a82b-52c52f992af7 52a083c8-1fab-4231-ba39-ed198964c290 d07d0a56-a25e-426b-8384-9d49e6545527 f9371b06-c6e5-4363-bdaa-bd85f95a01c4 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VM-01A-11D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VM-01A-11D-A10S-08.4.bam 16242348923 3d61f58f536fae9ba5de47afd10b9860 352f86d0-ffe7-4f84-a4b9-8d933cf7fa0c 70fd6f1d-ed8e-4e5c-84b6-70f804ed304a ed6d989d-da09-4818-8fed-f33d88b628af 52c90714-b4ed-42fa-8763-914140308ffa DS SRS206903 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A8YT-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8cebc3b5f0b34d86020946a4af17dbc4.bam 5780073281 8cebc3b5f0b34d86020946a4af17dbc4 3539cb5b-8f96-4358-b690-cf28cad31272 de3eb6b3-db0b-4672-9aaa-7fca76742e6f cecaecb4-51ef-407d-a882-0e4b444b0a77 575df574-6342-4c62-933f-bc44be4a0633 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BM-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BM-10A-01D-A13W-08.2.bam 15243470104 ac19b988b53cc531338eadc043242195 36169f79-bf28-42ee-8fa4-04a765018faa bcf97f0d-dd63-4c01-9eb7-3c42ee52fffd 7fb8e7be-4118-41f8-b785-5cbb0afdb8b7 79fa29b9-822f-4b0f-9108-50e65cd943ca C5 SRS203059 2011-06-20 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-MA-AA3W-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8b535742a998ff4f77f7a927cb4d6228.bam 8238055298 8b535742a998ff4f77f7a927cb4d6228 36d70a3d-3289-4bbb-9c8c-2c8b2b4b33a7 a3f531e6-d627-432e-97ab-b34731b3e5e6 fc2bce29-4685-49f5-b901-2117bf673bb8 a047fcfb-307f-4548-9ab7-2e2336ed17a2 MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LH-01A-21D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 40f7fce159955ce77410d6b208cd7294.bam 5545492078 40f7fce159955ce77410d6b208cd7294 36fced40-31fb-4aef-8661-4952fc345fe1 5be7200e-4af1-4936-8f1e-5ada6dc89179 f24ed9c0-92bb-4003-86d2-42ab26617a05 d95e5389-dd55-4d55-ab01-6a770c66502f IR 2013-08-16 2013-08-16 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RN-01A-12D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 904e62aa0c337fcb865135f832c8eed8.bam 4753402253 904e62aa0c337fcb865135f832c8eed8 374161e1-785a-400b-b661-01abb3b1d8ce ff6778d0-314d-4e6b-abf8-e60c3308c539 b610d391-0c9d-4114-94d6-5e4aa4270122 24bacabf-8c6f-416a-b1f3-b0baaa2f0ad9 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QM-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ce0120949220cac24c911d7662f0be92.bam 5031546291 ce0120949220cac24c911d7662f0be92 37769220-5703-4f2f-894e-ae66a722412f f4b637d7-80b1-48f7-b04a-854475adef82 27d2b645-f1bf-4486-b0b5-273681b58625 9992b93e-8ec5-4f2b-9930-cd82c14f5569 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73Q-10B-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eae73cd2e1cc84cfc55f6efba8a1c1e6.bam 4920255211 eae73cd2e1cc84cfc55f6efba8a1c1e6 37d01447-2118-4549-a8af-097ffdf54dcc 19807cb3-c66b-40c3-9f44-e9d268c8d4bd 5c72bda2-2ec0-455f-ab27-7247fd5ffff9 142a9c86-02c4-4df7-9fbc-57ab52930bba Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DV-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ba40c1c4fdddee58392970fb1c95f24e.bam 5520679771 ba40c1c4fdddee58392970fb1c95f24e 37d682bb-aca9-42f2-a639-8a2ab0afe39a b8796c74-495c-460b-9787-199170dfef8d c80f777e-d150-40f3-9fa9-02ef9a6d7692 f717f1ad-0582-47e3-a337-c39e0d837f4d Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CO-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86f489add351f6226dd55936f25d64c2.bam 6293859682 86f489add351f6226dd55936f25d64c2 38047435-d965-4fe5-82c3-36b12c829fe2 da3d48a2-3f68-4e10-9fee-03115d41e633 ff3808e4-eece-4046-819b-fe1019317f8e 562dbeca-f85d-4b58-8802-b09d0dd161c1 C5 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RO-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e242542be0527ddf0d91a77152a557f6.bam 7268476818 e242542be0527ddf0d91a77152a557f6 38445a94-320a-4891-bd3f-9901dfb7c7ef c386a7c5-17a6-449d-9a30-7066e3c23e6b c996cffb-8132-4973-987d-143274b6a081 21813721-b033-4030-82e2-f12833cb7789 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UT-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9174de4b567bd84b1079daf36ef7c3a8.bam 8136110251 9174de4b567bd84b1079daf36ef7c3a8 38b780ff-8304-4858-81dc-b5bf588b9b61 0e1e6250-7d44-45ca-ab92-a3b741a44933 a945fd96-ffb3-4787-bacd-60da4560c8a5 c772bc85-f358-450a-8693-899eac419271 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BI-01B-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BI-01B-11D-A13W-08.2.bam 18477887352 555bf418b166c32748099f97a1a858e0 38d1b82a-0638-41a5-8403-81bc7ffd3cdc 57a1e38f-6b77-40ae-91f0-9f950e57fe03 91310434-2a99-4e1d-81e6-3d58d097089f e75716d2-39cb-41d4-9e14-3718e9639c96 C5 SRS203017 2011-06-19 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1BF-01B-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BF-01B-11D-A13W-08.2.bam 17782608169 81d84f4d1f2d4422e14ab02859a14959 3973c1ac-7275-42bb-8190-0eb1c2541eb2 787570f6-4956-48af-afef-71adc28e3e31 262311a0-7a10-4934-8fba-11ee581ad738 37670db3-74d9-4176-bc34-65d2e062d1cb C5 SRS203008 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A4BA-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e8c13bce8f73b08085f874f52df41603.bam 7228895200 e8c13bce8f73b08085f874f52df41603 39b7b445-ea8c-4d04-b577-f920dca6f0ca 064a0bfd-273b-4043-a48b-323703069f1e 9e79059f-3453-4aa6-9849-55a267c711a4 c49c9269-aa6b-4e0e-abad-0f5e7df171e0 EA 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AB0I-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 38c40366258a54ccba9765f7d4288457.bam 10190203291 38c40366258a54ccba9765f7d4288457 39bc48bf-bfbf-43f1-8762-02c8def8785c df48f03c-c821-4f2f-895e-8a881769749f a4f13656-a941-498a-9ac9-f020ed559b35 91e7aa6c-3424-4e98-a4cc-8c6d3474ed5d ZJ 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A556-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bd14966be2d361c4dab3d339da8b0ea2.bam 7343328689 bd14966be2d361c4dab3d339da8b0ea2 3a733648-7ab7-4af4-b516-717004a1ae59 1c425e47-7f54-4c68-9be6-d58b4b980740 2d34e9a3-298c-4365-b7a1-a507c7f069cd 2cae861c-a035-49e8-9dc9-977f2da23137 EA 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KK-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e044330aad5fcf2021b72594c6dad66c.bam 7981560966 e044330aad5fcf2021b72594c6dad66c 3beb28aa-1fe0-4d94-9ac8-faeca4b12a5f 78621820-2b45-4adf-b5dc-fc093a302208 8dbcb17d-0396-4faa-9b32-8e2566424bff 9c102289-0fac-4646-b2ec-ac1037e54536 DG 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A556-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7146cab4ad93164a008fb4499d0ede95.bam 7842961465 7146cab4ad93164a008fb4499d0ede95 3c8b9609-1067-4264-ac77-0bc86c424dc5 e6f0f4ac-02bd-44c2-9190-a1f437b2f83c 2d34e9a3-298c-4365-b7a1-a507c7f069cd 40608785-ee17-4a6a-8f61-f83b4a69ea7f EA 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HF-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1dab620ce7fd12477460b29c94ac03fd.bam 13573251420 1dab620ce7fd12477460b29c94ac03fd 3ce1957a-cc2d-4dea-8d1b-638bd3bb89ab 0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41 085df27c-9bc2-425a-9a49-547d692ea028 8ef5e6db-2fbd-4d96-846e-7708c085e72c C5 2013-06-08 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VM-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VM-10A-01D-A10S-08.4.bam 17162109733 b7a45f2966be762705607873729dc5ef 3d29a47d-957d-4076-a127-5206871994cc 3382bf29-050b-45a8-93c9-c99354871db7 ed6d989d-da09-4818-8fed-f33d88b628af 35c77b35-7f1b-4589-b985-c0e6cf25ded8 DS SRS206909 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A5FO-01A-21D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8ca85f98c6fb3551f2a6cbbb1428d06b.bam 10597565963 8ca85f98c6fb3551f2a6cbbb1428d06b 3de6420b-78d2-41bc-bc44-ed8c93889d6d 1a852e70-6552-4734-876f-ceb4ed421833 ed17685c-b706-41e4-8a76-11cb0e6700cd bfcb73ba-363b-4dc3-9b36-246043e43f12 EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V2-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c7f50ef741d6634776aff5991655e46e.bam 4613000873 c7f50ef741d6634776aff5991655e46e 3e2ca73c-b10c-4db0-85d7-2d16c954e6d1 46f06dd1-0675-4f3c-a4b5-5eb98103eda0 03804f9b-df7c-462c-8984-8eb3a5ed4999 d6b3bd61-45c1-456e-874c-b3f60e1305a0 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EH-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3d6b8d3eb2b572e79b17883b178f4d73.bam 6389647308 3d6b8d3eb2b572e79b17883b178f4d73 3f581fda-a4c7-4395-bc09-f82083cfb865 f1e4b431-8c6d-4772-97bf-a3eb8b9cb390 05026179-b1da-411e-a286-89727b1ae380 3571b0ef-cc66-4852-b8e6-63efec5f5dcc VS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3PZ-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4b6c6fb5ae171eaf6dda053043de8b5a.bam 7075870632 4b6c6fb5ae171eaf6dda053043de8b5a 3fbe2475-29eb-40a0-8e95-d83e44cebb87 a37dd07d-ef81-4183-904e-1cdb09139d9b 3df6abe2-2123-4bfa-a4e4-88df5f940c04 bfda8ad6-deae-44dd-bafe-ba82787b90b2 JX 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXT-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 81b203b30b98899ae1decf51a58ed64f.bam 7605297920 81b203b30b98899ae1decf51a58ed64f 3ff1a6ca-8a65-43e8-916b-a3a256b6d705 81f437b0-6bbb-4a06-9346-176a287f83c4 5916af71-0262-42cf-af4b-eac830a8b419 e9030cf0-3baf-4658-8d88-a1d458589c4b ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CJ-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cbb7d920c8a4b85b114ac8a888501e12.bam 6937465492 cbb7d920c8a4b85b114ac8a888501e12 408a16cb-e7c8-4f24-9bfa-50fb9bd47648 d1169c82-e50f-40d1-914f-b4d8c93a7a3a f8f470d2-924f-41dd-92c5-516b0bf68e44 7e1eea3a-3ced-45dc-86e7-43867738bf49 C5 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LK-01A-12D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b757e4a6dd764dcc27c60bf847ab9c9e.bam 6365736424 b757e4a6dd764dcc27c60bf847ab9c9e 40b7e50f-d714-45c8-aee6-4c4466a09b4f 3d8718ef-47d1-47af-9dc9-55dec391d913 b79558c5-1db2-4b1e-a7b8-efbd19aa855e dca9ff1f-dd32-43dd-8fd4-446d014f5db8 IR 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V5-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 89516bf010fc0c2b4025f96acf566041.bam 8021831914 89516bf010fc0c2b4025f96acf566041 40d58c03-8233-47d4-80ba-eb98f82e4422 1585b406-687e-45aa-9da9-c028720c7370 d3ff2aeb-46be-4f54-8a8f-178eb921fbb6 47ba0566-1ec0-4d9e-946b-2a55eac0652e VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UV-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a42cf9c050bcb1bec27e974fab3aa06a.bam 9091856407 a42cf9c050bcb1bec27e974fab3aa06a 413538f3-9b31-42ed-8a67-da9a219d9927 ed87fce7-7e3e-4fa8-a1db-f3bd024155e3 c9e4bac6-0cac-4fca-a548-527deac5b880 1bfff514-ffc7-4c30-9f0c-5a6c82a4e153 VS 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3PZ-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e11bc9d3d2ef4c7c821c2aec1be17fc9.bam 7250725775 e11bc9d3d2ef4c7c821c2aec1be17fc9 41940673-6813-4767-848b-795ee6543edf 780c38c5-f1fa-4885-a0f9-ced48cf123c9 3df6abe2-2123-4bfa-a4e4-88df5f940c04 bd39c4c4-a4dd-4b2d-9f3c-608ca8708958 JX 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2H0-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f1f8656489af03f05d5c5c08c0937988.bam 7157944382 f1f8656489af03f05d5c5c08c0937988 41f660d0-65da-4589-8372-587eb8444a80 09be50c4-0ffb-4335-a35d-d39c5b0177ea c83c52f4-3815-4f49-8218-cf80aaa62e2f a5b67481-6783-44c1-a4a3-f29fc98b92c8 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X8-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 50484b4f784af19ebde553831555f7c4.bam 6867814910 50484b4f784af19ebde553831555f7c4 421d309d-957e-4887-8a35-8156a178b33d 51494d18-70f5-4ed8-bc72-0ba543ee4b44 57902b91-be42-441d-8807-a5ea9c21b214 43a084ee-96d3-4ca7-ae8d-127926493894 C5 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BJ-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BJ-10A-01D-A13W-08.2.bam 18458860696 9a0b070d6f791d9ec14cdc537a2d7be4 42615ad6-babd-4aad-a154-14d2316e57af 029ff7f2-694b-410e-a81d-f5a32151b495 7941d1c7-5319-4e8d-a15f-60b61cb68a9b 7b080a45-a698-4873-b41b-29f4e6e9d5a1 C5 SRS203032 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-LP-A4AX-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dbf7b346886da4ba5f34671eadb0f577.bam 6552397014 dbf7b346886da4ba5f34671eadb0f577 43bf4054-9cfd-453d-9949-aee77f7625ff c4d565a5-8321-4cf0-899d-cb5beb75f2b9 3223fec6-1d35-419a-8ee9-7c5885b8be1e aa734cf9-0c3c-4ce2-9c1e-3e3f9866c6d1 LP 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LB-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d6dc49434dd5870d9bef02b9cab743de.bam 5449075390 d6dc49434dd5870d9bef02b9cab743de 4427e193-75be-4086-ae0e-dfd1c85a12f1 8a67f3a7-427a-418d-b0bc-a6cdef6a5369 e7c7783c-1d0f-4f42-a4cf-518825e91d91 a753b6cc-2ffc-4480-a6c8-178780ae8be5 IR 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UY-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 449eed7027bce3323715e920e5d3ab85.bam 7323796734 449eed7027bce3323715e920e5d3ab85 44532d4c-7e37-4d7f-862b-91b6c99321c6 1121aca4-c49d-4646-a1f1-f57998599b2b a1b99260-8643-4cef-95a0-3853d64762b7 1153361b-c1a5-4ecb-a406-2fbe16680a81 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BL-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BL-10A-01D-A13W-08.2.bam 17538644505 0dc8ae6bc99e0e61acd1fe08f1a035cc 445b855e-bb89-4a14-8a36-ea560e432efe cb1606df-1249-4b8c-b3a8-2459fc404891 03c3fe57-ae85-4e45-9657-c3182ab5e124 58cc3290-b576-42ab-bade-fe213bcb14b2 C5 SRS203050 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9U6-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e32e632d5c96f9ee8af5863ea01d07ee.bam 6852476514 e32e632d5c96f9ee8af5863ea01d07ee 446bbff7-344a-45b1-96f3-6b1cc2653cd1 21698cb2-702a-4b0d-adc0-0bfe1fe697b7 98784bbe-e286-48df-838d-1a88040658bf 0172500b-599b-4f8b-9fc7-28750f5f97e2 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA43-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1f8d0f8570959fdd9f2ec329021305a2.bam 6724177812 1f8d0f8570959fdd9f2ec329021305a2 44806105-3227-4aeb-a9d7-1b0621a7db59 7889ff80-8727-4c62-b4b3-9c613eea8fbd ed74703a-6838-4f4e-9524-d6fb7b208687 f8b4a1c7-58aa-4259-b42d-fa7bcce0e463 MA 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V0-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 87ec4d0e3932a197da5f752a55658cef.bam 7182518154 87ec4d0e3932a197da5f752a55658cef 4552b6ea-399f-4838-8931-ab71f2656e50 b59829f7-b232-478f-8c50-7100d65bb828 a5885835-9473-455a-bac0-6fa43fa8a866 efe38c7c-556c-4a15-ba78-0505e35872f0 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A3LQ-01A-21D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b720be98b40721dbe6aa7e0e4d17cf36.bam 7795552913 b720be98b40721dbe6aa7e0e4d17cf36 465058a8-3293-4919-a0b4-699eff0a1ef2 e2b50946-df37-45fb-b26c-236b264da1fc 63bffdb1-bc08-4175-8be7-d7a056d19816 0959274f-e74e-4288-8229-4fb1a2bfc185 DS 2013-08-19 2013-08-19 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U5-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7bae8f15f3484752c64b955e7ca0b7f2.bam 8864580762 7bae8f15f3484752c64b955e7ca0b7f2 465f113e-8123-4554-bb4c-8ca73e759165 df2ec865-25f9-47e2-b56f-97e059071d31 939abca1-8bd0-4271-9a9b-666764eeb3b6 c9bb284b-49c5-47b4-8db4-fb542033fa2b VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RC-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9889e61fd24d1751f183dadea8e6d929.bam 5985970635 9889e61fd24d1751f183dadea8e6d929 46a613f6-3d19-43a1-8c8b-74c32259a23e 97f1a69b-1d71-423b-8bc9-a9722681d315 ac0ae100-8072-47cc-81d9-8b52b1bf9236 7515ed16-1cf5-4cf0-bc49-7f1885346eda EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GN-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ce23ab6e1031e220e267512426072332.bam 5227448421 ce23ab6e1031e220e267512426072332 46fe6e0c-9649-46eb-899b-530da4254a8f d8016a3d-d2e9-45ba-ac10-9587913f76ef f727fcb9-e457-4643-9468-f739133b7e9c eb5034e2-d4a7-48e0-9524-31ddd63c9d94 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EK-01A-12D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b962f9b999eff061b9e6d960bcd80d40.bam 4496061854 b962f9b999eff061b9e6d960bcd80d40 48daeba0-6c9d-4077-876c-fdd7bb324e89 77e9dfce-51db-4c59-8562-7e52b86671a9 d9c2ca21-f1a6-4cf4-be28-6c2492dd38e5 f6eb459e-98b3-437a-963f-cdb4a6bb2528 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U7-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e21f542d2a043173bac675ef61d5e37a.bam 9130506059 e21f542d2a043173bac675ef61d5e37a 491473ad-7356-405e-9473-ddf478fcf5cc 3fa20904-a516-40f7-afea-48295fcb1c7b 6d01421e-d533-4967-8422-97fbc0fb0895 600f26cf-89cf-4e1c-a89a-9d2cd5b694cb VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BN-01B-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BN-01B-11D-A14W-08.3.bam 9280117966 825242e93dcdf27d4fc4cd667c28fa50 498a9915-0cb8-4c32-8f1a-4f35d6277b7b a75ef01b-8448-4722-a6ae-de766b76c1d8 8a4da4f0-30f2-497e-8a7c-988fd6b813cb dd05713e-6d6d-4876-89df-69a905d24500 C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EX-A3L1-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 511b37bcb1e1cf5668c1e85b0a0fba96.bam 6331314389 511b37bcb1e1cf5668c1e85b0a0fba96 49cf4130-7c28-40da-9aac-5ecd3d63b1ca f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4 f5d90810-8c4b-4ced-9360-383e42cb54b3 89ad6395-973b-4011-bfbd-6759209406be EX 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VJ-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 02cf20d6b0d6308531b4232bf9a33fbf.bam 5224956092 02cf20d6b0d6308531b4232bf9a33fbf 4c26c02c-80c7-47dc-baba-c59f7bfa6f8a 19f2afb8-2dd8-4f73-bd4d-571cf4a16341 f0bb0d18-1190-463d-a0ba-839c2c776794 ac802945-3208-4d9b-b92a-6e16c64a06c9 JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MF-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MF-01A-11D-A13W-08.2.bam 16112562701 219aef923083a6586d91a51b02020f85 4c3b720e-f529-43cf-a97b-ff6c77e33233 e41f57b5-3eb4-457e-82f6-714267f4f393 4f514ed4-3be6-44bc-a531-210027846459 6a7206dd-eb30-4f05-b944-2e5529607d21 C5 SRS203116 2011-06-21 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A959-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 18c71ce4c3c5ee3ce6c92cdbbe1d2be3.bam 7081715672 18c71ce4c3c5ee3ce6c92cdbbe1d2be3 4c4d44f8-1a4b-4ebc-9630-c03c7b5dfe4e acc50863-ce77-4fdc-a75c-96559ff54281 f2bea37e-0d19-49e1-91a0-a4de4dfa2d35 60db8167-4ad6-47df-a9f4-d145195a10bd VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UZ-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 94672d84a200c78898dfe5221e0339c0.bam 6345392397 94672d84a200c78898dfe5221e0339c0 4ccc398a-4b38-481a-8d8d-e918a472a511 a132990d-a6fd-4bd8-9e69-aa2a990a34e3 6817bb3e-1f8a-457c-9ab0-31ccda8b6868 23154bb9-f757-434b-9c4c-43d03e2bf425 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V1-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4a457a9fb33c32b8414a86164b84bb5b.bam 11122150069 4a457a9fb33c32b8414a86164b84bb5b 4d5c0c9e-4cc5-4097-9308-346e916e160d 2d07b99d-fd31-4510-87f0-e5e954935b82 a6a07bc7-ab1b-429d-81ed-d7a890c88e51 457c7d04-b8ca-4478-9a41-d086261150aa VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EL-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1642ab824921436d7b1ab802490eecd0.bam 5035570575 1642ab824921436d7b1ab802490eecd0 4d6e3318-74d7-4a3f-8669-fe1442c64779 798ce125-3a67-4db9-88dd-3871e823f593 e0a5d99b-b58b-4301-b2dc-a767d90059b1 9e2b9edd-5fed-4283-a46f-a8185a911e94 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2IP-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build beb15f2afb7e3bb0bf5f36da0f8dff09.bam 7193334552 beb15f2afb7e3bb0bf5f36da0f8dff09 4e007859-bcb2-4df1-a3b3-4b767ec88997 25bb00b5-7c3d-4d0d-9acf-48af557a8094 76b54726-d348-4a1b-ae26-5b08d2effc9d b7a8b87e-4963-4e23-afaa-d2e391386bf0 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MK-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MK-01A-11D-A14W-08.3.bam 10305505131 e463383a9f44dd2614c91d01d13016a6 4e0bb37d-c331-45bd-8c6e-2422d13e9177 d5df1dc1-b3b4-4856-a952-2940fd7dbf00 b726f18b-b996-4978-9f27-b3a540e06270 4b90c14d-cafd-4b28-8494-85c2f5d8e80c C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9UC-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build aa148c21fb79b49a448aa23d2a57ef68.bam 13391027713 aa148c21fb79b49a448aa23d2a57ef68 4e1fcd39-5cb5-4349-a154-da805240c95f 40fed6d8-e5b2-42c6-a558-6dafe2baebd1 cca23650-1b06-4977-91e8-f35e73e70c48 a771eae0-b985-413e-a509-83c9593537b2 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HL-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build acb04fe701d68b14d4b7cf4da6fd707e.bam 11374077352 acb04fe701d68b14d4b7cf4da6fd707e 4e9b1948-b957-4ef8-90ca-6613fe5bc702 32898a90-051e-471e-9c2c-22f8ec5ef4dd 09329a53-d58d-4480-95d8-32043e40de6e 2a3cc87b-b120-49ec-93e6-8bddbae5c97c C5 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OD-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OD-01A-11D-A14W-08.4.bam 20301734842 f1a3557b85cf8bccfe863cf8fdf4fa16 4e9a26bf-f1dc-4206-a03c-57d3949f6886 4d31c166-720c-4ac4-ad15-5ff99668bbb9 ec609ebe-2db9-4b95-a154-512fdfa9038f cc4ca8cd-1292-4e11-9b9a-2b5e1c7ba245 DS 2012-06-05 2012-06-05 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AB0I-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f47b5cb8ebfa20dd6e69fa6261638798.bam 5857955324 f47b5cb8ebfa20dd6e69fa6261638798 4f4643ae-b82a-40ce-bd59-681d3d954f29 faca8e4f-3040-4f65-825b-a35ed25fb4e1 a4f13656-a941-498a-9ac9-f020ed559b35 0ae1ac31-e3a2-4d05-adcc-1e6ca13253ba ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QQ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9deafb99f73f9901911d9d255e3af856.bam 5392158122 9deafb99f73f9901911d9d255e3af856 4fc39d22-25f1-4890-a8f7-d32c8646a0a3 8ce3b878-d75c-41e1-9029-9b144bda3faa b12deb95-6aa1-49cb-a3c5-a711d42d6fb9 a29fddb5-b032-43eb-a56c-a736f25596cc ZJ 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WH-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 20e3861bb8e818b0ffe40d52fb049ea2.bam 4371378855 20e3861bb8e818b0ffe40d52fb049ea2 5085dabb-a7a6-4b39-9676-91e0c6fac4dc 3593a6b0-2918-42ea-a3aa-1855ded8c03b dadcf6d5-03eb-4090-bcc3-b9e9dc3c7e08 704a32eb-a4bf-4e79-8097-b3717c0c64a9 DS 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M9-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M9-10A-01D-A13W-08.2.bam 17372625771 bc2eaa57095d4c2efb849b55e76e2d38 50dc8870-072c-4096-be58-8d0cbaa1d8c8 f3d88d4e-4ef1-496b-bc30-4566c3d4de72 a3be445a-a592-4073-815b-47ae41f9c4a0 ae9477f6-7175-41ad-9090-4e61419d9b91 C5 SRS203104 2011-06-21 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EX-A8YF-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 72aa17bc6c02fbbd9e56a7258a0b6541.bam 6584646253 72aa17bc6c02fbbd9e56a7258a0b6541 50e8d76a-99c8-4a5d-85dc-195ca631e9cd 53f496e2-b2d3-438d-a438-c52d6e46ff2f 1dfb4565-81e1-4a1b-bb59-9b5629d6c447 16a684f9-98e8-4bde-a1b0-22a457edab0e EX 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BM-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BM-01A-11D-A13W-08.2.bam 16807723724 b7261a658c458636499209b855cbceef 511e8a00-9c62-4646-8859-38f036c8eaa2 021319d5-4f58-440f-a74b-e3a0159d35ec 7fb8e7be-4118-41f8-b785-5cbb0afdb8b7 57bc4710-6ac5-4279-b233-b65f42999a84 C5 SRS203053 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A7UI-10B-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4077c09ece8e51155fe72c578631b844.bam 6534485626 4077c09ece8e51155fe72c578631b844 52709fd3-0224-4659-b284-373fe4a89e5b 4ca4ef6e-ec77-4a6b-b909-56cbd4f83f57 ce5765fb-5221-4cbf-aa76-bb863803df57 60420a95-e90b-4441-9e9c-0f3f7df129bd C5 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EL-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build aee822f7fba859e2e3f6b8efafee1474.bam 5411083100 aee822f7fba859e2e3f6b8efafee1474 5363d291-10dd-4992-8890-a56d15a0a2f3 9bd662b9-e3a2-4600-8ef6-9a9f9fb7cd96 e0a5d99b-b58b-4301-b2dc-a767d90059b1 5eac7ca4-6e2e-4422-bca7-35d5a134edb5 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EC-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7ec1a3038b3843900b242ae63ffb5823.bam 6282395864 7ec1a3038b3843900b242ae63ffb5823 54301355-368b-4678-8958-88e1b407553f 6b9a4cc4-c650-4576-a0f7-2dc8e20465c7 afb5442e-0249-475b-8f82-cae4e0268ad1 664a6344-8cb7-4bc8-a0ca-cb6a8e6df6b6 VS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UA-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 635c9b9c634e616c417bc95bd6e14c52.bam 7638943612 635c9b9c634e616c417bc95bd6e14c52 54794104-7a66-472c-8b2c-bac2fa857864 d91aac7e-332e-4655-a73a-b2e86d61869e 60117b70-36c0-41bb-a9fc-85db8fa10102 6e70b0d4-79b9-4567-9c51-201672dc31ab VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EJ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4ea89936ca0c4c3bc6c9322ad1d3f27c.bam 5761988010 4ea89936ca0c4c3bc6c9322ad1d3f27c 5501f8b0-089e-442c-9f2c-71987efb8ca8 79f58aa1-1b09-4dd9-8775-8247af9bcb19 2e08a89e-4035-4782-b54f-f98eef5db80d 1bcb65d3-f991-427d-a72f-702b398aeaff VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A5U3-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bf62acc84b8cef9bbcb634d1d967acfb.bam 4851402390 bf62acc84b8cef9bbcb634d1d967acfb 55e1605f-dccf-472a-9300-8a298bffffdd 9fa979c3-9393-464e-a0b4-56b84ddfca32 1399d31d-9d5e-441a-b400-8b8a92a6ff8b 7f1b3a4e-c07f-4d59-8122-922b1d49046c LP 2013-09-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A8JM-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1a9afce7ce5570d9537b40f8c7363967.bam 8962319259 1a9afce7ce5570d9537b40f8c7363967 56688d43-5e9e-4150-8800-acf04a6ecbc0 972aa92c-48f9-4406-b205-8c896373c1cb 1d730565-ffa9-4cc7-a713-c4b5b7bbb29f 916c873b-3eca-4ef1-b211-5c953dedcaab MU 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A449-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d3a09a4dd651053171490c9bb7c81697.bam 6826009406 d3a09a4dd651053171490c9bb7c81697 56c9e975-728e-4198-b6e9-e837865c43da f953aee9-2d96-4247-a737-20f021934cf3 eb0eb159-732e-43ff-a402-7f2d9f67daa8 6e2d25bd-add2-416a-8174-1da8849f39d2 EX 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CO-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7a114a64668803758f5c7ea0f58e981f.bam 6134017310 7a114a64668803758f5c7ea0f58e981f 57039b85-0b5f-41aa-9adc-d750ecbad9f7 4da77a40-feeb-4eb9-8eb0-ac7e102e3814 ff3808e4-eece-4046-819b-fe1019317f8e a398e3a5-cc4a-479c-8393-54a0f74a3395 C5 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AB0H-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ff333b0f3f458f3453dd5a05f56777e5.bam 13447744593 ff333b0f3f458f3453dd5a05f56777e5 57ca3a19-8b20-463e-89ed-8055c44d44f0 9ce5e5f7-17bf-4a70-939d-7cde2730fb85 f0daf315-8909-4cda-886d-a2770b08db94 33ecb03b-be5d-4735-bf25-045c79ae3462 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UQ-01A-21D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 37df2617e853ab26c5ffcb5e6b184a13.bam 5878585710 37df2617e853ab26c5ffcb5e6b184a13 58469867-fa51-4836-b94b-ee9acbdf2fbf 6c5c2186-8209-47d0-a9b0-8b09d975ce48 2c600a58-98ed-4572-9b6f-edba2719790c 4b9dfe4e-b74c-4eb8-82a6-1cf044bafa1f VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PF-11A-31D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d2bddc685b6816e01206f01da2e7670e.bam 6099442046 d2bddc685b6816e01206f01da2e7670e 58765817-5a58-43ae-a276-67995dbb8643 a1610997-c7f9-4d07-af1c-a7fb6e6bcc5b 1451821e-dd49-41fa-a52e-32f8524ffe82 1ab44824-1c89-4362-b3e1-6e9725a23dcb UC 2014-04-21 2014-04-21 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VL-01A-21D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VL-01A-21D-A10S-08.5.bam 12900718811 f2fe5a1d9460819b1d2b18a9df2265de 58b2d924-a81c-4353-be12-8590bcbfbab3 80482bf1-3ae3-4e8f-ba04-21192caf30d5 dfd30f94-19e3-4838-95df-14a3763419af cdf4ab19-f243-4efc-a5dc-8253cbe48845 DS SRS206894 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A2LX-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f0e926c6babf60f73aaa986b525e7402.bam 7043709459 f0e926c6babf60f73aaa986b525e7402 598ac1e8-74cc-4a87-bfb9-ffe758745799 a1c64056-82a4-41ae-bb30-0aa3e47d9040 b82f4c6d-530f-4b0e-8f33-995633cb254a 41bebea3-11c2-4748-8e60-082cfb8e0251 C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA41-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 47dcb3418252fb3c645283db59787599.bam 7103581300 47dcb3418252fb3c645283db59787599 59e65f08-992e-416c-9e04-bda13b86e478 9c8035e8-ec3f-4980-a8e4-1c40aecc1587 81658ce6-d4a9-4ee0-ae8f-cf2fa8485701 5efbe4e8-9908-4ca2-b4ef-22d7a4213f19 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HG-A2PA-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 42f069766b5d12f6247876ed415fb98f.bam 5420372914 42f069766b5d12f6247876ed415fb98f 5a657cee-8f42-4887-ad29-7f28b11a6ae8 8c0459ab-a4c1-470b-9548-f3ee12a7d7aa e2ff7cfd-a101-45b9-895f-26f403e7bdfb 235dbd13-5052-4e19-9c1c-a72a1a9a79ce HG 2013-08-16 2013-08-16 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PK-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9a4af322fd88e558de2f60d170aae78a.bam 6616225286 9a4af322fd88e558de2f60d170aae78a 5a7b5039-dc21-4961-be7e-baf8de61defe 607f3f40-63e5-4182-b77b-2a2b11991004 0809ba8b-4ab6-4f43-934c-c1ccbc014a7e 8ac65e67-e498-4771-b362-a76c57bb5895 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1ME-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1ME-01A-11D-A13W-08.5.bam 10525156560 0c486764d584abd333778f240a035160 5a789c7e-e3a2-40bd-ac32-b2bbecb57b47 d61d65c7-571b-4df4-b260-91ce59d6c29c a0598331-79e1-418d-b50c-fd945b843506 663ef1fc-5ac6-4f4d-97f6-485cc0086d7f C5 SRS203107 2013-12-23 2013-12-23 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A905-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ca43495bb727a670f59e69be3092a099.bam 6454240805 ca43495bb727a670f59e69be3092a099 5aebc9e3-a73d-4e58-b996-250cb40b20a4 a6723266-843b-49aa-8b6e-90038ffc4544 c99f476b-e8b1-4cdd-9164-0da450064886 b7d145d4-5cda-4455-903d-b0c216726ff6 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U5-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 624abc2d9d07feb213600db0ee2dae24.bam 8022410823 624abc2d9d07feb213600db0ee2dae24 5b36eb44-a5cb-4c03-8d23-f21795087b5a 2b2e0f5c-6d86-47b6-b049-833e2693b19f 939abca1-8bd0-4271-9a9b-666764eeb3b6 cab5da46-f163-42eb-8ba8-43ed69e8e518 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A3LQ-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7d888bdc09bdefdd22f2354702da0554.bam 6730211790 7d888bdc09bdefdd22f2354702da0554 5b9b223f-1c25-4962-818c-8cc185b6dedd be684ac0-dfad-48b1-a133-e2e5873099b4 63bffdb1-bc08-4175-8be7-d7a056d19816 44f7a662-8b47-4d2e-9f8f-6ceea06b54fe DS 2013-08-19 2013-08-19 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QH-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b40970533c609c046b9add42ea7de1c0.bam 5402532253 b40970533c609c046b9add42ea7de1c0 5bb7f67c-39db-4b38-a691-682e311f5305 d937e490-dbaf-4d08-847f-747c44affde2 c4f61715-ee58-4799-a5f4-0f5e27c4093d 400eedf2-5115-4771-b7f4-e82ace6d31be VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VN-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VN-10A-01D-A10S-08.4.bam 16909217937 8f91f72667d0ce83453a64dd0490cf71 5c31254f-f5c2-4532-aeeb-381fcbdf82e9 9feea440-0b98-4652-98db-817e1bb3b066 f8d342f5-9b92-42e1-8b0d-0876cc26965d b60fa473-3b87-4be0-8a28-9f0ebb0c25b0 DS SRS206918 2011-06-08 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A7X3-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0371117322ecd04c8dec018775d994d4.bam 6614980325 0371117322ecd04c8dec018775d994d4 5d9feae7-605b-499b-8872-88fc39f157e1 fb738c13-efff-4d60-a1a6-fe124e35b680 4ed1616e-8c62-4104-bcbe-26d7059f04d0 8f76d057-71dc-4ae8-beb6-fb3fc6881258 C5 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXD-01A-21D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 408b9acdb3d5bc266d1e1baa510a64cd.bam 4561338115 408b9acdb3d5bc266d1e1baa510a64cd 5e2a064f-3b55-453e-970a-018b94bd411b 7ce6c17d-3e15-4d79-af76-9c486d79a7e4 af33df2e-9737-4f63-952c-858a70aa589c 5f1cad28-473f-414c-b72c-c93707300e57 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RB-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7bb707e4e7fca1165ae94cc31b323cf8.bam 7332246281 7bb707e4e7fca1165ae94cc31b323cf8 5e806371-3c2d-4824-a54e-f3d99a9e00ed 678d2d3e-04d3-499b-bc79-158fc6c1ff7c f92a994d-b080-42c9-966f-34c1000865e3 f062bd00-cb9c-4648-a917-7c7ca0aa17a5 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A0TN-10B-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A0TN-10B-01D-A14W-08.3.bam 10221155456 a9bc73739ddcb7e6fbb69c789dd1e3cd 5ebbcb58-658d-441b-bd7c-36c2f746d173 7a14d340-4758-457c-8fb0-6239640621b8 14c65927-b9dd-4ef6-9917-db7bc431ff2f cea46e75-27f2-4349-a4a2-9460cc7eb4d7 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-HM-A6W2-01A-21D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9318d72628b065be528a05763ddd672c.bam 6057993815 9318d72628b065be528a05763ddd672c 5f807798-63d1-40e8-bfb1-46574de29125 77da5f5d-4036-48c1-8992-651b8c0ed331 929505f7-0270-475e-a9d6-00bf38dc78ba f403db48-de4c-4b7e-a786-0b7ce0116f80 HM 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5O9-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3242b56ccde29c9ebb61fa2f32f894cf.bam 5269354254 3242b56ccde29c9ebb61fa2f32f894cf 5fd3cd36-3f05-4a34-aa80-bfd6d1a8ae79 ad11f7bb-98ef-4d53-8c5b-703bc234efbe 1636242c-12da-412e-a362-914a20add708 614a31d0-9262-48d6-af28-57e81e50eb32 EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XH-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 934fabb464c22c66f6894f9691dfc4cd.bam 5315472944 934fabb464c22c66f6894f9691dfc4cd 60277602-a6b4-46fc-bdea-c713c7194a17 603d1642-1351-4f3f-8148-ab0402ed6634 183e8d87-3476-46bc-a989-ed4b09809227 dd752dce-0439-4c6d-a343-f0cccf46bbe1 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V0-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4e5e7fff018118e1fa05431a020ad4e3.bam 7047299759 4e5e7fff018118e1fa05431a020ad4e3 606dccde-0b0c-4da2-89ca-cf486dc81f41 97b62207-235d-43be-b417-1e51785c1287 a5885835-9473-455a-bac0-6fa43fa8a866 07a9ae9e-fce3-4975-8726-a3b5e9c2ff71 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KK-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dab289b607224ea86988f85cd5322783.bam 8183677727 dab289b607224ea86988f85cd5322783 60741dd8-aff0-41af-8369-7ea238d64670 f42b0b3e-1c17-467f-8083-e09417c6c424 8dbcb17d-0396-4faa-9b32-8e2566424bff 41a61f23-70c1-47ca-8260-96def13998dd DG 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAX8-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 76e8bc4961b1f2d27b01308c5d7680d3.bam 7600898141 76e8bc4961b1f2d27b01308c5d7680d3 6122096d-26e6-4274-b839-c0b353c6cbb9 2b7b8768-238c-4403-a8b0-682fcfc651d1 b5f0e361-d67d-4fa9-9916-43623dafb10f a6024a4a-245d-4d7e-9fee-96dcb3fea807 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OB-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OB-10A-01D-A14W-08.4.bam 9926658304 e7a6a3661524b8f9bd7ab28b9d654da3 61625c34-2330-49f3-b994-0fdd7e816229 dc746c1c-de30-4019-9ac4-30d7af31cf07 29a48c93-bade-4346-a901-de35a6537337 2bb7d753-ea41-4f5c-a71d-bbb4ad9cfee5 DS 2012-06-05 2012-06-05 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A2QG-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 24a3a3d6b57c70bd23590c3ffde8bfee.bam 7090821896 24a3a3d6b57c70bd23590c3ffde8bfee 622d995a-b18a-4b1f-a67b-9bb92f6228dc e99dca04-ac4c-47f2-8375-e5b63f1e11b4 d5d8a818-d689-4c6f-96b0-13f2cb10c3ca 5eb7ed10-4b04-4405-8bd6-4d51164b08ba FU 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RL-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 013ee840e6ca60d7485b6503b3897904.bam 5806068300 013ee840e6ca60d7485b6503b3897904 6262af3a-1e89-4d0a-94c9-6c8936bf27af 6ef4b38a-ded9-4d85-bdf4-bdfa495e235a 61eb08d0-ea01-45e7-884b-ac3d6070172a d4a4cabd-fa00-4dbf-a25b-b3635fc0ad9a EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HG-A2PA-10B-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 665ee14d2c93534536cdeae6bc56e4b9.bam 7997903701 665ee14d2c93534536cdeae6bc56e4b9 626cb47a-0cb2-49a8-bfd5-ae5365e0b39c c8202693-7be4-42e2-92cc-0cb1899696e4 e2ff7cfd-a101-45b9-895f-26f403e7bdfb 6bf28f80-8eb4-48e6-b63c-6fd68f41f42f HG 2013-08-16 2013-08-16 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OC-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OC-10A-01D-A14W-08.4.bam 10421723837 ddb0393c16f1a027c21442228d37ce72 62c1a582-72c3-4567-b4e1-2611e0cc1503 72615905-823e-4ace-976e-82a198791120 e711b88e-fa0e-4781-8549-7a53ed3a13a1 9f3d6908-b1c1-4b0c-94c8-6ff459d689cc DS 2012-06-05 2012-06-05 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A439-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ab95954c786d50b2aecbabd47af94172.bam 6383368881 ab95954c786d50b2aecbabd47af94172 63078f3a-9cdc-48a9-bf21-9d7382d80a52 46278bf9-39e9-4f56-9f38-eb1d0fec4168 3edb62c1-25ad-4deb-a005-e881a887d06a c45d416f-8f6c-4845-9030-4019c4120bc8 EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BE-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 93ef4757c01d2343abe345b9b13fc908.bam 7089116299 93ef4757c01d2343abe345b9b13fc908 631a907d-cb36-4d98-a862-bd042d9b8f3c 927cdf95-d9ff-430f-9e97-a6eb590774bc f8ab17ec-c365-41a6-a4bc-36653e84bce5 751aff47-42c7-4695-8d49-c8a97be7a16b MY 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A852-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c8622ce05d8ace4b4bb01922cffeebd5.bam 5662862745 c8622ce05d8ace4b4bb01922cffeebd5 6331d44c-e0f5-474b-964e-822bd437f9ec d99b5656-9672-42a8-8902-6ee10c559373 7cc8f5bd-d2d3-44e9-aff6-fe9c9c805938 b3bb3d33-1e7f-4892-a3db-a291108593ce JW 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PD-11A-12D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e91dc3ff12b0745f59d367932802fdcc.bam 6294554928 e91dc3ff12b0745f59d367932802fdcc 634310f0-dfaa-4544-9a99-946330000e32 2825b631-715e-4dc3-a092-3b9f915e9e0c 0f18ef74-019b-478d-aecd-60cc715bfdb7 352fb7f2-0ae2-48ac-bea2-356f5452243a UC 2014-04-21 2014-04-21 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EG-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 670590d93803f9d41ef58121138c1ecf.bam 7578718284 670590d93803f9d41ef58121138c1ecf 635189b6-0215-4d38-9991-990f2478b129 1e8e2964-58d9-4928-ae88-f6269d4cea75 b0b293c1-bd7e-4ba8-9f44-47398488ef2c 9bcaf270-a900-4e58-ac21-73fee4ce2317 VS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AV-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 40eb46a5a4f7433067604f7fc5a9ebbb.bam 5383191328 40eb46a5a4f7433067604f7fc5a9ebbb 6358e099-f8d4-46e3-9745-b5d6e85695cf 3019b763-0f7e-4424-bd69-80f6c130246c f241d6b1-2c32-4478-8f8d-8c746464f7d1 ec08f8ee-da6a-4cfa-aee9-07754224fc58 LP 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A852-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d933de8b68cd1035fb53ab116c2ca2cd.bam 7587936274 d933de8b68cd1035fb53ab116c2ca2cd 63b3e05f-b4fd-49b4-aec6-893c6683f2c5 0a1ed0b6-1b6d-4e27-b5eb-5fee4218c7dc 7cc8f5bd-d2d3-44e9-aff6-fe9c9c805938 81e45607-232f-4e30-aeb4-4d927f7ed00f JW 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3EO-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 68b921f39e88c6a51c73c4e5574b10e9.bam 5405870854 68b921f39e88c6a51c73c4e5574b10e9 64141777-8cb2-442e-9ea3-4871b27e052a c2900e30-5120-4349-8520-13bfab27dfc7 b7f2958f-256e-4c30-9c61-11e76ddb36ba 59f1684e-5631-4e1e-a1dc-91739f7c159c FU 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A43B-01A-81D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7342659578b677706b3a29a6963eb35c.bam 6429027622 7342659578b677706b3a29a6963eb35c 649a3c90-c2e9-4cd7-a3f2-1f06bb9d0492 4d669929-58fc-40ed-a627-87bb4daa1425 3265f9c1-7242-4c7d-b4ad-b6519ee94f84 82d18b6c-2fb8-4d20-8c5c-6e7528c88cb5 EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UM-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d4e9dbf2b0cc19078a3a9b36bf845d7d.bam 5920241662 d4e9dbf2b0cc19078a3a9b36bf845d7d 64a19e60-6d8f-484a-82f8-a8b069112bea 19b6b5f6-a429-4ec3-ae3a-9d63fa18abcb ee2c9743-eaa1-4f0d-8d35-e96686ac3913 3c3c8768-36f7-4611-b6b3-d6b8126f5594 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RD-01A-12D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e667d86f6e6edd00ae276de743811325.bam 4429950103 e667d86f6e6edd00ae276de743811325 64b31941-6e09-4973-814a-ee906f700522 b429a4aa-1a29-4e26-8236-7dc5f7c87b23 16363ef7-899d-4927-a74b-e7c03b3d8af1 5690a425-ba49-4bca-b5ec-461bd5660be0 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OD-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OD-10A-01D-A14W-08.4.bam 9903566394 a60d75ec4a76ec9f5a5545b093af3382 64db1e73-afd4-47cc-bb31-4da9c238a713 db7fd57e-784f-4c85-9869-211a456bc342 ec609ebe-2db9-4b95-a154-512fdfa9038f 49aab948-618a-4d11-8cd3-5ae9cc9c7130 DS 2012-06-05 2012-06-05 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXT-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 90cb812fb4ab075eb970cebd1de3a27c.bam 5812374868 90cb812fb4ab075eb970cebd1de3a27c 650abe01-4046-431f-97a9-c53ce37dc7b9 e95e9013-0985-415f-ba6e-e361014a6e99 5916af71-0262-42cf-af4b-eac830a8b419 d0bec1bc-3654-4bcc-b0fb-7fbba510ed60 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VH-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fce742dc759ceae6b206e2a5fc039e1f.bam 5493694356 fce742dc759ceae6b206e2a5fc039e1f 6526f454-f0eb-4231-9e68-b96706e6722f 0f832ad5-ec72-488b-b55b-1659b733f490 6813c53c-b256-4115-ad90-24d75328779e 05ef91d4-13b0-48ff-9758-6acc179f9e8e JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8YQ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d9e2c890a3408b461b30b5ebc4339d06.bam 4194081709 d9e2c890a3408b461b30b5ebc4339d06 656eb7b7-61a4-403d-9b9d-075fc8ab0694 632e586e-0f37-44ae-9c3a-0b7dd8334df4 de3cfb81-25c3-4137-8f24-ad8aa607c158 787995c1-79ba-4fb5-95a7-b6df8c92c7d7 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LS-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1a238a54a8ff3daeb8deaaf3e8897f2c.bam 6555045257 1a238a54a8ff3daeb8deaaf3e8897f2c 65d3092e-be9d-4501-9b48-840e6d1dbb45 64058b60-93c9-418c-823e-77e4bcde4034 185e1520-92ee-4af5-af15-fbeefb352c99 82d8e275-5d14-4cb5-9c88-2d0e3f863a27 C5 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M7-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M7-10A-01D-A13W-08.2.bam 15859117003 91c855a7fbdddc8325d07d9c00acf07c 661a83a7-1210-42f3-82f6-6615ddcbea92 e6d2e514-e792-4e8a-a34c-1cc82733576b e8e16aaf-3621-4ce8-b02a-7893dd656e4d 3273d76c-d96f-4244-a491-ab9de60f3704 C5 SRS203086 2011-06-20 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A94Z-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 776a530122b90f606c6f4da768dbfa18.bam 5508713673 776a530122b90f606c6f4da768dbfa18 673616a5-76fc-4dbf-b7ed-ac63346210c7 8e713928-397e-4b3f-b6c1-b9ee61fa6b62 69baba9f-19c2-4947-95dc-0dd3412929ba 2d8a0204-0bb7-4691-9732-dca1dc2048b8 VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A69B-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0d5894c918ea799b1b3346280d36a9e3.bam 3618083732 0d5894c918ea799b1b3346280d36a9e3 67a25f42-2245-4d67-8351-8338f4a85ec8 3ff4c312-9503-4618-ad53-f68e8241be5c fb4af6b2-4bed-4dbe-9309-29f59ed30fb2 526a955c-0312-4471-9866-b32dc3a6c4a3 JW 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UH-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d403f4842fb79683464b18379bfa09b3.bam 4922555378 d403f4842fb79683464b18379bfa09b3 67ac4ceb-6740-4515-8be5-47bd36da2b8b 7d3b5119-2267-4a8b-a4af-47af3471c597 8328925e-3324-4188-85f1-6ffbf819d9e7 e7e2ed15-f966-4177-b02b-76ae2a31fc5e C5 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OA-01A-11D-A16Y-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OA-01A-11D-A16Y-08.5.bam 21015596534 66ae50f1c3483ec1c60f7da1049bb7ee 68ab23f6-254c-4330-8aa9-91c63d445f60 e3aadb02-a271-47dd-b809-f85e52506c71 46c67dd6-8e66-411d-ad05-95daa9005eb2 a43a5600-8d5d-445c-9f52-a6d994f86ecb DS 2013-03-25 2013-03-25 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXF-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build db5ec8777e64c40a32572b47b5eb0174.bam 7049425360 db5ec8777e64c40a32572b47b5eb0174 68c7fe19-5e83-4a91-bdfd-d2f44689f566 a248ba68-3c19-4b13-95f5-ec5ac320be8c 0acd1e47-1099-469b-a6d4-e00db47f57a9 cc50cf9f-0c1b-437e-9931-b4c3f8309e12 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A1QS-01A-61D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9cb6bab021af7360ee2c1ad8a1f5e309.bam 6471637358 9cb6bab021af7360ee2c1ad8a1f5e309 68d29f33-5fa8-47ae-887e-d9692b2ff8f1 b0b813af-27fe-4fe6-843b-18f877023df1 6f9d21c0-3b88-450d-a249-3e9bafba2dfa 8389c79e-164e-4462-adcd-364db3afb463 EA 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2M1-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6467e84cfdd892e036ed1a87a2f28f43.bam 4635303110 6467e84cfdd892e036ed1a87a2f28f43 695e335f-e009-45b2-9c22-b6140e9bef2f a8afa2f2-f5c3-453c-9f5d-2ad6d3a20cc9 8911c80c-c903-48e4-af5b-ffedef9abc47 d54090ca-8f9b-4f5e-ba79-92cadb9bd6a7 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QA-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a5b63366faca762acab97313e147e992.bam 5907351223 a5b63366faca762acab97313e147e992 6990115c-4176-498f-be14-7b67764b5770 864775dc-7718-4559-88fb-e5b9517d673f 1a3d5555-7013-4f06-878a-98944f075b63 652b235d-0463-42a9-a650-011fd2568e5e VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R1-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 01408ee8add6b97e6bee1f2f7c6473eb.bam 4000926071 01408ee8add6b97e6bee1f2f7c6473eb 69d1d24d-0a55-48e5-9b77-ad3c9215520e e9ae2a3c-f934-43a6-a00b-ea04105a5926 f93ccd2d-3c77-4bd3-8cac-5203bd57735f 85e88e38-048b-4085-ae0f-328645a5182b Q1 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MN-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MN-10A-01D-A14W-08.3.bam 10565592294 66221487122850011ee8ff99f54a4736 69fe075a-0716-4e21-bdca-098b3140e5d6 b7c6b71d-1fa6-41bb-a7af-565e18048458 287ce10e-31c8-4b10-9858-6e45451dfbe4 d3edd964-c993-4e10-b3b1-06e01b3190cc C5 2012-06-12 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-MA-AA3Y-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2d3c3fadded17e86461d4d881f05abd8.bam 7810972427 2d3c3fadded17e86461d4d881f05abd8 6ae9e5ee-7fb4-477b-b40f-84d777e5eb48 72f1576b-b4a3-49d8-9153-88c52e5b6cf3 2f261704-d600-4226-90d5-d51ba416b55c 5048fceb-4c22-464d-8f66-f9b728f7e5f2 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2M2-01A-21D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ad170d2c078f01cacaa9f6a093cd9259.bam 5276326620 ad170d2c078f01cacaa9f6a093cd9259 6af3c175-ccb2-4e9e-8788-6651a2783ec8 7afa937c-7f6b-4956-949f-a31742f80ccc 77d53d4d-3b07-4c79-86fe-6ac812968f39 6a0afe74-ca6f-492b-a5a9-5fe5ee939722 C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KM-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 07128a57d05e0f4f5833432195ccb260.bam 6673663955 07128a57d05e0f4f5833432195ccb260 6aef078e-970c-44a1-ac31-bdf8d91f5f95 83a1e958-4f39-443b-a1b1-4712d0460aa0 e87fadbe-c58c-41d1-b413-8cf6ce70ce94 f7df9cc3-f41f-4042-861b-f7d7f2fe50c0 DG 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAX4-10B-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b98ca5183b3efff3fd38198f30a21514.bam 6979625486 b98ca5183b3efff3fd38198f30a21514 6b154aa9-3845-4901-9b5a-001c31059798 4203d9c7-4fd5-4b8e-b7c0-5a81f69f591c 13d72130-604c-4d79-95cc-53c2e25d91b0 f55d1776-85f6-43a5-9794-bc096e289873 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2H1-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b12ed5a0c4cf0634340d9ee13ad1b5b5.bam 7873610071 b12ed5a0c4cf0634340d9ee13ad1b5b5 6b82ac68-bcd8-442e-995b-befaa7d7deef 8e18b908-26a3-4f67-9d6d-cfc889c2ec18 690a7b2a-7dc5-4504-9372-70c8b55e81c7 14fa244b-e920-46bd-8df0-849846c88344 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EI-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a1ec4a4ed7813bcaf6c79940b3a0f0b9.bam 5444838277 a1ec4a4ed7813bcaf6c79940b3a0f0b9 6bde08aa-6358-4bb7-a60c-a2fefe7bdf56 4458fd7a-2b8d-4f88-8672-8cbaa6fa6423 7b228c3b-e604-41a1-9b76-8dd3d5a59ffe 5224e070-070b-42d1-b975-80d7f084d584 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RO-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2e1cabf2aa171e09c6176e5f7480559c.bam 6774758394 2e1cabf2aa171e09c6176e5f7480559c 6be21635-81d7-4795-b700-559e2174afc1 24177940-975d-4c45-9c43-7862c8e036bb c996cffb-8132-4973-987d-143274b6a081 31ea30da-ab0d-48af-bb1c-58f99ab033a9 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3Q8-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 91e3f223ac91c7ff7dac4e4a048c1cbe.bam 5509289310 91e3f223ac91c7ff7dac4e4a048c1cbe 6c55be14-181b-4bb6-81fa-70241a20dba0 8492e084-f9e1-4bad-9143-ab05dca4dc2d 34629eb8-0c5e-4910-8e13-bf7d6a1e337f 28954012-3732-40b0-8ea7-f48cbeef4105 JX 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R3-10B-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 21e6afafd0877c63d9a67e24e9ca8769.bam 3890352720 21e6afafd0877c63d9a67e24e9ca8769 6cd0a612-22d9-47eb-b723-f42878510825 7956e9b1-d201-4a83-8ca2-d1ac1e723685 73aa428a-4288-45f8-8a53-cec173dcc61f d5e8c9b5-3a1b-49ad-9e3c-84c4688264fd Q1 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AU-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 89a6935fe90397a8bebc50fd695f1a08.bam 5960856838 89a6935fe90397a8bebc50fd695f1a08 6dae42ad-570b-4f93-981d-abac1793a14b e6f97122-0a11-4a7e-9332-9aaf33cb0d38 e15d92a1-6925-4b58-a494-d6f665f67b83 183cd482-306b-4989-81c2-97a1ec2affe2 LP 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BD-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f1bd22a2c47b6b13f2c4a86b55e41647.bam 6015278792 f1bd22a2c47b6b13f2c4a86b55e41647 6df7c08e-c72c-40e8-bad7-ffe1bf20d9a5 20edb89b-cf05-4701-9da9-95da8e6b7038 cef2efb2-93cc-4bdf-a343-9965e7e0432c 524ae77a-ca2f-4efc-b56a-f605c141cc73 MY 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A97N-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2c104f047726df925f3c78498120769d.bam 8603982618 2c104f047726df925f3c78498120769d 6e13791a-258f-4a39-90f3-5dbeaf822d65 3dbefeef-e2de-4b14-9496-307481211119 87e701ab-acfd-45f2-a12e-323c94e5f3d5 b7ca7bff-a333-4996-bbf0-74063d1e0472 EA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXJ-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1aa0eb146fbd8f2829c69f151471c130.bam 8130478899 1aa0eb146fbd8f2829c69f151471c130 6e6bbd4b-1079-46e0-bfe2-864c5a91c80d efb889d5-ed53-4274-83c3-19dc2377c565 6b60bf8e-29a1-4c6b-9ead-aea4ddc99064 3037a277-8907-4058-81d8-a4a09f8a2b14 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3TX-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e2f63cea8d1081422440c71721801e5a.bam 6141303870 e2f63cea8d1081422440c71721801e5a 6e7ebb26-d76c-4f7d-af68-2e062ce68b74 d7b951ed-7d8e-4c35-b458-d119cc5e3fd7 b75644c2-b515-41ce-9b03-842ef5208a17 d9146847-1e6a-4963-9bc2-c2041b36a84c FU 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KL-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1c856226c74b31ef9fd30e3c2c3c6f75.bam 7284413239 1c856226c74b31ef9fd30e3c2c3c6f75 6f4658ea-726c-46c8-b350-82ef94d153aa d4f854a5-4255-4c57-b449-df4a3278418d 2da977fc-8b46-4c40-9636-b12fd36a98e4 569883d5-68c2-42f1-b6b1-25d12f99cb65 DG 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73S-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c3a175cbeb6069575b4bc8680426a18f.bam 5568244647 c3a175cbeb6069575b4bc8680426a18f 7183d0ae-151a-494e-8e6e-2e31df17f8fd aed21183-ab50-4241-a9e5-cf1f53b0553b b0f63819-fc86-4981-9d92-0115c6de3bce f2d717d6-a3ae-4595-91b2-73215abc71f9 Q1 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-WL-A834-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e59cda4e88beb5e0635fd815d1b973e2.bam 5213422214 e59cda4e88beb5e0635fd815d1b973e2 71a5091c-7b58-41a0-9c87-3122f53aec9d 25cea399-9ddb-4c2c-9fa3-b0d9895a51db 48d81b1e-cd75-4b55-a0b2-c331be2a88ae dbfbcf94-84bb-47f3-8373-96fadb932d3f WL 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PG-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 561f94fac36f7b09d9dd70290f9558ca.bam 8047074594 561f94fac36f7b09d9dd70290f9558ca 71d3b1c7-7d27-4d21-b9b7-2c91875d68d7 f0a71de6-e7f8-4670-a438-52b1f1fcf97e 5194a247-cfee-4c11-9475-cf5521a8c6e3 b36b549d-2031-47b5-ba70-a3ea88fd5c39 EK 2012-12-04 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PI-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 20efd5a82fa9bb931ef431c1fd6aa4d4.bam 6157910190 20efd5a82fa9bb931ef431c1fd6aa4d4 721a9046-8fa8-4fda-a027-766d4832b597 259fea6c-0386-431c-8735-27ba978a28ee bfd82578-8b60-4c23-85a1-fc14a1cf5f12 e42a980a-8189-41ad-b5ff-10181229f8b2 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EJ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7f0d0f8d17f1027832aab4ca3fe1153c.bam 4172448257 7f0d0f8d17f1027832aab4ca3fe1153c 7279e015-b47a-464e-a9b5-db2d54e7f651 67382383-619d-40ff-8932-fab7e8855bff 2e08a89e-4035-4782-b54f-f98eef5db80d 97bd18f4-cee8-417f-8fe2-ce55e4a761d6 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HQ-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ead15df73e612c37528694dc3cdde95f.bam 9701334205 ead15df73e612c37528694dc3cdde95f 73aceab4-92a0-46de-8294-67240d197922 86b36e7a-53f5-4f0c-8c94-3d013d4a1fa2 6bf00b63-89f8-420c-8d36-f680fb0908b1 7423d8ce-ecdc-4a4d-9757-74d543d9eb6b EA 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MQ-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MQ-10A-01D-A14W-08.3.bam 9564281419 44996aacc83cbc60fbf699be2b24a579 73b98e82-0aa5-4a32-8bba-772d35755f2f 0499fa6b-957b-4b13-8979-a30ba4dcf1c8 eb59cf69-1997-41b9-bf69-69ad7da292a1 45e629a2-edc8-427a-ad29-05d6db9b0e04 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A8YR-01A-12D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3f02733722fc08b708d447abf2aed9d9.bam 5392999874 3f02733722fc08b708d447abf2aed9d9 741f2e4b-a98b-4125-b4b0-fb5db1905692 cb8557ff-6287-44b0-8ba9-4c8cb8d85f40 be8b1c78-8cb1-4bff-b1fe-71ecdc454c94 f6f42f6c-a61e-466c-8658-fe77ccbdb3f2 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2M1-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 98fc2f7cb337eb55aa2a74d33b736b84.bam 7765604151 98fc2f7cb337eb55aa2a74d33b736b84 7443cc3b-ddfd-40e4-a61d-5db0b3ca7900 ad9903a1-1291-45ae-9f5b-48c6e41f5d2b 8911c80c-c903-48e4-af5b-ffedef9abc47 065bb06f-5bb7-4f79-b374-97a3011f22ae C5 2012-11-15 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VG-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 713fef5cffa09f6f559a61a4e7875ea7.bam 4537328365 713fef5cffa09f6f559a61a4e7875ea7 756107bd-f515-498b-94a2-96fe3c386284 7d2b2722-22bc-4ac7-aea3-0040394413c0 0bd52d75-5113-4ef1-bc75-509f59eaef2b 9a353aff-21e2-442d-9e95-b41c2c7df0e9 JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A1H6-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9512cce636d1deea468bb0b486e8841c.bam 5892756691 9512cce636d1deea468bb0b486e8841c 75be2a88-7c8c-4fd4-b3ad-c5f3a0439c99 0f91351d-4409-454f-b18b-b4cfc22ba161 1fe594d9-4240-49ee-8afd-c7d16a377181 e7210376-d4fb-4a0a-acb6-6d07183c8e09 EX 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PL-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0e76da20852762ccc974b8df9295230e.bam 6271742932 0e76da20852762ccc974b8df9295230e 768de0ae-c644-45c6-b6a7-75eba7c1e769 42d4699b-a0e7-4c81-b448-b8e02138f580 45cadcf3-ea98-4063-9255-5c18d6a5cbab 6ee33187-69a7-4328-9521-173cfcde7a1b EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OA-10A-01D-A16Y-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OA-10A-01D-A16Y-08.5.bam 8706780761 b7d956742d372b6c872cb4005787b3d3 7789f892-91e0-4f24-a5f1-165e0111e8be c507e1ee-91f4-4535-ac84-4f6c368b7448 46c67dd6-8e66-411d-ad05-95daa9005eb2 4d3c0511-cf21-43a8-9345-8dfa41111408 DS 2013-03-25 2013-03-25 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A411-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 04ef90fa74a74829427e6a294f321d13.bam 6406977808 04ef90fa74a74829427e6a294f321d13 77eac1fc-8305-4d1e-b787-cf09f4dfbb09 4612db5e-d3f3-48a6-9349-f94cbf9b8d3d 84cb84d0-7c7e-453c-8cc5-65b5af941028 a6a6864d-e479-41e1-9cb5-64c7f25cacd5 EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OC-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OC-01A-11D-A14W-08.4.bam 19685933015 325b70406caf9ace840c04da1e84325a 780ff591-5028-4714-b66b-ea49b4d424c3 ba015a7f-c612-4309-b767-177fd5802e4f e711b88e-fa0e-4781-8549-7a53ed3a13a1 3b3d08f6-0463-4647-87cb-86f64509e3cd DS 2012-06-05 2012-06-05 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A2LZ-10B-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 12fb0bc5f12c7a158c9f0cd7fb66ae4b.bam 11506882562 12fb0bc5f12c7a158c9f0cd7fb66ae4b 795163d6-c699-4235-b584-f0eeaddf445e d8f4b908-0a83-42da-95e9-434d1d71adb1 be8fa67d-c2d3-4fff-82fe-a46ba1fa8df0 337c81ca-c85e-4c54-9dd6-9f80043ce62f C5 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-4J-AA1J-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 723bd8945d64f1cb26c9e743cf5df63e.bam 7790583000 723bd8945d64f1cb26c9e743cf5df63e 795eec1f-4882-42e4-a06e-13fa7a4fed9d 3f5c3760-93fa-497b-9dd9-4e549048025e 53eac147-7eb8-4c54-a982-5e058d6749f8 bf18171e-7adc-4a36-8435-e033620e7f8d 4J 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HE-01A-21D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d02f9be36c0343cbaf2178b16b0cd5e9.bam 7919306571 d02f9be36c0343cbaf2178b16b0cd5e9 79e2c474-a2ce-4923-8d25-b2e41c7ed54c a5ef4c25-9b8c-4b52-92ac-6f0bfff93282 bc63dd2a-b8f6-4b30-a8d7-ce193bcd17f1 506d8b22-ee8d-4fb3-bb57-5ca79d6f5637 C5 2014-05-30 2014-05-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A0VR-01A-11D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A0VR-01A-11D-A10S-08.5.bam 15202824984 17f6d1a6c6b5c94d96956718bf6e0031 7a00e722-022a-4f01-a1c9-39338a378161 dc62866c-0dc0-4ef5-bc63-fee1e943a99f 39a3120c-0889-4a10-816a-e07528a35f7a 3343f9b1-7dd4-42b7-8d72-518a05d936f4 BI SRS202282 2011-06-09 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-DG-A2KH-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e39bc0a75ae472f2a4dcaeca39c9809c.bam 6156858318 e39bc0a75ae472f2a4dcaeca39c9809c 7aab3af6-c71f-43f2-95bd-769d2331f490 cb6f6e3d-2272-47da-98ad-6bfe2ee8e25e 6248f2a3-0da9-419f-ab77-c3f6f4353eb5 800667fd-7e05-4a1f-9c22-a7bcff0aa630 DG 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UQ-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 437eb86208fde722ae7bffe2b4cecc4b.bam 14061746772 437eb86208fde722ae7bffe2b4cecc4b 7aed53fc-0c27-41b5-a459-d2e40f909e32 acb4f047-6c80-4a9d-a498-67031316e08e 2c600a58-98ed-4572-9b6f-edba2719790c f8e3b30a-9755-43dd-98cc-180aebeeb984 VS 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UD-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1aca32cedb971092dc85c16c0ac531b1.bam 7465067519 1aca32cedb971092dc85c16c0ac531b1 7b2c2e65-9da6-431f-85ec-968a41a60181 5d57a17a-bb6f-4d56-9e1b-e8c2160e7188 60cfa29f-4770-4ee4-aa37-787f53155662 f73e6812-7f22-4eb3-964b-0f30619bec67 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A3JJ-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 692ca1a4361f667cda821e16fc74f630.bam 6512984954 692ca1a4361f667cda821e16fc74f630 7b5d6d8f-4406-489b-ab65-f14f0c92437d 28db5b6a-4a7b-4308-b7c8-7d43b4c4e503 f150d999-cdec-427e-b8b2-00731c648989 5b1361d7-f0e2-406f-b632-31ffbf8721af HM 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A94Z-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5fd45a4dcf1c787898e6a980ae914359.bam 7815309532 5fd45a4dcf1c787898e6a980ae914359 7b8aec4d-f48a-44e2-9119-80b3981cf27d 0dd835c0-033b-460f-98ae-adb00b0561b3 69baba9f-19c2-4947-95dc-0dd3412929ba f324a954-6590-44e9-b799-690910e82fb2 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A8YF-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e987f58e7a43eb47f9e62f6dc47d01af.bam 4428017198 e987f58e7a43eb47f9e62f6dc47d01af 7ba7145f-7d14-41f5-ad7d-1f3cf09e17ca b0876744-9b71-47be-8a39-2cd51682de19 1dfb4565-81e1-4a1b-bb59-9b5629d6c447 c13258f7-5fc4-4710-b328-baf3d9014038 EX 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RA-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ba19723fca7d076aac276ac042060956.bam 7044020964 ba19723fca7d076aac276ac042060956 7c90d268-a7d6-4cce-86c3-e2cd1732ac85 a36cc751-6ac0-464c-98a1-9e29735c1962 ada77320-fd05-4e43-be72-864391044b35 3c4fba8a-8b7a-4558-906c-463377ed8536 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CM-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 58af223cf4737372cca2914464d14d1e.bam 6076898219 58af223cf4737372cca2914464d14d1e 7ce71082-a7db-4161-9ec3-35c730b5f0d7 2f32f039-8e0a-47d1-b4c2-b5851689b030 d223ff09-b80b-4368-9d80-a59dfbe4d820 fefa6b4c-243d-4544-accc-11515bbe516e C5 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A5RQ-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8da2436d855cf9813e7ec8c5c06cba8d.bam 5851748521 8da2436d855cf9813e7ec8c5c06cba8d 7d1f5fce-22f1-4cdd-9115-f5e5fb2342cc a5d8e29b-c0c4-4ae6-aa1a-94ddb9f3d410 b16469af-a721-43e9-a4d7-c39b94d1139f f35bfa2e-f04b-47a7-9d5b-dba97c937be7 DS 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LT-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 894a9b0eea320f91803f37d3315d61ca.bam 5850444457 894a9b0eea320f91803f37d3315d61ca 7ddfae4c-93f6-4d79-ac85-5d402f2ad363 aff606ff-0c62-4adf-b137-275bf4aafa5a fb66b7f5-22ca-4d4d-97c2-30e6edfff781 947484cd-30e0-4941-8f84-ddf8eb70e3b0 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QQ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3b1a4b29166b6bc7a5b3d5b9e5a23af8.bam 5393483564 3b1a4b29166b6bc7a5b3d5b9e5a23af8 7e928dda-e631-48b6-a2e7-464146226076 b9e9d9f4-6ba3-4184-b841-9c53654b02dd b12deb95-6aa1-49cb-a3c5-a711d42d6fb9 1c968741-c5d4-42ce-890a-973df7855b33 ZJ 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UO-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f54056d0435b372d8987fd5c47ac25d1.bam 6348394064 f54056d0435b372d8987fd5c47ac25d1 7ea560e9-39c6-46ef-9190-75cac468af54 4e50c3fd-5b00-469d-9114-de32563eafa3 4da121da-9193-4ac5-8206-03cb1f7c2c14 227a83ea-a210-44af-82bc-d3df6cf7483b VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DR-A0ZL-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DR-A0ZL-10A-01D-A10S-08.4.bam 15481650886 f418e01230fda3abe76b37d2b2f7ecba 7eeea4d1-0327-43ff-b293-7fe41f33938a 3dc49f42-9237-4a15-8ff4-f6ec60a70467 36605f5f-245c-41e5-a9db-705373da7923 7ed167e6-07cb-4f06-9936-fad9f822f65e DR SRS206873 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1M7-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M7-01A-11D-A13W-08.2.bam 16004340193 f9612706c1d83b669de55afe584f3133 7fb0c839-acc7-4ffb-951f-d218fbfad236 e4e82491-b934-4b89-a62b-7bb1a0d18c43 e8e16aaf-3621-4ce8-b02a-7893dd656e4d 77c5348b-8327-4851-98c1-2f6bcd0682f9 C5 SRS203080 2011-06-20 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A3YQ-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 13c5f9e05d7d7c9e9872d3d7ace85e12.bam 6561434634 13c5f9e05d7d7c9e9872d3d7ace85e12 80696ab2-d5a3-4c93-9e9d-cc04adb6b4a7 9825f84f-7b62-480c-9b58-3f461ea578d1 6e01248b-c551-4f52-8066-cb2d26eb6394 84a97589-63ae-4151-89f3-40f5aa9de72e FU 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LC-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 024af5721edd84237323f62a810758fa.bam 4459524311 024af5721edd84237323f62a810758fa 8069210b-077c-4436-bd0d-9ba2381d7d7d c3d75701-b40d-4e8f-aa95-d71183218400 58bdcace-0047-456e-a225-68953edafe5e ca909a69-58fa-4eb0-a013-fc6eb99ed794 IR 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UA-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 870de6137d20995ecdf7fc47388237c1.bam 5950641587 870de6137d20995ecdf7fc47388237c1 80a3583d-20a3-47f0-a141-8e51cde7115e 10ce63c1-faf1-4577-ae82-91dca4354fde 60117b70-36c0-41bb-a9fc-85db8fa10102 bbf2c2f6-643a-4ed7-b27f-0a114675553b VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A4S6-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8f21588ebf640ebe0660f06c8f56fc8b.bam 5954334342 8f21588ebf640ebe0660f06c8f56fc8b 8128f7e6-7e0d-439b-b63e-947a795af1dd 542f81e6-6083-44ac-96e3-546512629746 6bcf8b41-7abc-4b6f-899a-1f67b4ada765 eb4db5b8-1f9f-479a-aa47-36cf387b2571 HM 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAX8-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b379a6ade8ed81fd741c9d13e49244d5.bam 8218887634 b379a6ade8ed81fd741c9d13e49244d5 82366fbe-5f4c-4400-8188-144ae1c2cca1 9e6d9042-b359-4f6d-b64b-fab369a1dd00 b5f0e361-d67d-4fa9-9916-43623dafb10f f6f8fbc3-cb20-4001-af37-825a73b19941 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZE-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a5197e1df4a52cbd4269b10747f80ed7.bam 4516585452 a5197e1df4a52cbd4269b10747f80ed7 83b9200b-1913-4799-b448-1b564ffc7ff5 dc1b5352-cd76-41bb-87da-e8c01a6b87a5 5e39485a-ac6b-496d-9984-2ea8075f6a9b 8542c9ce-a789-42b5-92b3-9caef8e0e69f EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CG-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1619e087772a8d39bb8c920fff5fec9a.bam 6549231150 1619e087772a8d39bb8c920fff5fec9a 842b6cbe-cb00-4046-b55e-2fb7676aa60c 32ce03c7-1db6-44ab-92af-7a76d5cbf14d f2c901d1-2039-4046-89b5-c2d45bcf10c3 1dd33bd1-8afb-4544-bd4e-cc5058dff454 C5 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXF-01A-31D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a3362dab8973dce3de0f9c1be92aa840.bam 13937370917 a3362dab8973dce3de0f9c1be92aa840 84feeeac-5faa-4d9a-aede-e2c7088cae96 5aa72552-08e7-4a18-82e3-65b99ce13d8d 0acd1e47-1099-469b-a6d4-e00db47f57a9 40ce7fb9-623d-4972-9031-e5e777e6f7d8 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UC-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build afca2361ee6227e334e3af3c21120960.bam 5461219840 afca2361ee6227e334e3af3c21120960 85868d89-8441-4ff9-931a-2cd9ee7eb61d 0a95dc33-f2e6-4723-a85e-87f716883112 5c326e9b-85e2-4673-9033-c11827467e1a 4916c5e8-dc72-4240-bda7-dfa6a6537b7e C5 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-2W-A8YY-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2308c254ed02bbab73f9478cc398e42b.bam 6691449385 2308c254ed02bbab73f9478cc398e42b 863c2619-35c6-47f8-850a-7054f8d3f711 2640c2ac-91d8-4289-b11e-816a4dd8d182 5aeac31a-176a-4f93-a376-a93a670821bb 62c9bdef-b273-47e7-896d-42bcbd9ed4a0 2W 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LY-01A-31D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8cdf8451fea140219064e854091dc3ba.bam 7183504811 8cdf8451fea140219064e854091dc3ba 884e53b4-0564-4241-bb2a-86433b4dd9c3 047f9e4d-86b5-4943-aef5-68199bf29e8c e733f289-a0ec-478c-aad9-1378ad26ddfa 298b78b6-2508-4247-a4e9-aee460786f98 C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PI-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b3cf4864641cbad52d3817e8c41c01c0.bam 7601308881 b3cf4864641cbad52d3817e8c41c01c0 89357aa0-518a-4c2c-930c-3253e7fd35bc e3848eba-3fe1-4f2e-a96f-eba982532f04 c659f1c9-f3b4-4cfe-8627-2bb716c62b96 243df871-b041-450f-88a4-bc5174a73601 UC 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZD-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5104268bec67e471523308029855cf7e.bam 5187713272 5104268bec67e471523308029855cf7e 89564ab8-ecf3-47df-8445-63d7595830a2 7fd39abc-ea1a-42b8-8cc1-90ec3de41c86 35d677b6-0487-44d3-bbba-651eac7e0635 0add880f-39e7-48ac-94ea-8e15f1ee3d3f EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXI-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 547ca3d93828f25256bd5cbad92a467b.bam 11589548226 547ca3d93828f25256bd5cbad92a467b 89c5f59e-2179-468f-9738-53374af97fc3 e57d9f64-74e8-4de0-9049-6124df975bb2 40a86987-e77f-4977-92b1-8217796e1938 0efb40f8-0996-4ae4-a2a3-9df336b31a90 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3TQ-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ad2568c1fecffa4d79cd27ecde12fecd.bam 6162664403 ad2568c1fecffa4d79cd27ecde12fecd 89d2fab4-6e84-43ae-92d0-78171db0cb25 3367b5e8-cebb-4e94-baae-17116774c04e 7218aa6f-3345-484f-a329-a3b6169a67c7 b76ed8fa-2f4e-489f-aaf7-a69cc535c888 FU 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73O-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9268bd9fedee4b64102b19fc5d534c45.bam 5782056029 9268bd9fedee4b64102b19fc5d534c45 89d7c84f-7419-42d5-adf9-8da6fc2d2073 082c8656-7fab-4610-8aba-9505f60be116 d0cbe668-5c95-4261-a1e8-cef55093a0f7 bc95ea67-748a-4826-9112-8ec1ea2167cf Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QO-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4da93329803ce72a5de740d9f36f87c6.bam 4567725802 4da93329803ce72a5de740d9f36f87c6 89fb88f1-256d-42db-970c-79601cb8f7f0 a2f93067-4e60-4b2c-95d9-86ef898884c2 eb3ba1fb-8254-4c02-a982-507f075cbac1 c65da2a9-b5b3-4e0d-9fa3-f6a17c212ce1 ZJ 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UB-01A-22D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 02c72cb8c856275727f75bd0b12bd9cd.bam 7429541461 02c72cb8c856275727f75bd0b12bd9cd 8a9bfafc-6819-4ec7-8f75-c0a51b6442ac 3862f579-6d38-405e-890a-cfb4a9ca4d4b ca242b4c-b879-4e13-a1e7-84c984067189 720645a9-7408-4cd2-a6f2-de9dd694cf3a VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DT-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 918e5eb1512d279ac604bd092639057c.bam 6847167634 918e5eb1512d279ac604bd092639057c 8ab4cc88-cfe6-4418-9f30-15db21edfb78 3b423342-bc9a-4c60-9f5e-992e4aa439fa 46adfbbe-3add-41cd-a388-b1ee0790bf62 badb7296-d012-4c93-9952-dc53f8e2bbd1 Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1ME-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1ME-10A-01D-A13W-08.2.bam 17951930967 781827eb92057b7fd3f4760985dde70f 8abc0013-1840-4897-97af-aeb416b7a91a d95c0a8b-ee27-4fc5-a963-53a9d5174c19 a0598331-79e1-418d-b50c-fd945b843506 999bf71b-3c36-4055-a38a-a5e1e86c458a C5 SRS203113 2011-06-21 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-LP-A7HU-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3d89ae126826b86ed1f60dd85bc988ff.bam 6667143390 3d89ae126826b86ed1f60dd85bc988ff 8ac6a951-8cab-4e02-91f3-90e06b577f6e a18b1abe-5e70-4077-8bb9-fbc2c13a2845 7067b7da-fb1b-4827-8fe6-9433ed672d3b c8e06edc-bf1c-4b84-91bb-582b6c2936e5 LP 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KM-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fff6bc2b436912285fccae2bae94e7d2.bam 6799659316 fff6bc2b436912285fccae2bae94e7d2 8add9288-84e1-45dd-aaf8-8fb08c93131b 4b1c779c-a2a3-46f1-bbea-845afa302761 e87fadbe-c58c-41d1-b413-8cf6ce70ce94 1b6919ff-16c7-4986-a7fc-af7900a52909 DG 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AB0H-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5fb740ac43bd49d3db04341e9c6e6cd9.bam 7846598164 5fb740ac43bd49d3db04341e9c6e6cd9 8b36c7d9-ea31-49b9-9517-459ae4967fff 5b50ec29-c80f-4446-ab20-6fb07debeaa5 f0daf315-8909-4cda-886d-a2770b08db94 e2b02b02-860b-485b-99ee-7ec70757d928 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-R2-A69V-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f900690c64475cc91dc9a2e7b070f710.bam 5253598916 f900690c64475cc91dc9a2e7b070f710 8b7dace0-4b40-4c2c-a427-5b8f61ca3a97 14e16f58-9c59-458e-bea5-426b858e81e6 0e137272-a21c-4c5e-bfd1-a774b339a753 a48d2173-fe97-4fea-8f4e-ba81b5f6a833 R2 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXU-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c519a94a9e99053e09d60769895165e9.bam 10038961777 c519a94a9e99053e09d60769895165e9 8b8c2827-21e1-4694-b08f-bd433a4ca634 23d56772-0865-448e-b58f-5a4ae95f74d1 ddd4b6d2-5be0-4edd-977a-a795eea3c738 4ea52eea-1ff8-4b69-ab97-caaadf915136 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UJ-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8580d3adcb95fd2f9e286f8f2659388a.bam 4998190844 8580d3adcb95fd2f9e286f8f2659388a 8b8e07a9-d2cf-4fc9-99a5-f0637320b811 dfd3d712-393b-486b-b0f0-432a2f5c5fac 78c62970-4b48-4dc4-9042-5f48f42818ec edb78cb9-e493-40a3-9f9c-9e1f3a88c768 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A23L-10A-01D-A16O-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-FU-A23L-10A-01D-A16O-08.2.bam 12804461036 49fe5b5e58eb87afc6bcb082e8a43948 8bac08cb-e6dc-4435-a86e-531493ca97be 6881795c-5c2f-4406-ae0a-62c58056b4f2 86731af9-2d33-4521-9cf9-5f6152ca15d7 2d98bd94-55ec-442c-87d4-96e7c0529158 FU 2012-07-14 2012-07-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-LP-A4AW-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 12a0eec1a0a953989d8d2f63fb35ac2b.bam 6503134598 12a0eec1a0a953989d8d2f63fb35ac2b 8bbd06bb-c9af-451c-9742-5c2796708905 dc7ed67b-fb7d-4b7f-b4ba-21db7bfe7a48 74e47ded-2c00-4455-aaa6-cd662dfbf05e ce324702-d597-49e4-8669-bcf2833c0f28 LP 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZF-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 33316aa3d72207fca24e7bdd0fb726e6.bam 5460053095 33316aa3d72207fca24e7bdd0fb726e6 8c14a75d-a61d-44e0-a922-a740b656020a 7ac19348-9bcf-43e6-af2b-2eef1e6c3e79 0c6bb7dc-45a6-4190-a7c9-b080d49fd58a 42c9c212-0d69-4ef3-8e63-0964f6f7b6df EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VJ-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9c19d78e7f69d4ef4ce1b35960d8ea40.bam 5791601843 9c19d78e7f69d4ef4ce1b35960d8ea40 8c14700a-6c18-405d-9514-f450fc27ab16 8f4516f0-ef3b-4f1a-881c-a1289520ada8 f0bb0d18-1190-463d-a0ba-839c2c776794 0fc6e478-1fa9-430c-96ea-b14fb2101181 JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UH-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4e904701c6e511b0abd83529c6f7e75b.bam 6174639357 4e904701c6e511b0abd83529c6f7e75b 8c32e6b2-b43d-4aa1-8b42-f72b53be3e14 ddc25472-1aa5-42dd-a201-f4751a118571 6949c03e-067a-49a5-b48d-e9380a1b0b27 ffe75deb-19ce-4bc9-8d1d-252c1917ddfc VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A901-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9b3f587852094fbc27b25eabc0312d58.bam 6402026263 9b3f587852094fbc27b25eabc0312d58 8cbe8af0-487d-4f57-a7fd-f5870f5525b0 c5484fa8-cb74-439d-b9d8-084873233164 e8f07d20-d043-4c69-8898-87d0f0fc5a9a 2d8bd645-6dce-4a03-af87-c91132a013ad C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WI-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6feed2d79fe801b2494180ad905c6c4a.bam 5315123474 6feed2d79fe801b2494180ad905c6c4a 8cee9d43-e549-44a1-985a-0ceddff8b262 e8d9f25c-40cd-4e8c-943b-5f44a8284476 c14468eb-e725-4029-96cc-75bb9ebd9def e85a47af-011a-44be-a8be-1f7a6736c903 DS 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8Q8-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f715f973136f243f932d2d494a5db714.bam 6231612192 f715f973136f243f932d2d494a5db714 8d9bde19-f0f8-46a1-b5e7-b6730d99f068 262978be-5b18-4912-892b-3b39765302dc 6c3c8219-74ab-4e54-81f5-84d4d5884252 9fc25b2b-56b2-44d9-8be2-5510c06b8d33 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VL-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4dcaffc6b6405056fc0b6c97499684d7.bam 5107870218 4dcaffc6b6405056fc0b6c97499684d7 8dc88598-947c-479b-a8a0-9479d61d2f88 12582a88-5eb4-4234-a4e9-f19442bec145 d1a5b028-ec79-456b-81a1-69838e2922df c3a67860-2254-434b-9144-36574d399025 JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LF-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 27927d7800b5124db5d3fc448e7df379.bam 6591386313 27927d7800b5124db5d3fc448e7df379 8dd03ba0-c76f-48d0-b136-c157e8a2376f 1a368b09-b49b-404a-bc41-aa49cdc7d8a7 785ddea1-399d-47d8-b2b0-39e95eaa24b5 bacc5092-b6ab-4a28-9d55-fa3ad22c3eef IR 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A94Y-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7773785f71b45e340718ba1ffe686130.bam 6417068787 7773785f71b45e340718ba1ffe686130 8e4f5b0f-4947-4089-b72f-03be59f9b71c ab0111c7-ebcf-4688-9023-c9bc81736f83 0e7f79cd-d188-42ea-bf96-4ba9e9b8606b 62f602d9-cb97-4456-a5ff-90e4104dbb22 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MH-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MH-01A-11D-A14W-08.3.bam 9086878220 4692800ed6c4812a6bd6f6c52a95f214 8f45989b-a5fe-4e03-a564-0bcd25a7d9d0 f26c7e5f-b991-454c-81c6-ceadfb6d0270 3143822c-66c4-4b58-8d29-e92d065ff049 a2c048b4-f95b-4b43-b9f1-b42bb48e5875 C5 2012-07-14 2012-07-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A94W-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a4e65d66868266fd5fa295880d0fcd0d.bam 4193522377 a4e65d66868266fd5fa295880d0fcd0d 8f62b26a-b251-4bf0-8b19-5cc6996cc1ba 2e3f4779-1603-4afd-af24-daf6f4bafcdb 2f6a0e87-1e6c-41f3-93e0-3e505fa654b0 58a2bec9-d928-45b5-9207-fe19ee9fca35 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QF-01A-21D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7d2b5b3285ec0517030840cdfe72b581.bam 4908515095 7d2b5b3285ec0517030840cdfe72b581 8fb72be9-25c8-42b7-8f1c-a1e79f05e289 05e39c70-4fcb-433e-9e16-f4cf649bcb68 21254cb0-68f3-4ecc-8d9a-73fb0e994c5b 9d1990fc-1a2e-4193-8eee-f46e93f4469b VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A1QS-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 08cdf889e615469fba6bbb5f2ae579a6.bam 7957436340 08cdf889e615469fba6bbb5f2ae579a6 8fbdb82c-66bb-415e-87be-24ad014dc8bb ef78763c-3449-4525-867e-197c045f98a6 6f9d21c0-3b88-450d-a249-3e9bafba2dfa dac3e9e0-2a56-450b-9f7d-81b57bb8607e EA 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BF-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BF-10A-01D-A13W-08.2.bam 17969371231 5075e7df0e9056bc731bbbc514ed4152 8fccddc3-ed2e-4540-87db-06a4251c201c e3adbb90-3051-438b-b7fd-7deab3f1cf03 262311a0-7a10-4934-8fba-11ee581ad738 d7002baa-1a99-441d-8d83-d146dc49b78f C5 SRS203014 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A8Q8-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a16473c401fd6107503fa136267a5132.bam 4933010186 a16473c401fd6107503fa136267a5132 901aa8d7-b230-4738-a99f-4f285431b38f e8a02ca2-4149-48c4-8da6-42bf4f3c0722 6c3c8219-74ab-4e54-81f5-84d4d5884252 3a63975b-9967-4667-bc7c-d3093315bd02 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M6-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M6-01A-11D-A13W-08.2.bam 18165081497 adcc0735b6daf90f07f6f5b52b09b147 902b01df-6ef8-4415-b547-8de634252917 21b83870-9be0-44d2-9365-da0ac1eb44e6 825a6fbb-aede-436f-800b-c7f096da0a77 013eeabf-611e-4351-b1a3-c3f172f5e081 C5 SRS203071 2011-06-20 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A57G-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 600c14e74ce6027981c5adc52eb690d2.bam 7699589019 600c14e74ce6027981c5adc52eb690d2 907eef7e-a6f0-4831-be12-dc41dd612c6d 8688044c-e6a4-45a0-9266-dde6e8873fc9 968bd652-786c-4ddb-a937-dc480cb821fc 393ee79b-6710-4c7a-b2ff-9c8fbe04fbaa FU 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KH-01A-21D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8894ceddbee870f11da6f2ebb9b53edf.bam 7854824949 8894ceddbee870f11da6f2ebb9b53edf 90ad02a7-dbd7-4f8e-8f76-b363a4755a77 f012de18-28d4-4214-a883-8b0a74c598a0 6248f2a3-0da9-419f-ab77-c3f6f4353eb5 6f0c0187-4fc7-492c-bb0d-535e0f9976c4 DG 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R7-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 63de906181be0f60b5b687ba9022cf24.bam 5936741155 63de906181be0f60b5b687ba9022cf24 9193165d-ba77-47d5-8705-557af3fb9e63 d4ff9f4c-d8b8-4842-98a8-9e36caab1e3c d7a75bf5-5189-4978-99d9-fcef91c9fbd2 6064867b-ca99-4158-9e01-a8a37a0f955c EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZF-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c6a4cfd572949365ec439342092c2fce.bam 5918965857 c6a4cfd572949365ec439342092c2fce 9220e965-9fc1-4015-8c4a-89f89c2780b4 e5eba636-4c19-4411-95f8-59b8218f57fb 0c6bb7dc-45a6-4190-a7c9-b080d49fd58a ad361505-6106-4aab-a671-5157b72b4c3f EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-PN-A8MA-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 84f6d25031d14e2f094e68d97cf03f4b.bam 6221671711 84f6d25031d14e2f094e68d97cf03f4b 929b478f-95fb-45e6-ba19-88e81bc35868 add05a30-f337-4d3f-88bd-477d3eae8312 55add854-e63f-4335-bea9-23c3eb1e766a ef45c474-ef46-4408-af46-0dbd7c71d7f4 PN 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZX-AA5X-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build aea4628a0eea329a66e893153226ec8f.bam 9113057399 aea4628a0eea329a66e893153226ec8f 92b4292a-b898-4695-a7c4-a54effb3faaf d4539dbc-3874-4649-9dc6-bd27f21581fd 4756acc0-4e96-44d4-b359-04d64dc7eb84 876ea63d-4fe3-4e7b-a066-e9d29976ab7a ZX 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-R2-A69V-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 21b543b2b39c6fe47a9daeb0ec0d4b76.bam 5452771387 21b543b2b39c6fe47a9daeb0ec0d4b76 92e68ec4-a260-4f74-8c21-6eafa9595ae0 31d332f4-54a6-44f0-bf12-0576e83c21ed 0e137272-a21c-4c5e-bfd1-a774b339a753 86d32972-f923-443b-b285-b18f6fd18fd0 R2 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UI-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d75077fbcf48c045d49beec0713d6984.bam 6573386619 d75077fbcf48c045d49beec0713d6984 932202c0-f20b-45bc-bd21-3d1a77923222 81ecabd2-99fe-403e-bb1c-8e43c1a2731f 9c516d28-bef2-4334-bdda-97950bd95ac0 59ddf846-c93a-46af-85eb-bdd57bb36aeb VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UC-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c8a5171162e0ac75e7be8312956393eb.bam 9838760863 c8a5171162e0ac75e7be8312956393eb 934b2e5b-fa8e-42d8-9c2d-86b7a05413c3 bb76b8b0-ee5f-4955-9b4c-2f8378a458f2 5c326e9b-85e2-4673-9033-c11827467e1a 531d7816-8606-4415-bca8-3b332f9de720 C5 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A40J-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7842fe2c1082f850fed7d28c2fc68434.bam 7878522236 7842fe2c1082f850fed7d28c2fc68434 93cd9d91-295e-41b7-9748-6f41ac92759d 956cb80b-81d3-4f19-9b71-cb636dc91845 63dcfa32-c69e-45ad-bea3-ae672acb11c6 79662c1c-ede3-4206-b294-6dd8cd8db438 FU 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LL-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a8c0aabb744ce9a2b374d6a633223c55.bam 5990354358 a8c0aabb744ce9a2b374d6a633223c55 93d3170f-782f-4e0d-b01a-dff1d3f34da0 fe76b2c2-feab-4c67-863e-28f103b47dd8 7c4ab1ca-4bdd-4ef7-9a42-f6c0c7136d26 c05eab24-367b-4996-bce0-6e9b24029287 IR 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3YQ-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 016a6572e79d1c84ab575c3c5b14c22f.bam 6228626203 016a6572e79d1c84ab575c3c5b14c22f 940667fd-8388-4760-bf23-eacc12f5bb2c 2e0e8f78-0cad-4515-861a-d81c76f98637 6e01248b-c551-4f52-8066-cb2d26eb6394 f4fbedeb-d14d-4189-99af-0f015cfe5ac7 FU 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8YQ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0a503198d349883516bc5d64a42ff281.bam 4459568704 0a503198d349883516bc5d64a42ff281 948aeff2-42d2-4ea9-b14b-f5c5e9a120d8 c90889f2-1f3b-480a-8051-016a1bbd360c de3cfb81-25c3-4137-8f24-ad8aa607c158 08d61f68-2182-4f72-9850-8f1abbf3c4b0 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-GH-A9DA-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f0f3e7684367b063ab13d1efb227d013.bam 6573511542 f0f3e7684367b063ab13d1efb227d013 94cf5d95-16ed-4c47-b93c-05402be713de 2dadc315-2b09-4669-bba4-a02cc3e97749 67195401-9099-4ca9-9790-f42bcb815289 78ca2e02-948b-48e4-98de-1c6e4fb3afd5 GH 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A69L-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3ecabf9dc59e01783befc5e9c4f54bfa.bam 6613404185 3ecabf9dc59e01783befc5e9c4f54bfa 955bdc78-52ac-4de4-b527-27ead9127923 8da1f60a-7dd4-4e44-b983-5d8dcd9404fd 6dca2a6f-7f2c-4524-b528-396a889b2a3f 3fbab96b-aa6d-4223-9929-1de48ddf5d5d EX 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EC-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 323e9427f78c7651d452207b7241cd5a.bam 8306035608 323e9427f78c7651d452207b7241cd5a 95fa8e88-e88d-473a-9127-04b619ba47a6 9b3f3b6d-c5df-411f-aa89-d4c7c4758715 afb5442e-0249-475b-8f82-cae4e0268ad1 1c1d6cac-62d8-4477-9469-25973f9f27ee VS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M6-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M6-10A-01D-A13W-08.2.bam 17189436706 9fa4dc4139f8f4221ca586ca6fe03757 96abde8b-6dca-4ec0-8c70-ad35a2b2a270 c697db9d-0569-4f05-a3c3-b470633c5927 825a6fbb-aede-436f-800b-c7f096da0a77 60991a31-58a8-422a-8e4a-ea01ebe43311 C5 SRS203077 2011-06-20 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-MA-AA42-01A-12D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build aac021ebb11b4a0e893c1c60a5aa39bf.bam 5003558890 aac021ebb11b4a0e893c1c60a5aa39bf 9718f365-208d-4a5c-bf1e-b53a22d61d96 f55b2938-9a14-4543-b78a-5bc61dd0a8c1 da5fcb99-16b4-4f9e-8602-d6a6192875ef 778cfc29-210b-455e-8130-85094940d628 MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RN-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86e9a3d3217eac5d09be7ac13799f37e.bam 5888457437 86e9a3d3217eac5d09be7ac13799f37e 972d422a-a2b9-4a55-831b-e0a2fab291a0 eb51413f-8868-4aac-819e-1f6b8931c4c0 b610d391-0c9d-4114-94d6-5e4aa4270122 c44b832d-9f76-4ea3-9cb8-9f51465d605a EK 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73R-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b723f04be0ee06c7b5ce190ecfaa6a00.bam 6660160511 b723f04be0ee06c7b5ce190ecfaa6a00 975a50de-437e-44bf-bb94-f89d2f2200d1 88f672e6-0cc0-477f-894e-6d3629f0fcf0 d9b0ac5a-811d-4305-bb1c-a965bd389ce4 52ffbe32-0018-4f2b-95f7-fad8c331d863 Q1 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A950-10B-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fcc3cb1f6b31dd9159622934b6c37dc0.bam 7717587345 fcc3cb1f6b31dd9159622934b6c37dc0 97572dc6-5eab-42e0-a606-7b3d98b781b3 ea5ec303-3a7d-4939-a7ee-774de3892c62 3d190f07-2f79-4ee6-9f63-0b563dc05c74 6ae0f656-07c5-454f-8c6e-8015775a7aa7 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A1H5-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-EX-A1H5-10A-01D-A13W-08.2.bam 18315451486 df15f2c0efa8c55f6ce9bceab56f89db 97ec0ea7-0413-4c8e-aad9-d8ee9715f103 0a3a2d94-7e83-40a5-af85-0f76840a3037 6b74c07a-9932-4a80-8296-9db08d0c6964 28b61277-d0ab-419c-be3f-d1e56a2c20b6 EX SRS208634 2011-06-21 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9V5-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 43f2cd21c8bf106981f52f14e7d55581.bam 8013720876 43f2cd21c8bf106981f52f14e7d55581 984253d4-45e8-499b-aae7-2a0c276616c3 ec360aff-67c5-4b66-9a29-8c6657aa2586 d3ff2aeb-46be-4f54-8a8f-178eb921fbb6 9e58ab67-62f4-4270-b7d5-3b4ed920defa VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UE-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 06769f6834f783e7b34e6a6c612d4305.bam 7044279217 06769f6834f783e7b34e6a6c612d4305 9893b306-dabe-4e7a-b946-46e63f9fd5b8 f9e9f417-3040-409e-9c2f-d8b7f71f0452 da30a845-c4d3-4c78-b8b0-210239224f8f 0b293264-bca6-42f4-96f5-317cd79ab3dc C5 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GM-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 71a06f94442d428c5924e119be90f02d.bam 6186141751 71a06f94442d428c5924e119be90f02d 9a44ae6b-4220-471f-bb58-f477d5929a7b 80d48e67-84ee-4674-ad3c-8fd52f9755a2 cb780c10-8810-4384-b829-954aab1c16c8 a4b92b76-ff87-475e-924b-840f652fc019 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KJ-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ff3fb0e4c8af80ed9c012bf598bca00a.bam 6455745715 ff3fb0e4c8af80ed9c012bf598bca00a 9adc022f-85d7-4504-90fc-89e5f41f0c35 8be2b0f5-7bad-4720-b13c-e95b32bdb933 7c93642d-7e05-40f8-b1ef-a014edcfba42 4c1108c0-ed8a-4caf-9417-ddfb6352c61e DG 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A913-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2b1cb8c1bf70abd4baa133b8a9d49a76.bam 7306878729 2b1cb8c1bf70abd4baa133b8a9d49a76 9bca1a87-8749-4be6-954d-b7185ac703f7 23184977-f920-430b-9a3f-50b170f340fa c9f519b6-73f1-4737-83cb-f5ef208592cd 3cb78816-01a2-4781-a3ca-a5ed38501fb7 MY 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XJ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 72af3a7fba7ab82b4cba829c2c937dd6.bam 4904174430 72af3a7fba7ab82b4cba829c2c937dd6 9be4da68-a506-4c6c-9c70-1d7d2fde1d53 43e79670-cfdc-4770-8acf-281e60dd42b9 e89d0cb1-6ec2-43ee-a6d9-b922b680af34 3cf4ca4a-c992-4a2d-b8b4-8b6bc1b83004 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UH-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dd3d2d6a736501618a227d9fa0c56685.bam 8562454006 dd3d2d6a736501618a227d9fa0c56685 9c123236-a23e-4326-a58a-4c720152f569 d81717ce-94e4-42f5-9382-b364b3f32082 6949c03e-067a-49a5-b48d-e9380a1b0b27 6c82f9d2-49e6-44ba-9797-63fc7b1a9260 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VK-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build da4f05458b71b3b9a1a196579286b56f.bam 9463433130 da4f05458b71b3b9a1a196579286b56f 9c715fab-6571-4003-9572-2c99188b2598 0d7c75a3-8a45-4361-b159-6644b42f2ee1 bbb96b5a-80e8-4542-80b4-2444cf1fe51e 3f2e0ac8-13aa-4fc1-a08b-ac22c19d5164 JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A23K-10A-01D-A16O-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-FU-A23K-10A-01D-A16O-08.2.bam 10813585547 a59a4b31af732a99012efa7683f90374 9c8e0b6e-27bf-40be-9039-d959d0e8caba be8cbd23-c2ce-4c74-b0c8-6c307a8afeb5 85abfd69-cf72-43f6-a7dd-97056f22c91b ad2cee65-ca6b-46f5-a145-227a18211b02 FU 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EX-A69M-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build df2617be96b9a650d2d1716ed04f25bc.bam 4664258528 df2617be96b9a650d2d1716ed04f25bc 9d3072be-c2ee-4898-b232-6e63aced3a5b e6a488e7-6307-4b66-ab64-31b087b53e90 1e4d7755-b971-4c6e-a2b9-dd83d92bc4c9 2383c560-97e5-4517-a330-04afb072b35d EX 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3Z-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 84ebdaef5cbbc6ed0a0cd2ff9db76edb.bam 6533662708 84ebdaef5cbbc6ed0a0cd2ff9db76edb 9dc877cf-8ecf-4700-bbc2-529f3e123861 3d8f4869-1fea-400f-b463-cc2ba079d923 bc2003b9-d489-4559-8672-d9fd2d82f2e8 a903ad9a-2ce6-44cb-b821-27de79576aa2 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A3JJ-11A-12D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e582af9ba2823feff215d24f322c6795.bam 6305582372 e582af9ba2823feff215d24f322c6795 9df08f2c-31a3-4e91-99af-058ad643ef51 ac807edf-6fb5-46c1-9fc4-9f43fb319c49 f150d999-cdec-427e-b8b2-00731c648989 3fbfda3f-0286-41df-999c-4ba50429ca60 HM 2012-11-10 2012-11-09 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3Q0-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c03b6f5e373823f296da9f9054ffec89.bam 6446429994 c03b6f5e373823f296da9f9054ffec89 9ee9ab22-5750-460a-b9c1-7998129870b5 262dcf4f-13c0-489e-a4c8-060e2eeaa8d7 20280122-a66a-4c83-8f25-0b9d97558dc2 04ffdfc0-a73f-47ae-9014-73870b69ad91 JX 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CG-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 970aa77d058b34f6993256b8d659ec34.bam 5174043105 970aa77d058b34f6993256b8d659ec34 9efe47fe-b025-412c-bb6f-b64ea1172bf1 f5472540-8feb-4027-8944-08c23ab4e912 f2c901d1-2039-4046-89b5-c2d45bcf10c3 e88f2479-3e23-43be-8c35-1e9385cbce08 C5 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A0TN-01A-21D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A0TN-01A-21D-A14W-08.3.bam 10367595865 11cb1adc1dbcaf52d206b335b59e263f 9f3615b6-bfc9-444e-949d-6af0360ef5f5 1a006bbb-6b95-4d82-8d1f-1b416a803c06 14c65927-b9dd-4ef6-9917-db7bc431ff2f 59b0b757-7d08-4b3e-9974-fd02747d3665 C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXN-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 54e398de0c7d169353bddb9bca3202dc.bam 4868289185 54e398de0c7d169353bddb9bca3202dc 9f4900e1-12d8-4a37-9c8b-3ed8eef20dab e1989b4e-4519-4c89-8424-7fd71cfd3f43 5f22e050-c172-4f2d-a1f9-6cb749b6ef98 00672dbe-c187-4cd9-9116-1b32e6559c83 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A50E-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f06ba2f999a46b65380ea611957275d0.bam 5122889580 f06ba2f999a46b65380ea611957275d0 9fec7d2c-4dfc-49ba-b7c0-d4057c88cb27 4a4cb3a4-1fce-481c-835b-786a236954d2 6a18d184-d3a2-49c2-bd4b-9c18f91b98c7 4277c6a7-2a85-4f8c-834d-f89d60bae5de EA 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8ZZ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a69ff34e138b2104cc8c91f35d0b362c.bam 3973840292 a69ff34e138b2104cc8c91f35d0b362c a00882b6-00dc-478f-ba5e-88f6ec72d7d6 69fd02ae-3922-4365-83a9-e7899b8f83fe 33bc6504-d9ab-4b64-a87c-012915f36644 2c6dc14f-ed9a-482e-bbe3-fedb9ab65757 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A51Y-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d10302ec7f450f7e98fcf090ec5997cd.bam 5526685782 d10302ec7f450f7e98fcf090ec5997cd a0bbc787-23ff-4246-8d2b-c7c1bd9635af 72a08b7c-3461-40f1-970c-54eedfdc0279 77da506b-e726-409f-b3eb-d41242862982 2283b95f-a2d0-4b58-b54c-d266ecb5b51c MU 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RD-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eb6cfe5dd49cb781971fc2bb9c74edf5.bam 6205466386 eb6cfe5dd49cb781971fc2bb9c74edf5 a101b9c8-ac0d-441a-933a-695eb2d82eb0 aa41db66-99b8-4d24-ba78-67271a579215 16363ef7-899d-4927-a74b-e7c03b3d8af1 0262e6f4-0b87-4a9f-af4b-8e1657cab3c5 EK 2013-06-08 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BN-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BN-10A-01D-A14W-08.3.bam 9636266669 2e1a6a7cd417c3b79000fbef35c88cbd a1ec78fb-5c70-4ff4-93f3-761fb2eeed09 e5fd677c-5932-4462-b28b-f47c9c1b3935 8a4da4f0-30f2-497e-8a7c-988fd6b813cb bff9e8cc-5194-4cb7-8670-4c0ed526df15 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-MU-A51Y-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0ae47bde8ada60ad9af6b88181e8bc43.bam 8994102664 0ae47bde8ada60ad9af6b88181e8bc43 a2386784-f5bd-43e0-affa-799f7987befc fa750e98-4ce1-4cd0-b560-ff2629b9fac8 77da506b-e726-409f-b3eb-d41242862982 51b871df-0b7b-44fe-b9f0-0e39ae6cb3a0 MU 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A902-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bdc705f9038ef965c9efcecaefbd153c.bam 6126930181 bdc705f9038ef965c9efcecaefbd153c a3011119-5780-4520-9939-8fac1b16ca41 b013d63a-53f3-44e8-b616-65628af0f91b 010a807f-9dc0-4e14-9533-dcf478f3d947 a7501451-af5b-4148-a984-0b3f88d2c487 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8YR-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cdce0116fd1186fafe314d540052e84a.bam 5528148316 cdce0116fd1186fafe314d540052e84a a3264a02-a93a-4fba-9b36-72d254769be3 f4fe6baf-d8ec-49e4-89fe-7162fc3d8619 be8b1c78-8cb1-4bff-b1fe-71ecdc454c94 7b72c774-966d-48cf-bb50-48e762d96922 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DW-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6a59d8b5d43c66acc9de92c3b1299b69.bam 5740598459 6a59d8b5d43c66acc9de92c3b1299b69 a34157f6-ae18-47a3-a546-14b7dbc8669e 42448439-f7e1-447f-af5a-555da8dfb379 5dbd5436-696e-40fa-881b-c2386573ac68 984fc14d-24ee-429e-8172-996c0060aaf0 Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GK-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ceffc092b23324f6aeedbdf5027f0a52.bam 5896710770 ceffc092b23324f6aeedbdf5027f0a52 a4224649-e3a1-4f05-8b94-930b82d00c24 0e28e4ed-b9a6-4d94-94a4-a2bcaed053fa d07d0a56-a25e-426b-8384-9d49e6545527 19410184-fc5f-4a5b-9c57-2016c3cc6942 EK 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2H0-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d926d42d2bbba23c6004d948cb132dbc.bam 6722027769 d926d42d2bbba23c6004d948cb132dbc a4580afb-73d7-4cfa-81eb-3fc2fb31ec8c 5dfbbeb7-8a28-4ce1-aead-6fcf508fd43c c83c52f4-3815-4f49-8218-cf80aaa62e2f cee04dec-391c-4c22-bc7d-d3dd36380db3 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R9-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3c5a21da0edddbcd47c697592f40ba94.bam 8232382575 3c5a21da0edddbcd47c697592f40ba94 a483c801-869e-4c5a-ad9d-1d30287b9a12 81d5dd18-5488-4e1a-b8c8-3f1d08495ebd 00ad0ffe-2105-4829-a495-1c2aceb5bb31 7efd873d-8165-40f8-a07d-69cfd68a491e EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HD-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 05071706dc978f94f98f9930666e6513.bam 10696613542 05071706dc978f94f98f9930666e6513 a4d232bc-3496-465a-a453-f52e3fbb246c ccaafdac-76a5-43c5-9202-e078e70d121e 12427b02-6e3f-461c-b271-6ab230f628e7 ba733b4b-cb5f-4ab7-baa9-3a30605e5ef9 C5 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QA-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 694020939f09263fd3ceeeccbb8c8924.bam 5324310805 694020939f09263fd3ceeeccbb8c8924 a51e3e0e-6c54-45b9-93cc-c28be12f3eb2 06c0747b-33cd-4adf-a6cb-a352643425af 1a3d5555-7013-4f06-878a-98944f075b63 383da56f-6642-433e-aa69-5c88f105e836 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XI-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 55f197836472035cef8211866b61e8e6.bam 5440198612 55f197836472035cef8211866b61e8e6 a52d2f28-9f1a-46c8-a9a5-de0e81c7d321 af5c461a-caf5-4077-80f3-a467f4044062 959fe574-054a-4fef-9cbe-a801a9a355de d257692f-0b8e-4b7b-9f6a-e573d9026911 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2H1-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3cf866c35fdf700c09b388db59bc7828.bam 7411954337 3cf866c35fdf700c09b388db59bc7828 a5404a95-44be-4dde-9c4e-a55410365aba 6ca9de1a-09d8-4950-9f9c-c1fd7d36aa7e 690a7b2a-7dc5-4504-9372-70c8b55e81c7 3b7ecde9-ccc2-455f-a935-a12895cda0fd EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CK-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8dc1cdfe47fbeba9a0e653e439fde003.bam 6844637132 8dc1cdfe47fbeba9a0e653e439fde003 a59f3a05-b376-4a3a-8db1-7cbb98260d27 a5ad3742-8d09-4cba-a882-37abf734f166 1c48393e-7de9-42f6-a6f0-2cbfb8359316 39fdbeb2-01fe-4615-8f62-e7d742d91108 C5 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A954-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 819fa3b4ee3f36ea19b40126abc7103f.bam 8849367291 819fa3b4ee3f36ea19b40126abc7103f a6363733-1e75-4501-af5d-63d0279ba4ff f83e71a0-7437-4139-9ca3-fcf4d74aa11a 9ba72a77-aef0-4788-8072-60c28902e55d 78147208-8115-4218-ac08-49ddc5e7a426 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A449-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8a8f185b15a1d64bb4fdc6985f1e1780.bam 6898492632 8a8f185b15a1d64bb4fdc6985f1e1780 a70724a9-6d7f-49a7-bf0f-b54e1b8d4120 1eb9870a-29fc-4eea-afed-b0b63fac10f1 eb0eb159-732e-43ff-a402-7f2d9f67daa8 ef0ae9ca-356d-4f5b-8f1d-acf8c02670bb EX 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BQ-01C-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f071077aa48a2da2216f8ee1aadf2bfd.bam 10895083741 f071077aa48a2da2216f8ee1aadf2bfd a71c0100-1f41-4bec-bd99-d7be3b4ed04d 6f36ad45-4cdb-48d3-b363-e52bcc64cb12 e77c3f70-08d1-40d3-b038-f09a519423cc 6ef38e19-07ac-4032-8fb4-59129a126d3f C5 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RK-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 37928e2b57e64ab4553eadae065ccdbe.bam 6108231829 37928e2b57e64ab4553eadae065ccdbe a7806951-6642-4a25-ba35-1fea5b035aba 4899ab66-79f9-45d7-8334-ac9137cecb72 acbfeb99-2b6b-4232-9ab5-a58549c6bc3a effc7cc4-57cb-46e5-aa64-ff8bb19d6bf3 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A901-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 324cd14376920d5ce28ef50f6f2334ef.bam 5950980040 324cd14376920d5ce28ef50f6f2334ef a807c275-e3d9-4973-8898-4f1f073bb697 3bd68b9f-6ea1-4f42-b3bc-8ca74838b53e e8f07d20-d043-4c69-8898-87d0f0fc5a9a 030fa1d2-6da0-4f33-9574-f2d703751d1b C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LV-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 568ca2acff10814c04ea071c0203e6d4.bam 5996156446 568ca2acff10814c04ea071c0203e6d4 a825b279-094b-4787-b21d-dff97d3c60ec 3269608c-5dd7-452a-976a-31ac971aac2f 00bca18c-b3d4-45a3-8f19-034cc40449a4 cbad0c55-915a-4f65-b040-57111ead3bde C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CL-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 89b09b818bdc8885c04056772dd2102a.bam 5181510294 89b09b818bdc8885c04056772dd2102a a8a2b398-4ace-4f45-9169-5dd9aaa84538 ed9e7b75-2998-4c55-8fc3-7c2ade72eb95 bae2af5e-484a-44f7-ad6b-66137cdae300 20d8922d-ed56-4011-b4eb-0efcd4a40a87 C5 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A952-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b88eec46fea6a60ff80fd37cc4e2ca56.bam 6592376946 b88eec46fea6a60ff80fd37cc4e2ca56 a8baaf4b-b294-477c-ba27-daa1a3be4c54 62ac07b3-831a-4554-998c-aef5f865ad3b 9fa42fe6-ccd0-4850-b08b-97b20eceb8df ca8fa362-bd1e-4af7-bdb1-d1b2e113b551 VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A950-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 47ebd87baa31fe1f4ad03442c1cf2b9b.bam 7017719547 47ebd87baa31fe1f4ad03442c1cf2b9b a945b09c-4705-40ac-8d80-4bcdb98503db 18ea1b12-81d5-4466-a568-35195d4dcce4 3d190f07-2f79-4ee6-9f63-0b563dc05c74 6ae47534-32ce-47f1-9536-8774c525c226 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VI-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 590f62a3d1ff9ceb47c95271b7e83e41.bam 5690221509 590f62a3d1ff9ceb47c95271b7e83e41 aaa7b6be-3e6c-45f9-a949-45ef87f36104 3fa0d743-1312-4aa6-967d-7ec81af780cd 53eb4c4e-0719-476f-9b2b-279d438d7710 79205cbb-4cd4-4061-8313-898ecadb9f11 JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LY-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 79336789b2b54dd5a911c6a486795271.bam 10728822028 79336789b2b54dd5a911c6a486795271 ab29dda1-d844-4de7-85d6-4bac7ede8231 433b41e8-d79a-4da0-a700-821cd97cc1b9 e733f289-a0ec-478c-aad9-1378ad26ddfa 80879749-fd29-4988-a078-cd34d4745453 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3Y4-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2b7598e0f7962b89883ddf9e17ddc85c.bam 7156530726 2b7598e0f7962b89883ddf9e17ddc85c ab72e798-d364-4395-a6e0-7121fdab9a95 c151cb80-3624-46a8-b4c6-9141699c4cd7 3ac62513-b5f4-4063-aabd-dad08a1f56fb fd1c17d6-7c6b-4c0e-bb07-beee96129208 EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V3-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8d20ab99ebfc6be0715554bfd5a5587e.bam 6960971006 8d20ab99ebfc6be0715554bfd5a5587e ad8c26e4-d428-4f41-bad1-75c866a07ea7 eae83160-22ca-4f7d-9a62-d04a2080e0c2 1cb1d2ca-dfa6-4c42-9da9-c711dc5aab5d 2ac95c68-40d1-4b92-82dd-23a02e51d65a VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1ML-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1ML-10A-01D-A14W-08.3.bam 9143397502 031b0649f33c06e92ac825e3bb0c0e7d ae7ba2ba-16ce-4a76-b42b-870088dda7dd 428b7c23-dee0-4bb4-acac-4fd6042ce07d 374f614a-bcd1-4283-ac6f-fc27ddc79987 49dca437-04b4-4224-ad9e-c81abfa2df0e C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-BI-A0VR-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A0VR-10A-01D-A10S-08.5.bam 14614813542 242af174ec0c3eaf0caa138a48988a56 af3fa778-12ba-41f8-a2ec-f6b1e2a5e315 e717369f-73df-46ca-a7f2-749b84b96616 39a3120c-0889-4a10-816a-e07528a35f7a f978edd5-23a2-416a-b87f-b1cf6da45ceb BI SRS202288 2011-06-09 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-DS-A0VK-01A-21D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VK-01A-21D-A10S-08.4.bam 16809781257 b56e12a4ed4cc3ee99b2a2a1385af6de af8a3a1a-dae9-4e98-95a7-8b232b1fc3c8 32b46e90-0ae6-4a05-a9b7-2789bbbe302f 5ed3c95a-10d0-4cd5-a54d-523e81587fb1 0cdaf7e3-1b47-46cb-aff3-5e6762e8f094 DS SRS206885 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A439-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4f42db906f5b41c390db77a9e2665696.bam 6788703283 4f42db906f5b41c390db77a9e2665696 b022a263-aa34-404a-bd23-b567ea6d110a 4a6f9f51-18bc-450a-84a6-c29dc780ab8e 3edb62c1-25ad-4deb-a005-e881a887d06a 388c8abb-83cb-4999-ae5a-b146438274a7 EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UY-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e5af499a13a91d6235a4c3456fe20624.bam 11983955995 e5af499a13a91d6235a4c3456fe20624 b0c4851a-9fd9-4d17-8e3d-8018eb87d9c6 a686400e-59a9-47aa-85ed-d0250bcd2d71 a1b99260-8643-4cef-95a0-3853d64762b7 bce456cf-2c7d-4959-84f1-3cc4d69a1291 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LZ-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 80866b62e505324b7f98146cd1d16037.bam 15096175734 80866b62e505324b7f98146cd1d16037 b0f8152a-0251-40eb-b780-cd820dc4f131 32bcb373-b823-4591-ad69-0f9cb6ce730d be8fa67d-c2d3-4fff-82fe-a46ba1fa8df0 6b9f4254-dbd3-4d82-bae8-d43a4915a7cd C5 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LT-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 10c8aba03b79a473b049e2771a5f3a0f.bam 6102311358 10c8aba03b79a473b049e2771a5f3a0f b1c27851-8c9d-4d1c-852e-4217ac104aa8 0f6b355e-3898-4be6-be97-da0c3840a4ed fb66b7f5-22ca-4d4d-97c2-30e6edfff781 eede6958-96a5-433d-8823-503b58559ed4 C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LS-01A-22D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bc852ce57cf1c7fdd9124d25afbf2bd4.bam 6807434933 bc852ce57cf1c7fdd9124d25afbf2bd4 b1f26df4-f883-430b-b011-2247bb2db7ec 27dabab2-d65a-41c4-995a-f2c9b7adf441 185e1520-92ee-4af5-af15-fbeefb352c99 79248694-77e1-4fbe-8c94-64a308fc982d C5 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3QE-01A-21D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 949429624627d6c5ccc79d7e705e1c1e.bam 6167202632 949429624627d6c5ccc79d7e705e1c1e b21c8dbd-409a-4eaf-bc48-e251d126addc 73250f8e-2d08-4215-8cac-bcfcc9165aa5 a4e444b5-bbca-4ef0-b92f-908d608cbb91 36ffa53d-1404-49c0-b9c1-a3eb1ecbc6b9 EA 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EI-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 99d433eec59926450bbe0bf07aafbaca.bam 4111905393 99d433eec59926450bbe0bf07aafbaca b248862a-92c2-4275-a6cc-7a0178786d41 42b56687-7ac3-435b-a086-01a9adb68850 7b228c3b-e604-41a1-9b76-8dd3d5a59ffe 6203a3e4-47b3-4457-b112-56e36b4eac31 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A958-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8214acf922254ac0c437a9a61fb7b7bc.bam 13048943704 8214acf922254ac0c437a9a61fb7b7bc b27d3cfb-7358-45da-a5be-a07681048b1b dd703629-6903-47b3-831e-21414877d9cc 97cf3268-9756-4659-9e98-f200f96a91f4 8d7ae762-4d4a-4bed-a1f8-331a93c4d89c VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73Q-01A-21D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 34fdadd32d331e59c4cf59d4b9e31257.bam 5533685104 34fdadd32d331e59c4cf59d4b9e31257 b2faa242-fbdd-4805-952b-f7071a38b1dd f903a679-b170-4fea-8590-4c4123c022b7 5c72bda2-2ec0-455f-ab27-7247fd5ffff9 c7eae01c-cb80-4eaf-b0a4-93a40632f6c6 Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MJ-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MJ-01A-11D-A14W-08.3.bam 9768938549 655926835cdb2bb6ca336a343527bad7 b3d9cacd-b898-4a01-a7ab-4aedd0ec56b1 85ef0ee0-dd3d-4733-89e7-1fb876ad266a 23f011e2-c025-4494-8016-2140cc8d4bce dd926c69-675a-49f7-9494-d85a489b8982 C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A3HT-01A-61D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b19f44f56c5c16f24dfec3fe7e41a98c.bam 6690098868 b19f44f56c5c16f24dfec3fe7e41a98c b42582da-f7cd-44f3-bba0-bb8c47662a16 8d78b37c-09aa-4aad-be4f-d6c128242f4f 3c5b2452-014b-495f-b86a-f522ed84bc3b 8460c1e5-0029-4d66-af11-373324347800 EA 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A1H6-01B-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3722b3fb3b695e259a5d730c2eb80a49.bam 7245389173 3722b3fb3b695e259a5d730c2eb80a49 b4514121-ed93-4b11-8344-cf589cdaf486 0267fb4a-5fa6-4ed0-9e17-e8b18d9a9b08 1fe594d9-4240-49ee-8afd-c7d16a377181 fe018d31-eee8-4335-96a1-95eceabfadf1 EX 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GM-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86e12a579ec4d8f499f8cff6a6efbd86.bam 5091012620 86e12a579ec4d8f499f8cff6a6efbd86 b553a851-249f-4c33-8695-69857019c942 23c04bee-2928-4d86-9d31-0e46da21cb24 cb780c10-8810-4384-b829-954aab1c16c8 1cfb672b-eb3d-44d6-ac76-bf3993632caa EK 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXA-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6208d2ab4e1ff4cd72edd8f544660679.bam 6693363248 6208d2ab4e1ff4cd72edd8f544660679 b60213b5-b280-49fa-abc9-81544d41f8e0 491dbd5b-111e-4710-86e6-a7e817c2f79f e8de2228-3aaa-48ad-a2e4-2940280af6fd 95ecee61-57ca-46e5-9042-f304549bba71 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3HZ-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6fd7e112b560ed34950a8bc8dbfcf4cc.bam 3669228085 6fd7e112b560ed34950a8bc8dbfcf4cc b68a5185-a145-4016-ad4c-a872afb9aab1 b0c92b76-7ee8-44bd-a5c4-5dc807bbb8ed 6ff12a54-10da-4941-bfea-7b66e19b4be9 6408a1f5-f5f7-40c8-a2ee-cb8038c15c95 FU 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U6-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build beed00d72a83a1b8f6b9eb96401824eb.bam 5647185658 beed00d72a83a1b8f6b9eb96401824eb b6cca406-2c04-4a6d-b841-f4c00e3b55dd 653e4ccb-c7db-4e1d-995a-21f83579ecef 98784bbe-e286-48df-838d-1a88040658bf caab3aab-214b-4ab3-823b-b8fe790514cc VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M5-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M5-10A-01D-A13W-08.2.bam 16999279292 30839d697ae5318046a287c63e963c40 b6ea256b-4730-4b66-b499-c1f1a71b77e9 d260e788-4165-4610-a331-06e6cd6e0374 0fec73a1-8d3a-495b-8008-c52f190f4270 4666f9bf-c9ef-44cd-a84a-c652051abdba C5 SRS203068 2011-06-20 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A94W-01A-12D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4f00286c36654cbeaa5bab5967d0ae4c.bam 5229916500 4f00286c36654cbeaa5bab5967d0ae4c b7f0eb89-46f1-4f6c-97b6-32d871fe0ce6 79d2e46b-ce1b-4de2-a3ad-a7dad2c93284 2f6a0e87-1e6c-41f3-93e0-3e505fa654b0 2fbfb3cc-7cd7-41ce-81f4-4a4645840629 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R7-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 37d02d3e7193e64f59c3b441df19249d.bam 5636110172 37d02d3e7193e64f59c3b441df19249d b8294456-297e-4043-b53a-c62708ffb817 c7ae530e-5804-4f7e-9618-d2c8d5b7d8c9 d7a75bf5-5189-4978-99d9-fcef91c9fbd2 ee9a22df-8612-4b71-af3a-6b16c73197ea EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8Q9-01A-12D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e8eb8a4abcdf5d7e20f3c80edc68f119.bam 7824178598 e8eb8a4abcdf5d7e20f3c80edc68f119 b8a66697-9edc-43ba-aead-95df3405827f a8c468ba-d8cd-4af2-a862-20e6941b4e5d 5798d741-c198-4c14-bcc2-e3b17caf1be3 a6ade763-6274-43d0-aab5-ae6eef582fdd VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A902-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4b6b9deb3aff721b3937f193ee146b88.bam 6432580656 4b6b9deb3aff721b3937f193ee146b88 b8c0e931-dfa9-48a0-858b-4d697646f385 5d5fb337-01d8-4c65-a073-48af61383137 010a807f-9dc0-4e14-9533-dcf478f3d947 1210c62c-d95d-473d-b088-afd93cc366d5 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A411-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0e97e50ebdd99b95f77d0344342c6d6f.bam 6311791817 0e97e50ebdd99b95f77d0344342c6d6f b90461ff-0243-4121-b7ab-a7af90fadf59 13cc40ed-7de6-42ff-885b-bd6965e8d657 84cb84d0-7c7e-453c-8cc5-65b5af941028 cb601af7-b63c-4fa2-b8f0-256002e19007 EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UP-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b730cfe0f00846ccd420121eaf8f3ab4.bam 5326309237 b730cfe0f00846ccd420121eaf8f3ab4 b966c8b0-4b3c-4b36-9aba-b3a975dbc012 8555e501-0251-413b-889e-2d6e5edaa513 f0cfaacc-30e5-4e54-b33a-f0fd5dad620e 04b8f6aa-7f97-4d01-a890-d9e6aa1d45df VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A953-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ddb6285ca948b85e6f038307bcd140b6.bam 6065546921 ddb6285ca948b85e6f038307bcd140b6 b9729639-2ad1-4bfc-8b76-5df48414409d d96689db-e3c5-4e01-9633-534e5d8c0934 da901e97-3a1d-4952-8254-9c4e60d2812c 153f9e2f-4302-4d63-9285-1fffaa30746d VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2M2-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 945877940aebf9c96832b22e5e26321d.bam 5778184218 945877940aebf9c96832b22e5e26321d ba2daf96-7747-4b08-8036-a7deba9e3add dacf14e9-c5e3-40ba-8ff7-50434efb1751 77d53d4d-3b07-4c79-86fe-6ac812968f39 8b9fc1fb-60a8-4457-bd2d-d993dbf515d1 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X5-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 72b67922a0f259e44c69a41606cb143f.bam 7201675873 72b67922a0f259e44c69a41606cb143f ba459a76-7001-47f0-b579-a76b599aa22c d4c8d571-46c6-4caa-a3a8-0dfb9590e663 aed93a3a-7dcb-4ba9-84c0-bc735cbd545f 39b3dd96-515b-42b1-ac56-66602e0cf8fe C5 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M8-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M8-10A-01D-A13W-08.2.bam 16274172222 a38bb59faa1fbfcdbdebfe58943ab992 bac0f651-a6ea-4a59-8997-43128e549c9f 358a6d54-df1e-4648-93eb-35175ae7c123 110cd100-5730-4873-9fab-2ae6c8732062 d551f7b2-6778-4983-a8be-d101eb7e5c26 C5 SRS203095 2011-06-19 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXJ-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 88b99fa310afdbcfe950b246ecce75f7.bam 7757044859 88b99fa310afdbcfe950b246ecce75f7 bad3bdab-8445-49e7-afe5-0bc17f9b525e f5cda0e6-0207-4e1b-bcf3-a7967b0b0171 6b60bf8e-29a1-4c6b-9ead-aea4ddc99064 bff8b8c1-bea4-462b-beba-fbd679f192cc ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A5XV-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fa0c9ff54a61caa4f5735e440eda1cb8.bam 6880186548 fa0c9ff54a61caa4f5735e440eda1cb8 bb266602-0608-4629-b676-8ddb6726ea25 8e00f794-d9ca-41a6-9326-27f8b2ece8ba 9dba5a81-3587-4f5a-8d19-e0b0aed0a677 8d5976cf-7e2d-420d-ba18-477a43ccec54 FU 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RK-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 93b883f5ac9ee78df800c56af53c57a1.bam 5345990322 93b883f5ac9ee78df800c56af53c57a1 bbb3846a-5d0b-4303-a32d-715807a73a44 db76d80c-fc42-4c87-a81a-b24328659356 acbfeb99-2b6b-4232-9ab5-a58549c6bc3a b51d8c9b-f387-4e28-a592-b53fe6c2fd8b EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PG-06A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TM Metastatic DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build db4bdcebc97b43ce16e66478cc3e7764.bam 6706440202 db4bdcebc97b43ce16e66478cc3e7764 bbf04139-0f19-42f2-87cd-b35d3bf815e7 98a1eefe-f96f-4a61-ad6b-999a1379f404 53d99a89-6ebd-4637-91db-7ce43ebc6b8b 952e4a17-f891-46b8-ac16-8d6c0751fb1a UC 2014-11-27 2014-11-26 2016-01-04 Live 06 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UM-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a147ed80e7a020690ca1d744941fb864.bam 6594308532 a147ed80e7a020690ca1d744941fb864 bc326b62-1952-422e-9861-a8f32ba832f7 c7124657-44a8-4e0a-8f47-8891d96cf958 ee2c9743-eaa1-4f0d-8d35-e96686ac3913 24825a46-bcf8-4e14-a3a5-e2486c54e247 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HT-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c2d8a20e8014e304773765b7b24cb7e4.bam 6601826646 c2d8a20e8014e304773765b7b24cb7e4 bc487663-dc42-4f49-a364-995a4c98bcdb 434e2876-17fb-431e-b7c8-265f9d172e31 3c5b2452-014b-495f-b86a-f522ed84bc3b 89ef7b55-afe7-4eac-84e3-b0df9ecf4b67 EA 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3Z-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 58a87612860d0dd4647ea643fee1afdd.bam 8506961613 58a87612860d0dd4647ea643fee1afdd bcc11a91-3ca2-4060-b271-c2ba874c4db4 216b5ea7-c2d9-4fb5-9b1c-7fb2ac0804d6 bc2003b9-d489-4559-8672-d9fd2d82f2e8 ea75c7f0-6bba-42f8-8d0a-5a592a7d5298 MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UL-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9b9cbb6a033c6700d3775e780e2ee200.bam 6499511965 9b9cbb6a033c6700d3775e780e2ee200 bd010bd6-2741-4736-8000-173b4f36b828 39ae1f8b-ca36-4de2-811c-fd3f9bf13449 7abaca8f-962e-4f9d-b63f-26c131bf5961 4dd233a8-e3eb-4c14-83e5-fa3229430895 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HR-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f047ed0af2656da2488d612ec33379ae.bam 7681562725 f047ed0af2656da2488d612ec33379ae bd44efaa-a015-4926-9cd6-395f998a11ca 3203ee43-42b4-437d-997e-b0bce91d7015 638035f6-2909-4a44-980f-468ac5d74e18 066a7341-746f-4602-9c74-c42683b1ecc0 EA 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VN-01A-21D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VN-01A-21D-A10S-08.5.bam 15236649078 16d89a22832edefbbd2238b9748edf21 bd65e648-a49f-4d02-a0e0-7441d16819e4 dae06e68-c43d-468e-a526-f52e8f549873 f8d342f5-9b92-42e1-8b0d-0876cc26965d 0bdb7e71-6de9-4949-bf71-abb9c7f5bc45 DS SRS206912 2011-06-08 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9UR-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86d98de0fdf53c1684641472388d8f99.bam 6218886439 86d98de0fdf53c1684641472388d8f99 bdb5d311-3022-43c9-8db5-d7f5a31b8e81 eae360aa-1a81-40ab-826c-8a042744aec3 adc60720-ac20-4e73-9c37-3ad3119c07d6 5a8cd4a4-4a2f-4765-a2c9-9b362c867822 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BE-01B-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BE-01B-11D-A13W-08.2.bam 17359786297 554f1e5504460744d73aee63aa3f844d be0ca5a8-437a-4111-b359-67fa4c2f8367 8560d2cc-c862-4f4a-8b06-c2f4bcd6a0ac 2b6d2c15-8bcc-41ab-84d6-601442f4378b 7088f4cf-bab7-481e-a0ec-759124ef80ff C5 SRS202999 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2PI-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3a0215945f834202e97aba870ece18be.bam 7513805425 3a0215945f834202e97aba870ece18be bef78924-a8f0-4b84-bd57-bea6e2b24c47 0b319d95-644c-4b1b-8e96-36f215a5732d bfd82578-8b60-4c23-85a1-fc14a1cf5f12 e7434c63-5eb7-4f98-8483-2f77634dd1fb EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HG-A9SC-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 92b94d3d32a273fbc4164cc64c3701e4.bam 4645221647 92b94d3d32a273fbc4164cc64c3701e4 bf8af6ed-dffe-46f7-9f1e-8a65f8e348ee d86e6264-20e0-400d-bf12-2ef6cd998dc5 cf87812f-6db6-4592-9842-c62b3e4ff03f 01a0eb11-7ad7-4da2-ba77-91d9c02b6962 HG 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A913-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c228d385ade2a44d75267d0233065c38.bam 3745976666 c228d385ade2a44d75267d0233065c38 c08b5c7c-8ec8-4811-9143-1837370ddd9d 2e0cbe6c-d105-4c4e-8ae6-5bca0d4b658e c9f519b6-73f1-4737-83cb-f5ef208592cd 76cf81fb-771b-43cf-9aa5-8342fd133626 MY 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BL-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BL-01A-11D-A13W-08.2.bam 16693471773 f53f12d6a4bff2ce392bc04a8679305a c1a48018-542e-4ba5-841e-e0b9913adb9c 15cd6298-445f-487a-b50a-04da5002b6ba 03c3fe57-ae85-4e45-9657-c3182ab5e124 4bf03dc9-3776-43f7-b5f8-31e993f59f63 C5 SRS203044 2011-06-19 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-IR-A3L7-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e181464387c3adf4aba8d2b6f835885f.bam 5196974229 e181464387c3adf4aba8d2b6f835885f c1b6a58b-bd39-4fb9-87e6-00e339e1ec4d 0af7301e-afd2-4a54-9421-a69ef71c956e 66229dd6-c771-4455-a90c-c66fb40cf7fe c5375b9e-e0ab-4d77-bdf8-375405a54989 IR 2013-06-08 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RA-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 473031a5159239b496ca975a220fbd41.bam 5684921335 473031a5159239b496ca975a220fbd41 c1d3e16d-115e-4bdb-98fe-6486134587c0 5d134e2a-722b-4e87-93bc-5e9dae4c51c1 ada77320-fd05-4e43-be72-864391044b35 cf39d26f-ae75-40ee-a809-3f48e2558e54 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3NI-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 90aa78928fed2a8621713b0442500687.bam 6243896144 90aa78928fed2a8621713b0442500687 c1e5ccaa-e02b-44d1-970e-460629022953 e3b5f179-5533-4e21-80c8-30e8b2074f2e dac27c24-cdbf-4527-9214-178fde3d098a e949db99-6fe2-48f2-9d45-469a7909ba87 FU 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CK-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5004b48690f50d5f7f038f247c9870cb.bam 5464577614 5004b48690f50d5f7f038f247c9870cb c1fc65ba-f4f4-451e-b622-56462e561aa9 7934ac64-f6c7-4305-b8e3-2443a39b55e7 1c48393e-7de9-42f6-a6f0-2cbfb8359316 b770fe62-36a7-4a89-8091-2fdd7af44dad C5 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A1QT-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-EA-A1QT-01A-11D-A14W-08.3.bam 10076001719 ac9c0ad7e3fdc8f5d693fda54cc1ca60 c248d552-d4fb-41c1-9dca-5929aa8eabe4 d9ee252b-040a-4066-ba74-a9927bcd3197 970b619f-2eb5-4557-a7b8-5def35943c58 f61cfdd1-9055-492b-888b-87b524d3f869 EA 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A3HU-10B-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e3507b9b6d91e12f88ee8c92a279b293.bam 8634879500 e3507b9b6d91e12f88ee8c92a279b293 c25e9c3e-8124-4423-ba7c-554760662239 4d54f9a2-ccf4-4379-ae9e-00d1e01b80dd 9912432e-74bc-4846-93b4-fa2bf8070bd1 aaab0578-2c13-4eca-bfd1-06fb6840756e EA 2013-06-19 2013-06-19 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KL-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 57ca9171061dc9173f48fe7d8a2e2870.bam 6679657632 57ca9171061dc9173f48fe7d8a2e2870 c2859b01-fa4e-4bb5-9bf8-ffced7659188 8b2fc007-7f8e-4f12-b68b-3c19c9911fcc 2da977fc-8b46-4c40-9636-b12fd36a98e4 3a67971e-6297-4128-a1c2-65ec1aa0bbe8 DG 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VG-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a97e4cc4d969b7fd99ce5d338dad538d.bam 5209866944 a97e4cc4d969b7fd99ce5d338dad538d c2ad24a5-0980-4b32-bd33-35a9475c76ad abc2974a-e46f-4080-8dea-49c60ee75673 0bd52d75-5113-4ef1-bc75-509f59eaef2b b6979d87-1888-46d4-bceb-767c5a0b71b9 JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RE-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a17910722b9ac5240700cab8f2706dca.bam 5175030635 a17910722b9ac5240700cab8f2706dca c2f285db-4bb9-4519-a583-95b7c0cf13a2 e472c85c-6544-4277-a4f5-64e8199980e1 9aa36ac2-8418-4109-a3c1-63ca8742baab 49b39f9a-a7be-40d3-a3d7-3df579dafaae EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DR-A0ZM-01A-12D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DR-A0ZM-01A-12D-A10S-08.5.bam 15319939412 61cae2bfb297ca065d4b8e51795c91f1 c3d51414-887e-4253-ab47-51ec9228322a 0a3d0def-beb2-4b64-b1a6-4b44d8544896 748aada0-448f-4523-9893-3d9618fdbe18 ef1b5ff8-8623-43c7-b3ec-27bf332e11d3 DR SRS206876 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-JW-A5VL-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1600506a2061e0763aa4c1ad5793cfde.bam 6386629280 1600506a2061e0763aa4c1ad5793cfde c4745220-c778-4fb4-84c1-3325cec5918e 63c6392f-5af1-4586-9b4c-ca1beb09fc9a d1a5b028-ec79-456b-81a1-69838e2922df ca60fb49-741c-4bf2-b381-5a0be5a0569f JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RJ-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c5102c0c98170d651507e8638e748091.bam 6584248755 c5102c0c98170d651507e8638e748091 c48da17d-6c44-4c91-b6bb-aa556e834ae3 725bd1b1-1da8-473b-87c4-43babf0dd4de ccd569e9-dcbe-4280-8c21-6bfe4ce60d7a 0c338e46-f82f-465a-b779-a024f269939d EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HS-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 770158cfc6013ac94fc9f8da9bccadec.bam 7777643521 770158cfc6013ac94fc9f8da9bccadec c53f7fd0-3abb-4d0e-8837-359d9231e275 fbd305fe-ff82-4d41-9d17-34b1ff2f570d 753ee373-fbcf-4349-b9b2-5a41936e27e9 0835fa38-9870-472e-b9a0-2a2652807bc5 EA 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HF-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a6f9b4ac751667817f9547da4444cc61.bam 12690157702 a6f9b4ac751667817f9547da4444cc61 c58b7ad4-78bf-412d-99b1-0126c1c52906 4627ca0c-13cc-45e5-aaa9-e2e7026780b5 085df27c-9bc2-425a-9a49-547d692ea028 79c43439-bc01-4033-85fa-3191a79277c6 C5 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A5YI-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2b99d2de7f4072ff8ab2aa7fb1de5842.bam 4410113496 2b99d2de7f4072ff8ab2aa7fb1de5842 c6165125-c569-4cd2-aaef-3bf705b0330e f75e2c1e-af33-4c30-8df4-57c297cb5e0e 5e972e96-7271-439a-905c-6e308c1ef29e 935a0c11-f6bb-4f54-8635-944ba33adf82 MU 2014-05-30 2014-05-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZX-AA5X-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 223ed0e7a2a28b4888d48e27659ac4b0.bam 8681160540 223ed0e7a2a28b4888d48e27659ac4b0 c648ceaa-ae11-467b-8dde-155c0f26114e d305bae2-19f6-440c-9eb9-f0395a2b3a2d 4756acc0-4e96-44d4-b359-04d64dc7eb84 01bd30a6-0600-4e53-8ef0-bfb5f09fc88d ZX 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A1QT-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-EA-A1QT-10A-01D-A14W-08.3.bam 8728733328 926af1ae9aaa2221d5d223ce87dabacc c7338ad8-3134-48f5-866f-c42493f462a0 839cef74-9ae3-4b76-9b22-46281453831a 970b619f-2eb5-4557-a7b8-5def35943c58 f21bd762-551d-44a8-b9a8-571782094f6c EA 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EX-A69M-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ef2dae0714b09e1b3707f18ee1d55490.bam 8754708150 ef2dae0714b09e1b3707f18ee1d55490 c76f52f6-54b5-444e-93e1-d24a2e0d5a19 41b98960-ba0c-490d-b43d-75d8a1ff9e04 1e4d7755-b971-4c6e-a2b9-dd83d92bc4c9 be647e6a-0068-40d5-9649-a08c7ad849a1 EX 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A4BA-01A-21D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e71b9cfb77d10bd244a537a2df55b1b8.bam 4852813478 e71b9cfb77d10bd244a537a2df55b1b8 c817ac65-d273-4023-a663-bf9823834d8b 2c562265-1507-4db5-a860-7f5957062943 9e79059f-3453-4aa6-9849-55a267c711a4 26cf8464-c376-4c53-8e41-35e9ab326f0e EA 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CH-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2d5ba0d0caf129cb6ff661add1aa548a.bam 6177719503 2d5ba0d0caf129cb6ff661add1aa548a c82c17ed-93fb-4edf-9723-a6f48d9876cc 053a4c1d-56e5-474e-bedf-171f1ee2bff4 d626a732-af64-4dec-b4bf-3cb761bf4c8d ce004e44-63f5-403f-8bd7-2ed8dace6a3e C5 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HQ-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 290d582ed431b174031b61e2fbe96009.bam 10002642163 290d582ed431b174031b61e2fbe96009 c82b6b48-3400-4942-b7d9-095b981e0f18 52acd6b9-e95e-47ff-933e-eaa927aa6cfd 6bf00b63-89f8-420c-8d36-f680fb0908b1 e4b391d9-2f3e-474c-afa0-fdf4fd11fdf9 EA 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3TX-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5ba1bf0f416bb253f9eb7764b1688ed9.bam 6640609354 5ba1bf0f416bb253f9eb7764b1688ed9 c8350120-a6f0-4720-9ed6-a0565e3cd117 c7b0f4c0-04d4-4fce-b0ac-bb10ef01605c b75644c2-b515-41ce-9b03-842ef5208a17 7b4b0f8f-f929-4bff-9728-2cbdf071d6e8 FU 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A50E-01A-21D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8d7b032a63d02ab2359625a6e5aeaca3.bam 5381825410 8d7b032a63d02ab2359625a6e5aeaca3 c84f85a7-1316-401e-ab3f-b6ca005b5512 0cb0dca2-8294-42fe-aec0-02c8ce379e31 6a18d184-d3a2-49c2-bd4b-9c18f91b98c7 cc589e45-a94f-4065-a705-8110f7de68cb EA 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXB-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2cdb2d88eca9f1821e90f49e3c2d99eb.bam 8854399842 2cdb2d88eca9f1821e90f49e3c2d99eb c85d3dec-63f1-4b00-b434-bcfad840058b dd0406f2-00f9-4f8e-9a9b-193b66a7c303 88f0aa4a-6bfd-4573-b136-58f84f867f10 65cf8a15-a1f6-4e86-b42f-3e52296d169f ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-GH-A9DA-01A-21D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 545ef7c8753511f0b5384d7314608ee1.bam 3944721752 545ef7c8753511f0b5384d7314608ee1 c8e26ad3-5acb-41e2-a45c-718e74291d69 b515a346-d001-4a51-a6f1-44649ad7e1c7 67195401-9099-4ca9-9790-f42bcb815289 bb5ef93f-c950-482b-b77d-4b0974c1b57d GH 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A3JK-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 01a1ed50458ce9f1fbc171f0df629291.bam 6927171537 01a1ed50458ce9f1fbc171f0df629291 cb006bfc-a086-433b-8b9b-750f185f1043 efaa9ff8-bd77-417b-b6f6-232110c585aa 7c4cd55f-750e-4941-a9f3-0632a75d6531 88c6e5cb-d33e-4042-be7b-12a081acdafb HM 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V2-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0637151f53553467d8d8d815af33a9db.bam 5629324887 0637151f53553467d8d8d815af33a9db cb043cba-f666-4912-a159-3eecdfbd53aa ad2332b5-5b07-4101-b8bf-4b58a2215e52 03804f9b-df7c-462c-8984-8eb3a5ed4999 80c5ed15-bee5-4d36-b8fa-06dc70ab42e9 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QH-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 01b86c2a26ce2548021c30c956694ced.bam 5773434323 01b86c2a26ce2548021c30c956694ced cb4137ba-1eb5-4fa6-b616-5d2ba5800669 0d0fabb0-2264-41d5-9245-ec752aa48af2 c4f61715-ee58-4799-a5f4-0f5e27c4093d 4512fa54-e68b-4418-b79a-7a38b5cb8435 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GJ-11A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 256b262894c1775b7004bddfa9182960.bam 3576174757 256b262894c1775b7004bddfa9182960 cb6b0acc-875a-47d2-a83b-871042a095e8 f27085a9-4270-498d-bbac-d8314d57bb38 deda68dd-e9ad-45cc-9dbb-1c5836ef6519 d21c9094-664f-49dc-8768-178d56256b45 EK 2013-06-07 2013-06-07 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3WB-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 024281e4ae144a27aeca510b2fb5bbba.bam 7376308516 024281e4ae144a27aeca510b2fb5bbba cba5cf40-4ca1-49e8-b8bd-41373da3231b 08d5bef0-b055-4479-b56c-cd716d6b6a95 6868ba1d-b612-454c-8146-74af2f573d76 0334b0b7-115e-40a0-960b-6a3365cda3ad FU 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZD-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 918f927b519fd24e908130d1cf262f9c.bam 4527610188 918f927b519fd24e908130d1cf262f9c cd290f30-c59b-4145-9344-4fa60878d792 b8a74f15-4ec7-45dd-809b-4460c734ee33 35d677b6-0487-44d3-bbba-651eac7e0635 f5451a26-60a7-4e62-b0a6-8e92cb051662 EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CM-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 19eb17a404707d2f20b8d93582091b80.bam 5009205210 19eb17a404707d2f20b8d93582091b80 cd2b2881-2236-4085-bb0c-bf651a9bf46c 51e9d5d1-a9e9-4e3b-ab09-b2621e159d87 d223ff09-b80b-4368-9d80-a59dfbe4d820 361211e0-9c97-4ec6-aa9c-d6c3a7552ad0 C5 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3HZ-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 96a32e09ff68c315c92d0d860006ab47.bam 5290384456 96a32e09ff68c315c92d0d860006ab47 cd475e45-1251-4cd9-a8a5-91498a1c861a 2dd3e992-bac4-48ec-92b4-07797eb87746 6ff12a54-10da-4941-bfea-7b66e19b4be9 11958c14-eaf7-49cf-97ce-686341dd94c0 FU 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R2-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 598a4ebdf076288fc40b4b4e2c99f412.bam 5219684334 598a4ebdf076288fc40b4b4e2c99f412 ce3a5307-7930-4fd9-b533-18521a6f7981 ae505e41-657f-4eb3-bdb1-61094063cad5 f3cbadb3-3b83-47cd-b8a0-b0e10343a295 5d9ece22-0baf-493f-b8d6-0ca227faaf05 Q1 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3NI-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 660edfb2d63e66e58ecca66a204258ed.bam 6638251873 660edfb2d63e66e58ecca66a204258ed ce9c5b41-c602-466c-8038-fdcbdebaea08 6e026274-d385-4564-a813-d5e45e310088 dac27c24-cdbf-4527-9214-178fde3d098a c75c6fd3-79ef-48b8-b3bd-d097ef2a73ad FU 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MK-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MK-10A-01D-A14W-08.3.bam 9388197723 fae08468638aa726636fb5aa18f41d02 ced067bb-b4c5-4a12-8f41-b3f33cd3e6c8 68a8e30b-8f14-4835-bd71-f46248ff5495 b726f18b-b996-4978-9f27-b3a540e06270 bba1013b-00cb-4ab8-9621-00d31e6176d0 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-HG-A9SC-01A-21D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6cf48282d909c96a8decc36cc1613155.bam 6717853700 6cf48282d909c96a8decc36cc1613155 ceeaff18-e5cb-4f42-8d3d-77e4b19e7528 71705029-b93c-4a16-b072-c9fe4feb18bd cf87812f-6db6-4592-9842-c62b3e4ff03f 73d6b105-5623-42e2-9fa6-303d393d27b9 HG 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LX-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b935b97de21490e64d2c85ea60e83742.bam 6290134334 b935b97de21490e64d2c85ea60e83742 cf6d6a6d-d977-49f8-aa84-b43bc11e90e0 70f7d57a-4b25-4f5b-8e29-115dda15aaf8 b82f4c6d-530f-4b0e-8f33-995633cb254a 9d41477d-8b08-46ba-abdd-865bbaad1f81 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PM-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 776792a2ac583c188eb3dda0aae374dd.bam 6213678988 776792a2ac583c188eb3dda0aae374dd d009c82b-2d3c-48ce-8905-5cd0a91be871 a4c74f12-0942-4f62-a6e3-bca6765ead1b 085fb6d8-6265-484e-9307-8292386714b7 b62127dc-8526-4099-afc3-be2e295c7dee EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EH-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3f5807e42065a200bb33382e87bad824.bam 7964594671 3f5807e42065a200bb33382e87bad824 d0681486-ab20-47f9-b913-b93ac1e092b3 5ad01d0b-c282-4d12-a792-134c24638c8d 05026179-b1da-411e-a286-89727b1ae380 cc7d1f35-2c07-42dc-b2b0-98d404dfaba8 VS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A3JJ-01A-21D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bb785efa00ba76ad28c8b752b91c11d8.bam 5519098009 bb785efa00ba76ad28c8b752b91c11d8 d08a644b-dbb8-41e2-b3ca-3884f731847a c0addff5-04c1-4eef-afab-12566d18015f f150d999-cdec-427e-b8b2-00731c648989 5ccb1fce-2ed1-4d92-87d7-b5855275e3bb HM 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A8JM-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 17afaa5eacb08a27349b45b31a19bac3.bam 8218102172 17afaa5eacb08a27349b45b31a19bac3 d15c3350-c932-48a7-a4c7-dbb07f3a0851 81dada5e-898e-4be3-941f-cdb54ab4568d 1d730565-ffa9-4cc7-a713-c4b5b7bbb29f e6a85874-42ce-42eb-b289-4eecb7acc87e MU 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BK-01B-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BK-01B-11D-A13W-08.2.bam 17859759853 86e434549a36ec3fbdaf3e4f5c9eeefd d16b8db7-c880-4ad4-a3e7-1fc653f25d75 5d43e632-5604-499e-b014-43c85681529a 7df6c297-f2d6-43ef-973b-1f95676b0cc4 f23956c1-df69-40a4-bf11-aecba194f78c C5 SRS203035 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2RB-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 329749d4af60c5e32c5d7e74d2e757f1.bam 6736543338 329749d4af60c5e32c5d7e74d2e757f1 d1a06bd0-0852-4393-8dfd-349f89497cfa 4f7ace06-cf96-4991-97de-56125566dc98 f92a994d-b080-42c9-966f-34c1000865e3 8254cf9e-5176-4649-b8f5-a6f61ead3cd6 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V4-01A-12D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 16e31f90e2805b6a8c798a7019d88609.bam 12541747358 16e31f90e2805b6a8c798a7019d88609 d2654162-b44c-41c9-953a-06f170583eab cdcef515-c2b9-4610-b0ce-1faaa82cc29a 778389ba-c2e9-47d4-b133-6f4d0e689b34 fe295fcf-e3d5-4121-8833-901dcec5294c VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MQ-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MQ-01A-11D-A14W-08.3.bam 10013724157 84db98cf8730495ee76528285b0d28b8 d279cb92-9848-44b5-89b1-377667a8b6e6 5091f550-7ae6-45c2-bceb-725cbf51852c eb59cf69-1997-41b9-bf69-69ad7da292a1 f5fc27d9-4949-43e9-b358-78cb69d87a3c C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2RC-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 627201cd597ef698d4b90ca7e3881bbf.bam 6636444151 627201cd597ef698d4b90ca7e3881bbf d27af2c2-626c-4cb0-9ab5-3cba1d25e4c2 fd67384e-9fac-44c1-879d-cddd500848ca ac0ae100-8072-47cc-81d9-8b52b1bf9236 0e8c70c9-1e73-4173-b82f-e5df1cae8bc2 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A6W2-06A-22D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TM Metastatic DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 75797cead322b9d7b6c248ca33914bb8.bam 5993639586 75797cead322b9d7b6c248ca33914bb8 d349c9ef-4649-4639-9cd4-a7472faea96e cc483fba-c11e-4ac3-bcc6-a350fc2f935e 929505f7-0270-475e-a9d6-00bf38dc78ba cb0ce562-7679-4843-9b4a-fb245280a45b HM 2014-04-02 2014-04-02 2016-01-04 Live 06 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HS-10B-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b44fc8559c35082f4f4baec804450e6c.bam 7124421209 b44fc8559c35082f4f4baec804450e6c d383f0ac-d805-4826-975f-3a0db4879699 c52c4f9c-9c53-4818-b05c-67a94be88e56 753ee373-fbcf-4349-b9b2-5a41936e27e9 241d9f57-d791-41b8-8450-62543149792b EA 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3Q0-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 07cdd313ef0bc1ae565a0afc0d2786a5.bam 6986805287 07cdd313ef0bc1ae565a0afc0d2786a5 d3b8bcb5-b3b2-49f9-acb4-7ef4d6b8779a bbc15cac-a3bb-4f25-beec-37c43caeeed1 20280122-a66a-4c83-8f25-0b9d97558dc2 3e3551f6-66dc-4f55-97c4-a7741e412cea JX 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A907-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build df7cef07b86e579463637b0994c5a8b6.bam 5447334308 df7cef07b86e579463637b0994c5a8b6 d405d413-062a-4139-9da6-2bc3fa1d8e6d 3e1d5fd0-73b5-4b18-991b-17e2e46ecf33 c92696ba-f549-480d-8d4a-5f23b27aa336 a1191820-1a2e-4a89-ac61-006d22b52d15 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA41-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3ca9caa610de513e2b0fd849369d5b14.bam 3698354721 3ca9caa610de513e2b0fd849369d5b14 d48601a0-79bf-49c2-8299-fd9b59e12125 3076d13b-25de-476b-9daf-b49fb396cacb 81658ce6-d4a9-4ee0-ae8f-cf2fa8485701 fa033cf0-6015-49c6-8b8a-045d88a21667 MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73O-10B-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4bd7e492e0ef55cbdf4f1e3f370709b7.bam 4557658517 4bd7e492e0ef55cbdf4f1e3f370709b7 d504cb39-4ee4-47da-a6be-23f995bfbe87 f2944d8a-e329-4e1b-aa51-3596ef6dd807 d0cbe668-5c95-4261-a1e8-cef55093a0f7 407e6344-7cd5-4739-9257-6d0e5b071b70 Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HD-01B-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 446f35445214dc5665bee94ca731faca.bam 13541423060 446f35445214dc5665bee94ca731faca d534bee4-59be-4552-8bd7-d30a26fbbdce c8d29518-a652-4a57-ae67-a1c223f02851 12427b02-6e3f-461c-b271-6ab230f628e7 56aa88c8-af6d-42be-8672-074476f6575a C5 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DR-A0ZL-01A-11D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DR-A0ZL-01A-11D-A10S-08.4.bam 16957118467 859fe3971893152ccbb01665e3faea25 d5a86e81-61bf-408d-bab7-27afaa3f2cbe 6e88a707-20f2-4cee-a1f4-21dd68ea49b8 36605f5f-245c-41e5-a9db-705373da7923 11a01213-e1c4-4f74-b9c8-736d3e68ee62 DR SRS206867 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A8ZZ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a870348ae4993ee504337ff33ef5270a.bam 5451028950 a870348ae4993ee504337ff33ef5270a d5bdc4c3-a183-46f1-ab2d-8ba947c057e5 5d99d6cf-e850-4bcc-850d-c1cf184cdee1 33bc6504-d9ab-4b64-a87c-012915f36644 9a0bd090-1c58-4a83-82a1-5c6c620752cd C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QC-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c14cefd81a01fbcb8754db41ab8c59de.bam 6312608654 c14cefd81a01fbcb8754db41ab8c59de d691a749-a39c-426d-8d71-c044541ae618 9c8f45a5-eb42-4a00-8e4d-5b9f1d1c73b1 cb695fdd-381e-4c00-836e-0ba27e32176b 6bcd780e-ff97-49fb-9084-287c61db05e5 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-PN-A8MA-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3faa92a4ac2ac9c95b698c74b3993c89.bam 7425543328 3faa92a4ac2ac9c95b698c74b3993c89 d6d5f2da-82bd-4ca6-b32e-8c25aa065532 8891492f-678a-4eca-9687-c35700ca0ad4 55add854-e63f-4335-bea9-23c3eb1e766a 681a4ab9-daed-498b-9bd2-7ab2ee04dc37 PN 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X5-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f26305515f90fe146395b63bab4c442f.bam 8455728014 f26305515f90fe146395b63bab4c442f d70efdf5-610d-4275-b58a-e6ed0349566f b9fd2816-d66c-4466-a14c-d5f74b38880f aed93a3a-7dcb-4ba9-84c0-bc735cbd545f 52ae8fbb-6130-4c9b-b484-e8e6401a46dc C5 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A20A-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A20A-10A-01D-A14W-08.3.bam 9991807017 cdada927b449417905ea8f0c6ab8600f d79c1a44-a6f3-4d7c-983b-3b6bc22a2ed0 76996ad8-2d20-4af4-88c2-67aad56b06a3 f40468de-3b86-4922-9951-f8ae28da6af0 4dfbc5e5-6bfc-4334-84c6-57cfb510c7bd BI 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-JW-A5VK-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bd9ab3bd1ed9d6956b21c55c5afcd6c3.bam 6494779528 bd9ab3bd1ed9d6956b21c55c5afcd6c3 d800a5b3-18a1-415e-be5a-535b9b4eee7e 9c42d657-7aff-46d2-a208-bca4a24027de bbb96b5a-80e8-4542-80b4-2444cf1fe51e 686b057c-0f8b-4123-836a-aacdb07f2883 JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DR-A0ZM-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DR-A0ZM-10A-01D-A10S-08.4.bam 16969520072 6d9990384f73535175091c8420efef07 d8a3f329-0711-4bf3-8072-ba32b873d051 c1ad28fe-984a-4158-aaaa-bdb09b70d86b 748aada0-448f-4523-9893-3d9618fdbe18 8fa13d7a-6089-4110-a4ec-b97a08e90222 DR SRS206882 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9UD-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 989fbb8c5efe92035c76d9762e820e63.bam 11050600465 989fbb8c5efe92035c76d9762e820e63 d9346d34-d4de-4465-9fbb-d20ced9701cf 5865a7c4-e80d-499d-af90-e56db3f42125 60cfa29f-4770-4ee4-aa37-787f53155662 0297296c-67da-430d-bb1d-6c21435e37c1 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8YT-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f3976f6b1380b1d497efd9de5cec5420.bam 6502360718 f3976f6b1380b1d497efd9de5cec5420 d9c6fb9a-f7f6-43ff-a80d-4a9c61c19758 7ed6d314-cdd3-4b96-96e8-6aab1d69c4dd cecaecb4-51ef-407d-a882-0e4b444b0a77 289e659b-b352-49e5-ae7c-02f5914e8876 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3EO-11A-13D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 597b79a03ebf31a137a5046210d336b6.bam 5794651532 597b79a03ebf31a137a5046210d336b6 d9df4edd-71c8-499d-b289-2e2552eb24bf 400d56d0-c2e8-4ab4-b22c-1b39bb7cdc61 b7f2958f-256e-4c30-9c61-11e76ddb36ba b4c02b0c-1abe-4c3f-be7c-5de397efac95 FU 2013-06-07 2013-06-07 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A952-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 689e64bb3e7c5d266846cf80ce3b45e9.bam 5932646558 689e64bb3e7c5d266846cf80ce3b45e9 da4385e0-a34d-4a61-9757-87db126f7f47 fbaf8030-0d3b-4d00-ac7a-502276d4e928 9fa42fe6-ccd0-4850-b08b-97b20eceb8df db8e6c68-cf0c-451a-a8c1-fb63a26592c2 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QR-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 222baeb6748a914f90e794a5ea925dde.bam 4745982276 222baeb6748a914f90e794a5ea925dde db65065a-45ab-47ed-8a8d-e1100323a92d acfd645f-fbea-48c0-a7bd-8fe0cdb63891 db44488e-4ed0-4082-bca0-bbfd22ff0537 4d0d6373-ee8f-4b79-badb-1f2121a98028 ZJ 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA42-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 440a02cbb3f902858469f8bae2f19ce7.bam 6542087941 440a02cbb3f902858469f8bae2f19ce7 db95d458-2fce-43e9-8bba-60b05c504793 165fa756-b3d5-49b6-ad00-07060d048e2d da5fcb99-16b4-4f9e-8602-d6a6192875ef a3b5bb67-e320-4bb0-b694-3eede4bab9e6 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DW-10B-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bf7a193e1e06c09f64df6a342d1c769a.bam 6569609798 bf7a193e1e06c09f64df6a342d1c769a dba29965-5b4e-4abf-81dd-92cf5e635741 0f908e54-7301-47ea-880f-95dbcded8f62 5dbd5436-696e-40fa-881b-c2386573ac68 ff1f9b5b-93ed-4eb0-81f0-ac9bf6db3767 Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CL-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4ce472f2e5dd51db52c5ac873d437e5c.bam 4858915321 4ce472f2e5dd51db52c5ac873d437e5c dc063f39-e064-4b91-b08b-cb7642c7305f 7f762575-e13b-4901-afd9-c1eb92ff718f bae2af5e-484a-44f7-ad6b-66137cdae300 695043a5-66da-4b86-8540-6aca605aec86 C5 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A5U2-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d04422483048b9012d4b819dc5547cc0.bam 3935338783 d04422483048b9012d4b819dc5547cc0 dc67299b-0d21-4e30-9799-01c2b1931611 2bc8a678-99d2-4051-8e89-d874215f5d2d 1ef20703-3684-4b43-a31f-892073208377 3dd3b3ad-a367-4d9c-984e-d306ee6b7a47 LP 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EK-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e6e7db6b111263ca6a72d414ae5140b7.bam 6198642892 e6e7db6b111263ca6a72d414ae5140b7 dcbc85ed-930b-49f6-b2b5-174cf790e4ed 4df9235b-29a4-436b-9af0-9e8a466fe559 d9c2ca21-f1a6-4cf4-be28-6c2492dd38e5 4dfaa93e-160e-48fb-ac84-9dd959e632b9 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73R-10B-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ac4aa0372d5f9165570ee3d8375a8a09.bam 5353557131 ac4aa0372d5f9165570ee3d8375a8a09 dcdfc4bd-bfb4-4d1d-8d23-f5f7dc5ba7f0 ba1d4010-a849-4c5f-a482-29e1898f03f5 d9b0ac5a-811d-4305-bb1c-a965bd389ce4 4217d0fe-7bff-4b06-ab31-b829be80cb8b Q1 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LA-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c622a3b68567452c3a59c9f2216781d6.bam 5869630667 c622a3b68567452c3a59c9f2216781d6 dd351b57-b2c7-43ee-b33d-d62a0b18fc1c ee0f12d6-333d-4e0b-8d4d-266025e9e71a 7b8c04d7-824d-493d-8f2c-9ed87a907192 d0ebb92c-01a5-4486-a39f-6c89187ac640 IR 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V4-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a709b03b1f8adaaab034d0e4be924088.bam 8140736056 a709b03b1f8adaaab034d0e4be924088 dd82bd07-fcda-4287-ba72-edabf228453c 94e6b1e2-b26d-4a7e-9926-1d350ddcebff 778389ba-c2e9-47d4-b133-6f4d0e689b34 64f7545e-ebf2-4d33-8260-34748f1a1c81 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R3-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3d48f81b1916704edf9dfebfec6ec03b.bam 6536162636 3d48f81b1916704edf9dfebfec6ec03b dd9960d4-9c35-41ac-97bd-96806f45d7ef 683d0637-fdc9-4afd-8338-bb1fdbcb5026 73aa428a-4288-45f8-8a53-cec173dcc61f 3671d7c8-af2d-44a8-a3b1-da74ad6ccda2 Q1 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PF-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 15d5856ca18b89468b32a24d25605235.bam 6035820663 15d5856ca18b89468b32a24d25605235 df525dd4-2336-436d-9847-cb9e0b291a46 34765b04-74bb-4a00-b9f6-52bb26ee8ad7 1451821e-dd49-41fa-a52e-32f8524ffe82 c0ace01f-ba75-4fcc-a95d-8ed9c24596a8 UC 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-XS-A8TJ-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1445e3f8dafbad4e47e724604a6381b5.bam 7637253575 1445e3f8dafbad4e47e724604a6381b5 df700910-90e6-4da8-85e2-d997a053d146 c44d96b7-db9b-4f3a-a605-81eb31e91b8f ffd8d31f-bc4b-4e19-bbaf-0e26e9f3a107 784c1b78-e1bc-4a01-b895-9cc6483436d1 XS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXA-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 63d32953d4588039facb9509a2ba6511.bam 5278730412 63d32953d4588039facb9509a2ba6511 df7ce603-e134-42b9-95dc-d41bb716e948 78a492e5-e6d0-409a-919b-ce987aea08e1 e8de2228-3aaa-48ad-a2e4-2940280af6fd 444cded8-685b-4f74-a8b2-9c4b5f777c1d ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73S-10B-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d2c82518d0e84695b9e28928abb0a488.bam 5829539293 d2c82518d0e84695b9e28928abb0a488 df86e69c-7a47-4c29-86af-0627c8685235 79c73ac7-f2c4-425f-b6b2-430a00a96436 b0f63819-fc86-4981-9d92-0115c6de3bce 49db603b-0d9b-4a8c-96e2-46e686aa1b88 Q1 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5FO-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1389f1043c22823675dfe622739dbc26.bam 4225414113 1389f1043c22823675dfe622739dbc26 df9385fc-29b0-40a2-8341-795b00ca0b47 37be35f5-6f57-49fb-be04-8d0cc014f4db ed17685c-b706-41e4-8a76-11cb0e6700cd 8065920e-db32-4553-8b72-9b4187a512e7 EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3QD-01A-32D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 735c8442b96981e5c38215beb5112080.bam 6604961744 735c8442b96981e5c38215beb5112080 e01fb3e9-5133-40e6-8d10-12bff5b68c37 af4a9109-60a7-4fb5-8ea3-b5251f608b3c 9e2e29e8-d94a-499f-a98a-5b53b2c38f3b 987e1913-a506-4a06-b247-9ff778ce552b EA 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A5U2-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ba9728cd5f86d96524d0aa02570c304f.bam 5256553628 ba9728cd5f86d96524d0aa02570c304f e0724289-c5a5-4901-bf06-f0e63f90f01f 74b18995-a18c-48d8-8838-669f3cb22935 1ef20703-3684-4b43-a31f-892073208377 cbdbe0d3-b3b3-4990-be3a-9af8360889d8 LP 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UO-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 27a25d2cc0afcda50893415e7b62a47a.bam 10091066653 27a25d2cc0afcda50893415e7b62a47a e1380ebd-75e3-4209-b48f-db38063cd45e 485385d6-17a5-4b33-8f26-ce832faac779 4da121da-9193-4ac5-8206-03cb1f7c2c14 729b1d94-980f-4c94-a154-64283241fff5 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8Q9-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2dd0f9c863dea57332240abc3151a308.bam 5955180623 2dd0f9c863dea57332240abc3151a308 e14081a2-3d45-427a-bf7e-1e06e150a93e 39d60425-160f-4823-8d71-f6939c49888f 5798d741-c198-4c14-bcc2-e3b17caf1be3 3413e317-f775-4ff5-9f77-25c244b32f44 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M8-01A-21D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M8-01A-21D-A13W-08.2.bam 17070047582 b913091f1b2764ceb7eea52e489b22e7 e16225ac-3b5d-4213-804c-0ac0f61059fb 24099828-5f1b-4004-b6ec-52eb184d7a54 110cd100-5730-4873-9fab-2ae6c8732062 72ff7605-0905-4829-8b54-b76b45fbb0df C5 SRS203089 2011-06-20 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A7UH-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7ee5a028a6bc0812b1b10aec200b57ac.bam 5870413681 7ee5a028a6bc0812b1b10aec200b57ac e1aa33e4-537a-478a-802e-7bfba8bac865 c0518dec-272d-459f-a57b-10a2a577dc1c 8328925e-3324-4188-85f1-6ffbf819d9e7 40997e45-d331-42e8-bc01-13ecb25e6e28 C5 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MP-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MP-10A-01D-A14W-08.3.bam 9552460332 3007eceb93dde89e031783101ac09d72 e21f46d2-6156-4b7e-a9ec-3002842ba20b 3bb2b2a1-d6a2-40a9-8193-897a3d03d771 08a52bcf-d2e9-497b-938a-4660c332e914 6a5e47c7-ae7d-49fa-8851-2c523b4a7d25 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-HM-A6W2-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 404b4b586a003e83d18d853fa1640a88.bam 6271280863 404b4b586a003e83d18d853fa1640a88 e2ce477f-18f9-46f5-9298-cfa7ef5d023d cd89b294-bf23-495d-a809-4ba324acc1ec 929505f7-0270-475e-a9d6-00bf38dc78ba 69b47bce-f0d3-4a27-bfb1-56e66cd23438 HM 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-WL-A834-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9aa55b9f2bc7df4bd90e65e89f689804.bam 5565347149 9aa55b9f2bc7df4bd90e65e89f689804 e33b6fed-8d1e-4ff5-896e-8b83428ed653 bcbc833b-04a1-4bf0-af6c-57b5f0b15f69 48d81b1e-cd75-4b55-a0b2-c331be2a88ae 75af3364-fa0a-4c85-9017-b9c1ae1a5f08 WL 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LB-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7856516267498d867f20f90f0c989e57.bam 6081742776 7856516267498d867f20f90f0c989e57 e44aac93-17a9-4e6c-b7af-4f9986ef44f6 44a3f604-288d-419f-b3fe-cf02924d7cbe e7c7783c-1d0f-4f42-a4cf-518825e91d91 ba226de0-7a7c-42dc-84a4-10c0cf798244 IR 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A40J-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b61eb914faa707ccc5cc38bf8e2eb640.bam 6579958604 b61eb914faa707ccc5cc38bf8e2eb640 e4fcacf4-5637-4a73-a365-5ff2af6fb26b 22622949-a302-41a5-be56-040320a61c74 63dcfa32-c69e-45ad-bea3-ae672acb11c6 a18a106c-712f-4161-9227-a0659d23d648 FU 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A4S6-11A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fd584bf340cab66b37bd6a929d7109ca.bam 5291332215 fd584bf340cab66b37bd6a929d7109ca e595b33f-0f92-4770-8763-61aa7ff2f2e6 470f47b6-2e32-463a-b412-ddc7b611704d 6bcf8b41-7abc-4b6f-899a-1f67b4ada765 bc537528-2802-428c-844d-3dbe1fa7041f HM 2013-08-21 2013-08-21 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A23K-01A-11D-A16O-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-FU-A23K-01A-11D-A16O-08.2.bam 11972111057 b3be9ca61460134adeafa4cc1a12f8b2 e5a342fe-3f01-42ad-a3a5-1038ade6fb27 6b6c8c42-616c-4135-82db-91575d2dda1d 85abfd69-cf72-43f6-a7dd-97056f22c91b 7fe455c5-b312-4f45-be86-294262e0ae7a FU 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-HM-A3JK-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b389abd83108a1501a7ad3b88b524a93.bam 6115521063 b389abd83108a1501a7ad3b88b524a93 e5af9a51-96d0-4a5e-93c1-c16317c04932 a6f880ce-99d3-4975-a271-5cae1c433e76 7c4cd55f-750e-4941-a9f3-0632a75d6531 113328e5-1a07-45f9-97c0-dec4c28b14db HM 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-AAVH-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cda834e0bf5c533ee207c6089dddd466.bam 6780940821 cda834e0bf5c533ee207c6089dddd466 e665334a-7838-49d1-b995-c5b969f253bb 5c241056-95b9-4681-8d19-d9455cc02a68 1c0b5c18-8760-4483-a88c-1d1d89f61998 760f36ef-fc23-42f5-bdb2-b0e951ebbb02 JW 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U7-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 484b1dfd2bcd74a0039e82c5ee6bbe8f.bam 7090731055 484b1dfd2bcd74a0039e82c5ee6bbe8f e6b64dd3-39b8-4e61-a278-0851e489ac85 04651f10-a056-4f49-9726-28b18c95f826 6d01421e-d533-4967-8422-97fbc0fb0895 e56a6902-4a2d-4768-b030-afa41212646a VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UC-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fb349983834f4508d8e9e68e9a5da162.bam 8623494165 fb349983834f4508d8e9e68e9a5da162 e6ea97eb-c21c-43b6-80f5-202e3aa5c6eb b2ce1700-7cd5-4221-a3d0-526f2c9f2717 cca23650-1b06-4977-91e8-f35e73e70c48 74690165-e790-4c44-8c32-49fdc0626ce4 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M5-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M5-01A-11D-A13W-08.2.bam 16182800382 42be16150d533012b9d9d25ad4dfe440 e7765c51-1536-4e06-9c18-0b7d0dcba291 90369746-5572-4f29-9852-1663cbc0179d 0fec73a1-8d3a-495b-8008-c52f190f4270 2091ea13-7864-462a-8e96-c59e50ede1c0 C5 SRS203062 2011-06-20 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2PK-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4ba0efd7e71851bf2cd0060a36895a41.bam 5787251190 4ba0efd7e71851bf2cd0060a36895a41 e775ecd9-5104-40c4-81e1-6b68658cb58d b3b3a27c-ee9a-42af-a6d1-9af5970a98b9 0809ba8b-4ab6-4f43-934c-c1ccbc014a7e 5f613800-55df-497f-a544-5b12cb9446ce EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3W-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 21bb4c5378434369ef2cc321652c141e.bam 6407530338 21bb4c5378434369ef2cc321652c141e e809849f-6f83-43a9-9a8a-1792a176216e 1e9ac611-9e4e-46e3-9c69-9fe87a38ecf3 fc2bce29-4685-49f5-b901-2117bf673bb8 948efcc7-118b-44db-a522-c458488c0fa1 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MP-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MP-01A-11D-A14W-08.3.bam 9452156718 c95f34dd547bc71f01223e755ae589ab e870297b-1b44-495c-9b30-2bf24578ff28 6abb7bd4-a5e6-42e6-9fb3-c65b8abf8d3d 08a52bcf-d2e9-497b-938a-4660c332e914 73ff6bac-f086-4cf5-a5cb-c3b4a8d28e55 C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A94X-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f29994b324b2e89e34cf340092698857.bam 8020697559 f29994b324b2e89e34cf340092698857 e98c9249-e9b6-4a62-8dc3-68ac2940a47e 461234c9-fc98-432b-a0f3-c32bf9ecee4d 240ef385-decc-48f7-a798-a81b4ab0410e b3edbb18-0b82-4a64-9b5a-6ef83590317b VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PG-11C-11D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f85e573ff3cc90bef979efe983675199.bam 7283197027 f85e573ff3cc90bef979efe983675199 e9f940d5-e2c3-404a-bc1e-8f32dd8a5312 51a5f0ff-c933-43d0-9b32-3a603fd09253 53d99a89-6ebd-4637-91db-7ce43ebc6b8b 8b52ee44-e43b-45fa-a978-ea4fe9068a67 UC 2014-11-27 2014-11-26 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WI-01A-12D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4911f64fb4e718be1d336c3bc17c1493.bam 7629822982 4911f64fb4e718be1d336c3bc17c1493 eaad4fbb-5100-4db6-9e16-4e5b32b43176 4167b53e-960b-412e-b556-4fe236a9c990 c14468eb-e725-4029-96cc-75bb9ebd9def 062963b0-87d9-4d01-907f-ce9eaa7bf1c5 DS 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-2W-A8YY-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 191e1f11c562128d1f2afb31f50e73b5.bam 5626533436 191e1f11c562128d1f2afb31f50e73b5 ec3ad992-1cde-40d9-9eb6-416fe585a943 cb555188-fed4-40d8-8329-aa8ba7a57b7e 5aeac31a-176a-4f93-a376-a93a670821bb c9afd150-ea3a-4219-b634-6e097c3b2a4f 2W 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MN-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MN-01A-11D-A14W-08.3.bam 9189001011 be5b66a908ff0a6847cd4ef94ad19715 ec842b9c-7f0a-4fe9-a8fb-650dc615e432 a31ce2af-48b0-4a05-b99a-79ae57d8ba6c 287ce10e-31c8-4b10-9858-6e45451dfbe4 6bad5bce-c734-47eb-85f0-d804022578ce C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-XS-A8TJ-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2255afd0f1759900f06adc57acd1af89.bam 6242238877 2255afd0f1759900f06adc57acd1af89 ed72a242-908d-4ef0-953e-92c61f84cf39 0b5fe505-d056-4242-b8ae-7aa0a7b0e540 ffd8d31f-bc4b-4e19-bbaf-0e26e9f3a107 e28c0e2e-da46-47eb-ae54-494fdf22dc69 XS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WF-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2752f06c95b554db7f4e2fcf28c65356.bam 6900088947 2752f06c95b554db7f4e2fcf28c65356 ed85014b-4e19-4082-a77c-a7637ea859cf 06845338-4ebd-46d8-8392-097e6b77dfde d02ffaa9-0403-4a89-be01-cce35c80dd69 2d83b77b-9140-4554-a436-e43c1f36dc98 DS 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A69B-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 83303a3a47422e828ffc09c4b31e958f.bam 4608687555 83303a3a47422e828ffc09c4b31e958f ee06a945-c892-4226-a076-05a0c4e50738 8f6180ec-2423-415c-ab25-7a8ee6ac5176 fb4af6b2-4bed-4dbe-9309-29f59ed30fb2 bdcffdb1-2753-4211-adc2-57a0cb363ca3 JW 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BQ-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cd0863a1de575e604a74ca1bb4f5a149.bam 12126086087 cd0863a1de575e604a74ca1bb4f5a149 ee0f9972-b350-40f0-9551-7839ab18bf3e 1fb15f75-d4fd-40f5-8fd1-3169149fbf40 e77c3f70-08d1-40d3-b038-f09a519423cc 5e2f8194-f97f-4afe-b68d-6af81a516288 C5 2013-06-08 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A1H5-01A-31D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-EX-A1H5-01A-31D-A13W-08.2.bam 18480272575 92dd2be902f217becf02f4c69cc7be66 ee1a8473-ac67-4277-a3c8-b2c289e87add 679411e8-ac8e-4d12-b15d-a2a3fac880c8 6b74c07a-9932-4a80-8296-9db08d0c6964 85452b47-1cdd-42fd-8802-0fd2e6f51a4d EX SRS208628 2011-06-22 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-IR-A3LH-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1af85774628e02866e3365f36c8cda8f.bam 4666872521 1af85774628e02866e3365f36c8cda8f ee296ac2-58e7-44a2-b014-43aaca250fc4 f578da11-7920-4c6b-90b0-e1e88da344f9 f24ed9c0-92bb-4003-86d2-42ab26617a05 603dd19a-bbc4-4442-879c-f012c469f83b IR 2013-08-16 2013-08-16 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3L7-01A-21D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ac72d0e13177a0c5abb516baa3e40c1c.bam 3791834469 ac72d0e13177a0c5abb516baa3e40c1c ee3794d2-6be2-4265-9bda-2051272ee096 3ae4ff71-2436-454a-bd10-33c454f966ef 66229dd6-c771-4455-a90c-c66fb40cf7fe f571523c-758c-4f34-a44b-f8e6a3eebe0f IR 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MF-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MF-10A-01D-A13W-08.2.bam 18947348086 fd6cfab69cc338d862407db394ab0d6b ef942161-34e6-438d-afb3-68660c94fb50 2246aadd-79f9-4671-8a35-621949e4b23e 4f514ed4-3be6-44bc-a531-210027846459 6ba81700-3259-45be-9265-991cbef21970 C5 SRS203122 2011-06-21 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXI-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 858ac937d016c8ca54ea2098d6eeca5c.bam 6136645102 858ac937d016c8ca54ea2098d6eeca5c efb71050-f79b-478d-bfe9-fdf334c60688 0c63896b-3b48-42a1-85a8-f2a3401c0944 40a86987-e77f-4977-92b1-8217796e1938 6748a073-7a01-44ca-9f9c-fb69b157ace0 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HR-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dd44d253e61da96546b7c66ba228dc78.bam 7816751995 dd44d253e61da96546b7c66ba228dc78 efb2aa67-4872-42ef-84e4-789f37a7d073 4a771746-0d20-4e77-ba67-a235b9e28d7a 638035f6-2909-4a44-980f-468ac5d74e18 1fbfa952-f272-4531-9f9d-1b8bd1dd0845 EA 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A6QX-01A-12D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 88f8212f59e3298c9ab41f74b53f3b0d.bam 6641961672 88f8212f59e3298c9ab41f74b53f3b0d f02f9c5b-56e1-48e0-8ccf-59d5eba721d4 676d4bc5-80c2-4db8-94b1-3dea2aed054a a300db40-e0b8-4c45-abbd-d7aa06211e9c 1387de0a-aa60-4075-8673-fa3eb9ac45de EA 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A5QV-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ce3c8d1b3d80530ed573d49d7de6c8cd.bam 5276923878 ce3c8d1b3d80530ed573d49d7de6c8cd f0a7729e-8915-4f80-a79a-18f13c4a0a2e 2d5c7dac-d0d8-4618-96cf-993ef74fc7e9 acf5cbf3-09ca-4f4d-a44e-1792613190fc d37bd344-fe23-4342-b8cb-744f8dea3039 JX 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HE-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ddd53911c08a307fa870c96891b37e21.bam 7943168393 ddd53911c08a307fa870c96891b37e21 f0afbef0-5c9e-4ab6-a7c5-32c6de69a827 a6eaeac8-9943-4ea1-b40b-ccf53e8544b0 bc63dd2a-b8f6-4b30-a8d7-ce193bcd17f1 58e4b79d-744e-45fe-9836-91d2b2e2c19e C5 2014-05-30 2014-05-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A958-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 208bf9b22a4894c5409cae10620e66a3.bam 7890084361 208bf9b22a4894c5409cae10620e66a3 f1198872-2bfb-413a-b9a2-40ac150b9155 66e3e678-28f2-4ac7-8ade-23ddc203013e 97cf3268-9756-4659-9e98-f200f96a91f4 88e101ba-004f-4d11-8463-ada5df909df0 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA43-10A-01D-A45U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e560ad7bf7fade2ebeea4949836a77e3.bam 14414403148 e560ad7bf7fade2ebeea4949836a77e3 f11daa59-66b8-4d14-94eb-aa32d2e06715 29d5b6c4-9a2a-45da-9bde-cf8410f4f574 ed74703a-6838-4f4e-9524-d6fb7b208687 a8b9e6f9-ecdb-481f-8b2a-9272a532c20d MA 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7XC-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 10dcd5022490ba2d3173e706ca6b1db3.bam 5681352667 10dcd5022490ba2d3173e706ca6b1db3 f1d67084-0d3b-44b6-8fd9-e3016510ba8a e69a17ca-8681-4537-9239-f56b6383494a dedfd5fb-3c72-40f9-a7ef-52c2176bf662 10b91fa6-0b02-4108-be64-0e32d3de736b C5 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A0VS-01A-11D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A0VS-01A-11D-A10S-08.4.bam 15646886980 6d99c02db7283f84c10beb78c483bf26 f2c931b0-bfe4-409c-b0f0-c5f09a568493 cfd08e6d-ca7c-47ed-a7b1-b9affdaf1190 3923a64a-f8d7-4e3e-9218-cee642da21db 878cf960-b1a7-427d-bf5c-31f145be4501 BI SRS202291 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-RA-A741-10B-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 25e663782e211092c289582944218f7b.bam 5874551379 25e663782e211092c289582944218f7b f38643ef-d41c-4efc-b8bd-acc522ac19d3 24106164-fe83-4734-ada3-bc3f28c07452 bdad2f13-ede2-4aad-91a4-bf60f8888bf2 c44b1b40-1a10-43c4-b0b8-d3c26108cab3 RA 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXU-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 42fd02c2d4cc7ed8eb1a55844d3c009c.bam 8748913444 42fd02c2d4cc7ed8eb1a55844d3c009c f3ac1baf-682f-4f8c-8952-8bd822144271 5a4496fb-ce51-4bb1-8b68-ea175270d040 ddd4b6d2-5be0-4edd-977a-a795eea3c738 fd8c46b4-623f-49b6-a413-094bc9cdb053 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UZ-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 907ad9c26b518684af841fc3d3e1d2d1.bam 7151501289 907ad9c26b518684af841fc3d3e1d2d1 f438922e-651b-40b1-84d6-d0a2c9969cf2 85dcd532-43ff-4585-8a2c-98a7b5e65f15 6817bb3e-1f8a-457c-9ab0-31ccda8b6868 6176b25a-1ab2-4526-a15f-1883585a4d1a VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BE-01A-21D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3379d20228854c21eafc42fe9bc05dfc.bam 6561493691 3379d20228854c21eafc42fe9bc05dfc f4b6ad56-d2ea-43a3-8a19-573c3c98608b d7c777ea-be05-4bca-966a-479f3d3b0461 f8ab17ec-c365-41a6-a4bc-36653e84bce5 4b0d9159-61fd-44d9-a18b-d0d03def61e1 MY 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A905-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8883274c325b7009ee6d3ba70c59024b.bam 6452938293 8883274c325b7009ee6d3ba70c59024b f57ccfe9-46f3-415b-879a-13034b4e3d14 0d8f568b-e23e-4748-9ea5-4d362e7dfcc7 c99f476b-e8b1-4cdd-9164-0da450064886 ae60de0b-6db7-4fb1-a335-e4e7babd251b C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AU-01A-32D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 13d92ef76d5e23806b6781720a6c7703.bam 7026897743 13d92ef76d5e23806b6781720a6c7703 f667fa64-ec60-4a31-8666-b900bcb0872a 8a53198f-ee29-4cca-8cb2-9944790bcc53 e15d92a1-6925-4b58-a494-d6f665f67b83 0eeab2b9-8e74-4d25-841f-38634d580a69 LP 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QM-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build da4e5c13c2f057576dc8f1767ba08f65.bam 5426181680 da4e5c13c2f057576dc8f1767ba08f65 f66532bb-0877-4939-8ccd-974e7630a715 b0eff242-23ee-4a21-9103-5ba094add9a0 27d2b645-f1bf-4486-b0b5-273681b58625 9b5595f3-61e0-4d0a-b9a2-cce5dac511cb VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VL-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VL-10A-01D-A10S-08.4.bam 16193364253 71c2b9e7f3dabee590bf7aff7f8661df f6b58a39-72ed-4821-99f0-49344cb76a18 c1a153fd-d788-4e0f-b1a8-a3052a0f60b6 dfd30f94-19e3-4838-95df-14a3763419af a2c63996-6951-47b8-bbb5-a04c8a66eeec DS SRS206900 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXB-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a50a491e515b5076a9f80d3b21a6db66.bam 6139689834 a50a491e515b5076a9f80d3b21a6db66 f75aee14-b65a-4e96-9c16-81dfbd48ab85 938ec402-fe08-46ad-a1e2-d488664996b3 88f0aa4a-6bfd-4573-b136-58f84f867f10 55d39f5a-606d-4343-b34d-6b5d152bfde8 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XJ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e6a413a2f618b70e20e4c59d5f2dba24.bam 4959538710 e6a413a2f618b70e20e4c59d5f2dba24 f846870e-cb55-4676-92dd-8442c89d556d fb55073b-ef99-4146-8c25-c0596a8e1512 e89d0cb1-6ec2-43ee-a6d9-b922b680af34 17e11d4a-17c9-4f67-b1c6-bb715bd79859 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73P-10B-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3ff91619f3ab42c2a0747848dfe22d97.bam 7125346122 3ff91619f3ab42c2a0747848dfe22d97 f8c63ea6-d21e-49f3-a3bc-68d38018d1da 53421a70-b8ac-4854-80bd-9cb42930b9fc 3a3a9b5e-12a1-41f5-a54c-d4c1e0eccb9e 1fdf8dc3-43e9-4f29-98d0-ff848684aa1a Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XH-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2d4b4e590f0423cda9c91ca7440f72ec.bam 5202561026 2d4b4e590f0423cda9c91ca7440f72ec f8de499b-ce32-43c2-b095-9c3bea5eb8e0 8d19bf65-2077-4bc5-969a-6ef0c03f0bb1 183e8d87-3476-46bc-a989-ed4b09809227 009db85b-200f-4b6c-a5aa-330f9eba2ae1 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AW-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 133fd8ca02175352839cbfe8b235d784.bam 8772623901 133fd8ca02175352839cbfe8b235d784 f92cd732-3fd5-46a8-af03-ca5362954d6c 42a70aaa-1ae4-4a80-bb04-d0bf0ed8cf2d 74e47ded-2c00-4455-aaa6-cd662dfbf05e 5bdc56a0-0690-484e-b4bd-2f7ff96277ae LP 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-RA-A741-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a39451b33caa9be5e5efd47b2370cd17.bam 6385826557 a39451b33caa9be5e5efd47b2370cd17 f948e718-d6ce-471d-926f-039394ef09e9 adc6fd47-b5a4-4db3-8431-0f1f6ec4b808 bdad2f13-ede2-4aad-91a4-bf60f8888bf2 84ca6bcf-2a51-44d4-9c5f-1edaf9a076af RA 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXN-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 959ec19fda99e3acca44f2da66b3bbc6.bam 8042935954 959ec19fda99e3acca44f2da66b3bbc6 f95b8673-3f5c-4e50-82cf-c232243a0354 d9ce3d76-6b22-47ad-acb1-13d1e4c1a40a 5f22e050-c172-4f2d-a1f9-6cb749b6ef98 019e7aee-73c9-4330-b4d0-493a97d654b0 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BF-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cc2993e90031bc524da2f058c80eefd2.bam 8008022829 cc2993e90031bc524da2f058c80eefd2 f9a61000-2550-4079-95c8-4977609b15e9 aa95dabb-5ce6-4379-a7be-300ceaedbd5c 4f4e8834-a716-42e6-bd51-60d80a619202 73a23ceb-31f6-46b5-8007-8462f17e2780 MY 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A44S-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 98ee25a23829991cc88d6fce190f77b4.bam 7343118569 98ee25a23829991cc88d6fce190f77b4 f9e0f8e6-2547-4769-85a2-3765b9b4657b f918a9be-5c0e-413b-8a6e-c307e8b2ca48 cfb61fd8-0bca-40b4-878c-cc914a289792 110b220d-ed23-483d-9f5a-eb6401bc78e7 EA 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BI-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BI-10A-01D-A13W-08.2.bam 18168435376 86eebb34faec93ba9960f47fc26aa739 fa117bad-661c-44af-a400-400f11ca8ed8 c8af942e-74f7-4d67-975b-0b14f9ab768b 91310434-2a99-4e1d-81e6-3d58d097089f 958b7684-0abd-4f94-8c2d-f530690d9952 C5 SRS203023 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A43B-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2941b4f72787329c8b9f57fa5453d92b.bam 6268216074 2941b4f72787329c8b9f57fa5453d92b fa2625b3-1f97-4f46-8030-b005985feaa3 cbc3126b-456f-4b3a-8364-7c42eb48d5a4 3265f9c1-7242-4c7d-b4ad-b6519ee94f84 7895cace-838b-4d99-bc76-920f0244da8b EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A97N-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e0f83d1e104b1debc91cc201b2f26990.bam 6237438243 e0f83d1e104b1debc91cc201b2f26990 fa481ec8-7277-49c1-a245-c605b74125d5 c6e17fc5-27df-4f47-b7e4-e09df3a8ae54 87e701ab-acfd-45f2-a12e-323c94e5f3d5 19e858be-3211-4f2e-a25f-0f44868bdb2f EA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A5YI-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 93ce7fa24fe1703c2370cb5337e8e4eb.bam 5050347555 93ce7fa24fe1703c2370cb5337e8e4eb fa78f5a2-c806-44d6-bb9f-5a7bf1dbfed2 cb846086-f95a-42e7-b182-0841596aafe2 5e972e96-7271-439a-905c-6e308c1ef29e 2f247fcf-363e-4d72-97f7-68765989ff05 MU 2014-05-30 2014-05-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A2QG-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1706f775b6ddf909be9892c6a9889057.bam 7566378835 1706f775b6ddf909be9892c6a9889057 faa7c38b-90cf-41a8-b9d9-b29e79f9538c 581bfb7a-017b-4f4e-aa60-effcc1fefa0e d5d8a818-d689-4c6f-96b0-13f2cb10c3ca 81ae8e2d-e42e-4249-8490-2f36610351cb FU 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AX-01A-12D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2244dde449365764eaab3c445d5be9e5.bam 6412263348 2244dde449365764eaab3c445d5be9e5 fa9f2720-a9bc-40b0-9db9-fb65d2e2f2ad c2dd5816-3dfb-4ad9-b3ca-a619cf70fb23 3223fec6-1d35-419a-8ee9-7c5885b8be1e 067a2e35-52e4-42e2-9c22-db555589c0cf LP 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UT-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9ba743337011b6dfca32fc8fa04b9c7d.bam 6313469834 9ba743337011b6dfca32fc8fa04b9c7d fb2d6086-4831-4e7a-a39f-c55deab3a519 fb5a7746-9376-4d22-a143-62301ec0e04a a945fd96-ffb3-4787-bacd-60da4560c8a5 183ebf1d-1211-41e1-b592-cd4f776d4e3e VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3TQ-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d763d6a27e01993590abc524cf4a20b8.bam 7239432519 d763d6a27e01993590abc524cf4a20b8 fb4b9024-9259-4b02-b506-d6d03fc88fd8 f3d51719-25b7-4d5c-807b-89baeb60773b 7218aa6f-3345-484f-a329-a3b6169a67c7 2f3bffb4-2c85-4b72-9af5-4db9dc358ae6 FU 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HL-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5a268333469aa8350df3ad108b4df9c1.bam 14457792188 5a268333469aa8350df3ad108b4df9c1 fb869423-dd97-4955-9115-f41af5dbec74 43a31144-5227-4461-b012-a2080346c704 09329a53-d58d-4480-95d8-32043e40de6e 794bb890-8431-4860-a6d9-b310918e0b1d C5 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QC-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 56f39672c072c2ff2b05d63e46085a9f.bam 5464172798 56f39672c072c2ff2b05d63e46085a9f fc6354f6-0f82-4370-82ab-9e659d7acdb4 4afc70ae-0603-4629-a162-114b0536987c cb695fdd-381e-4c00-836e-0ba27e32176b 047b9b65-ae3a-47a9-9cd5-3bbe05471c8f VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BF-11A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1ae5f01d2e3654db2943b0979cb37841.bam 6215493961 1ae5f01d2e3654db2943b0979cb37841 fca7f3e4-82d3-4049-a1ba-3da5fba763d1 1752ddf4-5edf-4d0d-939b-f05bd37ea865 4f4e8834-a716-42e6-bd51-60d80a619202 25a7f991-7dc2-4d3f-ac77-7676dd071977 MY 2013-08-21 2013-08-21 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3Y4-01A-51D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4d04a789ce50c2c180748a053367dd4f.bam 6899959249 4d04a789ce50c2c180748a053367dd4f fe24dc03-f82e-45e5-88b3-e506965a6b6e 22c5a391-cf06-4a8c-9a14-c3663eec3a5f 3ac62513-b5f4-4063-aabd-dad08a1f56fb ff97c148-76ba-480e-9456-5dd7d7238373 EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3HY-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 620ece8c058fcf4ca7c29782f17638b8.bam 6787756555 620ece8c058fcf4ca7c29782f17638b8 fe5577a8-07c5-4c2b-8b1e-e2e76995e3b6 d940ce39-b17e-4275-baf2-7e6253bb92db 674e010c-7ad4-4dc2-86b0-284cd4560633 cc602955-fcec-4357-8b7c-31111cde9a74 FU 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3QE-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9d36fbe37f66c4a1d70c2bccbb5e4da7.bam 5725764333 9d36fbe37f66c4a1d70c2bccbb5e4da7 fe65cee0-520c-4a80-944d-41664c9cf1eb 3c8c024c-0290-44ab-8858-977dc83be80a a4e444b5-bbca-4ef0-b92f-908d608cbb91 1ab52cdc-8a5c-4f21-aec9-f4be1691c1ce EA 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DV-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ea1a7c3daa0c90c45f6bff3a7a4a458a.bam 5044585295 ea1a7c3daa0c90c45f6bff3a7a4a458a fe8ae971-6f65-4d83-bd0a-db6ebd2b1e6b 6bb8b840-0027-4610-b4c8-2c79aeb77c26 c80f777e-d150-40f3-9fa9-02ef9a6d7692 08760962-2b08-404d-9670-e0b4c5ae9370 Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UU-10B-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 652cae00579a5e423ed28a481625458e.bam 8167636412 652cae00579a5e423ed28a481625458e fea898c6-267b-4562-a26d-c11fec4badad 54ea37e9-fbbf-4eba-ab5b-6686d03ce2b5 4770ec81-9174-4d2a-af54-70c00696fb0b b8e5bf3f-25ff-458d-b3ee-3ca250af047c VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A954-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4162cc523ca207b8dea4500d8fa12085.bam 4334620988 4162cc523ca207b8dea4500d8fa12085 ffefedc0-126f-4f12-a5e1-58208a3d2a8e 67eb9e36-8aa7-4a10-a2ae-0a327b2961fc 9ba72a77-aef0-4788-8072-60c28902e55d 889e4fb2-6cda-4b02-99b8-e2ca03ff01da VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A5XV-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 11284dc9416d5bace3b97c2a9d88cb0a.bam 4204410920 11284dc9416d5bace3b97c2a9d88cb0a 0032855e-1c17-4598-bcf1-22eae51fb039 9c23cb7c-3414-47a2-85ab-896140b04a43 9dba5a81-3587-4f5a-8d19-e0b0aed0a677 0508cc06-1d8a-466c-9133-7b024e309a73 FU 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R9-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b471a0d1d27812d3818aafbd52f833d6.bam 6420824783 b471a0d1d27812d3818aafbd52f833d6 008d4e80-859b-4e7d-b405-620a2d768576 8a08173e-ca6f-4dc1-8ee7-aee63ef61d7c 00ad0ffe-2105-4829-a495-1c2aceb5bb31 996ad494-90b1-4ac7-9339-dd4acf5af472 EK 2012-11-09 2012-11-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MI-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MI-10A-01D-A14W-08.3.bam 9308596556 118fc92453712ef1d53e854c53085bc1 01ad63b6-8b88-419c-a068-04a0e8073498 a3d0503b-baac-4f83-9182-be7b4154c61d 941f75a1-fea4-4539-ba69-60bb11608f6d b9b8f225-df87-48bd-bb39-e049f8bb2c0f C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A3GJ-01A-21D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 589ef632efd56a3eb8bd671a8fd995d6.bam 4690378439 589ef632efd56a3eb8bd671a8fd995d6 01a6c2f9-c779-455e-bd9c-d59e33f88cf0 eeec3f16-0e6d-409f-91cb-732488e46db1 deda68dd-e9ad-45cc-9dbb-1c5836ef6519 93ab0265-4851-4a8e-bee3-496ea8de56f7 EK 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CH-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3a4780910e6b0fba7d8a783c63b0d3af.bam 6348401610 3a4780910e6b0fba7d8a783c63b0d3af 0205bedd-1f3f-4256-8421-2d7e24cc2460 7099c2b8-72df-4118-9950-72799ab04f3e d626a732-af64-4dec-b4bf-3cb761bf4c8d fbf7856e-6330-4033-8b33-d06fc2b99108 C5 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BE-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BE-10A-01D-A13W-08.2.bam 17768553436 bffae51c15c23bfaa3878ccbf9d64b1e 02214aa8-ca55-4d45-a0f6-b515c8dd4612 7d05a76b-1885-47d5-a8b3-08b2a1b401b4 2b6d2c15-8bcc-41ab-84d6-601442f4378b f87d9890-19a7-4a67-a4ba-159047e11c1e C5 SRS203005 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXD-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dfd77523601fa8e3f43635b592d2ccfe.bam 5896896178 dfd77523601fa8e3f43635b592d2ccfe 02313ef5-46bc-4c7b-b79d-b23146ff76d5 e79282c4-19d0-4395-8072-a5fa6f78e04a af33df2e-9737-4f63-952c-858a70aa589c 19e2597d-f575-4fe1-bb27-28406184fe64 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LC-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build db9bb0507d7839e9def3a34bbefaa6e3.bam 5195727442 db9bb0507d7839e9def3a34bbefaa6e3 02bb1d50-ed84-4828-bca5-2bda10c40828 0ae152f3-8825-4ebc-ba32-d491560a8bf4 58bdcace-0047-456e-a225-68953edafe5e ac6d15a0-67cf-42aa-97dc-ba50d0e9f409 IR 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UE-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8389d504bf7c5afc147fee8adbc5c875.bam 6615189818 8389d504bf7c5afc147fee8adbc5c875 02fbb873-d466-4ec7-9279-1c99829c4522 89a68ab1-97ef-4177-aa15-ad90f387109b da30a845-c4d3-4c78-b8b0-210239224f8f 48ecab30-cf47-43a8-af5c-026140a53ef8 C5 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A20A-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A20A-01A-11D-A14W-08.3.bam 8628459222 949d054e039c002d4ddc0f3d5bbd99ff 03b8de54-9e8e-424b-8f1b-540bda5cb90d 26397cf7-5149-4147-8d13-1083d5ccf9f0 f40468de-3b86-4922-9951-f8ae28da6af0 73bb25ec-bf67-4a93-a159-a4b34e7534de BI 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9UP-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b9104e9635b37058a5e1997a2fa6eb7b.bam 7254395132 b9104e9635b37058a5e1997a2fa6eb7b 03bfc668-1e92-4dfe-8cd7-5ddb4e1f03f5 ff9e7ce0-e9f8-4396-ab13-21d7d06dbc8e f0cfaacc-30e5-4e54-b33a-f0fd5dad620e 9cd99f4d-69a5-4685-8720-0484d14f8c6c VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LI-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8dc5fa617f8e5a909936cd355458e5aa.bam 5690961542 8dc5fa617f8e5a909936cd355458e5aa 041960e5-151e-4445-a512-6b19b95387a9 0f741066-3dc3-42b9-8287-28b5e5aade9a 75bc22d8-738d-45f8-b6c0-c664f5fef47c ebfa4682-49c9-4ac1-8147-e3860d852d28 IR 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AV-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 25e5a97bad47b1865496303680191c42.bam 4131825777 25e5a97bad47b1865496303680191c42 050992c7-a47a-4c80-8591-2ae40fc3b78f 4de35b22-a7e2-46e2-a2e3-f28e55834986 f241d6b1-2c32-4478-8f8d-8c746464f7d1 522e7c48-5f2c-4fc3-9f3e-23a4347ec4b9 LP 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UL-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0cf3da1d0cbb57f15e263e5bf90b7566.bam 5000150537 0cf3da1d0cbb57f15e263e5bf90b7566 05223772-fb32-4af3-8c56-e3f2e4395068 7bd7fc86-2ad0-4072-9b46-12d149f7c6a6 7abaca8f-962e-4f9d-b63f-26c131bf5961 e57d6c1a-8ad6-457c-b56b-ce989b356101 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A0VS-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A0VS-10A-01D-A10S-08.4.bam 16713287201 9d4e36e9ddc450e6b45c6d5dc9ee65ab 053df050-247a-452d-85bd-abd9c7427aca cc7fbc59-ea41-4bf9-931a-a84da881e22c 3923a64a-f8d7-4e3e-9218-cee642da21db 2fbddd03-e9f3-4d01-b6ff-7154716930da BI SRS202297 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1MI-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MI-01A-11D-A14W-08.3.bam 9899000503 0c05c1f45603fbc11e7193a79bea2202 055f0c90-eb89-4f97-8317-616a4b0a30a4 497c20f0-8a42-4d20-abdc-0415982ebb9f 941f75a1-fea4-4539-ba69-60bb11608f6d a753bcf7-82d6-4fb1-af0d-641898bbff9c C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A3WB-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eee3296aacc98ece092bde88a95e21fc.bam 6267556705 eee3296aacc98ece092bde88a95e21fc 05c0e381-3708-4eca-b94e-f06c81e458ec b096c6ae-e4ed-41a0-a02f-1a1913ef0f31 6868ba1d-b612-454c-8146-74af2f573d76 e4d37b4a-2b93-48dc-b8e2-20fd88c0a8d1 FU 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A4S6-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a4bc7e2ae6e90bc32ee659bb3860b4d8.bam 6186227663 a4bc7e2ae6e90bc32ee659bb3860b4d8 080f8250-c576-4e99-8e11-dc0be67f4e5c 6e2cce33-ac0f-44f4-a406-2a00d1179507 6bcf8b41-7abc-4b6f-899a-1f67b4ada765 672bfaf9-d327-4bc2-8390-55003299eab1 HM 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2IP-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c1948ed7950cdc64cdb78ad9d75abe3e.bam 7403888812 c1948ed7950cdc64cdb78ad9d75abe3e 086d984b-0d78-4bd5-8027-52b10e84ff0b 6cfb3918-ae66-4ee9-8cb7-9734a389dbc5 76b54726-d348-4a1b-ae26-5b08d2effc9d 4c3570ef-d869-4ca0-8f8b-ec346e13e10c EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CJ-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 949eff6fe8a7911389813403cc159641.bam 5061761462 949eff6fe8a7911389813403cc159641 08c4b835-22a3-4d3a-9c03-436fdf173e5c 366c8a6f-319f-4909-92f1-a66f6f7114b1 f8f470d2-924f-41dd-92c5-516b0bf68e44 226e415f-93b2-43e1-a572-bf8e1ce60ea3 C5 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZE-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 32abf93283596ca89616f2d4da149a95.bam 6350625234 32abf93283596ca89616f2d4da149a95 097484a5-cd07-4519-92ff-b63c50fe36c7 6b3cc4aa-e55d-4fcb-bd44-8ebc4f657ee2 5e39485a-ac6b-496d-9984-2ea8075f6a9b 9baa2c92-0111-4399-ad08-8f6169081ae8 EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BD-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7c40e34864e2b2d13177e80096f38143.bam 7585165707 7c40e34864e2b2d13177e80096f38143 0a1c7233-11ba-44fe-84f8-f0d1bfef5161 2a32c706-afef-4a0a-bf1e-381d1d41f1eb cef2efb2-93cc-4bdf-a343-9965e7e0432c e182da4d-0421-44d4-b954-7b616b84762a MY 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3Y-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f89d3e0a2e2f1fdab582a1b68ce5899f.bam 7501636940 f89d3e0a2e2f1fdab582a1b68ce5899f 0ad6d6b6-afb1-44d7-bdc9-38bf71a81fd8 e618cac3-b830-451f-a1ff-5bafadd8a03c 2f261704-d600-4226-90d5-d51ba416b55c 73b25bce-60f8-4f6a-8a23-24191ce2d64e MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A94X-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 48f163a264d55819c86aa8a2ec74830d.bam 6891243985 48f163a264d55819c86aa8a2ec74830d 0b75a0aa-3ea0-47b3-bf0d-50193bc45acf 5f999831-18ec-46bb-a391-54013e9ec412 240ef385-decc-48f7-a798-a81b4ab0410e 5c208b1a-e2a8-4889-97a2-7642f7975834 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KJ-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5f62cd2f8f9c7ff3743d54cc520ce4a3.bam 6382822927 5f62cd2f8f9c7ff3743d54cc520ce4a3 0c10af45-bbbb-4f25-98c1-7aa0e6b8ca15 8741af22-0355-4085-9c09-abee617690d0 7c93642d-7e05-40f8-b1ef-a014edcfba42 f51e97a5-4844-47e4-b6e9-96ad043e31b5 DG 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R8-01A-21D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86bf3eb0b4e960f288e93544d598d981.bam 7635245019 86bf3eb0b4e960f288e93544d598d981 0c1eba52-a921-49e3-96d1-39a717146b27 1fafe3c5-ac9b-46e3-9c98-33b62a219227 d4510801-8ce4-4f10-8b31-25c0a39b5135 6b8e0af3-1632-4fed-9a37-879ea013ae24 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A94Y-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 70f51593c06d2129cf3352223aeafbba.bam 5513400908 70f51593c06d2129cf3352223aeafbba 0ca637f7-69be-4a10-b599-1434fca8e1dc af3fbbf4-5544-41d8-868c-83b5348fdf11 0e7f79cd-d188-42ea-bf96-4ba9e9b8606b f97be3a0-362e-4093-9895-a383ea1399a8 VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GN-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6d81545a5cfb6c93a85d1729d59aad7c.bam 4441509143 6d81545a5cfb6c93a85d1729d59aad7c 0cf2c271-840f-4841-80c1-c8c9d177ad20 5e78de9c-5e9e-4a85-9952-cacd7592adad f727fcb9-e457-4643-9468-f739133b7e9c 7150e9b7-9e22-482f-923b-2203c07bd589 EK 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PL-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b28b5494850965c6ebb15fa6e6047afd.bam 5620791074 b28b5494850965c6ebb15fa6e6047afd 0d553095-abb5-4c12-b6ee-fe9bb6270f3b 29e619b2-5155-4649-a52d-77e996ddeaf4 45cadcf3-ea98-4063-9255-5c18d6a5cbab 62fec159-331a-48ee-a6c4-19de841ff7ce EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5O9-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 972772b96b7ca7d405a7c6a2939665e8.bam 5096856572 972772b96b7ca7d405a7c6a2939665e8 0db5431b-17dc-4209-85f1-4800d2f80560 56bf72b1-09a0-45d8-825a-ba50340c9d28 1636242c-12da-412e-a362-914a20add708 8e088a1e-d5dd-4b3c-a520-dd7fbc716d00 EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RJ-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 889a1fa97c05824c916621c92b1ffb36.bam 4592984468 889a1fa97c05824c916621c92b1ffb36 0de33917-c83f-41c3-b43a-3cae232dc371 eb5fd8e5-83bd-4c84-b0d0-c40c4de434e1 ccd569e9-dcbe-4280-8c21-6bfe4ce60d7a 9492d265-9f48-4b2f-9344-a0604939b23c EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A957-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 742e0e13d633695e8c609137e70b9b1a.bam 6784495458 742e0e13d633695e8c609137e70b9b1a 0de3e58b-fc0b-4148-9e52-75ffd342bba4 f186783d-4e93-41c8-806e-f3d56c1aaabc cb31b3ce-8595-4d75-9436-bb59e95c3a19 805cff10-f34c-4e66-8aae-2539ae4c5bd1 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3QD-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cd9a8e201cf2c457bb9040a2d1d93760.bam 7007374109 cd9a8e201cf2c457bb9040a2d1d93760 0e850880-f0b1-4376-908c-38b43432b3c7 1ec975a5-140e-40f6-8797-4b86e5ce058b 9e2e29e8-d94a-499f-a98a-5b53b2c38f3b ecd247fc-70a8-4c1e-bf11-c0db2ff531a0 EA 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EB-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bb6eb08a1431a0205b008638d9104963.bam 5870272038 bb6eb08a1431a0205b008638d9104963 10aa9617-1fc2-4ff1-b90a-5f55cede88d0 201f1d94-d1f9-4293-8589-dbec412620c8 2c736c5c-9d32-4522-acfd-6620bc291ace 73b8ddcd-0f4a-427b-9a13-549d2cbcacfd VS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DT-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7daeb99a83b506dc0437f6c59a8947f9.bam 5009580082 7daeb99a83b506dc0437f6c59a8947f9 10ff2da2-83a8-432d-a3ac-d1a40676a3ba 6d359d66-e4c7-479a-99f7-38829c1b83bd 46adfbbe-3add-41cd-a388-b1ee0790bf62 0402bfaa-5f8b-456a-8592-41906b3ac253 Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X8-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7d2c1987ff0caa2e8a41cd3fe8a60511.bam 9205721167 7d2c1987ff0caa2e8a41cd3fe8a60511 1180bff1-2ea2-4a1a-bad9-4a8b92d9b803 b69e339f-6b53-4bd6-b320-5bd75e67f193 57902b91-be42-441d-8807-a5ea9c21b214 76f12767-3e6b-4a8a-a6b2-6bd80889fefb C5 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RL-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5db04494568d95a5c0bc4e382c4d5954.bam 8058420263 5db04494568d95a5c0bc4e382c4d5954 12122caf-b450-43f9-af05-7d415295ffdb fda5878e-5f0c-4447-9169-48865e7c3779 61eb08d0-ea01-45e7-884b-ac3d6070172a dd3e80d9-0321-40ad-b963-25e2c94c6092 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-AA62-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fae32cdfcd82b2e8dc7b0e0a68c6e7e1.bam 9574025383 fae32cdfcd82b2e8dc7b0e0a68c6e7e1 132e890a-8ee1-4635-8767-a8667df75116 fd4aed3e-74bb-4653-ac1b-1a45b181756e 173174f8-9d95-40b0-9f88-a4bf4ccb521b 2cbea378-8e25-4497-92e7-1230d90bfc70 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EB-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d704a3b054d00663c0bf5b5867b95d4f.bam 9696187779 d704a3b054d00663c0bf5b5867b95d4f 13925f2e-8181-4cac-8a6e-46bb80a68379 d278441a-d3f3-4405-a56c-8e600542b63f 2c736c5c-9d32-4522-acfd-6620bc291ace c5d3ab5d-8863-4c98-993e-c63a32921a28 VS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VK-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VK-10A-01D-A10S-08.4.bam 16154673264 b2659f3a4b2349cb3ce9f228fb4f51b8 13afabd0-a105-4ec9-bb19-cffa5979128e 50a0ff00-368c-4a4b-bd1c-61c55290fb5d 5ed3c95a-10d0-4cd5-a54d-523e81587fb1 ce68ea9a-1de5-4120-909c-5e4330b61fec DS SRS206891 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A953-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e8bc2fd61b8d6c06c2d5ab0de404bc7b.bam 5714395914 e8bc2fd61b8d6c06c2d5ab0de404bc7b 145bc176-f7e0-4767-8e36-273aaba0684b a3c28c69-7887-4103-9a94-7c0e89401016 da901e97-3a1d-4952-8254-9c4e60d2812c 65730227-e033-445e-aba7-6dfd3ef9df32 VS 2014-10-27 2014-10-27 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A957-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f7ddac02106961d9670265d024158e38.bam 5169191360 f7ddac02106961d9670265d024158e38 145c7632-ef49-4e52-8aba-3b0573472dcc c947a7fb-bb00-42f8-895f-0d03d220be67 cb31b3ce-8595-4d75-9436-bb59e95c3a19 afb4994a-f250-4a04-a918-9f32afa7044c VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A78R-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e241cffd2bdaf0f87aa4afb3eb695d41.bam 5511504608 e241cffd2bdaf0f87aa4afb3eb695d41 14697d39-7cb6-4ff1-9473-debcfcb1b9f0 767b4fdb-0aef-4174-bdea-9cba348720a9 79ae5209-f476-4d65-a6c0-ebc18d7c8942 4e047183-6aff-4211-8bf6-28af7a784b9c EA 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BF-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 814d359a4890c547c790b5097b0f85f4.bam 7257846166 814d359a4890c547c790b5097b0f85f4 14b1c733-2ed0-480f-a5b4-3179ee0c24db e1dd766d-8d09-4066-b1fa-535efff9dd32 4f4e8834-a716-42e6-bd51-60d80a619202 9b53a9bb-c0f4-4b11-93b1-04ea84b8f1b1 MY 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MH-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MH-10A-01D-A14W-08.3.bam 9857896870 d7b0f8c545728e5f8732831798a30520 14bfe24d-0fc9-49d8-82c2-3dda63a3a306 d41f3de8-9eab-4d20-b390-fd0bce1a1afd 3143822c-66c4-4b58-8d29-e92d065ff049 d0b4917b-351f-41ab-a340-3122115c8e62 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1BJ-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BJ-01A-11D-A13W-08.2.bam 16738121140 24d6ebec5b36130aaeda99e1b4c57253 14ce73d1-8ee4-404d-9983-259b98e5299c fbd78148-6bfc-4713-b46d-3a4785e01590 7941d1c7-5319-4e8d-a15f-60b61cb68a9b c7b95d35-7fe9-4c25-94c6-ae6d7416a5c7 C5 SRS203026 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A57G-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a18fae2b151c5f22e63f5de7d8a20114.bam 5283640393 a18fae2b151c5f22e63f5de7d8a20114 1526c108-6f11-47d2-a677-a041813bb0d0 feec64b6-4789-4b18-8664-27eeefb36a57 968bd652-786c-4ddb-a937-dc480cb821fc f91ea887-55a6-47ac-8807-7cd4fb075e14 FU 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X3-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 250c3eef8d7c52a45e6483758ce53247.bam 6114497384 250c3eef8d7c52a45e6483758ce53247 1587c4eb-9c74-433a-a06d-8c9fec3675cd 186538bc-b624-4940-880e-fa08f4055054 4ed1616e-8c62-4104-bcbe-26d7059f04d0 5530afa4-aa4b-45dc-8c6b-c83e570096a6 C5 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A410-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0df7cd4a13235b0f99b3d2aa5a55d8f7.bam 5221804111 0df7cd4a13235b0f99b3d2aa5a55d8f7 15c5a77b-f4fa-4642-b873-54b36aa02c8a fe89a9c7-1d4e-4eb9-9240-ee45fedc26fe 7b356c12-b226-4e58-be7f-44e50e3eefbe 7522576d-1d75-43a3-9ca4-64d425c4e30d EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A770-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 18213041bc152130d661bf2be2e82371.bam 5939501669 18213041bc152130d661bf2be2e82371 15ffaaf2-9f03-4bb4-b54a-79466fa52cc4 32316bce-291a-4783-976a-c5df20f76546 128fd280-9a04-4038-9269-9a945b9a4dc9 f5e6fe54-d348-4e90-9c59-a1a08a43798d FU 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PM-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 377c5d335435ade31ee00639b74f2905.bam 6148678663 377c5d335435ade31ee00639b74f2905 16346961-0a08-4137-b4f2-6f813472fc66 a5228d17-d2d1-44a6-8357-4fa98faba5eb 085fb6d8-6265-484e-9307-8292386714b7 2e7f29fb-97de-4ee0-bca7-6a51c4c3e5cf EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAX4-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 39a02712f64db40456f23d77cdcc80d5.bam 5715811468 39a02712f64db40456f23d77cdcc80d5 16a4e9ac-17c4-474c-a658-8d2f45cc5086 f8ac2ad8-426f-4787-928d-b176ad4e01ca 13d72130-604c-4d79-95cc-53c2e25d91b0 4590d000-d67d-4a58-9dd4-612dc4dcb9f9 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UJ-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7bb2db85254a9e2a4e594906b7f91fd3.bam 5878128201 7bb2db85254a9e2a4e594906b7f91fd3 1776ca74-d7c2-437d-a18e-bc5f96d7293e 1c6d4f2f-d360-468f-aac5-bce5af7c6185 78c62970-4b48-4dc4-9042-5f48f42818ec c0363767-806b-40aa-af0c-035483e3896f VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UI-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f2ca47fdccc2a91d326c340a1d3da4ee.bam 5441821759 f2ca47fdccc2a91d326c340a1d3da4ee 18129153-2d00-47f3-97d5-ee918f2a5fba 03db8232-63c1-43ba-a23d-d3460281f6c9 ce5765fb-5221-4cbf-aa76-bb863803df57 24ea2d5e-66d2-479b-8be6-ae59336876df C5 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RM-01A-21D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eddc943d62c9f457b039686c48afbd7a.bam 6861274887 eddc943d62c9f457b039686c48afbd7a 1847efc3-9723-432f-b091-8a551ebcd70f 801e67c8-c506-410a-bdf0-856a66e974f4 c13215d9-26a8-4c8b-b4fe-5da6aa3222af f0ca60fb-bd45-4f15-a791-0c5b1218d8ef EK 2014-05-30 2014-05-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WF-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b73b473daaab277d422bbe1fcb71e5a5.bam 6737455262 b73b473daaab277d422bbe1fcb71e5a5 18e032b7-6913-4828-a90f-3a1141995ffd 1330e345-c054-4afb-b8b4-ba2bf6615772 d02ffaa9-0403-4a89-be01-cce35c80dd69 14c03e34-5e97-42f5-9789-2a92fb8bbcf3 DS 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HU-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f12a7b7251edfa076987f69fd8a15a55.bam 6659876888 f12a7b7251edfa076987f69fd8a15a55 19b2bea3-aa5d-40e7-b042-f2da0fbdd5f1 1f619d66-ddb0-4b45-91df-6d10a705f8bc 9912432e-74bc-4846-93b4-fa2bf8070bd1 05409da8-60dc-4073-91f0-f91832f3a607 EA 2013-06-19 2013-06-19 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VH-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e197eee84cecad1e059409a7cb96c4d7.bam 5988559322 e197eee84cecad1e059409a7cb96c4d7 1a6891aa-ea30-4961-9ebc-0374cb79e700 8b53735f-6dfe-4771-82ed-13bd7cae1746 6813c53c-b256-4115-ad90-24d75328779e c122e138-3fd8-4687-89dd-775f5876d07d JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1ML-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1ML-01A-11D-A14W-08.3.bam 9777703260 63ea27724e5af26bf74a26c3db846074 1a7599c9-7b5b-44c4-a754-c2fce51c6454 91a214f1-6376-43ff-bd4f-e1ae22fa2315 374f614a-bcd1-4283-ac6f-fc27ddc79987 f5495789-2c61-42f2-b6b6-a14e00d2f985 C5 2012-06-12 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-UC-A7PI-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f4c56c8d5f2a943c21f5f0c7e50985c8.bam 6875584092 f4c56c8d5f2a943c21f5f0c7e50985c8 1af8c290-d6bf-4abd-9ffd-5582a3689378 7512124b-ac68-41c9-9434-ca0ef5482e1d c659f1c9-f3b4-4cfe-8627-2bb716c62b96 9f25259c-40ed-459c-b84d-82c025bfc999 UC 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-AA62-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6369ebaec7c75bf1e7b248e320086179.bam 13572200495 6369ebaec7c75bf1e7b248e320086179 1b220691-281a-4ed2-bb63-e8c71f1809fa 72e8966e-2481-415f-8157-af9d6030bb36 173174f8-9d95-40b0-9f88-a4bf4ccb521b 36425d33-2055-4f43-bbec-d8f22ce31aac VS 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A959-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eb5da89035eb8e7ad7ac82717fa46775.bam 6611922685 eb5da89035eb8e7ad7ac82717fa46775 1b8a621c-1de6-47ba-a4c0-79f9e5eddc06 fec1fa81-3e71-4031-a363-cc6ebbddfbdb f2bea37e-0d19-49e1-91a0-a4de4dfa2d35 d1894791-e427-4db9-97b2-a3b73a4e8e30 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A5QV-01A-22D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e9429534fc68c39726fa95374fb2f43b.bam 7388696519 e9429534fc68c39726fa95374fb2f43b 1c017b08-6f4d-477f-9410-6c6058c3af8b 915825bd-5ffc-4cca-a0c0-5ce6809dad1b acf5cbf3-09ca-4f4d-a44e-1792613190fc dbf0af15-1463-4884-94d9-959ea3cabb67 JX 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A23L-01A-11D-A16O-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-FU-A23L-01A-11D-A16O-08.2.bam 10578346170 d704819335f14208cc1966cecba3a1d3 1c4ac0cc-ac4a-42ef-afb3-e501d9e5476f 99551676-a16b-4a7c-84a2-571731130d86 86731af9-2d33-4521-9cf9-5f6152ca15d7 7748115f-bce5-4932-8bbb-ae0d96725f37 FU 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-IR-A3LA-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 20e8a3e70f699221fcedcb31818dd250.bam 6188549958 20e8a3e70f699221fcedcb31818dd250 1c77d6c8-5639-4318-bbd6-0a54f7775233 618a9c00-9d35-4a6a-9b03-261f30d75897 7b8c04d7-824d-493d-8f2c-9ed87a907192 7925ea80-8aae-4d99-afe2-74ad1aae6d9d IR 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UV-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2fad624c3fd5eda57b8bbaeb7c902cca.bam 7323050100 2fad624c3fd5eda57b8bbaeb7c902cca 1ca54435-6c6d-4dc6-a77f-87fa55f0ff55 de145e5a-2718-406a-9087-3719683d261c c9e4bac6-0cac-4fca-a548-527deac5b880 60817f05-7c77-4631-a77e-d7a018aa1a23 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-AAVH-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b87f87504b3819de2b964457adc1c0ff.bam 7145553575 b87f87504b3819de2b964457adc1c0ff 1ce8fca3-2ea4-4c4f-8942-e3b720bbe722 3cfe99c1-861f-4719-bbec-7c882b042023 1c0b5c18-8760-4483-a88c-1d1d89f61998 f5a7f638-f35d-46a2-af49-3ffef7cbec47 JW 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BK-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BK-10A-01D-A13W-08.2.bam 18385584456 14400b567d5b7044f92b424cafd700c0 1dfae944-d2a1-4aee-afd3-8e251275024f b0555c04-f588-49fa-938b-7b031157e11b 7df6c297-f2d6-43ef-973b-1f95676b0cc4 261c12ea-fd35-4c1b-9615-b91e160e7eba C5 SRS203041 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A6QX-10B-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a826bed38c09e6fba4fa8bbea130f13e.bam 7207248789 a826bed38c09e6fba4fa8bbea130f13e 1f9c0330-5d8d-4b55-95a9-d0b486d751a2 6f0a4ae6-186b-46de-b2da-a87dd33725a2 a300db40-e0b8-4c45-abbd-d7aa06211e9c b4477a58-5b29-408d-8dd5-dc5123fbc390 EA 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A69L-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7e55919974d507fc0f5acd112121815c.bam 7363624300 7e55919974d507fc0f5acd112121815c 20115262-d64b-4d16-813d-41d08ff195b2 cbfb312b-35be-4631-be58-94556dbe866c 6dca2a6f-7f2c-4524-b528-396a889b2a3f a48eee9d-68c6-4675-96ed-c860139d779c EX 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PG-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c89c41ad364442929dba79a0508def59.bam 10728995581 c89c41ad364442929dba79a0508def59 2099de7e-3d5a-410e-a7f7-dc98b15eb8da a1eccef2-4d5b-4752-b42b-5541c55a8741 53d99a89-6ebd-4637-91db-7ce43ebc6b8b 15f86bec-a427-40f4-af72-9a61bfa4e445 UC 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VI-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5549114d1e2798b9609db8deccfbd8bc.bam 6280297434 5549114d1e2798b9609db8deccfbd8bc 20fe99ef-316b-41eb-9b10-8814a1334e8b 4cf0c64a-057d-4e79-85f2-dffc58753ffd 53eb4c4e-0719-476f-9b2b-279d438d7710 743df838-a32f-40f7-af1a-5331c62d1d6e JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LK-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7def068cc1de3627a7445181b44df900.bam 5920538667 7def068cc1de3627a7445181b44df900 22703010-a77d-4c6c-94b0-fe0c279525aa 6eada57d-b416-4e87-bd23-64a7c4b7da4f b79558c5-1db2-4b1e-a7b8-efbd19aa855e dd471c07-b1bc-441e-8fee-8df228eba7b3 IR 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73P-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 365cdd248c35f915d9eff9a090b39896.bam 7579376836 365cdd248c35f915d9eff9a090b39896 22b3df5c-0cb4-4e11-a048-2f8204ea9e8c dd9fd43b-adc3-44ee-a69a-f5d3215af715 3a3a9b5e-12a1-41f5-a54c-d4c1e0eccb9e b0377dfd-622e-4d65-b2da-2499f3c8e5c8 Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R1-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 132efc96e630dbcdb3cb2cb0703a137f.bam 7186519100 132efc96e630dbcdb3cb2cb0703a137f 22c8e850-c73b-4410-abd0-969061eee67a 43f1663d-29b7-4653-ac53-0b2a724ed57e f93ccd2d-3c77-4bd3-8cac-5203bd57735f 4913cea2-4243-4cf3-a0a0-b38e92f29ede Q1 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QF-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ad5cde4c00727d0d58b9fce681f3a7ea.bam 5688335468 ad5cde4c00727d0d58b9fce681f3a7ea 23045164-0ff1-4222-a11b-ab8961e5ee87 bef3823c-9096-407a-a811-94bd4d5c2e54 21254cb0-68f3-4ecc-8d9a-73fb0e994c5b fc7e94ef-9dae-4e71-9673-63b8cf8919a4 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EG-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d249c9603cab4f8cdd1a0375fbe0a07b.bam 6560813380 d249c9603cab4f8cdd1a0375fbe0a07b 2331746f-92e4-4634-8b36-737c8d1d2d1d d4ca11f0-eb34-49d4-8b49-c0d7833c5d96 b0b293c1-bd7e-4ba8-9f44-47398488ef2c 2d433014-1b56-4790-8c83-6ffa37040d9c VS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PG-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a09226416febd6d193bc89e997a08e6d.bam 5317623457 a09226416febd6d193bc89e997a08e6d 23d28bbd-b14c-4092-b313-3949c09f03f2 b4ec4b14-3c54-4fc1-a202-7b6b2efbea5c 5194a247-cfee-4c11-9475-cf5521a8c6e3 78fbefa6-ff8b-4011-bbe9-621abae27c66 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A5U3-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8124cd2d1f63991379ac49f067e2d467.bam 4726898151 8124cd2d1f63991379ac49f067e2d467 23de3e89-c299-41d3-8c5c-394af9ac94bb 83db6019-579d-4875-a935-6878ed5119e2 1399d31d-9d5e-441a-b400-8b8a92a6ff8b d314fb5f-fab3-4bc8-b294-217ba6e73cb1 LP 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3X-01A-22D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d5b858b1a9bafefdd9b575d78055120c.bam 4753971798 d5b858b1a9bafefdd9b575d78055120c 23ffd531-08f2-42dc-8396-b4d22477a7e4 040e7d91-bea3-4de4-989d-d5a643c41a9a adb7c5c8-4afd-40dc-89f1-571fbd88e4f9 8fc32f98-8bd2-4f9d-9039-c6092145d1d3 MA 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XI-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9af27bf34b33b6775dbf0c19b79d4e85.bam 6687429217 9af27bf34b33b6775dbf0c19b79d4e85 24b5156f-44b6-4058-8847-a1ffc11641a8 a5109a63-2837-4e14-9700-ee23eabeecf7 959fe574-054a-4fef-9cbe-a801a9a355de a69e5235-b458-457c-807a-1cf5e907b869 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2GZ-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 27cf2f92732fe848738cfb805c2d0b03.bam 7608617437 27cf2f92732fe848738cfb805c2d0b03 24befcfd-220a-4e0c-abd7-83ed700e9b5d 011036d5-7495-4d6f-9294-edd6cf42d72a d7f07485-522a-49d9-b105-5a9a51aca8f7 5686f844-be97-472d-8564-a35c3a3ebac2 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A3L1-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bcf5a8690479381edf0399b98a1cc483.bam 6470316356 bcf5a8690479381edf0399b98a1cc483 2535e2b7-ea81-4d2a-9e2a-8c4d56946a00 b42c3a13-affb-44db-b466-d88d9f3a5630 f5d90810-8c4b-4ced-9360-383e42cb54b3 92f592af-39f4-4772-83ba-83d303bd1d60 EX 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RE-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 68e077ee5e55c24b63f623c7590dd26a.bam 6252083424 68e077ee5e55c24b63f623c7590dd26a 26d746a0-e7aa-49bc-b13e-4daa646251a0 96ea0b20-0da0-4bdd-bbf0-799b981e778b 9aa36ac2-8418-4109-a3c1-63ca8742baab 7bcf54b6-3ffa-4014-92c6-51a7099e6f02 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A7HU-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0a4d6481339d2171d846c101e2fbffb6.bam 6154553831 0a4d6481339d2171d846c101e2fbffb6 26eb04b6-b74f-42a2-876b-9e21a3d03168 25a5b3f8-5354-48e0-a3c8-05268f2075ed 7067b7da-fb1b-4827-8fe6-9433ed672d3b 40ccd963-2f0a-4fdc-b793-9e202bc21394 LP 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LF-01A-21D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cb8baa47b7f5ee3947c85d287ccab79c.bam 7138227817 cb8baa47b7f5ee3947c85d287ccab79c 27889888-5ed2-494c-b957-c7f21a5692c0 224b26b0-dced-4b5a-95c1-c5d4c2348b07 785ddea1-399d-47d8-b2b0-39e95eaa24b5 b6a74a02-cd3b-4f0a-bb2f-f90c1d3f6d14 IR 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A5RQ-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 61e2e09b88005aef9df903319565d268.bam 4126601881 61e2e09b88005aef9df903319565d268 279192d7-20ba-4733-a584-9b02b21783c7 7e823717-75d0-4121-9743-ba735bd6832f b16469af-a721-43e9-a4d7-c39b94d1139f 1c93033c-aa43-4f75-b299-7c5daafd226f DS 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PD-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6c1eaafa94b224fdc640b1fdde5dbd8d.bam 6911805286 6c1eaafa94b224fdc640b1fdde5dbd8d 27aa8ede-6e8e-4371-84fb-2efd4f4239e3 1d689a1c-66ac-4995-82ee-a1d9ea8263b0 0f18ef74-019b-478d-aecd-60cc715bfdb7 d3290464-56eb-49fa-bb05-3ce45978929d UC 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3X-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f2bb5ba4c2be0dee5763003ae6a70398.bam 6654943146 f2bb5ba4c2be0dee5763003ae6a70398 27bac3ff-82f2-49a3-80a9-09fc5772d36b 9764d04e-244f-417d-a9c8-6273dfbc2aeb adb7c5c8-4afd-40dc-89f1-571fbd88e4f9 029dd926-f405-4505-bd90-9fa612f565fa MA 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3HY-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4df72e3ee9ffc4c72cf1d5af42b8a238.bam 6748482187 4df72e3ee9ffc4c72cf1d5af42b8a238 27cbb128-1497-42e3-82a7-6318ad508539 36599ace-d4cd-4bd1-a917-76ec50563e9e 674e010c-7ad4-4dc2-86b0-284cd4560633 a5879a60-aa8b-4da0-904a-9ffe2968418c FU 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V3-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7353ad9ed82b5ebcadee53809d9b2ddc.bam 6740433707 7353ad9ed82b5ebcadee53809d9b2ddc 283a2761-b06b-47ae-8bc9-7f19144e8922 50d5a0c5-1c4b-4e20-90be-51879bd364d0 1cb1d2ca-dfa6-4c42-9da9-c711dc5aab5d 44353b5e-6724-469c-bd25-bc1fbfe634dd VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UR-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eda129aea0ac0a1cb5b1d334168714f4.bam 4976861948 eda129aea0ac0a1cb5b1d334168714f4 29941b7a-2b9a-4110-98ee-2cd47ea0a8e1 d011ec85-431f-42ea-bf23-4fe51e2235af adc60720-ac20-4e73-9c37-3ad3119c07d6 67211d18-7858-4234-9af6-ac99136de6c9 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QR-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f40758f74e5486f8ce125d1c799e14cd.bam 6598206073 f40758f74e5486f8ce125d1c799e14cd 2aca3a3f-64f7-4e63-b39a-79b6e18714d0 741a10a4-8e41-4c4f-bb7f-9186bb035bbb db44488e-4ed0-4082-bca0-bbfd22ff0537 7f18d32a-281b-472d-ba6b-37458a904f8d ZJ 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A44S-01A-12D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f032036df8bd2e64ff18af19f019a214.bam 5578542899 f032036df8bd2e64ff18af19f019a214 2b6d7c79-8b69-45be-9245-01672b99b122 2c6a1b4c-b430-4670-aa45-87deef906452 cfb61fd8-0bca-40b4-878c-cc914a289792 0d96e0b0-5abd-4528-a733-354308e0cfef EA 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WH-01A-22D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7e96cd032d90584f6f0f45b6829e4e97.bam 4768218238 7e96cd032d90584f6f0f45b6829e4e97 2b96bc2f-cf22-4f0a-99fd-00e85e109b34 c1b9a90f-1b7e-4ce1-955e-d67478395417 dadcf6d5-03eb-4090-bcc3-b9e9dc3c7e08 b742714f-55c2-48b7-9d4b-667f82056f68 DS 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MJ-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MJ-10A-01D-A14W-08.3.bam 9159472453 5b28d23299f36b6982f44656dacb004b 2bb65316-9e92-4b93-b2e4-eb8d89b7e736 b6cb5ac1-ed74-4096-b0f4-9960384a128d 23f011e2-c025-4494-8016-2140cc8d4bce 5526b07d-d091-4034-9a99-40cac1fe466b C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9V1-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3160caef6c848e811e1f9a452fc2366e.bam 7024831661 3160caef6c848e811e1f9a452fc2366e 2bed0426-f27d-4cef-ab00-74a8a57e639c 426616e4-da1d-44cb-a12c-030f5a818769 a6a07bc7-ab1b-429d-81ed-d7a890c88e51 f9668be8-b3d5-4251-8415-379e52818238 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2GZ-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b4c5b2de48b81027fac188e6c29712ec.bam 6941522480 b4c5b2de48b81027fac188e6c29712ec 2c39d655-549c-40e1-b535-19303ebc7aac 0c7a6420-3ad0-4790-9c3b-2139d4edcc0a d7f07485-522a-49d9-b105-5a9a51aca8f7 fb6d3454-efc5-4e2f-89fa-70aa6114527d EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-4J-AA1J-01A-21D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e67c78313b2bf9fa2f8ad9a664e45cda.bam 7910082763 e67c78313b2bf9fa2f8ad9a664e45cda 2c665e6e-e5cf-4f77-8060-efd2bc6ae961 45cc5613-9ec7-4dc1-9e4f-b35b3a222cf7 53eac147-7eb8-4c54-a982-5e058d6749f8 189e0024-c636-48cb-b423-3b3d6bd0caaa 4J 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XK-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 536ebecb6e57f6873a56f05456cbc563.bam 4249957887 536ebecb6e57f6873a56f05456cbc563 2c7a0bcd-2cd0-43e6-ab20-8d1037667bd9 dffc8f8f-0e39-4f38-a745-9a1455472952 8ac819b3-4227-4eae-be03-8760b197df9a 04d6f4d9-b20a-4b4e-9511-7ecb90ce9515 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R2-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eb0f0ac8fbe80d63272d93326e9cbb1f.bam 6082371980 eb0f0ac8fbe80d63272d93326e9cbb1f 2cb922d5-ed59-44ed-810d-3d210f8aed21 c14c1b6f-f669-4562-962e-943f192674a6 f3cbadb3-3b83-47cd-b8a0-b0e10343a295 cc7e7631-8c2f-41da-81ac-82073a7ab5d7 Q1 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R8-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d7362b45c2cb4837556d20b6275eb4cc.bam 8037540690 d7362b45c2cb4837556d20b6275eb4cc 2ce41895-2147-488c-9ebf-fafbdafd2797 1ef5ec74-19dc-4584-b0a8-edf7c5fda245 d4510801-8ce4-4f10-8b31-25c0a39b5135 0c67f012-629a-478a-8836-646272637695 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XK-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 76e45595077a11a28987dc1329821606.bam 5922997171 76e45595077a11a28987dc1329821606 2d2bbdfc-3de5-4919-a7e3-2654fd7cfc87 b0413c9c-52ea-4819-9921-c5a6c18bb400 8ac819b3-4227-4eae-be03-8760b197df9a edbcf0c7-e8c8-40e9-8170-bf91de078f5f C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A410-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9a6634616aaf1a4f289986b55cbb3ac2.bam 6582231697 9a6634616aaf1a4f289986b55cbb3ac2 2e43340c-f833-47d3-8198-859c7e0f9477 e61d3ec2-0e57-49d6-9def-db06fbd63f1a 7b356c12-b226-4e58-be7f-44e50e3eefbe 7396043b-2ba2-474f-95a3-72da70f10e5a EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QO-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4d264a15f44a6c76daf2a25311b2fb5d.bam 7583198692 4d264a15f44a6c76daf2a25311b2fb5d 2e4aa78f-325e-4cc6-8d9c-6a0fbb90b499 f4482174-bb1b-4253-9b3d-3ca233d011a9 eb3ba1fb-8254-4c02-a982-507f075cbac1 9e9b2fc6-15f5-42fd-b72d-3ff3297887d0 ZJ 2014-10-27 2014-10-27 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UI-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5d44d5795e8c9d00cd50bf17bb738642.bam 9765238562 5d44d5795e8c9d00cd50bf17bb738642 2e55d985-aeb8-4fb9-a107-4740bbdd61cd 0905bb3f-bb00-4fa5-a861-f71f25d2b78a 9c516d28-bef2-4334-bdda-97950bd95ac0 f6391485-7528-4719-a480-167b1cdb2ae6 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7XC-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build faf0f8178c3c4154121f9c673ce81eb7.bam 6622209515 faf0f8178c3c4154121f9c673ce81eb7 2eb117c2-70a2-42bb-8dce-11b05ebf1042 2da6ce83-78c0-40d2-9d8c-dbd55264ea85 dedfd5fb-3c72-40f9-a7ef-52c2176bf662 e8355ff6-e927-4a35-a9c1-512442279a10 C5 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3Q8-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6ab34ba44a05cc3f41ce7af3fb9468b6.bam 6196091761 6ab34ba44a05cc3f41ce7af3fb9468b6 2eb7d6ca-6e77-4c5a-9147-7e6762c98570 4fe4de09-aaf1-4b8b-8708-e41c19c23cac 34629eb8-0c5e-4910-8e13-bf7d6a1e337f a5162279-45ae-4031-b119-71a8c934918f JX 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A78R-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e173a5fe513dc6e92e1022ca0e0074a4.bam 4847031019 e173a5fe513dc6e92e1022ca0e0074a4 2ee23055-3f8c-4121-9997-19916502ebdd 8ed78eb9-423e-45b8-8007-22d00b35a620 79ae5209-f476-4d65-a6c0-ebc18d7c8942 34b0a81d-9155-446f-8f40-5c1dc65bbb1c EA 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A907-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build de71cdba66a51708134d5f5a9537632c.bam 4107992024 de71cdba66a51708134d5f5a9537632c 30170130-4bc2-45ee-b50d-790ac1ae4926 0e2bdb7e-325f-4312-a9ef-325243d34f4f c92696ba-f549-480d-8d4a-5f23b27aa336 b5495329-a954-4bee-ae9c-9bc909acd1c1 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LV-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 27e073f87258b85d2d72efc7adf672af.bam 6592328268 27e073f87258b85d2d72efc7adf672af 3072ae14-5220-43e7-87d6-af5fb3a8c1ce 28fa35ae-f144-4ef0-918e-fe72471c8101 00bca18c-b3d4-45a3-8f19-034cc40449a4 6feafb61-d586-4e88-84d1-dfb715aefdc6 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UU-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 28034a83d68f79f29631063a85718ee7.bam 9536007434 28034a83d68f79f29631063a85718ee7 30e3f0f1-1195-424f-8cc7-992d83cfddb1 06aebd71-29a6-41e8-af09-b3e09652b902 4770ec81-9174-4d2a-af54-70c00696fb0b ba357d05-8eb5-4a58-9ef4-4720cfbc1868 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UB-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 637be76a59850beb9dab2e97416afb09.bam 5484417851 637be76a59850beb9dab2e97416afb09 31147469-18bf-40a3-af92-6dc185e2ccd8 bba17ee3-b102-4c2a-9ac8-6278cbed8582 ca242b4c-b879-4e13-a1e7-84c984067189 75b41b7d-be0e-4def-96c7-c83937111d5b VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LL-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build abb2445df163d307960f469837fae2fd.bam 4196271550 abb2445df163d307960f469837fae2fd 31341d85-00c4-4a88-970b-7386a1b89b40 8788027e-3464-4a19-896b-4f5c3dccdee5 7c4ab1ca-4bdd-4ef7-9a42-f6c0c7136d26 a0fb972a-ce8f-441f-8707-c3cc1081dee0 IR 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A770-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 55d2df744993bcfe847851f06ae137af.bam 5674686016 55d2df744993bcfe847851f06ae137af 3171f24d-3d16-45b7-b563-ea759454f88f e7037ea0-11e6-4f5d-9d78-3ee3c13dfeec 128fd280-9a04-4038-9269-9a945b9a4dc9 9eeca3d2-aded-4f64-93c8-77c4ad4d87c0 FU 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LI-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5fe146cd9c6c86d07939f861c4f88dc4.bam 5106764836 5fe146cd9c6c86d07939f861c4f88dc4 320cbe1b-2795-497e-9c16-e0e5051cebd3 5c21b027-1850-4ea4-92e7-8a7e863b86b8 75bc22d8-738d-45f8-b6c0-c664f5fef47c cbe595e1-116b-4745-9cca-56df1b8806e7 IR 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OB-01A-11D-A16Y-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OB-01A-11D-A16Y-08.4.bam 19636304115 a51f1d7b5adfc09be94d4d144c853c96 326f0151-40b4-4b17-80aa-64827559682c efadb017-3d80-45ca-accb-896cea21c2cb 29a48c93-bade-4346-a901-de35a6537337 d664c261-6c5f-454d-b908-334dc2683a2b DS 2012-06-05 2012-06-05 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1M9-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M9-01A-11D-A13W-08.2.bam 17723395715 1390d985cbb32fff8a1be66cff8efbba 336fd4e9-b508-4ea2-a08e-2090206471c2 70e4fbc8-094d-4493-8bf3-d28395d721e1 a3be445a-a592-4073-815b-47ae41f9c4a0 577057af-7775-497b-bee9-e04562648509 C5 SRS203098 2011-06-21 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2RM-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b5c2412206cbbe41dd2bf0c7d89124e9.bam 7513839782 b5c2412206cbbe41dd2bf0c7d89124e9 34372b13-8f1f-457b-b626-0ff74efda990 b2a9b6b3-8ae5-4da7-ae2e-02cb5b0390b2 c13215d9-26a8-4c8b-b4fe-5da6aa3222af fe891cd9-ae0a-4242-8a56-b5d6d2b85b43 EK 2014-05-30 2014-05-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GK-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a513c8bb00c59cf527ef0e6226f78737.bam 4701023643 a513c8bb00c59cf527ef0e6226f78737 3455e620-0691-43c7-a82b-52c52f992af7 52a083c8-1fab-4231-ba39-ed198964c290 d07d0a56-a25e-426b-8384-9d49e6545527 f9371b06-c6e5-4363-bdaa-bd85f95a01c4 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VM-01A-11D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VM-01A-11D-A10S-08.4.bam 16242348923 3d61f58f536fae9ba5de47afd10b9860 352f86d0-ffe7-4f84-a4b9-8d933cf7fa0c 70fd6f1d-ed8e-4e5c-84b6-70f804ed304a ed6d989d-da09-4818-8fed-f33d88b628af 52c90714-b4ed-42fa-8763-914140308ffa DS SRS206903 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A8YT-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8cebc3b5f0b34d86020946a4af17dbc4.bam 5780073281 8cebc3b5f0b34d86020946a4af17dbc4 3539cb5b-8f96-4358-b690-cf28cad31272 de3eb6b3-db0b-4672-9aaa-7fca76742e6f cecaecb4-51ef-407d-a882-0e4b444b0a77 575df574-6342-4c62-933f-bc44be4a0633 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BM-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BM-10A-01D-A13W-08.2.bam 15243470104 ac19b988b53cc531338eadc043242195 36169f79-bf28-42ee-8fa4-04a765018faa bcf97f0d-dd63-4c01-9eb7-3c42ee52fffd 7fb8e7be-4118-41f8-b785-5cbb0afdb8b7 79fa29b9-822f-4b0f-9108-50e65cd943ca C5 SRS203059 2011-06-20 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-MA-AA3W-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8b535742a998ff4f77f7a927cb4d6228.bam 8238055298 8b535742a998ff4f77f7a927cb4d6228 36d70a3d-3289-4bbb-9c8c-2c8b2b4b33a7 a3f531e6-d627-432e-97ab-b34731b3e5e6 fc2bce29-4685-49f5-b901-2117bf673bb8 a047fcfb-307f-4548-9ab7-2e2336ed17a2 MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LH-01A-21D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 40f7fce159955ce77410d6b208cd7294.bam 5545492078 40f7fce159955ce77410d6b208cd7294 36fced40-31fb-4aef-8661-4952fc345fe1 5be7200e-4af1-4936-8f1e-5ada6dc89179 f24ed9c0-92bb-4003-86d2-42ab26617a05 d95e5389-dd55-4d55-ab01-6a770c66502f IR 2013-08-16 2013-08-16 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RN-01A-12D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 904e62aa0c337fcb865135f832c8eed8.bam 4753402253 904e62aa0c337fcb865135f832c8eed8 374161e1-785a-400b-b661-01abb3b1d8ce ff6778d0-314d-4e6b-abf8-e60c3308c539 b610d391-0c9d-4114-94d6-5e4aa4270122 24bacabf-8c6f-416a-b1f3-b0baaa2f0ad9 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QM-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ce0120949220cac24c911d7662f0be92.bam 5031546291 ce0120949220cac24c911d7662f0be92 37769220-5703-4f2f-894e-ae66a722412f f4b637d7-80b1-48f7-b04a-854475adef82 27d2b645-f1bf-4486-b0b5-273681b58625 9992b93e-8ec5-4f2b-9930-cd82c14f5569 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73Q-10B-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eae73cd2e1cc84cfc55f6efba8a1c1e6.bam 4920255211 eae73cd2e1cc84cfc55f6efba8a1c1e6 37d01447-2118-4549-a8af-097ffdf54dcc 19807cb3-c66b-40c3-9f44-e9d268c8d4bd 5c72bda2-2ec0-455f-ab27-7247fd5ffff9 142a9c86-02c4-4df7-9fbc-57ab52930bba Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DV-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ba40c1c4fdddee58392970fb1c95f24e.bam 5520679771 ba40c1c4fdddee58392970fb1c95f24e 37d682bb-aca9-42f2-a639-8a2ab0afe39a b8796c74-495c-460b-9787-199170dfef8d c80f777e-d150-40f3-9fa9-02ef9a6d7692 f717f1ad-0582-47e3-a337-c39e0d837f4d Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CO-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86f489add351f6226dd55936f25d64c2.bam 6293859682 86f489add351f6226dd55936f25d64c2 38047435-d965-4fe5-82c3-36b12c829fe2 da3d48a2-3f68-4e10-9fee-03115d41e633 ff3808e4-eece-4046-819b-fe1019317f8e 562dbeca-f85d-4b58-8802-b09d0dd161c1 C5 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RO-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e242542be0527ddf0d91a77152a557f6.bam 7268476818 e242542be0527ddf0d91a77152a557f6 38445a94-320a-4891-bd3f-9901dfb7c7ef c386a7c5-17a6-449d-9a30-7066e3c23e6b c996cffb-8132-4973-987d-143274b6a081 21813721-b033-4030-82e2-f12833cb7789 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UT-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9174de4b567bd84b1079daf36ef7c3a8.bam 8136110251 9174de4b567bd84b1079daf36ef7c3a8 38b780ff-8304-4858-81dc-b5bf588b9b61 0e1e6250-7d44-45ca-ab92-a3b741a44933 a945fd96-ffb3-4787-bacd-60da4560c8a5 c772bc85-f358-450a-8693-899eac419271 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BI-01B-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BI-01B-11D-A13W-08.2.bam 18477887352 555bf418b166c32748099f97a1a858e0 38d1b82a-0638-41a5-8403-81bc7ffd3cdc 57a1e38f-6b77-40ae-91f0-9f950e57fe03 91310434-2a99-4e1d-81e6-3d58d097089f e75716d2-39cb-41d4-9e14-3718e9639c96 C5 SRS203017 2011-06-19 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1BF-01B-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BF-01B-11D-A13W-08.2.bam 17782608169 81d84f4d1f2d4422e14ab02859a14959 3973c1ac-7275-42bb-8190-0eb1c2541eb2 787570f6-4956-48af-afef-71adc28e3e31 262311a0-7a10-4934-8fba-11ee581ad738 37670db3-74d9-4176-bc34-65d2e062d1cb C5 SRS203008 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A4BA-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e8c13bce8f73b08085f874f52df41603.bam 7228895200 e8c13bce8f73b08085f874f52df41603 39b7b445-ea8c-4d04-b577-f920dca6f0ca 064a0bfd-273b-4043-a48b-323703069f1e 9e79059f-3453-4aa6-9849-55a267c711a4 c49c9269-aa6b-4e0e-abad-0f5e7df171e0 EA 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AB0I-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 38c40366258a54ccba9765f7d4288457.bam 10190203291 38c40366258a54ccba9765f7d4288457 39bc48bf-bfbf-43f1-8762-02c8def8785c df48f03c-c821-4f2f-895e-8a881769749f a4f13656-a941-498a-9ac9-f020ed559b35 91e7aa6c-3424-4e98-a4cc-8c6d3474ed5d ZJ 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A556-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bd14966be2d361c4dab3d339da8b0ea2.bam 7343328689 bd14966be2d361c4dab3d339da8b0ea2 3a733648-7ab7-4af4-b516-717004a1ae59 1c425e47-7f54-4c68-9be6-d58b4b980740 2d34e9a3-298c-4365-b7a1-a507c7f069cd 2cae861c-a035-49e8-9dc9-977f2da23137 EA 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KK-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e044330aad5fcf2021b72594c6dad66c.bam 7981560966 e044330aad5fcf2021b72594c6dad66c 3beb28aa-1fe0-4d94-9ac8-faeca4b12a5f 78621820-2b45-4adf-b5dc-fc093a302208 8dbcb17d-0396-4faa-9b32-8e2566424bff 9c102289-0fac-4646-b2ec-ac1037e54536 DG 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A556-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7146cab4ad93164a008fb4499d0ede95.bam 7842961465 7146cab4ad93164a008fb4499d0ede95 3c8b9609-1067-4264-ac77-0bc86c424dc5 e6f0f4ac-02bd-44c2-9190-a1f437b2f83c 2d34e9a3-298c-4365-b7a1-a507c7f069cd 40608785-ee17-4a6a-8f61-f83b4a69ea7f EA 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HF-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1dab620ce7fd12477460b29c94ac03fd.bam 13573251420 1dab620ce7fd12477460b29c94ac03fd 3ce1957a-cc2d-4dea-8d1b-638bd3bb89ab 0c2ac98e-7ee3-466d-8fbf-6a8345ebcc41 085df27c-9bc2-425a-9a49-547d692ea028 8ef5e6db-2fbd-4d96-846e-7708c085e72c C5 2013-06-08 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VM-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VM-10A-01D-A10S-08.4.bam 17162109733 b7a45f2966be762705607873729dc5ef 3d29a47d-957d-4076-a127-5206871994cc 3382bf29-050b-45a8-93c9-c99354871db7 ed6d989d-da09-4818-8fed-f33d88b628af 35c77b35-7f1b-4589-b985-c0e6cf25ded8 DS SRS206909 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A5FO-01A-21D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8ca85f98c6fb3551f2a6cbbb1428d06b.bam 10597565963 8ca85f98c6fb3551f2a6cbbb1428d06b 3de6420b-78d2-41bc-bc44-ed8c93889d6d 1a852e70-6552-4734-876f-ceb4ed421833 ed17685c-b706-41e4-8a76-11cb0e6700cd bfcb73ba-363b-4dc3-9b36-246043e43f12 EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V2-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c7f50ef741d6634776aff5991655e46e.bam 4613000873 c7f50ef741d6634776aff5991655e46e 3e2ca73c-b10c-4db0-85d7-2d16c954e6d1 46f06dd1-0675-4f3c-a4b5-5eb98103eda0 03804f9b-df7c-462c-8984-8eb3a5ed4999 d6b3bd61-45c1-456e-874c-b3f60e1305a0 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EH-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3d6b8d3eb2b572e79b17883b178f4d73.bam 6389647308 3d6b8d3eb2b572e79b17883b178f4d73 3f581fda-a4c7-4395-bc09-f82083cfb865 f1e4b431-8c6d-4772-97bf-a3eb8b9cb390 05026179-b1da-411e-a286-89727b1ae380 3571b0ef-cc66-4852-b8e6-63efec5f5dcc VS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3PZ-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4b6c6fb5ae171eaf6dda053043de8b5a.bam 7075870632 4b6c6fb5ae171eaf6dda053043de8b5a 3fbe2475-29eb-40a0-8e95-d83e44cebb87 a37dd07d-ef81-4183-904e-1cdb09139d9b 3df6abe2-2123-4bfa-a4e4-88df5f940c04 bfda8ad6-deae-44dd-bafe-ba82787b90b2 JX 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXT-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 81b203b30b98899ae1decf51a58ed64f.bam 7605297920 81b203b30b98899ae1decf51a58ed64f 3ff1a6ca-8a65-43e8-916b-a3a256b6d705 81f437b0-6bbb-4a06-9346-176a287f83c4 5916af71-0262-42cf-af4b-eac830a8b419 e9030cf0-3baf-4658-8d88-a1d458589c4b ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CJ-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cbb7d920c8a4b85b114ac8a888501e12.bam 6937465492 cbb7d920c8a4b85b114ac8a888501e12 408a16cb-e7c8-4f24-9bfa-50fb9bd47648 d1169c82-e50f-40d1-914f-b4d8c93a7a3a f8f470d2-924f-41dd-92c5-516b0bf68e44 7e1eea3a-3ced-45dc-86e7-43867738bf49 C5 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LK-01A-12D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b757e4a6dd764dcc27c60bf847ab9c9e.bam 6365736424 b757e4a6dd764dcc27c60bf847ab9c9e 40b7e50f-d714-45c8-aee6-4c4466a09b4f 3d8718ef-47d1-47af-9dc9-55dec391d913 b79558c5-1db2-4b1e-a7b8-efbd19aa855e dca9ff1f-dd32-43dd-8fd4-446d014f5db8 IR 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V5-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 89516bf010fc0c2b4025f96acf566041.bam 8021831914 89516bf010fc0c2b4025f96acf566041 40d58c03-8233-47d4-80ba-eb98f82e4422 1585b406-687e-45aa-9da9-c028720c7370 d3ff2aeb-46be-4f54-8a8f-178eb921fbb6 47ba0566-1ec0-4d9e-946b-2a55eac0652e VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UV-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a42cf9c050bcb1bec27e974fab3aa06a.bam 9091856407 a42cf9c050bcb1bec27e974fab3aa06a 413538f3-9b31-42ed-8a67-da9a219d9927 ed87fce7-7e3e-4fa8-a1db-f3bd024155e3 c9e4bac6-0cac-4fca-a548-527deac5b880 1bfff514-ffc7-4c30-9f0c-5a6c82a4e153 VS 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3PZ-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e11bc9d3d2ef4c7c821c2aec1be17fc9.bam 7250725775 e11bc9d3d2ef4c7c821c2aec1be17fc9 41940673-6813-4767-848b-795ee6543edf 780c38c5-f1fa-4885-a0f9-ced48cf123c9 3df6abe2-2123-4bfa-a4e4-88df5f940c04 bd39c4c4-a4dd-4b2d-9f3c-608ca8708958 JX 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2H0-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f1f8656489af03f05d5c5c08c0937988.bam 7157944382 f1f8656489af03f05d5c5c08c0937988 41f660d0-65da-4589-8372-587eb8444a80 09be50c4-0ffb-4335-a35d-d39c5b0177ea c83c52f4-3815-4f49-8218-cf80aaa62e2f a5b67481-6783-44c1-a4a3-f29fc98b92c8 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X8-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 50484b4f784af19ebde553831555f7c4.bam 6867814910 50484b4f784af19ebde553831555f7c4 421d309d-957e-4887-8a35-8156a178b33d 51494d18-70f5-4ed8-bc72-0ba543ee4b44 57902b91-be42-441d-8807-a5ea9c21b214 43a084ee-96d3-4ca7-ae8d-127926493894 C5 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BJ-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BJ-10A-01D-A13W-08.2.bam 18458860696 9a0b070d6f791d9ec14cdc537a2d7be4 42615ad6-babd-4aad-a154-14d2316e57af 029ff7f2-694b-410e-a81d-f5a32151b495 7941d1c7-5319-4e8d-a15f-60b61cb68a9b 7b080a45-a698-4873-b41b-29f4e6e9d5a1 C5 SRS203032 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-LP-A4AX-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dbf7b346886da4ba5f34671eadb0f577.bam 6552397014 dbf7b346886da4ba5f34671eadb0f577 43bf4054-9cfd-453d-9949-aee77f7625ff c4d565a5-8321-4cf0-899d-cb5beb75f2b9 3223fec6-1d35-419a-8ee9-7c5885b8be1e aa734cf9-0c3c-4ce2-9c1e-3e3f9866c6d1 LP 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LB-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d6dc49434dd5870d9bef02b9cab743de.bam 5449075390 d6dc49434dd5870d9bef02b9cab743de 4427e193-75be-4086-ae0e-dfd1c85a12f1 8a67f3a7-427a-418d-b0bc-a6cdef6a5369 e7c7783c-1d0f-4f42-a4cf-518825e91d91 a753b6cc-2ffc-4480-a6c8-178780ae8be5 IR 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UY-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 449eed7027bce3323715e920e5d3ab85.bam 7323796734 449eed7027bce3323715e920e5d3ab85 44532d4c-7e37-4d7f-862b-91b6c99321c6 1121aca4-c49d-4646-a1f1-f57998599b2b a1b99260-8643-4cef-95a0-3853d64762b7 1153361b-c1a5-4ecb-a406-2fbe16680a81 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BL-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BL-10A-01D-A13W-08.2.bam 17538644505 0dc8ae6bc99e0e61acd1fe08f1a035cc 445b855e-bb89-4a14-8a36-ea560e432efe cb1606df-1249-4b8c-b3a8-2459fc404891 03c3fe57-ae85-4e45-9657-c3182ab5e124 58cc3290-b576-42ab-bade-fe213bcb14b2 C5 SRS203050 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9U6-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e32e632d5c96f9ee8af5863ea01d07ee.bam 6852476514 e32e632d5c96f9ee8af5863ea01d07ee 446bbff7-344a-45b1-96f3-6b1cc2653cd1 21698cb2-702a-4b0d-adc0-0bfe1fe697b7 98784bbe-e286-48df-838d-1a88040658bf 0172500b-599b-4f8b-9fc7-28750f5f97e2 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA43-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1f8d0f8570959fdd9f2ec329021305a2.bam 6724177812 1f8d0f8570959fdd9f2ec329021305a2 44806105-3227-4aeb-a9d7-1b0621a7db59 7889ff80-8727-4c62-b4b3-9c613eea8fbd ed74703a-6838-4f4e-9524-d6fb7b208687 f8b4a1c7-58aa-4259-b42d-fa7bcce0e463 MA 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V0-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 87ec4d0e3932a197da5f752a55658cef.bam 7182518154 87ec4d0e3932a197da5f752a55658cef 4552b6ea-399f-4838-8931-ab71f2656e50 b59829f7-b232-478f-8c50-7100d65bb828 a5885835-9473-455a-bac0-6fa43fa8a866 efe38c7c-556c-4a15-ba78-0505e35872f0 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A3LQ-01A-21D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b720be98b40721dbe6aa7e0e4d17cf36.bam 7795552913 b720be98b40721dbe6aa7e0e4d17cf36 465058a8-3293-4919-a0b4-699eff0a1ef2 e2b50946-df37-45fb-b26c-236b264da1fc 63bffdb1-bc08-4175-8be7-d7a056d19816 0959274f-e74e-4288-8229-4fb1a2bfc185 DS 2013-08-19 2013-08-19 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U5-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7bae8f15f3484752c64b955e7ca0b7f2.bam 8864580762 7bae8f15f3484752c64b955e7ca0b7f2 465f113e-8123-4554-bb4c-8ca73e759165 df2ec865-25f9-47e2-b56f-97e059071d31 939abca1-8bd0-4271-9a9b-666764eeb3b6 c9bb284b-49c5-47b4-8db4-fb542033fa2b VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RC-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9889e61fd24d1751f183dadea8e6d929.bam 5985970635 9889e61fd24d1751f183dadea8e6d929 46a613f6-3d19-43a1-8c8b-74c32259a23e 97f1a69b-1d71-423b-8bc9-a9722681d315 ac0ae100-8072-47cc-81d9-8b52b1bf9236 7515ed16-1cf5-4cf0-bc49-7f1885346eda EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GN-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ce23ab6e1031e220e267512426072332.bam 5227448421 ce23ab6e1031e220e267512426072332 46fe6e0c-9649-46eb-899b-530da4254a8f d8016a3d-d2e9-45ba-ac10-9587913f76ef f727fcb9-e457-4643-9468-f739133b7e9c eb5034e2-d4a7-48e0-9524-31ddd63c9d94 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EK-01A-12D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b962f9b999eff061b9e6d960bcd80d40.bam 4496061854 b962f9b999eff061b9e6d960bcd80d40 48daeba0-6c9d-4077-876c-fdd7bb324e89 77e9dfce-51db-4c59-8562-7e52b86671a9 d9c2ca21-f1a6-4cf4-be28-6c2492dd38e5 f6eb459e-98b3-437a-963f-cdb4a6bb2528 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U7-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e21f542d2a043173bac675ef61d5e37a.bam 9130506059 e21f542d2a043173bac675ef61d5e37a 491473ad-7356-405e-9473-ddf478fcf5cc 3fa20904-a516-40f7-afea-48295fcb1c7b 6d01421e-d533-4967-8422-97fbc0fb0895 600f26cf-89cf-4e1c-a89a-9d2cd5b694cb VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BN-01B-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BN-01B-11D-A14W-08.3.bam 9280117966 825242e93dcdf27d4fc4cd667c28fa50 498a9915-0cb8-4c32-8f1a-4f35d6277b7b a75ef01b-8448-4722-a6ae-de766b76c1d8 8a4da4f0-30f2-497e-8a7c-988fd6b813cb dd05713e-6d6d-4876-89df-69a905d24500 C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EX-A3L1-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 511b37bcb1e1cf5668c1e85b0a0fba96.bam 6331314389 511b37bcb1e1cf5668c1e85b0a0fba96 49cf4130-7c28-40da-9aac-5ecd3d63b1ca f23f9cb3-be25-4fb1-ad3a-8ac3ec0894e4 f5d90810-8c4b-4ced-9360-383e42cb54b3 89ad6395-973b-4011-bfbd-6759209406be EX 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VJ-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 02cf20d6b0d6308531b4232bf9a33fbf.bam 5224956092 02cf20d6b0d6308531b4232bf9a33fbf 4c26c02c-80c7-47dc-baba-c59f7bfa6f8a 19f2afb8-2dd8-4f73-bd4d-571cf4a16341 f0bb0d18-1190-463d-a0ba-839c2c776794 ac802945-3208-4d9b-b92a-6e16c64a06c9 JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MF-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MF-01A-11D-A13W-08.2.bam 16112562701 219aef923083a6586d91a51b02020f85 4c3b720e-f529-43cf-a97b-ff6c77e33233 e41f57b5-3eb4-457e-82f6-714267f4f393 4f514ed4-3be6-44bc-a531-210027846459 6a7206dd-eb30-4f05-b944-2e5529607d21 C5 SRS203116 2011-06-21 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A959-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 18c71ce4c3c5ee3ce6c92cdbbe1d2be3.bam 7081715672 18c71ce4c3c5ee3ce6c92cdbbe1d2be3 4c4d44f8-1a4b-4ebc-9630-c03c7b5dfe4e acc50863-ce77-4fdc-a75c-96559ff54281 f2bea37e-0d19-49e1-91a0-a4de4dfa2d35 60db8167-4ad6-47df-a9f4-d145195a10bd VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UZ-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 94672d84a200c78898dfe5221e0339c0.bam 6345392397 94672d84a200c78898dfe5221e0339c0 4ccc398a-4b38-481a-8d8d-e918a472a511 a132990d-a6fd-4bd8-9e69-aa2a990a34e3 6817bb3e-1f8a-457c-9ab0-31ccda8b6868 23154bb9-f757-434b-9c4c-43d03e2bf425 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V1-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4a457a9fb33c32b8414a86164b84bb5b.bam 11122150069 4a457a9fb33c32b8414a86164b84bb5b 4d5c0c9e-4cc5-4097-9308-346e916e160d 2d07b99d-fd31-4510-87f0-e5e954935b82 a6a07bc7-ab1b-429d-81ed-d7a890c88e51 457c7d04-b8ca-4478-9a41-d086261150aa VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EL-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1642ab824921436d7b1ab802490eecd0.bam 5035570575 1642ab824921436d7b1ab802490eecd0 4d6e3318-74d7-4a3f-8669-fe1442c64779 798ce125-3a67-4db9-88dd-3871e823f593 e0a5d99b-b58b-4301-b2dc-a767d90059b1 9e2b9edd-5fed-4283-a46f-a8185a911e94 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2IP-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build beb15f2afb7e3bb0bf5f36da0f8dff09.bam 7193334552 beb15f2afb7e3bb0bf5f36da0f8dff09 4e007859-bcb2-4df1-a3b3-4b767ec88997 25bb00b5-7c3d-4d0d-9acf-48af557a8094 76b54726-d348-4a1b-ae26-5b08d2effc9d b7a8b87e-4963-4e23-afaa-d2e391386bf0 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MK-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MK-01A-11D-A14W-08.3.bam 10305505131 e463383a9f44dd2614c91d01d13016a6 4e0bb37d-c331-45bd-8c6e-2422d13e9177 d5df1dc1-b3b4-4856-a952-2940fd7dbf00 b726f18b-b996-4978-9f27-b3a540e06270 4b90c14d-cafd-4b28-8494-85c2f5d8e80c C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9UC-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build aa148c21fb79b49a448aa23d2a57ef68.bam 13391027713 aa148c21fb79b49a448aa23d2a57ef68 4e1fcd39-5cb5-4349-a154-da805240c95f 40fed6d8-e5b2-42c6-a558-6dafe2baebd1 cca23650-1b06-4977-91e8-f35e73e70c48 a771eae0-b985-413e-a509-83c9593537b2 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HL-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build acb04fe701d68b14d4b7cf4da6fd707e.bam 11374077352 acb04fe701d68b14d4b7cf4da6fd707e 4e9b1948-b957-4ef8-90ca-6613fe5bc702 32898a90-051e-471e-9c2c-22f8ec5ef4dd 09329a53-d58d-4480-95d8-32043e40de6e 2a3cc87b-b120-49ec-93e6-8bddbae5c97c C5 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OD-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OD-01A-11D-A14W-08.4.bam 20301734842 f1a3557b85cf8bccfe863cf8fdf4fa16 4e9a26bf-f1dc-4206-a03c-57d3949f6886 4d31c166-720c-4ac4-ad15-5ff99668bbb9 ec609ebe-2db9-4b95-a154-512fdfa9038f cc4ca8cd-1292-4e11-9b9a-2b5e1c7ba245 DS 2012-06-05 2012-06-05 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AB0I-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f47b5cb8ebfa20dd6e69fa6261638798.bam 5857955324 f47b5cb8ebfa20dd6e69fa6261638798 4f4643ae-b82a-40ce-bd59-681d3d954f29 faca8e4f-3040-4f65-825b-a35ed25fb4e1 a4f13656-a941-498a-9ac9-f020ed559b35 0ae1ac31-e3a2-4d05-adcc-1e6ca13253ba ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QQ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9deafb99f73f9901911d9d255e3af856.bam 5392158122 9deafb99f73f9901911d9d255e3af856 4fc39d22-25f1-4890-a8f7-d32c8646a0a3 8ce3b878-d75c-41e1-9029-9b144bda3faa b12deb95-6aa1-49cb-a3c5-a711d42d6fb9 a29fddb5-b032-43eb-a56c-a736f25596cc ZJ 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WH-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 20e3861bb8e818b0ffe40d52fb049ea2.bam 4371378855 20e3861bb8e818b0ffe40d52fb049ea2 5085dabb-a7a6-4b39-9676-91e0c6fac4dc 3593a6b0-2918-42ea-a3aa-1855ded8c03b dadcf6d5-03eb-4090-bcc3-b9e9dc3c7e08 704a32eb-a4bf-4e79-8097-b3717c0c64a9 DS 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M9-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M9-10A-01D-A13W-08.2.bam 17372625771 bc2eaa57095d4c2efb849b55e76e2d38 50dc8870-072c-4096-be58-8d0cbaa1d8c8 f3d88d4e-4ef1-496b-bc30-4566c3d4de72 a3be445a-a592-4073-815b-47ae41f9c4a0 ae9477f6-7175-41ad-9090-4e61419d9b91 C5 SRS203104 2011-06-21 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EX-A8YF-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 72aa17bc6c02fbbd9e56a7258a0b6541.bam 6584646253 72aa17bc6c02fbbd9e56a7258a0b6541 50e8d76a-99c8-4a5d-85dc-195ca631e9cd 53f496e2-b2d3-438d-a438-c52d6e46ff2f 1dfb4565-81e1-4a1b-bb59-9b5629d6c447 16a684f9-98e8-4bde-a1b0-22a457edab0e EX 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BM-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BM-01A-11D-A13W-08.2.bam 16807723724 b7261a658c458636499209b855cbceef 511e8a00-9c62-4646-8859-38f036c8eaa2 021319d5-4f58-440f-a74b-e3a0159d35ec 7fb8e7be-4118-41f8-b785-5cbb0afdb8b7 57bc4710-6ac5-4279-b233-b65f42999a84 C5 SRS203053 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A7UI-10B-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4077c09ece8e51155fe72c578631b844.bam 6534485626 4077c09ece8e51155fe72c578631b844 52709fd3-0224-4659-b284-373fe4a89e5b 4ca4ef6e-ec77-4a6b-b909-56cbd4f83f57 ce5765fb-5221-4cbf-aa76-bb863803df57 60420a95-e90b-4441-9e9c-0f3f7df129bd C5 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EL-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build aee822f7fba859e2e3f6b8efafee1474.bam 5411083100 aee822f7fba859e2e3f6b8efafee1474 5363d291-10dd-4992-8890-a56d15a0a2f3 9bd662b9-e3a2-4600-8ef6-9a9f9fb7cd96 e0a5d99b-b58b-4301-b2dc-a767d90059b1 5eac7ca4-6e2e-4422-bca7-35d5a134edb5 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EC-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7ec1a3038b3843900b242ae63ffb5823.bam 6282395864 7ec1a3038b3843900b242ae63ffb5823 54301355-368b-4678-8958-88e1b407553f 6b9a4cc4-c650-4576-a0f7-2dc8e20465c7 afb5442e-0249-475b-8f82-cae4e0268ad1 664a6344-8cb7-4bc8-a0ca-cb6a8e6df6b6 VS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UA-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 635c9b9c634e616c417bc95bd6e14c52.bam 7638943612 635c9b9c634e616c417bc95bd6e14c52 54794104-7a66-472c-8b2c-bac2fa857864 d91aac7e-332e-4655-a73a-b2e86d61869e 60117b70-36c0-41bb-a9fc-85db8fa10102 6e70b0d4-79b9-4567-9c51-201672dc31ab VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EJ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4ea89936ca0c4c3bc6c9322ad1d3f27c.bam 5761988010 4ea89936ca0c4c3bc6c9322ad1d3f27c 5501f8b0-089e-442c-9f2c-71987efb8ca8 79f58aa1-1b09-4dd9-8775-8247af9bcb19 2e08a89e-4035-4782-b54f-f98eef5db80d 1bcb65d3-f991-427d-a72f-702b398aeaff VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A5U3-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bf62acc84b8cef9bbcb634d1d967acfb.bam 4851402390 bf62acc84b8cef9bbcb634d1d967acfb 55e1605f-dccf-472a-9300-8a298bffffdd 9fa979c3-9393-464e-a0b4-56b84ddfca32 1399d31d-9d5e-441a-b400-8b8a92a6ff8b 7f1b3a4e-c07f-4d59-8122-922b1d49046c LP 2013-09-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A8JM-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1a9afce7ce5570d9537b40f8c7363967.bam 8962319259 1a9afce7ce5570d9537b40f8c7363967 56688d43-5e9e-4150-8800-acf04a6ecbc0 972aa92c-48f9-4406-b205-8c896373c1cb 1d730565-ffa9-4cc7-a713-c4b5b7bbb29f 916c873b-3eca-4ef1-b211-5c953dedcaab MU 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A449-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d3a09a4dd651053171490c9bb7c81697.bam 6826009406 d3a09a4dd651053171490c9bb7c81697 56c9e975-728e-4198-b6e9-e837865c43da f953aee9-2d96-4247-a737-20f021934cf3 eb0eb159-732e-43ff-a402-7f2d9f67daa8 6e2d25bd-add2-416a-8174-1da8849f39d2 EX 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CO-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7a114a64668803758f5c7ea0f58e981f.bam 6134017310 7a114a64668803758f5c7ea0f58e981f 57039b85-0b5f-41aa-9adc-d750ecbad9f7 4da77a40-feeb-4eb9-8eb0-ac7e102e3814 ff3808e4-eece-4046-819b-fe1019317f8e a398e3a5-cc4a-479c-8393-54a0f74a3395 C5 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AB0H-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ff333b0f3f458f3453dd5a05f56777e5.bam 13447744593 ff333b0f3f458f3453dd5a05f56777e5 57ca3a19-8b20-463e-89ed-8055c44d44f0 9ce5e5f7-17bf-4a70-939d-7cde2730fb85 f0daf315-8909-4cda-886d-a2770b08db94 33ecb03b-be5d-4735-bf25-045c79ae3462 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UQ-01A-21D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 37df2617e853ab26c5ffcb5e6b184a13.bam 5878585710 37df2617e853ab26c5ffcb5e6b184a13 58469867-fa51-4836-b94b-ee9acbdf2fbf 6c5c2186-8209-47d0-a9b0-8b09d975ce48 2c600a58-98ed-4572-9b6f-edba2719790c 4b9dfe4e-b74c-4eb8-82a6-1cf044bafa1f VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PF-11A-31D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d2bddc685b6816e01206f01da2e7670e.bam 6099442046 d2bddc685b6816e01206f01da2e7670e 58765817-5a58-43ae-a276-67995dbb8643 a1610997-c7f9-4d07-af1c-a7fb6e6bcc5b 1451821e-dd49-41fa-a52e-32f8524ffe82 1ab44824-1c89-4362-b3e1-6e9725a23dcb UC 2014-04-21 2014-04-21 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VL-01A-21D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VL-01A-21D-A10S-08.5.bam 12900718811 f2fe5a1d9460819b1d2b18a9df2265de 58b2d924-a81c-4353-be12-8590bcbfbab3 80482bf1-3ae3-4e8f-ba04-21192caf30d5 dfd30f94-19e3-4838-95df-14a3763419af cdf4ab19-f243-4efc-a5dc-8253cbe48845 DS SRS206894 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A2LX-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f0e926c6babf60f73aaa986b525e7402.bam 7043709459 f0e926c6babf60f73aaa986b525e7402 598ac1e8-74cc-4a87-bfb9-ffe758745799 a1c64056-82a4-41ae-bb30-0aa3e47d9040 b82f4c6d-530f-4b0e-8f33-995633cb254a 41bebea3-11c2-4748-8e60-082cfb8e0251 C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA41-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 47dcb3418252fb3c645283db59787599.bam 7103581300 47dcb3418252fb3c645283db59787599 59e65f08-992e-416c-9e04-bda13b86e478 9c8035e8-ec3f-4980-a8e4-1c40aecc1587 81658ce6-d4a9-4ee0-ae8f-cf2fa8485701 5efbe4e8-9908-4ca2-b4ef-22d7a4213f19 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HG-A2PA-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 42f069766b5d12f6247876ed415fb98f.bam 5420372914 42f069766b5d12f6247876ed415fb98f 5a657cee-8f42-4887-ad29-7f28b11a6ae8 8c0459ab-a4c1-470b-9548-f3ee12a7d7aa e2ff7cfd-a101-45b9-895f-26f403e7bdfb 235dbd13-5052-4e19-9c1c-a72a1a9a79ce HG 2013-08-16 2013-08-16 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PK-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9a4af322fd88e558de2f60d170aae78a.bam 6616225286 9a4af322fd88e558de2f60d170aae78a 5a7b5039-dc21-4961-be7e-baf8de61defe 607f3f40-63e5-4182-b77b-2a2b11991004 0809ba8b-4ab6-4f43-934c-c1ccbc014a7e 8ac65e67-e498-4771-b362-a76c57bb5895 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1ME-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1ME-01A-11D-A13W-08.5.bam 10525156560 0c486764d584abd333778f240a035160 5a789c7e-e3a2-40bd-ac32-b2bbecb57b47 d61d65c7-571b-4df4-b260-91ce59d6c29c a0598331-79e1-418d-b50c-fd945b843506 663ef1fc-5ac6-4f4d-97f6-485cc0086d7f C5 SRS203107 2013-12-23 2013-12-23 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A905-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ca43495bb727a670f59e69be3092a099.bam 6454240805 ca43495bb727a670f59e69be3092a099 5aebc9e3-a73d-4e58-b996-250cb40b20a4 a6723266-843b-49aa-8b6e-90038ffc4544 c99f476b-e8b1-4cdd-9164-0da450064886 b7d145d4-5cda-4455-903d-b0c216726ff6 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U5-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 624abc2d9d07feb213600db0ee2dae24.bam 8022410823 624abc2d9d07feb213600db0ee2dae24 5b36eb44-a5cb-4c03-8d23-f21795087b5a 2b2e0f5c-6d86-47b6-b049-833e2693b19f 939abca1-8bd0-4271-9a9b-666764eeb3b6 cab5da46-f163-42eb-8ba8-43ed69e8e518 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A3LQ-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7d888bdc09bdefdd22f2354702da0554.bam 6730211790 7d888bdc09bdefdd22f2354702da0554 5b9b223f-1c25-4962-818c-8cc185b6dedd be684ac0-dfad-48b1-a133-e2e5873099b4 63bffdb1-bc08-4175-8be7-d7a056d19816 44f7a662-8b47-4d2e-9f8f-6ceea06b54fe DS 2013-08-19 2013-08-19 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QH-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b40970533c609c046b9add42ea7de1c0.bam 5402532253 b40970533c609c046b9add42ea7de1c0 5bb7f67c-39db-4b38-a691-682e311f5305 d937e490-dbaf-4d08-847f-747c44affde2 c4f61715-ee58-4799-a5f4-0f5e27c4093d 400eedf2-5115-4771-b7f4-e82ace6d31be VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VN-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VN-10A-01D-A10S-08.4.bam 16909217937 8f91f72667d0ce83453a64dd0490cf71 5c31254f-f5c2-4532-aeeb-381fcbdf82e9 9feea440-0b98-4652-98db-817e1bb3b066 f8d342f5-9b92-42e1-8b0d-0876cc26965d b60fa473-3b87-4be0-8a28-9f0ebb0c25b0 DS SRS206918 2011-06-08 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A7X3-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0371117322ecd04c8dec018775d994d4.bam 6614980325 0371117322ecd04c8dec018775d994d4 5d9feae7-605b-499b-8872-88fc39f157e1 fb738c13-efff-4d60-a1a6-fe124e35b680 4ed1616e-8c62-4104-bcbe-26d7059f04d0 8f76d057-71dc-4ae8-beb6-fb3fc6881258 C5 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXD-01A-21D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 408b9acdb3d5bc266d1e1baa510a64cd.bam 4561338115 408b9acdb3d5bc266d1e1baa510a64cd 5e2a064f-3b55-453e-970a-018b94bd411b 7ce6c17d-3e15-4d79-af76-9c486d79a7e4 af33df2e-9737-4f63-952c-858a70aa589c 5f1cad28-473f-414c-b72c-c93707300e57 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RB-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7bb707e4e7fca1165ae94cc31b323cf8.bam 7332246281 7bb707e4e7fca1165ae94cc31b323cf8 5e806371-3c2d-4824-a54e-f3d99a9e00ed 678d2d3e-04d3-499b-bc79-158fc6c1ff7c f92a994d-b080-42c9-966f-34c1000865e3 f062bd00-cb9c-4648-a917-7c7ca0aa17a5 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A0TN-10B-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A0TN-10B-01D-A14W-08.3.bam 10221155456 a9bc73739ddcb7e6fbb69c789dd1e3cd 5ebbcb58-658d-441b-bd7c-36c2f746d173 7a14d340-4758-457c-8fb0-6239640621b8 14c65927-b9dd-4ef6-9917-db7bc431ff2f cea46e75-27f2-4349-a4a2-9460cc7eb4d7 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-HM-A6W2-01A-21D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9318d72628b065be528a05763ddd672c.bam 6057993815 9318d72628b065be528a05763ddd672c 5f807798-63d1-40e8-bfb1-46574de29125 77da5f5d-4036-48c1-8992-651b8c0ed331 929505f7-0270-475e-a9d6-00bf38dc78ba f403db48-de4c-4b7e-a786-0b7ce0116f80 HM 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5O9-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3242b56ccde29c9ebb61fa2f32f894cf.bam 5269354254 3242b56ccde29c9ebb61fa2f32f894cf 5fd3cd36-3f05-4a34-aa80-bfd6d1a8ae79 ad11f7bb-98ef-4d53-8c5b-703bc234efbe 1636242c-12da-412e-a362-914a20add708 614a31d0-9262-48d6-af28-57e81e50eb32 EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XH-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 934fabb464c22c66f6894f9691dfc4cd.bam 5315472944 934fabb464c22c66f6894f9691dfc4cd 60277602-a6b4-46fc-bdea-c713c7194a17 603d1642-1351-4f3f-8148-ab0402ed6634 183e8d87-3476-46bc-a989-ed4b09809227 dd752dce-0439-4c6d-a343-f0cccf46bbe1 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V0-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4e5e7fff018118e1fa05431a020ad4e3.bam 7047299759 4e5e7fff018118e1fa05431a020ad4e3 606dccde-0b0c-4da2-89ca-cf486dc81f41 97b62207-235d-43be-b417-1e51785c1287 a5885835-9473-455a-bac0-6fa43fa8a866 07a9ae9e-fce3-4975-8726-a3b5e9c2ff71 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KK-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dab289b607224ea86988f85cd5322783.bam 8183677727 dab289b607224ea86988f85cd5322783 60741dd8-aff0-41af-8369-7ea238d64670 f42b0b3e-1c17-467f-8083-e09417c6c424 8dbcb17d-0396-4faa-9b32-8e2566424bff 41a61f23-70c1-47ca-8260-96def13998dd DG 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAX8-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 76e8bc4961b1f2d27b01308c5d7680d3.bam 7600898141 76e8bc4961b1f2d27b01308c5d7680d3 6122096d-26e6-4274-b839-c0b353c6cbb9 2b7b8768-238c-4403-a8b0-682fcfc651d1 b5f0e361-d67d-4fa9-9916-43623dafb10f a6024a4a-245d-4d7e-9fee-96dcb3fea807 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OB-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OB-10A-01D-A14W-08.4.bam 9926658304 e7a6a3661524b8f9bd7ab28b9d654da3 61625c34-2330-49f3-b994-0fdd7e816229 dc746c1c-de30-4019-9ac4-30d7af31cf07 29a48c93-bade-4346-a901-de35a6537337 2bb7d753-ea41-4f5c-a71d-bbb4ad9cfee5 DS 2012-06-05 2012-06-05 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A2QG-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 24a3a3d6b57c70bd23590c3ffde8bfee.bam 7090821896 24a3a3d6b57c70bd23590c3ffde8bfee 622d995a-b18a-4b1f-a67b-9bb92f6228dc e99dca04-ac4c-47f2-8375-e5b63f1e11b4 d5d8a818-d689-4c6f-96b0-13f2cb10c3ca 5eb7ed10-4b04-4405-8bd6-4d51164b08ba FU 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RL-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 013ee840e6ca60d7485b6503b3897904.bam 5806068300 013ee840e6ca60d7485b6503b3897904 6262af3a-1e89-4d0a-94c9-6c8936bf27af 6ef4b38a-ded9-4d85-bdf4-bdfa495e235a 61eb08d0-ea01-45e7-884b-ac3d6070172a d4a4cabd-fa00-4dbf-a25b-b3635fc0ad9a EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HG-A2PA-10B-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 665ee14d2c93534536cdeae6bc56e4b9.bam 7997903701 665ee14d2c93534536cdeae6bc56e4b9 626cb47a-0cb2-49a8-bfd5-ae5365e0b39c c8202693-7be4-42e2-92cc-0cb1899696e4 e2ff7cfd-a101-45b9-895f-26f403e7bdfb 6bf28f80-8eb4-48e6-b63c-6fd68f41f42f HG 2013-08-16 2013-08-16 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OC-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OC-10A-01D-A14W-08.4.bam 10421723837 ddb0393c16f1a027c21442228d37ce72 62c1a582-72c3-4567-b4e1-2611e0cc1503 72615905-823e-4ace-976e-82a198791120 e711b88e-fa0e-4781-8549-7a53ed3a13a1 9f3d6908-b1c1-4b0c-94c8-6ff459d689cc DS 2012-06-05 2012-06-05 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A439-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ab95954c786d50b2aecbabd47af94172.bam 6383368881 ab95954c786d50b2aecbabd47af94172 63078f3a-9cdc-48a9-bf21-9d7382d80a52 46278bf9-39e9-4f56-9f38-eb1d0fec4168 3edb62c1-25ad-4deb-a005-e881a887d06a c45d416f-8f6c-4845-9030-4019c4120bc8 EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BE-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 93ef4757c01d2343abe345b9b13fc908.bam 7089116299 93ef4757c01d2343abe345b9b13fc908 631a907d-cb36-4d98-a862-bd042d9b8f3c 927cdf95-d9ff-430f-9e97-a6eb590774bc f8ab17ec-c365-41a6-a4bc-36653e84bce5 751aff47-42c7-4695-8d49-c8a97be7a16b MY 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A852-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c8622ce05d8ace4b4bb01922cffeebd5.bam 5662862745 c8622ce05d8ace4b4bb01922cffeebd5 6331d44c-e0f5-474b-964e-822bd437f9ec d99b5656-9672-42a8-8902-6ee10c559373 7cc8f5bd-d2d3-44e9-aff6-fe9c9c805938 b3bb3d33-1e7f-4892-a3db-a291108593ce JW 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PD-11A-12D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e91dc3ff12b0745f59d367932802fdcc.bam 6294554928 e91dc3ff12b0745f59d367932802fdcc 634310f0-dfaa-4544-9a99-946330000e32 2825b631-715e-4dc3-a092-3b9f915e9e0c 0f18ef74-019b-478d-aecd-60cc715bfdb7 352fb7f2-0ae2-48ac-bea2-356f5452243a UC 2014-04-21 2014-04-21 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EG-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 670590d93803f9d41ef58121138c1ecf.bam 7578718284 670590d93803f9d41ef58121138c1ecf 635189b6-0215-4d38-9991-990f2478b129 1e8e2964-58d9-4928-ae88-f6269d4cea75 b0b293c1-bd7e-4ba8-9f44-47398488ef2c 9bcaf270-a900-4e58-ac21-73fee4ce2317 VS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AV-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 40eb46a5a4f7433067604f7fc5a9ebbb.bam 5383191328 40eb46a5a4f7433067604f7fc5a9ebbb 6358e099-f8d4-46e3-9745-b5d6e85695cf 3019b763-0f7e-4424-bd69-80f6c130246c f241d6b1-2c32-4478-8f8d-8c746464f7d1 ec08f8ee-da6a-4cfa-aee9-07754224fc58 LP 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A852-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d933de8b68cd1035fb53ab116c2ca2cd.bam 7587936274 d933de8b68cd1035fb53ab116c2ca2cd 63b3e05f-b4fd-49b4-aec6-893c6683f2c5 0a1ed0b6-1b6d-4e27-b5eb-5fee4218c7dc 7cc8f5bd-d2d3-44e9-aff6-fe9c9c805938 81e45607-232f-4e30-aeb4-4d927f7ed00f JW 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3EO-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 68b921f39e88c6a51c73c4e5574b10e9.bam 5405870854 68b921f39e88c6a51c73c4e5574b10e9 64141777-8cb2-442e-9ea3-4871b27e052a c2900e30-5120-4349-8520-13bfab27dfc7 b7f2958f-256e-4c30-9c61-11e76ddb36ba 59f1684e-5631-4e1e-a1dc-91739f7c159c FU 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A43B-01A-81D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7342659578b677706b3a29a6963eb35c.bam 6429027622 7342659578b677706b3a29a6963eb35c 649a3c90-c2e9-4cd7-a3f2-1f06bb9d0492 4d669929-58fc-40ed-a627-87bb4daa1425 3265f9c1-7242-4c7d-b4ad-b6519ee94f84 82d18b6c-2fb8-4d20-8c5c-6e7528c88cb5 EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UM-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d4e9dbf2b0cc19078a3a9b36bf845d7d.bam 5920241662 d4e9dbf2b0cc19078a3a9b36bf845d7d 64a19e60-6d8f-484a-82f8-a8b069112bea 19b6b5f6-a429-4ec3-ae3a-9d63fa18abcb ee2c9743-eaa1-4f0d-8d35-e96686ac3913 3c3c8768-36f7-4611-b6b3-d6b8126f5594 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RD-01A-12D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e667d86f6e6edd00ae276de743811325.bam 4429950103 e667d86f6e6edd00ae276de743811325 64b31941-6e09-4973-814a-ee906f700522 b429a4aa-1a29-4e26-8236-7dc5f7c87b23 16363ef7-899d-4927-a74b-e7c03b3d8af1 5690a425-ba49-4bca-b5ec-461bd5660be0 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OD-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OD-10A-01D-A14W-08.4.bam 9903566394 a60d75ec4a76ec9f5a5545b093af3382 64db1e73-afd4-47cc-bb31-4da9c238a713 db7fd57e-784f-4c85-9869-211a456bc342 ec609ebe-2db9-4b95-a154-512fdfa9038f 49aab948-618a-4d11-8cd3-5ae9cc9c7130 DS 2012-06-05 2012-06-05 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXT-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 90cb812fb4ab075eb970cebd1de3a27c.bam 5812374868 90cb812fb4ab075eb970cebd1de3a27c 650abe01-4046-431f-97a9-c53ce37dc7b9 e95e9013-0985-415f-ba6e-e361014a6e99 5916af71-0262-42cf-af4b-eac830a8b419 d0bec1bc-3654-4bcc-b0fb-7fbba510ed60 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VH-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fce742dc759ceae6b206e2a5fc039e1f.bam 5493694356 fce742dc759ceae6b206e2a5fc039e1f 6526f454-f0eb-4231-9e68-b96706e6722f 0f832ad5-ec72-488b-b55b-1659b733f490 6813c53c-b256-4115-ad90-24d75328779e 05ef91d4-13b0-48ff-9758-6acc179f9e8e JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8YQ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d9e2c890a3408b461b30b5ebc4339d06.bam 4194081709 d9e2c890a3408b461b30b5ebc4339d06 656eb7b7-61a4-403d-9b9d-075fc8ab0694 632e586e-0f37-44ae-9c3a-0b7dd8334df4 de3cfb81-25c3-4137-8f24-ad8aa607c158 787995c1-79ba-4fb5-95a7-b6df8c92c7d7 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LS-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1a238a54a8ff3daeb8deaaf3e8897f2c.bam 6555045257 1a238a54a8ff3daeb8deaaf3e8897f2c 65d3092e-be9d-4501-9b48-840e6d1dbb45 64058b60-93c9-418c-823e-77e4bcde4034 185e1520-92ee-4af5-af15-fbeefb352c99 82d8e275-5d14-4cb5-9c88-2d0e3f863a27 C5 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M7-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M7-10A-01D-A13W-08.2.bam 15859117003 91c855a7fbdddc8325d07d9c00acf07c 661a83a7-1210-42f3-82f6-6615ddcbea92 e6d2e514-e792-4e8a-a34c-1cc82733576b e8e16aaf-3621-4ce8-b02a-7893dd656e4d 3273d76c-d96f-4244-a491-ab9de60f3704 C5 SRS203086 2011-06-20 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A94Z-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 776a530122b90f606c6f4da768dbfa18.bam 5508713673 776a530122b90f606c6f4da768dbfa18 673616a5-76fc-4dbf-b7ed-ac63346210c7 8e713928-397e-4b3f-b6c1-b9ee61fa6b62 69baba9f-19c2-4947-95dc-0dd3412929ba 2d8a0204-0bb7-4691-9732-dca1dc2048b8 VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A69B-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0d5894c918ea799b1b3346280d36a9e3.bam 3618083732 0d5894c918ea799b1b3346280d36a9e3 67a25f42-2245-4d67-8351-8338f4a85ec8 3ff4c312-9503-4618-ad53-f68e8241be5c fb4af6b2-4bed-4dbe-9309-29f59ed30fb2 526a955c-0312-4471-9866-b32dc3a6c4a3 JW 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UH-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d403f4842fb79683464b18379bfa09b3.bam 4922555378 d403f4842fb79683464b18379bfa09b3 67ac4ceb-6740-4515-8be5-47bd36da2b8b 7d3b5119-2267-4a8b-a4af-47af3471c597 8328925e-3324-4188-85f1-6ffbf819d9e7 e7e2ed15-f966-4177-b02b-76ae2a31fc5e C5 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OA-01A-11D-A16Y-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OA-01A-11D-A16Y-08.5.bam 21015596534 66ae50f1c3483ec1c60f7da1049bb7ee 68ab23f6-254c-4330-8aa9-91c63d445f60 e3aadb02-a271-47dd-b809-f85e52506c71 46c67dd6-8e66-411d-ad05-95daa9005eb2 a43a5600-8d5d-445c-9f52-a6d994f86ecb DS 2013-03-25 2013-03-25 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXF-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build db5ec8777e64c40a32572b47b5eb0174.bam 7049425360 db5ec8777e64c40a32572b47b5eb0174 68c7fe19-5e83-4a91-bdfd-d2f44689f566 a248ba68-3c19-4b13-95f5-ec5ac320be8c 0acd1e47-1099-469b-a6d4-e00db47f57a9 cc50cf9f-0c1b-437e-9931-b4c3f8309e12 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A1QS-01A-61D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9cb6bab021af7360ee2c1ad8a1f5e309.bam 6471637358 9cb6bab021af7360ee2c1ad8a1f5e309 68d29f33-5fa8-47ae-887e-d9692b2ff8f1 b0b813af-27fe-4fe6-843b-18f877023df1 6f9d21c0-3b88-450d-a249-3e9bafba2dfa 8389c79e-164e-4462-adcd-364db3afb463 EA 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2M1-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6467e84cfdd892e036ed1a87a2f28f43.bam 4635303110 6467e84cfdd892e036ed1a87a2f28f43 695e335f-e009-45b2-9c22-b6140e9bef2f a8afa2f2-f5c3-453c-9f5d-2ad6d3a20cc9 8911c80c-c903-48e4-af5b-ffedef9abc47 d54090ca-8f9b-4f5e-ba79-92cadb9bd6a7 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QA-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a5b63366faca762acab97313e147e992.bam 5907351223 a5b63366faca762acab97313e147e992 6990115c-4176-498f-be14-7b67764b5770 864775dc-7718-4559-88fb-e5b9517d673f 1a3d5555-7013-4f06-878a-98944f075b63 652b235d-0463-42a9-a650-011fd2568e5e VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R1-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 01408ee8add6b97e6bee1f2f7c6473eb.bam 4000926071 01408ee8add6b97e6bee1f2f7c6473eb 69d1d24d-0a55-48e5-9b77-ad3c9215520e e9ae2a3c-f934-43a6-a00b-ea04105a5926 f93ccd2d-3c77-4bd3-8cac-5203bd57735f 85e88e38-048b-4085-ae0f-328645a5182b Q1 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MN-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MN-10A-01D-A14W-08.3.bam 10565592294 66221487122850011ee8ff99f54a4736 69fe075a-0716-4e21-bdca-098b3140e5d6 b7c6b71d-1fa6-41bb-a7af-565e18048458 287ce10e-31c8-4b10-9858-6e45451dfbe4 d3edd964-c993-4e10-b3b1-06e01b3190cc C5 2012-06-12 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-MA-AA3Y-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2d3c3fadded17e86461d4d881f05abd8.bam 7810972427 2d3c3fadded17e86461d4d881f05abd8 6ae9e5ee-7fb4-477b-b40f-84d777e5eb48 72f1576b-b4a3-49d8-9153-88c52e5b6cf3 2f261704-d600-4226-90d5-d51ba416b55c 5048fceb-4c22-464d-8f66-f9b728f7e5f2 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2M2-01A-21D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ad170d2c078f01cacaa9f6a093cd9259.bam 5276326620 ad170d2c078f01cacaa9f6a093cd9259 6af3c175-ccb2-4e9e-8788-6651a2783ec8 7afa937c-7f6b-4956-949f-a31742f80ccc 77d53d4d-3b07-4c79-86fe-6ac812968f39 6a0afe74-ca6f-492b-a5a9-5fe5ee939722 C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KM-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 07128a57d05e0f4f5833432195ccb260.bam 6673663955 07128a57d05e0f4f5833432195ccb260 6aef078e-970c-44a1-ac31-bdf8d91f5f95 83a1e958-4f39-443b-a1b1-4712d0460aa0 e87fadbe-c58c-41d1-b413-8cf6ce70ce94 f7df9cc3-f41f-4042-861b-f7d7f2fe50c0 DG 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAX4-10B-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b98ca5183b3efff3fd38198f30a21514.bam 6979625486 b98ca5183b3efff3fd38198f30a21514 6b154aa9-3845-4901-9b5a-001c31059798 4203d9c7-4fd5-4b8e-b7c0-5a81f69f591c 13d72130-604c-4d79-95cc-53c2e25d91b0 f55d1776-85f6-43a5-9794-bc096e289873 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2H1-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b12ed5a0c4cf0634340d9ee13ad1b5b5.bam 7873610071 b12ed5a0c4cf0634340d9ee13ad1b5b5 6b82ac68-bcd8-442e-995b-befaa7d7deef 8e18b908-26a3-4f67-9d6d-cfc889c2ec18 690a7b2a-7dc5-4504-9372-70c8b55e81c7 14fa244b-e920-46bd-8df0-849846c88344 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EI-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a1ec4a4ed7813bcaf6c79940b3a0f0b9.bam 5444838277 a1ec4a4ed7813bcaf6c79940b3a0f0b9 6bde08aa-6358-4bb7-a60c-a2fefe7bdf56 4458fd7a-2b8d-4f88-8672-8cbaa6fa6423 7b228c3b-e604-41a1-9b76-8dd3d5a59ffe 5224e070-070b-42d1-b975-80d7f084d584 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RO-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2e1cabf2aa171e09c6176e5f7480559c.bam 6774758394 2e1cabf2aa171e09c6176e5f7480559c 6be21635-81d7-4795-b700-559e2174afc1 24177940-975d-4c45-9c43-7862c8e036bb c996cffb-8132-4973-987d-143274b6a081 31ea30da-ab0d-48af-bb1c-58f99ab033a9 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3Q8-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 91e3f223ac91c7ff7dac4e4a048c1cbe.bam 5509289310 91e3f223ac91c7ff7dac4e4a048c1cbe 6c55be14-181b-4bb6-81fa-70241a20dba0 8492e084-f9e1-4bad-9143-ab05dca4dc2d 34629eb8-0c5e-4910-8e13-bf7d6a1e337f 28954012-3732-40b0-8ea7-f48cbeef4105 JX 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R3-10B-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 21e6afafd0877c63d9a67e24e9ca8769.bam 3890352720 21e6afafd0877c63d9a67e24e9ca8769 6cd0a612-22d9-47eb-b723-f42878510825 7956e9b1-d201-4a83-8ca2-d1ac1e723685 73aa428a-4288-45f8-8a53-cec173dcc61f d5e8c9b5-3a1b-49ad-9e3c-84c4688264fd Q1 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AU-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 89a6935fe90397a8bebc50fd695f1a08.bam 5960856838 89a6935fe90397a8bebc50fd695f1a08 6dae42ad-570b-4f93-981d-abac1793a14b e6f97122-0a11-4a7e-9332-9aaf33cb0d38 e15d92a1-6925-4b58-a494-d6f665f67b83 183cd482-306b-4989-81c2-97a1ec2affe2 LP 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BD-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f1bd22a2c47b6b13f2c4a86b55e41647.bam 6015278792 f1bd22a2c47b6b13f2c4a86b55e41647 6df7c08e-c72c-40e8-bad7-ffe1bf20d9a5 20edb89b-cf05-4701-9da9-95da8e6b7038 cef2efb2-93cc-4bdf-a343-9965e7e0432c 524ae77a-ca2f-4efc-b56a-f605c141cc73 MY 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A97N-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2c104f047726df925f3c78498120769d.bam 8603982618 2c104f047726df925f3c78498120769d 6e13791a-258f-4a39-90f3-5dbeaf822d65 3dbefeef-e2de-4b14-9496-307481211119 87e701ab-acfd-45f2-a12e-323c94e5f3d5 b7ca7bff-a333-4996-bbf0-74063d1e0472 EA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXJ-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1aa0eb146fbd8f2829c69f151471c130.bam 8130478899 1aa0eb146fbd8f2829c69f151471c130 6e6bbd4b-1079-46e0-bfe2-864c5a91c80d efb889d5-ed53-4274-83c3-19dc2377c565 6b60bf8e-29a1-4c6b-9ead-aea4ddc99064 3037a277-8907-4058-81d8-a4a09f8a2b14 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3TX-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e2f63cea8d1081422440c71721801e5a.bam 6141303870 e2f63cea8d1081422440c71721801e5a 6e7ebb26-d76c-4f7d-af68-2e062ce68b74 d7b951ed-7d8e-4c35-b458-d119cc5e3fd7 b75644c2-b515-41ce-9b03-842ef5208a17 d9146847-1e6a-4963-9bc2-c2041b36a84c FU 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KL-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1c856226c74b31ef9fd30e3c2c3c6f75.bam 7284413239 1c856226c74b31ef9fd30e3c2c3c6f75 6f4658ea-726c-46c8-b350-82ef94d153aa d4f854a5-4255-4c57-b449-df4a3278418d 2da977fc-8b46-4c40-9636-b12fd36a98e4 569883d5-68c2-42f1-b6b1-25d12f99cb65 DG 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73S-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c3a175cbeb6069575b4bc8680426a18f.bam 5568244647 c3a175cbeb6069575b4bc8680426a18f 7183d0ae-151a-494e-8e6e-2e31df17f8fd aed21183-ab50-4241-a9e5-cf1f53b0553b b0f63819-fc86-4981-9d92-0115c6de3bce f2d717d6-a3ae-4595-91b2-73215abc71f9 Q1 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-WL-A834-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e59cda4e88beb5e0635fd815d1b973e2.bam 5213422214 e59cda4e88beb5e0635fd815d1b973e2 71a5091c-7b58-41a0-9c87-3122f53aec9d 25cea399-9ddb-4c2c-9fa3-b0d9895a51db 48d81b1e-cd75-4b55-a0b2-c331be2a88ae dbfbcf94-84bb-47f3-8373-96fadb932d3f WL 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PG-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 561f94fac36f7b09d9dd70290f9558ca.bam 8047074594 561f94fac36f7b09d9dd70290f9558ca 71d3b1c7-7d27-4d21-b9b7-2c91875d68d7 f0a71de6-e7f8-4670-a438-52b1f1fcf97e 5194a247-cfee-4c11-9475-cf5521a8c6e3 b36b549d-2031-47b5-ba70-a3ea88fd5c39 EK 2012-12-04 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PI-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 20efd5a82fa9bb931ef431c1fd6aa4d4.bam 6157910190 20efd5a82fa9bb931ef431c1fd6aa4d4 721a9046-8fa8-4fda-a027-766d4832b597 259fea6c-0386-431c-8735-27ba978a28ee bfd82578-8b60-4c23-85a1-fc14a1cf5f12 e42a980a-8189-41ad-b5ff-10181229f8b2 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EJ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7f0d0f8d17f1027832aab4ca3fe1153c.bam 4172448257 7f0d0f8d17f1027832aab4ca3fe1153c 7279e015-b47a-464e-a9b5-db2d54e7f651 67382383-619d-40ff-8932-fab7e8855bff 2e08a89e-4035-4782-b54f-f98eef5db80d 97bd18f4-cee8-417f-8fe2-ce55e4a761d6 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HQ-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ead15df73e612c37528694dc3cdde95f.bam 9701334205 ead15df73e612c37528694dc3cdde95f 73aceab4-92a0-46de-8294-67240d197922 86b36e7a-53f5-4f0c-8c94-3d013d4a1fa2 6bf00b63-89f8-420c-8d36-f680fb0908b1 7423d8ce-ecdc-4a4d-9757-74d543d9eb6b EA 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MQ-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MQ-10A-01D-A14W-08.3.bam 9564281419 44996aacc83cbc60fbf699be2b24a579 73b98e82-0aa5-4a32-8bba-772d35755f2f 0499fa6b-957b-4b13-8979-a30ba4dcf1c8 eb59cf69-1997-41b9-bf69-69ad7da292a1 45e629a2-edc8-427a-ad29-05d6db9b0e04 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A8YR-01A-12D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3f02733722fc08b708d447abf2aed9d9.bam 5392999874 3f02733722fc08b708d447abf2aed9d9 741f2e4b-a98b-4125-b4b0-fb5db1905692 cb8557ff-6287-44b0-8ba9-4c8cb8d85f40 be8b1c78-8cb1-4bff-b1fe-71ecdc454c94 f6f42f6c-a61e-466c-8658-fe77ccbdb3f2 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2M1-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 98fc2f7cb337eb55aa2a74d33b736b84.bam 7765604151 98fc2f7cb337eb55aa2a74d33b736b84 7443cc3b-ddfd-40e4-a61d-5db0b3ca7900 ad9903a1-1291-45ae-9f5b-48c6e41f5d2b 8911c80c-c903-48e4-af5b-ffedef9abc47 065bb06f-5bb7-4f79-b374-97a3011f22ae C5 2012-11-15 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VG-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 713fef5cffa09f6f559a61a4e7875ea7.bam 4537328365 713fef5cffa09f6f559a61a4e7875ea7 756107bd-f515-498b-94a2-96fe3c386284 7d2b2722-22bc-4ac7-aea3-0040394413c0 0bd52d75-5113-4ef1-bc75-509f59eaef2b 9a353aff-21e2-442d-9e95-b41c2c7df0e9 JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A1H6-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9512cce636d1deea468bb0b486e8841c.bam 5892756691 9512cce636d1deea468bb0b486e8841c 75be2a88-7c8c-4fd4-b3ad-c5f3a0439c99 0f91351d-4409-454f-b18b-b4cfc22ba161 1fe594d9-4240-49ee-8afd-c7d16a377181 e7210376-d4fb-4a0a-acb6-6d07183c8e09 EX 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PL-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0e76da20852762ccc974b8df9295230e.bam 6271742932 0e76da20852762ccc974b8df9295230e 768de0ae-c644-45c6-b6a7-75eba7c1e769 42d4699b-a0e7-4c81-b448-b8e02138f580 45cadcf3-ea98-4063-9255-5c18d6a5cbab 6ee33187-69a7-4328-9521-173cfcde7a1b EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OA-10A-01D-A16Y-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OA-10A-01D-A16Y-08.5.bam 8706780761 b7d956742d372b6c872cb4005787b3d3 7789f892-91e0-4f24-a5f1-165e0111e8be c507e1ee-91f4-4535-ac84-4f6c368b7448 46c67dd6-8e66-411d-ad05-95daa9005eb2 4d3c0511-cf21-43a8-9345-8dfa41111408 DS 2013-03-25 2013-03-25 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A411-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 04ef90fa74a74829427e6a294f321d13.bam 6406977808 04ef90fa74a74829427e6a294f321d13 77eac1fc-8305-4d1e-b787-cf09f4dfbb09 4612db5e-d3f3-48a6-9349-f94cbf9b8d3d 84cb84d0-7c7e-453c-8cc5-65b5af941028 a6a6864d-e479-41e1-9cb5-64c7f25cacd5 EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A1OC-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A1OC-01A-11D-A14W-08.4.bam 19685933015 325b70406caf9ace840c04da1e84325a 780ff591-5028-4714-b66b-ea49b4d424c3 ba015a7f-c612-4309-b767-177fd5802e4f e711b88e-fa0e-4781-8549-7a53ed3a13a1 3b3d08f6-0463-4647-87cb-86f64509e3cd DS 2012-06-05 2012-06-05 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A2LZ-10B-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 12fb0bc5f12c7a158c9f0cd7fb66ae4b.bam 11506882562 12fb0bc5f12c7a158c9f0cd7fb66ae4b 795163d6-c699-4235-b584-f0eeaddf445e d8f4b908-0a83-42da-95e9-434d1d71adb1 be8fa67d-c2d3-4fff-82fe-a46ba1fa8df0 337c81ca-c85e-4c54-9dd6-9f80043ce62f C5 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-4J-AA1J-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 723bd8945d64f1cb26c9e743cf5df63e.bam 7790583000 723bd8945d64f1cb26c9e743cf5df63e 795eec1f-4882-42e4-a06e-13fa7a4fed9d 3f5c3760-93fa-497b-9dd9-4e549048025e 53eac147-7eb8-4c54-a982-5e058d6749f8 bf18171e-7adc-4a36-8435-e033620e7f8d 4J 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HE-01A-21D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d02f9be36c0343cbaf2178b16b0cd5e9.bam 7919306571 d02f9be36c0343cbaf2178b16b0cd5e9 79e2c474-a2ce-4923-8d25-b2e41c7ed54c a5ef4c25-9b8c-4b52-92ac-6f0bfff93282 bc63dd2a-b8f6-4b30-a8d7-ce193bcd17f1 506d8b22-ee8d-4fb3-bb57-5ca79d6f5637 C5 2014-05-30 2014-05-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A0VR-01A-11D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A0VR-01A-11D-A10S-08.5.bam 15202824984 17f6d1a6c6b5c94d96956718bf6e0031 7a00e722-022a-4f01-a1c9-39338a378161 dc62866c-0dc0-4ef5-bc63-fee1e943a99f 39a3120c-0889-4a10-816a-e07528a35f7a 3343f9b1-7dd4-42b7-8d72-518a05d936f4 BI SRS202282 2011-06-09 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-DG-A2KH-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e39bc0a75ae472f2a4dcaeca39c9809c.bam 6156858318 e39bc0a75ae472f2a4dcaeca39c9809c 7aab3af6-c71f-43f2-95bd-769d2331f490 cb6f6e3d-2272-47da-98ad-6bfe2ee8e25e 6248f2a3-0da9-419f-ab77-c3f6f4353eb5 800667fd-7e05-4a1f-9c22-a7bcff0aa630 DG 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UQ-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 437eb86208fde722ae7bffe2b4cecc4b.bam 14061746772 437eb86208fde722ae7bffe2b4cecc4b 7aed53fc-0c27-41b5-a459-d2e40f909e32 acb4f047-6c80-4a9d-a498-67031316e08e 2c600a58-98ed-4572-9b6f-edba2719790c f8e3b30a-9755-43dd-98cc-180aebeeb984 VS 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UD-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1aca32cedb971092dc85c16c0ac531b1.bam 7465067519 1aca32cedb971092dc85c16c0ac531b1 7b2c2e65-9da6-431f-85ec-968a41a60181 5d57a17a-bb6f-4d56-9e1b-e8c2160e7188 60cfa29f-4770-4ee4-aa37-787f53155662 f73e6812-7f22-4eb3-964b-0f30619bec67 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A3JJ-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 692ca1a4361f667cda821e16fc74f630.bam 6512984954 692ca1a4361f667cda821e16fc74f630 7b5d6d8f-4406-489b-ab65-f14f0c92437d 28db5b6a-4a7b-4308-b7c8-7d43b4c4e503 f150d999-cdec-427e-b8b2-00731c648989 5b1361d7-f0e2-406f-b632-31ffbf8721af HM 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A94Z-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5fd45a4dcf1c787898e6a980ae914359.bam 7815309532 5fd45a4dcf1c787898e6a980ae914359 7b8aec4d-f48a-44e2-9119-80b3981cf27d 0dd835c0-033b-460f-98ae-adb00b0561b3 69baba9f-19c2-4947-95dc-0dd3412929ba f324a954-6590-44e9-b799-690910e82fb2 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A8YF-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e987f58e7a43eb47f9e62f6dc47d01af.bam 4428017198 e987f58e7a43eb47f9e62f6dc47d01af 7ba7145f-7d14-41f5-ad7d-1f3cf09e17ca b0876744-9b71-47be-8a39-2cd51682de19 1dfb4565-81e1-4a1b-bb59-9b5629d6c447 c13258f7-5fc4-4710-b328-baf3d9014038 EX 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RA-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ba19723fca7d076aac276ac042060956.bam 7044020964 ba19723fca7d076aac276ac042060956 7c90d268-a7d6-4cce-86c3-e2cd1732ac85 a36cc751-6ac0-464c-98a1-9e29735c1962 ada77320-fd05-4e43-be72-864391044b35 3c4fba8a-8b7a-4558-906c-463377ed8536 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CM-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 58af223cf4737372cca2914464d14d1e.bam 6076898219 58af223cf4737372cca2914464d14d1e 7ce71082-a7db-4161-9ec3-35c730b5f0d7 2f32f039-8e0a-47d1-b4c2-b5851689b030 d223ff09-b80b-4368-9d80-a59dfbe4d820 fefa6b4c-243d-4544-accc-11515bbe516e C5 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A5RQ-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8da2436d855cf9813e7ec8c5c06cba8d.bam 5851748521 8da2436d855cf9813e7ec8c5c06cba8d 7d1f5fce-22f1-4cdd-9115-f5e5fb2342cc a5d8e29b-c0c4-4ae6-aa1a-94ddb9f3d410 b16469af-a721-43e9-a4d7-c39b94d1139f f35bfa2e-f04b-47a7-9d5b-dba97c937be7 DS 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LT-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 894a9b0eea320f91803f37d3315d61ca.bam 5850444457 894a9b0eea320f91803f37d3315d61ca 7ddfae4c-93f6-4d79-ac85-5d402f2ad363 aff606ff-0c62-4adf-b137-275bf4aafa5a fb66b7f5-22ca-4d4d-97c2-30e6edfff781 947484cd-30e0-4941-8f84-ddf8eb70e3b0 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QQ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3b1a4b29166b6bc7a5b3d5b9e5a23af8.bam 5393483564 3b1a4b29166b6bc7a5b3d5b9e5a23af8 7e928dda-e631-48b6-a2e7-464146226076 b9e9d9f4-6ba3-4184-b841-9c53654b02dd b12deb95-6aa1-49cb-a3c5-a711d42d6fb9 1c968741-c5d4-42ce-890a-973df7855b33 ZJ 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UO-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f54056d0435b372d8987fd5c47ac25d1.bam 6348394064 f54056d0435b372d8987fd5c47ac25d1 7ea560e9-39c6-46ef-9190-75cac468af54 4e50c3fd-5b00-469d-9114-de32563eafa3 4da121da-9193-4ac5-8206-03cb1f7c2c14 227a83ea-a210-44af-82bc-d3df6cf7483b VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DR-A0ZL-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DR-A0ZL-10A-01D-A10S-08.4.bam 15481650886 f418e01230fda3abe76b37d2b2f7ecba 7eeea4d1-0327-43ff-b293-7fe41f33938a 3dc49f42-9237-4a15-8ff4-f6ec60a70467 36605f5f-245c-41e5-a9db-705373da7923 7ed167e6-07cb-4f06-9936-fad9f822f65e DR SRS206873 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A1M7-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M7-01A-11D-A13W-08.2.bam 16004340193 f9612706c1d83b669de55afe584f3133 7fb0c839-acc7-4ffb-951f-d218fbfad236 e4e82491-b934-4b89-a62b-7bb1a0d18c43 e8e16aaf-3621-4ce8-b02a-7893dd656e4d 77c5348b-8327-4851-98c1-2f6bcd0682f9 C5 SRS203080 2011-06-20 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A3YQ-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 13c5f9e05d7d7c9e9872d3d7ace85e12.bam 6561434634 13c5f9e05d7d7c9e9872d3d7ace85e12 80696ab2-d5a3-4c93-9e9d-cc04adb6b4a7 9825f84f-7b62-480c-9b58-3f461ea578d1 6e01248b-c551-4f52-8066-cb2d26eb6394 84a97589-63ae-4151-89f3-40f5aa9de72e FU 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LC-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 024af5721edd84237323f62a810758fa.bam 4459524311 024af5721edd84237323f62a810758fa 8069210b-077c-4436-bd0d-9ba2381d7d7d c3d75701-b40d-4e8f-aa95-d71183218400 58bdcace-0047-456e-a225-68953edafe5e ca909a69-58fa-4eb0-a013-fc6eb99ed794 IR 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UA-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 870de6137d20995ecdf7fc47388237c1.bam 5950641587 870de6137d20995ecdf7fc47388237c1 80a3583d-20a3-47f0-a141-8e51cde7115e 10ce63c1-faf1-4577-ae82-91dca4354fde 60117b70-36c0-41bb-a9fc-85db8fa10102 bbf2c2f6-643a-4ed7-b27f-0a114675553b VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A4S6-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8f21588ebf640ebe0660f06c8f56fc8b.bam 5954334342 8f21588ebf640ebe0660f06c8f56fc8b 8128f7e6-7e0d-439b-b63e-947a795af1dd 542f81e6-6083-44ac-96e3-546512629746 6bcf8b41-7abc-4b6f-899a-1f67b4ada765 eb4db5b8-1f9f-479a-aa47-36cf387b2571 HM 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAX8-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b379a6ade8ed81fd741c9d13e49244d5.bam 8218887634 b379a6ade8ed81fd741c9d13e49244d5 82366fbe-5f4c-4400-8188-144ae1c2cca1 9e6d9042-b359-4f6d-b64b-fab369a1dd00 b5f0e361-d67d-4fa9-9916-43623dafb10f f6f8fbc3-cb20-4001-af37-825a73b19941 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZE-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a5197e1df4a52cbd4269b10747f80ed7.bam 4516585452 a5197e1df4a52cbd4269b10747f80ed7 83b9200b-1913-4799-b448-1b564ffc7ff5 dc1b5352-cd76-41bb-87da-e8c01a6b87a5 5e39485a-ac6b-496d-9984-2ea8075f6a9b 8542c9ce-a789-42b5-92b3-9caef8e0e69f EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CG-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1619e087772a8d39bb8c920fff5fec9a.bam 6549231150 1619e087772a8d39bb8c920fff5fec9a 842b6cbe-cb00-4046-b55e-2fb7676aa60c 32ce03c7-1db6-44ab-92af-7a76d5cbf14d f2c901d1-2039-4046-89b5-c2d45bcf10c3 1dd33bd1-8afb-4544-bd4e-cc5058dff454 C5 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXF-01A-31D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a3362dab8973dce3de0f9c1be92aa840.bam 13937370917 a3362dab8973dce3de0f9c1be92aa840 84feeeac-5faa-4d9a-aede-e2c7088cae96 5aa72552-08e7-4a18-82e3-65b99ce13d8d 0acd1e47-1099-469b-a6d4-e00db47f57a9 40ce7fb9-623d-4972-9031-e5e777e6f7d8 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UC-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build afca2361ee6227e334e3af3c21120960.bam 5461219840 afca2361ee6227e334e3af3c21120960 85868d89-8441-4ff9-931a-2cd9ee7eb61d 0a95dc33-f2e6-4723-a85e-87f716883112 5c326e9b-85e2-4673-9033-c11827467e1a 4916c5e8-dc72-4240-bda7-dfa6a6537b7e C5 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-2W-A8YY-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2308c254ed02bbab73f9478cc398e42b.bam 6691449385 2308c254ed02bbab73f9478cc398e42b 863c2619-35c6-47f8-850a-7054f8d3f711 2640c2ac-91d8-4289-b11e-816a4dd8d182 5aeac31a-176a-4f93-a376-a93a670821bb 62c9bdef-b273-47e7-896d-42bcbd9ed4a0 2W 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LY-01A-31D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8cdf8451fea140219064e854091dc3ba.bam 7183504811 8cdf8451fea140219064e854091dc3ba 884e53b4-0564-4241-bb2a-86433b4dd9c3 047f9e4d-86b5-4943-aef5-68199bf29e8c e733f289-a0ec-478c-aad9-1378ad26ddfa 298b78b6-2508-4247-a4e9-aee460786f98 C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PI-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b3cf4864641cbad52d3817e8c41c01c0.bam 7601308881 b3cf4864641cbad52d3817e8c41c01c0 89357aa0-518a-4c2c-930c-3253e7fd35bc e3848eba-3fe1-4f2e-a96f-eba982532f04 c659f1c9-f3b4-4cfe-8627-2bb716c62b96 243df871-b041-450f-88a4-bc5174a73601 UC 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZD-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5104268bec67e471523308029855cf7e.bam 5187713272 5104268bec67e471523308029855cf7e 89564ab8-ecf3-47df-8445-63d7595830a2 7fd39abc-ea1a-42b8-8cc1-90ec3de41c86 35d677b6-0487-44d3-bbba-651eac7e0635 0add880f-39e7-48ac-94ea-8e15f1ee3d3f EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXI-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 547ca3d93828f25256bd5cbad92a467b.bam 11589548226 547ca3d93828f25256bd5cbad92a467b 89c5f59e-2179-468f-9738-53374af97fc3 e57d9f64-74e8-4de0-9049-6124df975bb2 40a86987-e77f-4977-92b1-8217796e1938 0efb40f8-0996-4ae4-a2a3-9df336b31a90 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3TQ-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ad2568c1fecffa4d79cd27ecde12fecd.bam 6162664403 ad2568c1fecffa4d79cd27ecde12fecd 89d2fab4-6e84-43ae-92d0-78171db0cb25 3367b5e8-cebb-4e94-baae-17116774c04e 7218aa6f-3345-484f-a329-a3b6169a67c7 b76ed8fa-2f4e-489f-aaf7-a69cc535c888 FU 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73O-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9268bd9fedee4b64102b19fc5d534c45.bam 5782056029 9268bd9fedee4b64102b19fc5d534c45 89d7c84f-7419-42d5-adf9-8da6fc2d2073 082c8656-7fab-4610-8aba-9505f60be116 d0cbe668-5c95-4261-a1e8-cef55093a0f7 bc95ea67-748a-4826-9112-8ec1ea2167cf Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QO-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4da93329803ce72a5de740d9f36f87c6.bam 4567725802 4da93329803ce72a5de740d9f36f87c6 89fb88f1-256d-42db-970c-79601cb8f7f0 a2f93067-4e60-4b2c-95d9-86ef898884c2 eb3ba1fb-8254-4c02-a982-507f075cbac1 c65da2a9-b5b3-4e0d-9fa3-f6a17c212ce1 ZJ 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UB-01A-22D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 02c72cb8c856275727f75bd0b12bd9cd.bam 7429541461 02c72cb8c856275727f75bd0b12bd9cd 8a9bfafc-6819-4ec7-8f75-c0a51b6442ac 3862f579-6d38-405e-890a-cfb4a9ca4d4b ca242b4c-b879-4e13-a1e7-84c984067189 720645a9-7408-4cd2-a6f2-de9dd694cf3a VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DT-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 918e5eb1512d279ac604bd092639057c.bam 6847167634 918e5eb1512d279ac604bd092639057c 8ab4cc88-cfe6-4418-9f30-15db21edfb78 3b423342-bc9a-4c60-9f5e-992e4aa439fa 46adfbbe-3add-41cd-a388-b1ee0790bf62 badb7296-d012-4c93-9952-dc53f8e2bbd1 Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1ME-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1ME-10A-01D-A13W-08.2.bam 17951930967 781827eb92057b7fd3f4760985dde70f 8abc0013-1840-4897-97af-aeb416b7a91a d95c0a8b-ee27-4fc5-a963-53a9d5174c19 a0598331-79e1-418d-b50c-fd945b843506 999bf71b-3c36-4055-a38a-a5e1e86c458a C5 SRS203113 2011-06-21 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-LP-A7HU-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3d89ae126826b86ed1f60dd85bc988ff.bam 6667143390 3d89ae126826b86ed1f60dd85bc988ff 8ac6a951-8cab-4e02-91f3-90e06b577f6e a18b1abe-5e70-4077-8bb9-fbc2c13a2845 7067b7da-fb1b-4827-8fe6-9433ed672d3b c8e06edc-bf1c-4b84-91bb-582b6c2936e5 LP 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KM-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fff6bc2b436912285fccae2bae94e7d2.bam 6799659316 fff6bc2b436912285fccae2bae94e7d2 8add9288-84e1-45dd-aaf8-8fb08c93131b 4b1c779c-a2a3-46f1-bbea-845afa302761 e87fadbe-c58c-41d1-b413-8cf6ce70ce94 1b6919ff-16c7-4986-a7fc-af7900a52909 DG 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AB0H-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5fb740ac43bd49d3db04341e9c6e6cd9.bam 7846598164 5fb740ac43bd49d3db04341e9c6e6cd9 8b36c7d9-ea31-49b9-9517-459ae4967fff 5b50ec29-c80f-4446-ab20-6fb07debeaa5 f0daf315-8909-4cda-886d-a2770b08db94 e2b02b02-860b-485b-99ee-7ec70757d928 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-R2-A69V-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f900690c64475cc91dc9a2e7b070f710.bam 5253598916 f900690c64475cc91dc9a2e7b070f710 8b7dace0-4b40-4c2c-a427-5b8f61ca3a97 14e16f58-9c59-458e-bea5-426b858e81e6 0e137272-a21c-4c5e-bfd1-a774b339a753 a48d2173-fe97-4fea-8f4e-ba81b5f6a833 R2 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXU-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c519a94a9e99053e09d60769895165e9.bam 10038961777 c519a94a9e99053e09d60769895165e9 8b8c2827-21e1-4694-b08f-bd433a4ca634 23d56772-0865-448e-b58f-5a4ae95f74d1 ddd4b6d2-5be0-4edd-977a-a795eea3c738 4ea52eea-1ff8-4b69-ab97-caaadf915136 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UJ-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8580d3adcb95fd2f9e286f8f2659388a.bam 4998190844 8580d3adcb95fd2f9e286f8f2659388a 8b8e07a9-d2cf-4fc9-99a5-f0637320b811 dfd3d712-393b-486b-b0f0-432a2f5c5fac 78c62970-4b48-4dc4-9042-5f48f42818ec edb78cb9-e493-40a3-9f9c-9e1f3a88c768 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A23L-10A-01D-A16O-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-FU-A23L-10A-01D-A16O-08.2.bam 12804461036 49fe5b5e58eb87afc6bcb082e8a43948 8bac08cb-e6dc-4435-a86e-531493ca97be 6881795c-5c2f-4406-ae0a-62c58056b4f2 86731af9-2d33-4521-9cf9-5f6152ca15d7 2d98bd94-55ec-442c-87d4-96e7c0529158 FU 2012-07-14 2012-07-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-LP-A4AW-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 12a0eec1a0a953989d8d2f63fb35ac2b.bam 6503134598 12a0eec1a0a953989d8d2f63fb35ac2b 8bbd06bb-c9af-451c-9742-5c2796708905 dc7ed67b-fb7d-4b7f-b4ba-21db7bfe7a48 74e47ded-2c00-4455-aaa6-cd662dfbf05e ce324702-d597-49e4-8669-bcf2833c0f28 LP 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZF-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 33316aa3d72207fca24e7bdd0fb726e6.bam 5460053095 33316aa3d72207fca24e7bdd0fb726e6 8c14a75d-a61d-44e0-a922-a740b656020a 7ac19348-9bcf-43e6-af2b-2eef1e6c3e79 0c6bb7dc-45a6-4190-a7c9-b080d49fd58a 42c9c212-0d69-4ef3-8e63-0964f6f7b6df EA 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VJ-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9c19d78e7f69d4ef4ce1b35960d8ea40.bam 5791601843 9c19d78e7f69d4ef4ce1b35960d8ea40 8c14700a-6c18-405d-9514-f450fc27ab16 8f4516f0-ef3b-4f1a-881c-a1289520ada8 f0bb0d18-1190-463d-a0ba-839c2c776794 0fc6e478-1fa9-430c-96ea-b14fb2101181 JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UH-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4e904701c6e511b0abd83529c6f7e75b.bam 6174639357 4e904701c6e511b0abd83529c6f7e75b 8c32e6b2-b43d-4aa1-8b42-f72b53be3e14 ddc25472-1aa5-42dd-a201-f4751a118571 6949c03e-067a-49a5-b48d-e9380a1b0b27 ffe75deb-19ce-4bc9-8d1d-252c1917ddfc VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A901-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9b3f587852094fbc27b25eabc0312d58.bam 6402026263 9b3f587852094fbc27b25eabc0312d58 8cbe8af0-487d-4f57-a7fd-f5870f5525b0 c5484fa8-cb74-439d-b9d8-084873233164 e8f07d20-d043-4c69-8898-87d0f0fc5a9a 2d8bd645-6dce-4a03-af87-c91132a013ad C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WI-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6feed2d79fe801b2494180ad905c6c4a.bam 5315123474 6feed2d79fe801b2494180ad905c6c4a 8cee9d43-e549-44a1-985a-0ceddff8b262 e8d9f25c-40cd-4e8c-943b-5f44a8284476 c14468eb-e725-4029-96cc-75bb9ebd9def e85a47af-011a-44be-a8be-1f7a6736c903 DS 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8Q8-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f715f973136f243f932d2d494a5db714.bam 6231612192 f715f973136f243f932d2d494a5db714 8d9bde19-f0f8-46a1-b5e7-b6730d99f068 262978be-5b18-4912-892b-3b39765302dc 6c3c8219-74ab-4e54-81f5-84d4d5884252 9fc25b2b-56b2-44d9-8be2-5510c06b8d33 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VL-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4dcaffc6b6405056fc0b6c97499684d7.bam 5107870218 4dcaffc6b6405056fc0b6c97499684d7 8dc88598-947c-479b-a8a0-9479d61d2f88 12582a88-5eb4-4234-a4e9-f19442bec145 d1a5b028-ec79-456b-81a1-69838e2922df c3a67860-2254-434b-9144-36574d399025 JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LF-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 27927d7800b5124db5d3fc448e7df379.bam 6591386313 27927d7800b5124db5d3fc448e7df379 8dd03ba0-c76f-48d0-b136-c157e8a2376f 1a368b09-b49b-404a-bc41-aa49cdc7d8a7 785ddea1-399d-47d8-b2b0-39e95eaa24b5 bacc5092-b6ab-4a28-9d55-fa3ad22c3eef IR 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A94Y-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7773785f71b45e340718ba1ffe686130.bam 6417068787 7773785f71b45e340718ba1ffe686130 8e4f5b0f-4947-4089-b72f-03be59f9b71c ab0111c7-ebcf-4688-9023-c9bc81736f83 0e7f79cd-d188-42ea-bf96-4ba9e9b8606b 62f602d9-cb97-4456-a5ff-90e4104dbb22 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MH-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MH-01A-11D-A14W-08.3.bam 9086878220 4692800ed6c4812a6bd6f6c52a95f214 8f45989b-a5fe-4e03-a564-0bcd25a7d9d0 f26c7e5f-b991-454c-81c6-ceadfb6d0270 3143822c-66c4-4b58-8d29-e92d065ff049 a2c048b4-f95b-4b43-b9f1-b42bb48e5875 C5 2012-07-14 2012-07-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A94W-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a4e65d66868266fd5fa295880d0fcd0d.bam 4193522377 a4e65d66868266fd5fa295880d0fcd0d 8f62b26a-b251-4bf0-8b19-5cc6996cc1ba 2e3f4779-1603-4afd-af24-daf6f4bafcdb 2f6a0e87-1e6c-41f3-93e0-3e505fa654b0 58a2bec9-d928-45b5-9207-fe19ee9fca35 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QF-01A-21D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7d2b5b3285ec0517030840cdfe72b581.bam 4908515095 7d2b5b3285ec0517030840cdfe72b581 8fb72be9-25c8-42b7-8f1c-a1e79f05e289 05e39c70-4fcb-433e-9e16-f4cf649bcb68 21254cb0-68f3-4ecc-8d9a-73fb0e994c5b 9d1990fc-1a2e-4193-8eee-f46e93f4469b VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A1QS-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 08cdf889e615469fba6bbb5f2ae579a6.bam 7957436340 08cdf889e615469fba6bbb5f2ae579a6 8fbdb82c-66bb-415e-87be-24ad014dc8bb ef78763c-3449-4525-867e-197c045f98a6 6f9d21c0-3b88-450d-a249-3e9bafba2dfa dac3e9e0-2a56-450b-9f7d-81b57bb8607e EA 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BF-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BF-10A-01D-A13W-08.2.bam 17969371231 5075e7df0e9056bc731bbbc514ed4152 8fccddc3-ed2e-4540-87db-06a4251c201c e3adbb90-3051-438b-b7fd-7deab3f1cf03 262311a0-7a10-4934-8fba-11ee581ad738 d7002baa-1a99-441d-8d83-d146dc49b78f C5 SRS203014 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A8Q8-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a16473c401fd6107503fa136267a5132.bam 4933010186 a16473c401fd6107503fa136267a5132 901aa8d7-b230-4738-a99f-4f285431b38f e8a02ca2-4149-48c4-8da6-42bf4f3c0722 6c3c8219-74ab-4e54-81f5-84d4d5884252 3a63975b-9967-4667-bc7c-d3093315bd02 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M6-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M6-01A-11D-A13W-08.2.bam 18165081497 adcc0735b6daf90f07f6f5b52b09b147 902b01df-6ef8-4415-b547-8de634252917 21b83870-9be0-44d2-9365-da0ac1eb44e6 825a6fbb-aede-436f-800b-c7f096da0a77 013eeabf-611e-4351-b1a3-c3f172f5e081 C5 SRS203071 2011-06-20 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-FU-A57G-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 600c14e74ce6027981c5adc52eb690d2.bam 7699589019 600c14e74ce6027981c5adc52eb690d2 907eef7e-a6f0-4831-be12-dc41dd612c6d 8688044c-e6a4-45a0-9266-dde6e8873fc9 968bd652-786c-4ddb-a937-dc480cb821fc 393ee79b-6710-4c7a-b2ff-9c8fbe04fbaa FU 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KH-01A-21D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8894ceddbee870f11da6f2ebb9b53edf.bam 7854824949 8894ceddbee870f11da6f2ebb9b53edf 90ad02a7-dbd7-4f8e-8f76-b363a4755a77 f012de18-28d4-4214-a883-8b0a74c598a0 6248f2a3-0da9-419f-ab77-c3f6f4353eb5 6f0c0187-4fc7-492c-bb0d-535e0f9976c4 DG 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R7-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 63de906181be0f60b5b687ba9022cf24.bam 5936741155 63de906181be0f60b5b687ba9022cf24 9193165d-ba77-47d5-8705-557af3fb9e63 d4ff9f4c-d8b8-4842-98a8-9e36caab1e3c d7a75bf5-5189-4978-99d9-fcef91c9fbd2 6064867b-ca99-4158-9e01-a8a37a0f955c EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZF-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c6a4cfd572949365ec439342092c2fce.bam 5918965857 c6a4cfd572949365ec439342092c2fce 9220e965-9fc1-4015-8c4a-89f89c2780b4 e5eba636-4c19-4411-95f8-59b8218f57fb 0c6bb7dc-45a6-4190-a7c9-b080d49fd58a ad361505-6106-4aab-a671-5157b72b4c3f EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-PN-A8MA-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 84f6d25031d14e2f094e68d97cf03f4b.bam 6221671711 84f6d25031d14e2f094e68d97cf03f4b 929b478f-95fb-45e6-ba19-88e81bc35868 add05a30-f337-4d3f-88bd-477d3eae8312 55add854-e63f-4335-bea9-23c3eb1e766a ef45c474-ef46-4408-af46-0dbd7c71d7f4 PN 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZX-AA5X-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build aea4628a0eea329a66e893153226ec8f.bam 9113057399 aea4628a0eea329a66e893153226ec8f 92b4292a-b898-4695-a7c4-a54effb3faaf d4539dbc-3874-4649-9dc6-bd27f21581fd 4756acc0-4e96-44d4-b359-04d64dc7eb84 876ea63d-4fe3-4e7b-a066-e9d29976ab7a ZX 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-R2-A69V-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 21b543b2b39c6fe47a9daeb0ec0d4b76.bam 5452771387 21b543b2b39c6fe47a9daeb0ec0d4b76 92e68ec4-a260-4f74-8c21-6eafa9595ae0 31d332f4-54a6-44f0-bf12-0576e83c21ed 0e137272-a21c-4c5e-bfd1-a774b339a753 86d32972-f923-443b-b285-b18f6fd18fd0 R2 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UI-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d75077fbcf48c045d49beec0713d6984.bam 6573386619 d75077fbcf48c045d49beec0713d6984 932202c0-f20b-45bc-bd21-3d1a77923222 81ecabd2-99fe-403e-bb1c-8e43c1a2731f 9c516d28-bef2-4334-bdda-97950bd95ac0 59ddf846-c93a-46af-85eb-bdd57bb36aeb VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UC-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c8a5171162e0ac75e7be8312956393eb.bam 9838760863 c8a5171162e0ac75e7be8312956393eb 934b2e5b-fa8e-42d8-9c2d-86b7a05413c3 bb76b8b0-ee5f-4955-9b4c-2f8378a458f2 5c326e9b-85e2-4673-9033-c11827467e1a 531d7816-8606-4415-bca8-3b332f9de720 C5 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A40J-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7842fe2c1082f850fed7d28c2fc68434.bam 7878522236 7842fe2c1082f850fed7d28c2fc68434 93cd9d91-295e-41b7-9748-6f41ac92759d 956cb80b-81d3-4f19-9b71-cb636dc91845 63dcfa32-c69e-45ad-bea3-ae672acb11c6 79662c1c-ede3-4206-b294-6dd8cd8db438 FU 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LL-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a8c0aabb744ce9a2b374d6a633223c55.bam 5990354358 a8c0aabb744ce9a2b374d6a633223c55 93d3170f-782f-4e0d-b01a-dff1d3f34da0 fe76b2c2-feab-4c67-863e-28f103b47dd8 7c4ab1ca-4bdd-4ef7-9a42-f6c0c7136d26 c05eab24-367b-4996-bce0-6e9b24029287 IR 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3YQ-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 016a6572e79d1c84ab575c3c5b14c22f.bam 6228626203 016a6572e79d1c84ab575c3c5b14c22f 940667fd-8388-4760-bf23-eacc12f5bb2c 2e0e8f78-0cad-4515-861a-d81c76f98637 6e01248b-c551-4f52-8066-cb2d26eb6394 f4fbedeb-d14d-4189-99af-0f015cfe5ac7 FU 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8YQ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0a503198d349883516bc5d64a42ff281.bam 4459568704 0a503198d349883516bc5d64a42ff281 948aeff2-42d2-4ea9-b14b-f5c5e9a120d8 c90889f2-1f3b-480a-8051-016a1bbd360c de3cfb81-25c3-4137-8f24-ad8aa607c158 08d61f68-2182-4f72-9850-8f1abbf3c4b0 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-GH-A9DA-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f0f3e7684367b063ab13d1efb227d013.bam 6573511542 f0f3e7684367b063ab13d1efb227d013 94cf5d95-16ed-4c47-b93c-05402be713de 2dadc315-2b09-4669-bba4-a02cc3e97749 67195401-9099-4ca9-9790-f42bcb815289 78ca2e02-948b-48e4-98de-1c6e4fb3afd5 GH 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A69L-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3ecabf9dc59e01783befc5e9c4f54bfa.bam 6613404185 3ecabf9dc59e01783befc5e9c4f54bfa 955bdc78-52ac-4de4-b527-27ead9127923 8da1f60a-7dd4-4e44-b983-5d8dcd9404fd 6dca2a6f-7f2c-4524-b528-396a889b2a3f 3fbab96b-aa6d-4223-9929-1de48ddf5d5d EX 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EC-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 323e9427f78c7651d452207b7241cd5a.bam 8306035608 323e9427f78c7651d452207b7241cd5a 95fa8e88-e88d-473a-9127-04b619ba47a6 9b3f3b6d-c5df-411f-aa89-d4c7c4758715 afb5442e-0249-475b-8f82-cae4e0268ad1 1c1d6cac-62d8-4477-9469-25973f9f27ee VS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M6-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M6-10A-01D-A13W-08.2.bam 17189436706 9fa4dc4139f8f4221ca586ca6fe03757 96abde8b-6dca-4ec0-8c70-ad35a2b2a270 c697db9d-0569-4f05-a3c3-b470633c5927 825a6fbb-aede-436f-800b-c7f096da0a77 60991a31-58a8-422a-8e4a-ea01ebe43311 C5 SRS203077 2011-06-20 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-MA-AA42-01A-12D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build aac021ebb11b4a0e893c1c60a5aa39bf.bam 5003558890 aac021ebb11b4a0e893c1c60a5aa39bf 9718f365-208d-4a5c-bf1e-b53a22d61d96 f55b2938-9a14-4543-b78a-5bc61dd0a8c1 da5fcb99-16b4-4f9e-8602-d6a6192875ef 778cfc29-210b-455e-8130-85094940d628 MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RN-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86e9a3d3217eac5d09be7ac13799f37e.bam 5888457437 86e9a3d3217eac5d09be7ac13799f37e 972d422a-a2b9-4a55-831b-e0a2fab291a0 eb51413f-8868-4aac-819e-1f6b8931c4c0 b610d391-0c9d-4114-94d6-5e4aa4270122 c44b832d-9f76-4ea3-9cb8-9f51465d605a EK 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73R-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b723f04be0ee06c7b5ce190ecfaa6a00.bam 6660160511 b723f04be0ee06c7b5ce190ecfaa6a00 975a50de-437e-44bf-bb94-f89d2f2200d1 88f672e6-0cc0-477f-894e-6d3629f0fcf0 d9b0ac5a-811d-4305-bb1c-a965bd389ce4 52ffbe32-0018-4f2b-95f7-fad8c331d863 Q1 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A950-10B-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fcc3cb1f6b31dd9159622934b6c37dc0.bam 7717587345 fcc3cb1f6b31dd9159622934b6c37dc0 97572dc6-5eab-42e0-a606-7b3d98b781b3 ea5ec303-3a7d-4939-a7ee-774de3892c62 3d190f07-2f79-4ee6-9f63-0b563dc05c74 6ae0f656-07c5-454f-8c6e-8015775a7aa7 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A1H5-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-EX-A1H5-10A-01D-A13W-08.2.bam 18315451486 df15f2c0efa8c55f6ce9bceab56f89db 97ec0ea7-0413-4c8e-aad9-d8ee9715f103 0a3a2d94-7e83-40a5-af85-0f76840a3037 6b74c07a-9932-4a80-8296-9db08d0c6964 28b61277-d0ab-419c-be3f-d1e56a2c20b6 EX SRS208634 2011-06-21 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9V5-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 43f2cd21c8bf106981f52f14e7d55581.bam 8013720876 43f2cd21c8bf106981f52f14e7d55581 984253d4-45e8-499b-aae7-2a0c276616c3 ec360aff-67c5-4b66-9a29-8c6657aa2586 d3ff2aeb-46be-4f54-8a8f-178eb921fbb6 9e58ab67-62f4-4270-b7d5-3b4ed920defa VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7UE-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 06769f6834f783e7b34e6a6c612d4305.bam 7044279217 06769f6834f783e7b34e6a6c612d4305 9893b306-dabe-4e7a-b946-46e63f9fd5b8 f9e9f417-3040-409e-9c2f-d8b7f71f0452 da30a845-c4d3-4c78-b8b0-210239224f8f 0b293264-bca6-42f4-96f5-317cd79ab3dc C5 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GM-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 71a06f94442d428c5924e119be90f02d.bam 6186141751 71a06f94442d428c5924e119be90f02d 9a44ae6b-4220-471f-bb58-f477d5929a7b 80d48e67-84ee-4674-ad3c-8fd52f9755a2 cb780c10-8810-4384-b829-954aab1c16c8 a4b92b76-ff87-475e-924b-840f652fc019 EK 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KJ-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ff3fb0e4c8af80ed9c012bf598bca00a.bam 6455745715 ff3fb0e4c8af80ed9c012bf598bca00a 9adc022f-85d7-4504-90fc-89e5f41f0c35 8be2b0f5-7bad-4720-b13c-e95b32bdb933 7c93642d-7e05-40f8-b1ef-a014edcfba42 4c1108c0-ed8a-4caf-9417-ddfb6352c61e DG 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A913-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2b1cb8c1bf70abd4baa133b8a9d49a76.bam 7306878729 2b1cb8c1bf70abd4baa133b8a9d49a76 9bca1a87-8749-4be6-954d-b7185ac703f7 23184977-f920-430b-9a3f-50b170f340fa c9f519b6-73f1-4737-83cb-f5ef208592cd 3cb78816-01a2-4781-a3ca-a5ed38501fb7 MY 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XJ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 72af3a7fba7ab82b4cba829c2c937dd6.bam 4904174430 72af3a7fba7ab82b4cba829c2c937dd6 9be4da68-a506-4c6c-9c70-1d7d2fde1d53 43e79670-cfdc-4770-8acf-281e60dd42b9 e89d0cb1-6ec2-43ee-a6d9-b922b680af34 3cf4ca4a-c992-4a2d-b8b4-8b6bc1b83004 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UH-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dd3d2d6a736501618a227d9fa0c56685.bam 8562454006 dd3d2d6a736501618a227d9fa0c56685 9c123236-a23e-4326-a58a-4c720152f569 d81717ce-94e4-42f5-9382-b364b3f32082 6949c03e-067a-49a5-b48d-e9380a1b0b27 6c82f9d2-49e6-44ba-9797-63fc7b1a9260 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VK-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build da4f05458b71b3b9a1a196579286b56f.bam 9463433130 da4f05458b71b3b9a1a196579286b56f 9c715fab-6571-4003-9572-2c99188b2598 0d7c75a3-8a45-4361-b159-6644b42f2ee1 bbb96b5a-80e8-4542-80b4-2444cf1fe51e 3f2e0ac8-13aa-4fc1-a08b-ac22c19d5164 JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A23K-10A-01D-A16O-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-FU-A23K-10A-01D-A16O-08.2.bam 10813585547 a59a4b31af732a99012efa7683f90374 9c8e0b6e-27bf-40be-9039-d959d0e8caba be8cbd23-c2ce-4c74-b0c8-6c307a8afeb5 85abfd69-cf72-43f6-a7dd-97056f22c91b ad2cee65-ca6b-46f5-a145-227a18211b02 FU 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EX-A69M-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build df2617be96b9a650d2d1716ed04f25bc.bam 4664258528 df2617be96b9a650d2d1716ed04f25bc 9d3072be-c2ee-4898-b232-6e63aced3a5b e6a488e7-6307-4b66-ab64-31b087b53e90 1e4d7755-b971-4c6e-a2b9-dd83d92bc4c9 2383c560-97e5-4517-a330-04afb072b35d EX 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3Z-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 84ebdaef5cbbc6ed0a0cd2ff9db76edb.bam 6533662708 84ebdaef5cbbc6ed0a0cd2ff9db76edb 9dc877cf-8ecf-4700-bbc2-529f3e123861 3d8f4869-1fea-400f-b463-cc2ba079d923 bc2003b9-d489-4559-8672-d9fd2d82f2e8 a903ad9a-2ce6-44cb-b821-27de79576aa2 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A3JJ-11A-12D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e582af9ba2823feff215d24f322c6795.bam 6305582372 e582af9ba2823feff215d24f322c6795 9df08f2c-31a3-4e91-99af-058ad643ef51 ac807edf-6fb5-46c1-9fc4-9f43fb319c49 f150d999-cdec-427e-b8b2-00731c648989 3fbfda3f-0286-41df-999c-4ba50429ca60 HM 2012-11-10 2012-11-09 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3Q0-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c03b6f5e373823f296da9f9054ffec89.bam 6446429994 c03b6f5e373823f296da9f9054ffec89 9ee9ab22-5750-460a-b9c1-7998129870b5 262dcf4f-13c0-489e-a4c8-060e2eeaa8d7 20280122-a66a-4c83-8f25-0b9d97558dc2 04ffdfc0-a73f-47ae-9014-73870b69ad91 JX 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CG-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 970aa77d058b34f6993256b8d659ec34.bam 5174043105 970aa77d058b34f6993256b8d659ec34 9efe47fe-b025-412c-bb6f-b64ea1172bf1 f5472540-8feb-4027-8944-08c23ab4e912 f2c901d1-2039-4046-89b5-c2d45bcf10c3 e88f2479-3e23-43be-8c35-1e9385cbce08 C5 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A0TN-01A-21D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A0TN-01A-21D-A14W-08.3.bam 10367595865 11cb1adc1dbcaf52d206b335b59e263f 9f3615b6-bfc9-444e-949d-6af0360ef5f5 1a006bbb-6b95-4d82-8d1f-1b416a803c06 14c65927-b9dd-4ef6-9917-db7bc431ff2f 59b0b757-7d08-4b3e-9974-fd02747d3665 C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXN-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 54e398de0c7d169353bddb9bca3202dc.bam 4868289185 54e398de0c7d169353bddb9bca3202dc 9f4900e1-12d8-4a37-9c8b-3ed8eef20dab e1989b4e-4519-4c89-8424-7fd71cfd3f43 5f22e050-c172-4f2d-a1f9-6cb749b6ef98 00672dbe-c187-4cd9-9116-1b32e6559c83 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A50E-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f06ba2f999a46b65380ea611957275d0.bam 5122889580 f06ba2f999a46b65380ea611957275d0 9fec7d2c-4dfc-49ba-b7c0-d4057c88cb27 4a4cb3a4-1fce-481c-835b-786a236954d2 6a18d184-d3a2-49c2-bd4b-9c18f91b98c7 4277c6a7-2a85-4f8c-834d-f89d60bae5de EA 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8ZZ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a69ff34e138b2104cc8c91f35d0b362c.bam 3973840292 a69ff34e138b2104cc8c91f35d0b362c a00882b6-00dc-478f-ba5e-88f6ec72d7d6 69fd02ae-3922-4365-83a9-e7899b8f83fe 33bc6504-d9ab-4b64-a87c-012915f36644 2c6dc14f-ed9a-482e-bbe3-fedb9ab65757 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A51Y-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d10302ec7f450f7e98fcf090ec5997cd.bam 5526685782 d10302ec7f450f7e98fcf090ec5997cd a0bbc787-23ff-4246-8d2b-c7c1bd9635af 72a08b7c-3461-40f1-970c-54eedfdc0279 77da506b-e726-409f-b3eb-d41242862982 2283b95f-a2d0-4b58-b54c-d266ecb5b51c MU 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RD-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build eb6cfe5dd49cb781971fc2bb9c74edf5.bam 6205466386 eb6cfe5dd49cb781971fc2bb9c74edf5 a101b9c8-ac0d-441a-933a-695eb2d82eb0 aa41db66-99b8-4d24-ba78-67271a579215 16363ef7-899d-4927-a74b-e7c03b3d8af1 0262e6f4-0b87-4a9f-af4b-8e1657cab3c5 EK 2013-06-08 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BN-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BN-10A-01D-A14W-08.3.bam 9636266669 2e1a6a7cd417c3b79000fbef35c88cbd a1ec78fb-5c70-4ff4-93f3-761fb2eeed09 e5fd677c-5932-4462-b28b-f47c9c1b3935 8a4da4f0-30f2-497e-8a7c-988fd6b813cb bff9e8cc-5194-4cb7-8670-4c0ed526df15 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-MU-A51Y-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0ae47bde8ada60ad9af6b88181e8bc43.bam 8994102664 0ae47bde8ada60ad9af6b88181e8bc43 a2386784-f5bd-43e0-affa-799f7987befc fa750e98-4ce1-4cd0-b560-ff2629b9fac8 77da506b-e726-409f-b3eb-d41242862982 51b871df-0b7b-44fe-b9f0-0e39ae6cb3a0 MU 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A902-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bdc705f9038ef965c9efcecaefbd153c.bam 6126930181 bdc705f9038ef965c9efcecaefbd153c a3011119-5780-4520-9939-8fac1b16ca41 b013d63a-53f3-44e8-b616-65628af0f91b 010a807f-9dc0-4e14-9533-dcf478f3d947 a7501451-af5b-4148-a984-0b3f88d2c487 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8YR-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cdce0116fd1186fafe314d540052e84a.bam 5528148316 cdce0116fd1186fafe314d540052e84a a3264a02-a93a-4fba-9b36-72d254769be3 f4fe6baf-d8ec-49e4-89fe-7162fc3d8619 be8b1c78-8cb1-4bff-b1fe-71ecdc454c94 7b72c774-966d-48cf-bb50-48e762d96922 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DW-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6a59d8b5d43c66acc9de92c3b1299b69.bam 5740598459 6a59d8b5d43c66acc9de92c3b1299b69 a34157f6-ae18-47a3-a546-14b7dbc8669e 42448439-f7e1-447f-af5a-555da8dfb379 5dbd5436-696e-40fa-881b-c2386573ac68 984fc14d-24ee-429e-8172-996c0060aaf0 Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GK-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ceffc092b23324f6aeedbdf5027f0a52.bam 5896710770 ceffc092b23324f6aeedbdf5027f0a52 a4224649-e3a1-4f05-8b94-930b82d00c24 0e28e4ed-b9a6-4d94-94a4-a2bcaed053fa d07d0a56-a25e-426b-8384-9d49e6545527 19410184-fc5f-4a5b-9c57-2016c3cc6942 EK 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2H0-01A-11D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d926d42d2bbba23c6004d948cb132dbc.bam 6722027769 d926d42d2bbba23c6004d948cb132dbc a4580afb-73d7-4cfa-81eb-3fc2fb31ec8c 5dfbbeb7-8a28-4ce1-aead-6fcf508fd43c c83c52f4-3815-4f49-8218-cf80aaa62e2f cee04dec-391c-4c22-bc7d-d3dd36380db3 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R9-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3c5a21da0edddbcd47c697592f40ba94.bam 8232382575 3c5a21da0edddbcd47c697592f40ba94 a483c801-869e-4c5a-ad9d-1d30287b9a12 81d5dd18-5488-4e1a-b8c8-3f1d08495ebd 00ad0ffe-2105-4829-a495-1c2aceb5bb31 7efd873d-8165-40f8-a07d-69cfd68a491e EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HD-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 05071706dc978f94f98f9930666e6513.bam 10696613542 05071706dc978f94f98f9930666e6513 a4d232bc-3496-465a-a453-f52e3fbb246c ccaafdac-76a5-43c5-9202-e078e70d121e 12427b02-6e3f-461c-b271-6ab230f628e7 ba733b4b-cb5f-4ab7-baa9-3a30605e5ef9 C5 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QA-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 694020939f09263fd3ceeeccbb8c8924.bam 5324310805 694020939f09263fd3ceeeccbb8c8924 a51e3e0e-6c54-45b9-93cc-c28be12f3eb2 06c0747b-33cd-4adf-a6cb-a352643425af 1a3d5555-7013-4f06-878a-98944f075b63 383da56f-6642-433e-aa69-5c88f105e836 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XI-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 55f197836472035cef8211866b61e8e6.bam 5440198612 55f197836472035cef8211866b61e8e6 a52d2f28-9f1a-46c8-a9a5-de0e81c7d321 af5c461a-caf5-4077-80f3-a467f4044062 959fe574-054a-4fef-9cbe-a801a9a355de d257692f-0b8e-4b7b-9f6a-e573d9026911 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2H1-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3cf866c35fdf700c09b388db59bc7828.bam 7411954337 3cf866c35fdf700c09b388db59bc7828 a5404a95-44be-4dde-9c4e-a55410365aba 6ca9de1a-09d8-4950-9f9c-c1fd7d36aa7e 690a7b2a-7dc5-4504-9372-70c8b55e81c7 3b7ecde9-ccc2-455f-a935-a12895cda0fd EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CK-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8dc1cdfe47fbeba9a0e653e439fde003.bam 6844637132 8dc1cdfe47fbeba9a0e653e439fde003 a59f3a05-b376-4a3a-8db1-7cbb98260d27 a5ad3742-8d09-4cba-a882-37abf734f166 1c48393e-7de9-42f6-a6f0-2cbfb8359316 39fdbeb2-01fe-4615-8f62-e7d742d91108 C5 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A954-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 819fa3b4ee3f36ea19b40126abc7103f.bam 8849367291 819fa3b4ee3f36ea19b40126abc7103f a6363733-1e75-4501-af5d-63d0279ba4ff f83e71a0-7437-4139-9ca3-fcf4d74aa11a 9ba72a77-aef0-4788-8072-60c28902e55d 78147208-8115-4218-ac08-49ddc5e7a426 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A449-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8a8f185b15a1d64bb4fdc6985f1e1780.bam 6898492632 8a8f185b15a1d64bb4fdc6985f1e1780 a70724a9-6d7f-49a7-bf0f-b54e1b8d4120 1eb9870a-29fc-4eea-afed-b0b63fac10f1 eb0eb159-732e-43ff-a402-7f2d9f67daa8 ef0ae9ca-356d-4f5b-8f1d-acf8c02670bb EX 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BQ-01C-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f071077aa48a2da2216f8ee1aadf2bfd.bam 10895083741 f071077aa48a2da2216f8ee1aadf2bfd a71c0100-1f41-4bec-bd99-d7be3b4ed04d 6f36ad45-4cdb-48d3-b363-e52bcc64cb12 e77c3f70-08d1-40d3-b038-f09a519423cc 6ef38e19-07ac-4032-8fb4-59129a126d3f C5 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RK-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 37928e2b57e64ab4553eadae065ccdbe.bam 6108231829 37928e2b57e64ab4553eadae065ccdbe a7806951-6642-4a25-ba35-1fea5b035aba 4899ab66-79f9-45d7-8334-ac9137cecb72 acbfeb99-2b6b-4232-9ab5-a58549c6bc3a effc7cc4-57cb-46e5-aa64-ff8bb19d6bf3 EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A901-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 324cd14376920d5ce28ef50f6f2334ef.bam 5950980040 324cd14376920d5ce28ef50f6f2334ef a807c275-e3d9-4973-8898-4f1f073bb697 3bd68b9f-6ea1-4f42-b3bc-8ca74838b53e e8f07d20-d043-4c69-8898-87d0f0fc5a9a 030fa1d2-6da0-4f33-9574-f2d703751d1b C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LV-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 568ca2acff10814c04ea071c0203e6d4.bam 5996156446 568ca2acff10814c04ea071c0203e6d4 a825b279-094b-4787-b21d-dff97d3c60ec 3269608c-5dd7-452a-976a-31ac971aac2f 00bca18c-b3d4-45a3-8f19-034cc40449a4 cbad0c55-915a-4f65-b040-57111ead3bde C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CL-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 89b09b818bdc8885c04056772dd2102a.bam 5181510294 89b09b818bdc8885c04056772dd2102a a8a2b398-4ace-4f45-9169-5dd9aaa84538 ed9e7b75-2998-4c55-8fc3-7c2ade72eb95 bae2af5e-484a-44f7-ad6b-66137cdae300 20d8922d-ed56-4011-b4eb-0efcd4a40a87 C5 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A952-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b88eec46fea6a60ff80fd37cc4e2ca56.bam 6592376946 b88eec46fea6a60ff80fd37cc4e2ca56 a8baaf4b-b294-477c-ba27-daa1a3be4c54 62ac07b3-831a-4554-998c-aef5f865ad3b 9fa42fe6-ccd0-4850-b08b-97b20eceb8df ca8fa362-bd1e-4af7-bdb1-d1b2e113b551 VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A950-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 47ebd87baa31fe1f4ad03442c1cf2b9b.bam 7017719547 47ebd87baa31fe1f4ad03442c1cf2b9b a945b09c-4705-40ac-8d80-4bcdb98503db 18ea1b12-81d5-4466-a568-35195d4dcce4 3d190f07-2f79-4ee6-9f63-0b563dc05c74 6ae47534-32ce-47f1-9536-8774c525c226 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VI-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 590f62a3d1ff9ceb47c95271b7e83e41.bam 5690221509 590f62a3d1ff9ceb47c95271b7e83e41 aaa7b6be-3e6c-45f9-a949-45ef87f36104 3fa0d743-1312-4aa6-967d-7ec81af780cd 53eb4c4e-0719-476f-9b2b-279d438d7710 79205cbb-4cd4-4061-8313-898ecadb9f11 JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LY-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 79336789b2b54dd5a911c6a486795271.bam 10728822028 79336789b2b54dd5a911c6a486795271 ab29dda1-d844-4de7-85d6-4bac7ede8231 433b41e8-d79a-4da0-a700-821cd97cc1b9 e733f289-a0ec-478c-aad9-1378ad26ddfa 80879749-fd29-4988-a078-cd34d4745453 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3Y4-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2b7598e0f7962b89883ddf9e17ddc85c.bam 7156530726 2b7598e0f7962b89883ddf9e17ddc85c ab72e798-d364-4395-a6e0-7121fdab9a95 c151cb80-3624-46a8-b4c6-9141699c4cd7 3ac62513-b5f4-4063-aabd-dad08a1f56fb fd1c17d6-7c6b-4c0e-bb07-beee96129208 EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V3-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8d20ab99ebfc6be0715554bfd5a5587e.bam 6960971006 8d20ab99ebfc6be0715554bfd5a5587e ad8c26e4-d428-4f41-bad1-75c866a07ea7 eae83160-22ca-4f7d-9a62-d04a2080e0c2 1cb1d2ca-dfa6-4c42-9da9-c711dc5aab5d 2ac95c68-40d1-4b92-82dd-23a02e51d65a VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1ML-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1ML-10A-01D-A14W-08.3.bam 9143397502 031b0649f33c06e92ac825e3bb0c0e7d ae7ba2ba-16ce-4a76-b42b-870088dda7dd 428b7c23-dee0-4bb4-acac-4fd6042ce07d 374f614a-bcd1-4283-ac6f-fc27ddc79987 49dca437-04b4-4224-ad9e-c81abfa2df0e C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-BI-A0VR-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A0VR-10A-01D-A10S-08.5.bam 14614813542 242af174ec0c3eaf0caa138a48988a56 af3fa778-12ba-41f8-a2ec-f6b1e2a5e315 e717369f-73df-46ca-a7f2-749b84b96616 39a3120c-0889-4a10-816a-e07528a35f7a f978edd5-23a2-416a-b87f-b1cf6da45ceb BI SRS202288 2011-06-09 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-DS-A0VK-01A-21D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VK-01A-21D-A10S-08.4.bam 16809781257 b56e12a4ed4cc3ee99b2a2a1385af6de af8a3a1a-dae9-4e98-95a7-8b232b1fc3c8 32b46e90-0ae6-4a05-a9b7-2789bbbe302f 5ed3c95a-10d0-4cd5-a54d-523e81587fb1 0cdaf7e3-1b47-46cb-aff3-5e6762e8f094 DS SRS206885 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A439-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4f42db906f5b41c390db77a9e2665696.bam 6788703283 4f42db906f5b41c390db77a9e2665696 b022a263-aa34-404a-bd23-b567ea6d110a 4a6f9f51-18bc-450a-84a6-c29dc780ab8e 3edb62c1-25ad-4deb-a005-e881a887d06a 388c8abb-83cb-4999-ae5a-b146438274a7 EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UY-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e5af499a13a91d6235a4c3456fe20624.bam 11983955995 e5af499a13a91d6235a4c3456fe20624 b0c4851a-9fd9-4d17-8e3d-8018eb87d9c6 a686400e-59a9-47aa-85ed-d0250bcd2d71 a1b99260-8643-4cef-95a0-3853d64762b7 bce456cf-2c7d-4959-84f1-3cc4d69a1291 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LZ-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 80866b62e505324b7f98146cd1d16037.bam 15096175734 80866b62e505324b7f98146cd1d16037 b0f8152a-0251-40eb-b780-cd820dc4f131 32bcb373-b823-4591-ad69-0f9cb6ce730d be8fa67d-c2d3-4fff-82fe-a46ba1fa8df0 6b9f4254-dbd3-4d82-bae8-d43a4915a7cd C5 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LT-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 10c8aba03b79a473b049e2771a5f3a0f.bam 6102311358 10c8aba03b79a473b049e2771a5f3a0f b1c27851-8c9d-4d1c-852e-4217ac104aa8 0f6b355e-3898-4be6-be97-da0c3840a4ed fb66b7f5-22ca-4d4d-97c2-30e6edfff781 eede6958-96a5-433d-8823-503b58559ed4 C5 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LS-01A-22D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bc852ce57cf1c7fdd9124d25afbf2bd4.bam 6807434933 bc852ce57cf1c7fdd9124d25afbf2bd4 b1f26df4-f883-430b-b011-2247bb2db7ec 27dabab2-d65a-41c4-995a-f2c9b7adf441 185e1520-92ee-4af5-af15-fbeefb352c99 79248694-77e1-4fbe-8c94-64a308fc982d C5 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3QE-01A-21D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 949429624627d6c5ccc79d7e705e1c1e.bam 6167202632 949429624627d6c5ccc79d7e705e1c1e b21c8dbd-409a-4eaf-bc48-e251d126addc 73250f8e-2d08-4215-8cac-bcfcc9165aa5 a4e444b5-bbca-4ef0-b92f-908d608cbb91 36ffa53d-1404-49c0-b9c1-a3eb1ecbc6b9 EA 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EI-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 99d433eec59926450bbe0bf07aafbaca.bam 4111905393 99d433eec59926450bbe0bf07aafbaca b248862a-92c2-4275-a6cc-7a0178786d41 42b56687-7ac3-435b-a086-01a9adb68850 7b228c3b-e604-41a1-9b76-8dd3d5a59ffe 6203a3e4-47b3-4457-b112-56e36b4eac31 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A958-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8214acf922254ac0c437a9a61fb7b7bc.bam 13048943704 8214acf922254ac0c437a9a61fb7b7bc b27d3cfb-7358-45da-a5be-a07681048b1b dd703629-6903-47b3-831e-21414877d9cc 97cf3268-9756-4659-9e98-f200f96a91f4 8d7ae762-4d4a-4bed-a1f8-331a93c4d89c VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73Q-01A-21D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 34fdadd32d331e59c4cf59d4b9e31257.bam 5533685104 34fdadd32d331e59c4cf59d4b9e31257 b2faa242-fbdd-4805-952b-f7071a38b1dd f903a679-b170-4fea-8590-4c4123c022b7 5c72bda2-2ec0-455f-ab27-7247fd5ffff9 c7eae01c-cb80-4eaf-b0a4-93a40632f6c6 Q1 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MJ-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MJ-01A-11D-A14W-08.3.bam 9768938549 655926835cdb2bb6ca336a343527bad7 b3d9cacd-b898-4a01-a7ab-4aedd0ec56b1 85ef0ee0-dd3d-4733-89e7-1fb876ad266a 23f011e2-c025-4494-8016-2140cc8d4bce dd926c69-675a-49f7-9494-d85a489b8982 C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A3HT-01A-61D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b19f44f56c5c16f24dfec3fe7e41a98c.bam 6690098868 b19f44f56c5c16f24dfec3fe7e41a98c b42582da-f7cd-44f3-bba0-bb8c47662a16 8d78b37c-09aa-4aad-be4f-d6c128242f4f 3c5b2452-014b-495f-b86a-f522ed84bc3b 8460c1e5-0029-4d66-af11-373324347800 EA 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A1H6-01B-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3722b3fb3b695e259a5d730c2eb80a49.bam 7245389173 3722b3fb3b695e259a5d730c2eb80a49 b4514121-ed93-4b11-8344-cf589cdaf486 0267fb4a-5fa6-4ed0-9e17-e8b18d9a9b08 1fe594d9-4240-49ee-8afd-c7d16a377181 fe018d31-eee8-4335-96a1-95eceabfadf1 EX 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GM-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86e12a579ec4d8f499f8cff6a6efbd86.bam 5091012620 86e12a579ec4d8f499f8cff6a6efbd86 b553a851-249f-4c33-8695-69857019c942 23c04bee-2928-4d86-9d31-0e46da21cb24 cb780c10-8810-4384-b829-954aab1c16c8 1cfb672b-eb3d-44d6-ac76-bf3993632caa EK 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXA-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6208d2ab4e1ff4cd72edd8f544660679.bam 6693363248 6208d2ab4e1ff4cd72edd8f544660679 b60213b5-b280-49fa-abc9-81544d41f8e0 491dbd5b-111e-4710-86e6-a7e817c2f79f e8de2228-3aaa-48ad-a2e4-2940280af6fd 95ecee61-57ca-46e5-9042-f304549bba71 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3HZ-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6fd7e112b560ed34950a8bc8dbfcf4cc.bam 3669228085 6fd7e112b560ed34950a8bc8dbfcf4cc b68a5185-a145-4016-ad4c-a872afb9aab1 b0c92b76-7ee8-44bd-a5c4-5dc807bbb8ed 6ff12a54-10da-4941-bfea-7b66e19b4be9 6408a1f5-f5f7-40c8-a2ee-cb8038c15c95 FU 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U6-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build beed00d72a83a1b8f6b9eb96401824eb.bam 5647185658 beed00d72a83a1b8f6b9eb96401824eb b6cca406-2c04-4a6d-b841-f4c00e3b55dd 653e4ccb-c7db-4e1d-995a-21f83579ecef 98784bbe-e286-48df-838d-1a88040658bf caab3aab-214b-4ab3-823b-b8fe790514cc VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M5-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M5-10A-01D-A13W-08.2.bam 16999279292 30839d697ae5318046a287c63e963c40 b6ea256b-4730-4b66-b499-c1f1a71b77e9 d260e788-4165-4610-a331-06e6cd6e0374 0fec73a1-8d3a-495b-8008-c52f190f4270 4666f9bf-c9ef-44cd-a84a-c652051abdba C5 SRS203068 2011-06-20 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A94W-01A-12D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4f00286c36654cbeaa5bab5967d0ae4c.bam 5229916500 4f00286c36654cbeaa5bab5967d0ae4c b7f0eb89-46f1-4f6c-97b6-32d871fe0ce6 79d2e46b-ce1b-4de2-a3ad-a7dad2c93284 2f6a0e87-1e6c-41f3-93e0-3e505fa654b0 2fbfb3cc-7cd7-41ce-81f4-4a4645840629 VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2R7-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 37d02d3e7193e64f59c3b441df19249d.bam 5636110172 37d02d3e7193e64f59c3b441df19249d b8294456-297e-4043-b53a-c62708ffb817 c7ae530e-5804-4f7e-9618-d2c8d5b7d8c9 d7a75bf5-5189-4978-99d9-fcef91c9fbd2 ee9a22df-8612-4b71-af3a-6b16c73197ea EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8Q9-01A-12D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e8eb8a4abcdf5d7e20f3c80edc68f119.bam 7824178598 e8eb8a4abcdf5d7e20f3c80edc68f119 b8a66697-9edc-43ba-aead-95df3405827f a8c468ba-d8cd-4af2-a862-20e6941b4e5d 5798d741-c198-4c14-bcc2-e3b17caf1be3 a6ade763-6274-43d0-aab5-ae6eef582fdd VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A902-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4b6b9deb3aff721b3937f193ee146b88.bam 6432580656 4b6b9deb3aff721b3937f193ee146b88 b8c0e931-dfa9-48a0-858b-4d697646f385 5d5fb337-01d8-4c65-a073-48af61383137 010a807f-9dc0-4e14-9533-dcf478f3d947 1210c62c-d95d-473d-b088-afd93cc366d5 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A411-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0e97e50ebdd99b95f77d0344342c6d6f.bam 6311791817 0e97e50ebdd99b95f77d0344342c6d6f b90461ff-0243-4121-b7ab-a7af90fadf59 13cc40ed-7de6-42ff-885b-bd6965e8d657 84cb84d0-7c7e-453c-8cc5-65b5af941028 cb601af7-b63c-4fa2-b8f0-256002e19007 EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UP-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b730cfe0f00846ccd420121eaf8f3ab4.bam 5326309237 b730cfe0f00846ccd420121eaf8f3ab4 b966c8b0-4b3c-4b36-9aba-b3a975dbc012 8555e501-0251-413b-889e-2d6e5edaa513 f0cfaacc-30e5-4e54-b33a-f0fd5dad620e 04b8f6aa-7f97-4d01-a890-d9e6aa1d45df VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A953-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ddb6285ca948b85e6f038307bcd140b6.bam 6065546921 ddb6285ca948b85e6f038307bcd140b6 b9729639-2ad1-4bfc-8b76-5df48414409d d96689db-e3c5-4e01-9633-534e5d8c0934 da901e97-3a1d-4952-8254-9c4e60d2812c 153f9e2f-4302-4d63-9285-1fffaa30746d VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2M2-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 945877940aebf9c96832b22e5e26321d.bam 5778184218 945877940aebf9c96832b22e5e26321d ba2daf96-7747-4b08-8036-a7deba9e3add dacf14e9-c5e3-40ba-8ff7-50434efb1751 77d53d4d-3b07-4c79-86fe-6ac812968f39 8b9fc1fb-60a8-4457-bd2d-d993dbf515d1 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X5-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 72b67922a0f259e44c69a41606cb143f.bam 7201675873 72b67922a0f259e44c69a41606cb143f ba459a76-7001-47f0-b579-a76b599aa22c d4c8d571-46c6-4caa-a3a8-0dfb9590e663 aed93a3a-7dcb-4ba9-84c0-bc735cbd545f 39b3dd96-515b-42b1-ac56-66602e0cf8fe C5 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M8-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M8-10A-01D-A13W-08.2.bam 16274172222 a38bb59faa1fbfcdbdebfe58943ab992 bac0f651-a6ea-4a59-8997-43128e549c9f 358a6d54-df1e-4648-93eb-35175ae7c123 110cd100-5730-4873-9fab-2ae6c8732062 d551f7b2-6778-4983-a8be-d101eb7e5c26 C5 SRS203095 2011-06-19 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXJ-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 88b99fa310afdbcfe950b246ecce75f7.bam 7757044859 88b99fa310afdbcfe950b246ecce75f7 bad3bdab-8445-49e7-afe5-0bc17f9b525e f5cda0e6-0207-4e1b-bcf3-a7967b0b0171 6b60bf8e-29a1-4c6b-9ead-aea4ddc99064 bff8b8c1-bea4-462b-beba-fbd679f192cc ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A5XV-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fa0c9ff54a61caa4f5735e440eda1cb8.bam 6880186548 fa0c9ff54a61caa4f5735e440eda1cb8 bb266602-0608-4629-b676-8ddb6726ea25 8e00f794-d9ca-41a6-9326-27f8b2ece8ba 9dba5a81-3587-4f5a-8d19-e0b0aed0a677 8d5976cf-7e2d-420d-ba18-477a43ccec54 FU 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RK-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 93b883f5ac9ee78df800c56af53c57a1.bam 5345990322 93b883f5ac9ee78df800c56af53c57a1 bbb3846a-5d0b-4303-a32d-715807a73a44 db76d80c-fc42-4c87-a81a-b24328659356 acbfeb99-2b6b-4232-9ab5-a58549c6bc3a b51d8c9b-f387-4e28-a592-b53fe6c2fd8b EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PG-06A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TM Metastatic DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build db4bdcebc97b43ce16e66478cc3e7764.bam 6706440202 db4bdcebc97b43ce16e66478cc3e7764 bbf04139-0f19-42f2-87cd-b35d3bf815e7 98a1eefe-f96f-4a61-ad6b-999a1379f404 53d99a89-6ebd-4637-91db-7ce43ebc6b8b 952e4a17-f891-46b8-ac16-8d6c0751fb1a UC 2014-11-27 2014-11-26 2016-01-04 Live 06 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UM-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a147ed80e7a020690ca1d744941fb864.bam 6594308532 a147ed80e7a020690ca1d744941fb864 bc326b62-1952-422e-9861-a8f32ba832f7 c7124657-44a8-4e0a-8f47-8891d96cf958 ee2c9743-eaa1-4f0d-8d35-e96686ac3913 24825a46-bcf8-4e14-a3a5-e2486c54e247 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HT-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c2d8a20e8014e304773765b7b24cb7e4.bam 6601826646 c2d8a20e8014e304773765b7b24cb7e4 bc487663-dc42-4f49-a364-995a4c98bcdb 434e2876-17fb-431e-b7c8-265f9d172e31 3c5b2452-014b-495f-b86a-f522ed84bc3b 89ef7b55-afe7-4eac-84e3-b0df9ecf4b67 EA 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3Z-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 58a87612860d0dd4647ea643fee1afdd.bam 8506961613 58a87612860d0dd4647ea643fee1afdd bcc11a91-3ca2-4060-b271-c2ba874c4db4 216b5ea7-c2d9-4fb5-9b1c-7fb2ac0804d6 bc2003b9-d489-4559-8672-d9fd2d82f2e8 ea75c7f0-6bba-42f8-8d0a-5a592a7d5298 MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UL-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9b9cbb6a033c6700d3775e780e2ee200.bam 6499511965 9b9cbb6a033c6700d3775e780e2ee200 bd010bd6-2741-4736-8000-173b4f36b828 39ae1f8b-ca36-4de2-811c-fd3f9bf13449 7abaca8f-962e-4f9d-b63f-26c131bf5961 4dd233a8-e3eb-4c14-83e5-fa3229430895 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HR-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f047ed0af2656da2488d612ec33379ae.bam 7681562725 f047ed0af2656da2488d612ec33379ae bd44efaa-a015-4926-9cd6-395f998a11ca 3203ee43-42b4-437d-997e-b0bce91d7015 638035f6-2909-4a44-980f-468ac5d74e18 066a7341-746f-4602-9c74-c42683b1ecc0 EA 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VN-01A-21D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VN-01A-21D-A10S-08.5.bam 15236649078 16d89a22832edefbbd2238b9748edf21 bd65e648-a49f-4d02-a0e0-7441d16819e4 dae06e68-c43d-468e-a526-f52e8f549873 f8d342f5-9b92-42e1-8b0d-0876cc26965d 0bdb7e71-6de9-4949-bf71-abb9c7f5bc45 DS SRS206912 2011-06-08 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9UR-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 86d98de0fdf53c1684641472388d8f99.bam 6218886439 86d98de0fdf53c1684641472388d8f99 bdb5d311-3022-43c9-8db5-d7f5a31b8e81 eae360aa-1a81-40ab-826c-8a042744aec3 adc60720-ac20-4e73-9c37-3ad3119c07d6 5a8cd4a4-4a2f-4765-a2c9-9b362c867822 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BE-01B-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BE-01B-11D-A13W-08.2.bam 17359786297 554f1e5504460744d73aee63aa3f844d be0ca5a8-437a-4111-b359-67fa4c2f8367 8560d2cc-c862-4f4a-8b06-c2f4bcd6a0ac 2b6d2c15-8bcc-41ab-84d6-601442f4378b 7088f4cf-bab7-481e-a0ec-759124ef80ff C5 SRS202999 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2PI-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3a0215945f834202e97aba870ece18be.bam 7513805425 3a0215945f834202e97aba870ece18be bef78924-a8f0-4b84-bd57-bea6e2b24c47 0b319d95-644c-4b1b-8e96-36f215a5732d bfd82578-8b60-4c23-85a1-fc14a1cf5f12 e7434c63-5eb7-4f98-8483-2f77634dd1fb EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HG-A9SC-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 92b94d3d32a273fbc4164cc64c3701e4.bam 4645221647 92b94d3d32a273fbc4164cc64c3701e4 bf8af6ed-dffe-46f7-9f1e-8a65f8e348ee d86e6264-20e0-400d-bf12-2ef6cd998dc5 cf87812f-6db6-4592-9842-c62b3e4ff03f 01a0eb11-7ad7-4da2-ba77-91d9c02b6962 HG 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A913-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c228d385ade2a44d75267d0233065c38.bam 3745976666 c228d385ade2a44d75267d0233065c38 c08b5c7c-8ec8-4811-9143-1837370ddd9d 2e0cbe6c-d105-4c4e-8ae6-5bca0d4b658e c9f519b6-73f1-4737-83cb-f5ef208592cd 76cf81fb-771b-43cf-9aa5-8342fd133626 MY 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BL-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BL-01A-11D-A13W-08.2.bam 16693471773 f53f12d6a4bff2ce392bc04a8679305a c1a48018-542e-4ba5-841e-e0b9913adb9c 15cd6298-445f-487a-b50a-04da5002b6ba 03c3fe57-ae85-4e45-9657-c3182ab5e124 4bf03dc9-3776-43f7-b5f8-31e993f59f63 C5 SRS203044 2011-06-19 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-IR-A3L7-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e181464387c3adf4aba8d2b6f835885f.bam 5196974229 e181464387c3adf4aba8d2b6f835885f c1b6a58b-bd39-4fb9-87e6-00e339e1ec4d 0af7301e-afd2-4a54-9421-a69ef71c956e 66229dd6-c771-4455-a90c-c66fb40cf7fe c5375b9e-e0ab-4d77-bdf8-375405a54989 IR 2013-06-08 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RA-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 473031a5159239b496ca975a220fbd41.bam 5684921335 473031a5159239b496ca975a220fbd41 c1d3e16d-115e-4bdb-98fe-6486134587c0 5d134e2a-722b-4e87-93bc-5e9dae4c51c1 ada77320-fd05-4e43-be72-864391044b35 cf39d26f-ae75-40ee-a809-3f48e2558e54 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3NI-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 90aa78928fed2a8621713b0442500687.bam 6243896144 90aa78928fed2a8621713b0442500687 c1e5ccaa-e02b-44d1-970e-460629022953 e3b5f179-5533-4e21-80c8-30e8b2074f2e dac27c24-cdbf-4527-9214-178fde3d098a e949db99-6fe2-48f2-9d45-469a7909ba87 FU 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CK-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5004b48690f50d5f7f038f247c9870cb.bam 5464577614 5004b48690f50d5f7f038f247c9870cb c1fc65ba-f4f4-451e-b622-56462e561aa9 7934ac64-f6c7-4305-b8e3-2443a39b55e7 1c48393e-7de9-42f6-a6f0-2cbfb8359316 b770fe62-36a7-4a89-8091-2fdd7af44dad C5 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A1QT-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-EA-A1QT-01A-11D-A14W-08.3.bam 10076001719 ac9c0ad7e3fdc8f5d693fda54cc1ca60 c248d552-d4fb-41c1-9dca-5929aa8eabe4 d9ee252b-040a-4066-ba74-a9927bcd3197 970b619f-2eb5-4557-a7b8-5def35943c58 f61cfdd1-9055-492b-888b-87b524d3f869 EA 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A3HU-10B-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e3507b9b6d91e12f88ee8c92a279b293.bam 8634879500 e3507b9b6d91e12f88ee8c92a279b293 c25e9c3e-8124-4423-ba7c-554760662239 4d54f9a2-ccf4-4379-ae9e-00d1e01b80dd 9912432e-74bc-4846-93b4-fa2bf8070bd1 aaab0578-2c13-4eca-bfd1-06fb6840756e EA 2013-06-19 2013-06-19 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DG-A2KL-10A-01D-A17W-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 57ca9171061dc9173f48fe7d8a2e2870.bam 6679657632 57ca9171061dc9173f48fe7d8a2e2870 c2859b01-fa4e-4bb5-9bf8-ffced7659188 8b2fc007-7f8e-4f12-b68b-3c19c9911fcc 2da977fc-8b46-4c40-9636-b12fd36a98e4 3a67971e-6297-4128-a1c2-65ec1aa0bbe8 DG 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A5VG-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a97e4cc4d969b7fd99ce5d338dad538d.bam 5209866944 a97e4cc4d969b7fd99ce5d338dad538d c2ad24a5-0980-4b32-bd33-35a9475c76ad abc2974a-e46f-4080-8dea-49c60ee75673 0bd52d75-5113-4ef1-bc75-509f59eaef2b b6979d87-1888-46d4-bceb-767c5a0b71b9 JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RE-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a17910722b9ac5240700cab8f2706dca.bam 5175030635 a17910722b9ac5240700cab8f2706dca c2f285db-4bb9-4519-a583-95b7c0cf13a2 e472c85c-6544-4277-a4f5-64e8199980e1 9aa36ac2-8418-4109-a3c1-63ca8742baab 49b39f9a-a7be-40d3-a3d7-3df579dafaae EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DR-A0ZM-01A-12D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DR-A0ZM-01A-12D-A10S-08.5.bam 15319939412 61cae2bfb297ca065d4b8e51795c91f1 c3d51414-887e-4253-ab47-51ec9228322a 0a3d0def-beb2-4b64-b1a6-4b44d8544896 748aada0-448f-4523-9893-3d9618fdbe18 ef1b5ff8-8623-43c7-b3ec-27bf332e11d3 DR SRS206876 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-JW-A5VL-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1600506a2061e0763aa4c1ad5793cfde.bam 6386629280 1600506a2061e0763aa4c1ad5793cfde c4745220-c778-4fb4-84c1-3325cec5918e 63c6392f-5af1-4586-9b4c-ca1beb09fc9a d1a5b028-ec79-456b-81a1-69838e2922df ca60fb49-741c-4bf2-b381-5a0be5a0569f JW 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2RJ-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c5102c0c98170d651507e8638e748091.bam 6584248755 c5102c0c98170d651507e8638e748091 c48da17d-6c44-4c91-b6bb-aa556e834ae3 725bd1b1-1da8-473b-87c4-43babf0dd4de ccd569e9-dcbe-4280-8c21-6bfe4ce60d7a 0c338e46-f82f-465a-b779-a024f269939d EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HS-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 770158cfc6013ac94fc9f8da9bccadec.bam 7777643521 770158cfc6013ac94fc9f8da9bccadec c53f7fd0-3abb-4d0e-8837-359d9231e275 fbd305fe-ff82-4d41-9d17-34b1ff2f570d 753ee373-fbcf-4349-b9b2-5a41936e27e9 0835fa38-9870-472e-b9a0-2a2652807bc5 EA 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HF-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a6f9b4ac751667817f9547da4444cc61.bam 12690157702 a6f9b4ac751667817f9547da4444cc61 c58b7ad4-78bf-412d-99b1-0126c1c52906 4627ca0c-13cc-45e5-aaa9-e2e7026780b5 085df27c-9bc2-425a-9a49-547d692ea028 79c43439-bc01-4033-85fa-3191a79277c6 C5 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A5YI-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2b99d2de7f4072ff8ab2aa7fb1de5842.bam 4410113496 2b99d2de7f4072ff8ab2aa7fb1de5842 c6165125-c569-4cd2-aaef-3bf705b0330e f75e2c1e-af33-4c30-8df4-57c297cb5e0e 5e972e96-7271-439a-905c-6e308c1ef29e 935a0c11-f6bb-4f54-8635-944ba33adf82 MU 2014-05-30 2014-05-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZX-AA5X-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 223ed0e7a2a28b4888d48e27659ac4b0.bam 8681160540 223ed0e7a2a28b4888d48e27659ac4b0 c648ceaa-ae11-467b-8dde-155c0f26114e d305bae2-19f6-440c-9eb9-f0395a2b3a2d 4756acc0-4e96-44d4-b359-04d64dc7eb84 01bd30a6-0600-4e53-8ef0-bfb5f09fc88d ZX 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A1QT-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-EA-A1QT-10A-01D-A14W-08.3.bam 8728733328 926af1ae9aaa2221d5d223ce87dabacc c7338ad8-3134-48f5-866f-c42493f462a0 839cef74-9ae3-4b76-9b22-46281453831a 970b619f-2eb5-4557-a7b8-5def35943c58 f21bd762-551d-44a8-b9a8-571782094f6c EA 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EX-A69M-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ef2dae0714b09e1b3707f18ee1d55490.bam 8754708150 ef2dae0714b09e1b3707f18ee1d55490 c76f52f6-54b5-444e-93e1-d24a2e0d5a19 41b98960-ba0c-490d-b43d-75d8a1ff9e04 1e4d7755-b971-4c6e-a2b9-dd83d92bc4c9 be647e6a-0068-40d5-9649-a08c7ad849a1 EX 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A4BA-01A-21D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e71b9cfb77d10bd244a537a2df55b1b8.bam 4852813478 e71b9cfb77d10bd244a537a2df55b1b8 c817ac65-d273-4023-a663-bf9823834d8b 2c562265-1507-4db5-a860-7f5957062943 9e79059f-3453-4aa6-9849-55a267c711a4 26cf8464-c376-4c53-8e41-35e9ab326f0e EA 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CH-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2d5ba0d0caf129cb6ff661add1aa548a.bam 6177719503 2d5ba0d0caf129cb6ff661add1aa548a c82c17ed-93fb-4edf-9723-a6f48d9876cc 053a4c1d-56e5-474e-bedf-171f1ee2bff4 d626a732-af64-4dec-b4bf-3cb761bf4c8d ce004e44-63f5-403f-8bd7-2ed8dace6a3e C5 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HQ-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 290d582ed431b174031b61e2fbe96009.bam 10002642163 290d582ed431b174031b61e2fbe96009 c82b6b48-3400-4942-b7d9-095b981e0f18 52acd6b9-e95e-47ff-933e-eaa927aa6cfd 6bf00b63-89f8-420c-8d36-f680fb0908b1 e4b391d9-2f3e-474c-afa0-fdf4fd11fdf9 EA 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3TX-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5ba1bf0f416bb253f9eb7764b1688ed9.bam 6640609354 5ba1bf0f416bb253f9eb7764b1688ed9 c8350120-a6f0-4720-9ed6-a0565e3cd117 c7b0f4c0-04d4-4fce-b0ac-bb10ef01605c b75644c2-b515-41ce-9b03-842ef5208a17 7b4b0f8f-f929-4bff-9728-2cbdf071d6e8 FU 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A50E-01A-21D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8d7b032a63d02ab2359625a6e5aeaca3.bam 5381825410 8d7b032a63d02ab2359625a6e5aeaca3 c84f85a7-1316-401e-ab3f-b6ca005b5512 0cb0dca2-8294-42fe-aec0-02c8ce379e31 6a18d184-d3a2-49c2-bd4b-9c18f91b98c7 cc589e45-a94f-4065-a705-8110f7de68cb EA 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXB-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2cdb2d88eca9f1821e90f49e3c2d99eb.bam 8854399842 2cdb2d88eca9f1821e90f49e3c2d99eb c85d3dec-63f1-4b00-b434-bcfad840058b dd0406f2-00f9-4f8e-9a9b-193b66a7c303 88f0aa4a-6bfd-4573-b136-58f84f867f10 65cf8a15-a1f6-4e86-b42f-3e52296d169f ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-GH-A9DA-01A-21D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 545ef7c8753511f0b5384d7314608ee1.bam 3944721752 545ef7c8753511f0b5384d7314608ee1 c8e26ad3-5acb-41e2-a45c-718e74291d69 b515a346-d001-4a51-a6f1-44649ad7e1c7 67195401-9099-4ca9-9790-f42bcb815289 bb5ef93f-c950-482b-b77d-4b0974c1b57d GH 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A3JK-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 01a1ed50458ce9f1fbc171f0df629291.bam 6927171537 01a1ed50458ce9f1fbc171f0df629291 cb006bfc-a086-433b-8b9b-750f185f1043 efaa9ff8-bd77-417b-b6f6-232110c585aa 7c4cd55f-750e-4941-a9f3-0632a75d6531 88c6e5cb-d33e-4042-be7b-12a081acdafb HM 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V2-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 0637151f53553467d8d8d815af33a9db.bam 5629324887 0637151f53553467d8d8d815af33a9db cb043cba-f666-4912-a159-3eecdfbd53aa ad2332b5-5b07-4101-b8bf-4b58a2215e52 03804f9b-df7c-462c-8984-8eb3a5ed4999 80c5ed15-bee5-4d36-b8fa-06dc70ab42e9 VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QH-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 01b86c2a26ce2548021c30c956694ced.bam 5773434323 01b86c2a26ce2548021c30c956694ced cb4137ba-1eb5-4fa6-b616-5d2ba5800669 0d0fabb0-2264-41d5-9245-ec752aa48af2 c4f61715-ee58-4799-a5f4-0f5e27c4093d 4512fa54-e68b-4418-b79a-7a38b5cb8435 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A3GJ-11A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 256b262894c1775b7004bddfa9182960.bam 3576174757 256b262894c1775b7004bddfa9182960 cb6b0acc-875a-47d2-a83b-871042a095e8 f27085a9-4270-498d-bbac-d8314d57bb38 deda68dd-e9ad-45cc-9dbb-1c5836ef6519 d21c9094-664f-49dc-8768-178d56256b45 EK 2013-06-07 2013-06-07 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3WB-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 024281e4ae144a27aeca510b2fb5bbba.bam 7376308516 024281e4ae144a27aeca510b2fb5bbba cba5cf40-4ca1-49e8-b8bd-41373da3231b 08d5bef0-b055-4479-b56c-cd716d6b6a95 6868ba1d-b612-454c-8146-74af2f573d76 0334b0b7-115e-40a0-960b-6a3365cda3ad FU 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5ZD-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 918f927b519fd24e908130d1cf262f9c.bam 4527610188 918f927b519fd24e908130d1cf262f9c cd290f30-c59b-4145-9344-4fa60878d792 b8a74f15-4ec7-45dd-809b-4460c734ee33 35d677b6-0487-44d3-bbba-651eac7e0635 f5451a26-60a7-4e62-b0a6-8e92cb051662 EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CM-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 19eb17a404707d2f20b8d93582091b80.bam 5009205210 19eb17a404707d2f20b8d93582091b80 cd2b2881-2236-4085-bb0c-bf651a9bf46c 51e9d5d1-a9e9-4e3b-ab09-b2621e159d87 d223ff09-b80b-4368-9d80-a59dfbe4d820 361211e0-9c97-4ec6-aa9c-d6c3a7552ad0 C5 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3HZ-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 96a32e09ff68c315c92d0d860006ab47.bam 5290384456 96a32e09ff68c315c92d0d860006ab47 cd475e45-1251-4cd9-a8a5-91498a1c861a 2dd3e992-bac4-48ec-92b4-07797eb87746 6ff12a54-10da-4941-bfea-7b66e19b4be9 11958c14-eaf7-49cf-97ce-686341dd94c0 FU 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R2-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 598a4ebdf076288fc40b4b4e2c99f412.bam 5219684334 598a4ebdf076288fc40b4b4e2c99f412 ce3a5307-7930-4fd9-b533-18521a6f7981 ae505e41-657f-4eb3-bdb1-61094063cad5 f3cbadb3-3b83-47cd-b8a0-b0e10343a295 5d9ece22-0baf-493f-b8d6-0ca227faaf05 Q1 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3NI-01A-11D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 660edfb2d63e66e58ecca66a204258ed.bam 6638251873 660edfb2d63e66e58ecca66a204258ed ce9c5b41-c602-466c-8038-fdcbdebaea08 6e026274-d385-4564-a813-d5e45e310088 dac27c24-cdbf-4527-9214-178fde3d098a c75c6fd3-79ef-48b8-b3bd-d097ef2a73ad FU 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MK-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MK-10A-01D-A14W-08.3.bam 9388197723 fae08468638aa726636fb5aa18f41d02 ced067bb-b4c5-4a12-8f41-b3f33cd3e6c8 68a8e30b-8f14-4835-bd71-f46248ff5495 b726f18b-b996-4978-9f27-b3a540e06270 bba1013b-00cb-4ab8-9621-00d31e6176d0 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-HG-A9SC-01A-21D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 6cf48282d909c96a8decc36cc1613155.bam 6717853700 6cf48282d909c96a8decc36cc1613155 ceeaff18-e5cb-4f42-8d3d-77e4b19e7528 71705029-b93c-4a16-b072-c9fe4feb18bd cf87812f-6db6-4592-9842-c62b3e4ff03f 73d6b105-5623-42e2-9fa6-303d393d27b9 HG 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A2LX-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b935b97de21490e64d2c85ea60e83742.bam 6290134334 b935b97de21490e64d2c85ea60e83742 cf6d6a6d-d977-49f8-aa84-b43bc11e90e0 70f7d57a-4b25-4f5b-8e29-115dda15aaf8 b82f4c6d-530f-4b0e-8f33-995633cb254a 9d41477d-8b08-46ba-abdd-865bbaad1f81 C5 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EK-A2PM-10A-01D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 776792a2ac583c188eb3dda0aae374dd.bam 6213678988 776792a2ac583c188eb3dda0aae374dd d009c82b-2d3c-48ce-8905-5cd0a91be871 a4c74f12-0942-4f62-a6e3-bca6765ead1b 085fb6d8-6265-484e-9307-8292386714b7 b62127dc-8526-4099-afc3-be2e295c7dee EK 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EH-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3f5807e42065a200bb33382e87bad824.bam 7964594671 3f5807e42065a200bb33382e87bad824 d0681486-ab20-47f9-b913-b93ac1e092b3 5ad01d0b-c282-4d12-a792-134c24638c8d 05026179-b1da-411e-a286-89727b1ae380 cc7d1f35-2c07-42dc-b2b0-98d404dfaba8 VS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A3JJ-01A-21D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bb785efa00ba76ad28c8b752b91c11d8.bam 5519098009 bb785efa00ba76ad28c8b752b91c11d8 d08a644b-dbb8-41e2-b3ca-3884f731847a c0addff5-04c1-4eef-afab-12566d18015f f150d999-cdec-427e-b8b2-00731c648989 5ccb1fce-2ed1-4d92-87d7-b5855275e3bb HM 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A8JM-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 17afaa5eacb08a27349b45b31a19bac3.bam 8218102172 17afaa5eacb08a27349b45b31a19bac3 d15c3350-c932-48a7-a4c7-dbb07f3a0851 81dada5e-898e-4be3-941f-cdb54ab4568d 1d730565-ffa9-4cc7-a713-c4b5b7bbb29f e6a85874-42ce-42eb-b289-4eecb7acc87e MU 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BK-01B-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BK-01B-11D-A13W-08.2.bam 17859759853 86e434549a36ec3fbdaf3e4f5c9eeefd d16b8db7-c880-4ad4-a3e7-1fc653f25d75 5d43e632-5604-499e-b014-43c85681529a 7df6c297-f2d6-43ef-973b-1f95676b0cc4 f23956c1-df69-40a4-bf11-aecba194f78c C5 SRS203035 2011-06-20 2011-06-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2RB-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 329749d4af60c5e32c5d7e74d2e757f1.bam 6736543338 329749d4af60c5e32c5d7e74d2e757f1 d1a06bd0-0852-4393-8dfd-349f89497cfa 4f7ace06-cf96-4991-97de-56125566dc98 f92a994d-b080-42c9-966f-34c1000865e3 8254cf9e-5176-4649-b8f5-a6f61ead3cd6 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V4-01A-12D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 16e31f90e2805b6a8c798a7019d88609.bam 12541747358 16e31f90e2805b6a8c798a7019d88609 d2654162-b44c-41c9-953a-06f170583eab cdcef515-c2b9-4610-b0ce-1faaa82cc29a 778389ba-c2e9-47d4-b133-6f4d0e689b34 fe295fcf-e3d5-4121-8833-901dcec5294c VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MQ-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MQ-01A-11D-A14W-08.3.bam 10013724157 84db98cf8730495ee76528285b0d28b8 d279cb92-9848-44b5-89b1-377667a8b6e6 5091f550-7ae6-45c2-bceb-725cbf51852c eb59cf69-1997-41b9-bf69-69ad7da292a1 f5fc27d9-4949-43e9-b358-78cb69d87a3c C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2RC-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 627201cd597ef698d4b90ca7e3881bbf.bam 6636444151 627201cd597ef698d4b90ca7e3881bbf d27af2c2-626c-4cb0-9ab5-3cba1d25e4c2 fd67384e-9fac-44c1-879d-cddd500848ca ac0ae100-8072-47cc-81d9-8b52b1bf9236 0e8c70c9-1e73-4173-b82f-e5df1cae8bc2 EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A6W2-06A-22D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TM Metastatic DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 75797cead322b9d7b6c248ca33914bb8.bam 5993639586 75797cead322b9d7b6c248ca33914bb8 d349c9ef-4649-4639-9cd4-a7472faea96e cc483fba-c11e-4ac3-bcc6-a350fc2f935e 929505f7-0270-475e-a9d6-00bf38dc78ba cb0ce562-7679-4843-9b4a-fb245280a45b HM 2014-04-02 2014-04-02 2016-01-04 Live 06 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HS-10B-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b44fc8559c35082f4f4baec804450e6c.bam 7124421209 b44fc8559c35082f4f4baec804450e6c d383f0ac-d805-4826-975f-3a0db4879699 c52c4f9c-9c53-4818-b05c-67a94be88e56 753ee373-fbcf-4349-b9b2-5a41936e27e9 241d9f57-d791-41b8-8450-62543149792b EA 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A3Q0-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 07cdd313ef0bc1ae565a0afc0d2786a5.bam 6986805287 07cdd313ef0bc1ae565a0afc0d2786a5 d3b8bcb5-b3b2-49f9-acb4-7ef4d6b8779a bbc15cac-a3bb-4f25-beec-37c43caeeed1 20280122-a66a-4c83-8f25-0b9d97558dc2 3e3551f6-66dc-4f55-97c4-a7741e412cea JX 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A907-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build df7cef07b86e579463637b0994c5a8b6.bam 5447334308 df7cef07b86e579463637b0994c5a8b6 d405d413-062a-4139-9da6-2bc3fa1d8e6d 3e1d5fd0-73b5-4b18-991b-17e2e46ecf33 c92696ba-f549-480d-8d4a-5f23b27aa336 a1191820-1a2e-4a89-ac61-006d22b52d15 C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA41-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3ca9caa610de513e2b0fd849369d5b14.bam 3698354721 3ca9caa610de513e2b0fd849369d5b14 d48601a0-79bf-49c2-8299-fd9b59e12125 3076d13b-25de-476b-9daf-b49fb396cacb 81658ce6-d4a9-4ee0-ae8f-cf2fa8485701 fa033cf0-6015-49c6-8b8a-045d88a21667 MA 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73O-10B-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4bd7e492e0ef55cbdf4f1e3f370709b7.bam 4557658517 4bd7e492e0ef55cbdf4f1e3f370709b7 d504cb39-4ee4-47da-a6be-23f995bfbe87 f2944d8a-e329-4e1b-aa51-3596ef6dd807 d0cbe668-5c95-4261-a1e8-cef55093a0f7 407e6344-7cd5-4739-9257-6d0e5b071b70 Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HD-01B-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 446f35445214dc5665bee94ca731faca.bam 13541423060 446f35445214dc5665bee94ca731faca d534bee4-59be-4552-8bd7-d30a26fbbdce c8d29518-a652-4a57-ae67-a1c223f02851 12427b02-6e3f-461c-b271-6ab230f628e7 56aa88c8-af6d-42be-8672-074476f6575a C5 2013-06-08 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DR-A0ZL-01A-11D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DR-A0ZL-01A-11D-A10S-08.4.bam 16957118467 859fe3971893152ccbb01665e3faea25 d5a86e81-61bf-408d-bab7-27afaa3f2cbe 6e88a707-20f2-4cee-a1f4-21dd68ea49b8 36605f5f-245c-41e5-a9db-705373da7923 11a01213-e1c4-4f74-b9c8-736d3e68ee62 DR SRS206867 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A8ZZ-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a870348ae4993ee504337ff33ef5270a.bam 5451028950 a870348ae4993ee504337ff33ef5270a d5bdc4c3-a183-46f1-ab2d-8ba947c057e5 5d99d6cf-e850-4bcc-850d-c1cf184cdee1 33bc6504-d9ab-4b64-a87c-012915f36644 9a0bd090-1c58-4a83-82a1-5c6c620752cd C5 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QC-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c14cefd81a01fbcb8754db41ab8c59de.bam 6312608654 c14cefd81a01fbcb8754db41ab8c59de d691a749-a39c-426d-8d71-c044541ae618 9c8f45a5-eb42-4a00-8e4d-5b9f1d1c73b1 cb695fdd-381e-4c00-836e-0ba27e32176b 6bcd780e-ff97-49fb-9084-287c61db05e5 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-PN-A8MA-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3faa92a4ac2ac9c95b698c74b3993c89.bam 7425543328 3faa92a4ac2ac9c95b698c74b3993c89 d6d5f2da-82bd-4ca6-b32e-8c25aa065532 8891492f-678a-4eca-9687-c35700ca0ad4 55add854-e63f-4335-bea9-23c3eb1e766a 681a4ab9-daed-498b-9bd2-7ab2ee04dc37 PN 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7X5-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f26305515f90fe146395b63bab4c442f.bam 8455728014 f26305515f90fe146395b63bab4c442f d70efdf5-610d-4275-b58a-e6ed0349566f b9fd2816-d66c-4466-a14c-d5f74b38880f aed93a3a-7dcb-4ba9-84c0-bc735cbd545f 52ae8fbb-6130-4c9b-b484-e8e6401a46dc C5 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A20A-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A20A-10A-01D-A14W-08.3.bam 9991807017 cdada927b449417905ea8f0c6ab8600f d79c1a44-a6f3-4d7c-983b-3b6bc22a2ed0 76996ad8-2d20-4af4-88c2-67aad56b06a3 f40468de-3b86-4922-9951-f8ae28da6af0 4dfbc5e5-6bfc-4334-84c6-57cfb510c7bd BI 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-JW-A5VK-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bd9ab3bd1ed9d6956b21c55c5afcd6c3.bam 6494779528 bd9ab3bd1ed9d6956b21c55c5afcd6c3 d800a5b3-18a1-415e-be5a-535b9b4eee7e 9c42d657-7aff-46d2-a208-bca4a24027de bbb96b5a-80e8-4542-80b4-2444cf1fe51e 686b057c-0f8b-4123-836a-aacdb07f2883 JW 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DR-A0ZM-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DR-A0ZM-10A-01D-A10S-08.4.bam 16969520072 6d9990384f73535175091c8420efef07 d8a3f329-0711-4bf3-8072-ba32b873d051 c1ad28fe-984a-4158-aaaa-bdb09b70d86b 748aada0-448f-4523-9893-3d9618fdbe18 8fa13d7a-6089-4110-a4ec-b97a08e90222 DR SRS206882 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A9UD-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 989fbb8c5efe92035c76d9762e820e63.bam 11050600465 989fbb8c5efe92035c76d9762e820e63 d9346d34-d4de-4465-9fbb-d20ced9701cf 5865a7c4-e80d-499d-af90-e56db3f42125 60cfa29f-4770-4ee4-aa37-787f53155662 0297296c-67da-430d-bb1d-6c21435e37c1 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8YT-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f3976f6b1380b1d497efd9de5cec5420.bam 6502360718 f3976f6b1380b1d497efd9de5cec5420 d9c6fb9a-f7f6-43ff-a80d-4a9c61c19758 7ed6d314-cdd3-4b96-96e8-6aab1d69c4dd cecaecb4-51ef-407d-a882-0e4b444b0a77 289e659b-b352-49e5-ae7c-02f5914e8876 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3EO-11A-13D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 597b79a03ebf31a137a5046210d336b6.bam 5794651532 597b79a03ebf31a137a5046210d336b6 d9df4edd-71c8-499d-b289-2e2552eb24bf 400d56d0-c2e8-4ab4-b22c-1b39bb7cdc61 b7f2958f-256e-4c30-9c61-11e76ddb36ba b4c02b0c-1abe-4c3f-be7c-5de397efac95 FU 2013-06-07 2013-06-07 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A952-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 689e64bb3e7c5d266846cf80ce3b45e9.bam 5932646558 689e64bb3e7c5d266846cf80ce3b45e9 da4385e0-a34d-4a61-9757-87db126f7f47 fbaf8030-0d3b-4d00-ac7a-502276d4e928 9fa42fe6-ccd0-4850-b08b-97b20eceb8df db8e6c68-cf0c-451a-a8c1-fb63a26592c2 VS 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-A8QR-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 222baeb6748a914f90e794a5ea925dde.bam 4745982276 222baeb6748a914f90e794a5ea925dde db65065a-45ab-47ed-8a8d-e1100323a92d acfd645f-fbea-48c0-a7bd-8fe0cdb63891 db44488e-4ed0-4082-bca0-bbfd22ff0537 4d0d6373-ee8f-4b79-badb-1f2121a98028 ZJ 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA42-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 440a02cbb3f902858469f8bae2f19ce7.bam 6542087941 440a02cbb3f902858469f8bae2f19ce7 db95d458-2fce-43e9-8bba-60b05c504793 165fa756-b3d5-49b6-ad00-07060d048e2d da5fcb99-16b4-4f9e-8602-d6a6192875ef a3b5bb67-e320-4bb0-b694-3eede4bab9e6 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DW-10B-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build bf7a193e1e06c09f64df6a342d1c769a.bam 6569609798 bf7a193e1e06c09f64df6a342d1c769a dba29965-5b4e-4abf-81dd-92cf5e635741 0f908e54-7301-47ea-880f-95dbcded8f62 5dbd5436-696e-40fa-881b-c2386573ac68 ff1f9b5b-93ed-4eb0-81f0-ac9bf6db3767 Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7CL-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4ce472f2e5dd51db52c5ac873d437e5c.bam 4858915321 4ce472f2e5dd51db52c5ac873d437e5c dc063f39-e064-4b91-b08b-cb7642c7305f 7f762575-e13b-4901-afd9-c1eb92ff718f bae2af5e-484a-44f7-ad6b-66137cdae300 695043a5-66da-4b86-8540-6aca605aec86 C5 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A5U2-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d04422483048b9012d4b819dc5547cc0.bam 3935338783 d04422483048b9012d4b819dc5547cc0 dc67299b-0d21-4e30-9799-01c2b1931611 2bc8a678-99d2-4051-8e89-d874215f5d2d 1ef20703-3684-4b43-a31f-892073208377 3dd3b3ad-a367-4d9c-984e-d306ee6b7a47 LP 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8EK-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e6e7db6b111263ca6a72d414ae5140b7.bam 6198642892 e6e7db6b111263ca6a72d414ae5140b7 dcbc85ed-930b-49f6-b2b5-174cf790e4ed 4df9235b-29a4-436b-9af0-9e8a466fe559 d9c2ca21-f1a6-4cf4-be28-6c2492dd38e5 4dfaa93e-160e-48fb-ac84-9dd959e632b9 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73R-10B-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ac4aa0372d5f9165570ee3d8375a8a09.bam 5353557131 ac4aa0372d5f9165570ee3d8375a8a09 dcdfc4bd-bfb4-4d1d-8d23-f5f7dc5ba7f0 ba1d4010-a849-4c5f-a482-29e1898f03f5 d9b0ac5a-811d-4305-bb1c-a965bd389ce4 4217d0fe-7bff-4b06-ab31-b829be80cb8b Q1 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LA-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build c622a3b68567452c3a59c9f2216781d6.bam 5869630667 c622a3b68567452c3a59c9f2216781d6 dd351b57-b2c7-43ee-b33d-d62a0b18fc1c ee0f12d6-333d-4e0b-8d4d-266025e9e71a 7b8c04d7-824d-493d-8f2c-9ed87a907192 d0ebb92c-01a5-4486-a39f-6c89187ac640 IR 2013-05-28 2013-05-28 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9V4-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a709b03b1f8adaaab034d0e4be924088.bam 8140736056 a709b03b1f8adaaab034d0e4be924088 dd82bd07-fcda-4287-ba72-edabf228453c 94e6b1e2-b26d-4a7e-9926-1d350ddcebff 778389ba-c2e9-47d4-b133-6f4d0e689b34 64f7545e-ebf2-4d33-8260-34748f1a1c81 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A5R3-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3d48f81b1916704edf9dfebfec6ec03b.bam 6536162636 3d48f81b1916704edf9dfebfec6ec03b dd9960d4-9c35-41ac-97bd-96806f45d7ef 683d0637-fdc9-4afd-8338-bb1fdbcb5026 73aa428a-4288-45f8-8a53-cec173dcc61f 3671d7c8-af2d-44a8-a3b1-da74ad6ccda2 Q1 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PF-01A-11D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 15d5856ca18b89468b32a24d25605235.bam 6035820663 15d5856ca18b89468b32a24d25605235 df525dd4-2336-436d-9847-cb9e0b291a46 34765b04-74bb-4a00-b9f6-52bb26ee8ad7 1451821e-dd49-41fa-a52e-32f8524ffe82 c0ace01f-ba75-4fcc-a95d-8ed9c24596a8 UC 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-XS-A8TJ-01A-11D-A36J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1445e3f8dafbad4e47e724604a6381b5.bam 7637253575 1445e3f8dafbad4e47e724604a6381b5 df700910-90e6-4da8-85e2-d997a053d146 c44d96b7-db9b-4f3a-a605-81eb31e91b8f ffd8d31f-bc4b-4e19-bbaf-0e26e9f3a107 784c1b78-e1bc-4a01-b895-9cc6483436d1 XS 2014-07-30 2014-07-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXA-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 63d32953d4588039facb9509a2ba6511.bam 5278730412 63d32953d4588039facb9509a2ba6511 df7ce603-e134-42b9-95dc-d41bb716e948 78a492e5-e6d0-409a-919b-ce987aea08e1 e8de2228-3aaa-48ad-a2e4-2940280af6fd 444cded8-685b-4f74-a8b2-9c4b5f777c1d ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73S-10B-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d2c82518d0e84695b9e28928abb0a488.bam 5829539293 d2c82518d0e84695b9e28928abb0a488 df86e69c-7a47-4c29-86af-0627c8685235 79c73ac7-f2c4-425f-b6b2-430a00a96436 b0f63819-fc86-4981-9d92-0115c6de3bce 49db603b-0d9b-4a8c-96e2-46e686aa1b88 Q1 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A5FO-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1389f1043c22823675dfe622739dbc26.bam 4225414113 1389f1043c22823675dfe622739dbc26 df9385fc-29b0-40a2-8341-795b00ca0b47 37be35f5-6f57-49fb-be04-8d0cc014f4db ed17685c-b706-41e4-8a76-11cb0e6700cd 8065920e-db32-4553-8b72-9b4187a512e7 EA 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3QD-01A-32D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 735c8442b96981e5c38215beb5112080.bam 6604961744 735c8442b96981e5c38215beb5112080 e01fb3e9-5133-40e6-8d10-12bff5b68c37 af4a9109-60a7-4fb5-8ea3-b5251f608b3c 9e2e29e8-d94a-499f-a98a-5b53b2c38f3b 987e1913-a506-4a06-b247-9ff778ce552b EA 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A5U2-01A-11D-A28B-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ba9728cd5f86d96524d0aa02570c304f.bam 5256553628 ba9728cd5f86d96524d0aa02570c304f e0724289-c5a5-4901-bf06-f0e63f90f01f 74b18995-a18c-48d8-8838-669f3cb22935 1ef20703-3684-4b43-a31f-892073208377 cbdbe0d3-b3b3-4990-be3a-9af8360889d8 LP 2013-08-14 2013-08-14 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UO-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 27a25d2cc0afcda50893415e7b62a47a.bam 10091066653 27a25d2cc0afcda50893415e7b62a47a e1380ebd-75e3-4209-b48f-db38063cd45e 485385d6-17a5-4b33-8f26-ce832faac779 4da121da-9193-4ac5-8206-03cb1f7c2c14 729b1d94-980f-4c94-a154-64283241fff5 VS 2015-01-12 2015-01-12 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8Q9-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2dd0f9c863dea57332240abc3151a308.bam 5955180623 2dd0f9c863dea57332240abc3151a308 e14081a2-3d45-427a-bf7e-1e06e150a93e 39d60425-160f-4823-8d71-f6939c49888f 5798d741-c198-4c14-bcc2-e3b17caf1be3 3413e317-f775-4ff5-9f77-25c244b32f44 VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M8-01A-21D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M8-01A-21D-A13W-08.2.bam 17070047582 b913091f1b2764ceb7eea52e489b22e7 e16225ac-3b5d-4213-804c-0ac0f61059fb 24099828-5f1b-4004-b6ec-52eb184d7a54 110cd100-5730-4873-9fab-2ae6c8732062 72ff7605-0905-4829-8b54-b76b45fbb0df C5 SRS203089 2011-06-20 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-C5-A7UH-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7ee5a028a6bc0812b1b10aec200b57ac.bam 5870413681 7ee5a028a6bc0812b1b10aec200b57ac e1aa33e4-537a-478a-802e-7bfba8bac865 c0518dec-272d-459f-a57b-10a2a577dc1c 8328925e-3324-4188-85f1-6ffbf819d9e7 40997e45-d331-42e8-bc01-13ecb25e6e28 C5 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MP-10A-01D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MP-10A-01D-A14W-08.3.bam 9552460332 3007eceb93dde89e031783101ac09d72 e21f46d2-6156-4b7e-a9ec-3002842ba20b 3bb2b2a1-d6a2-40a9-8193-897a3d03d771 08a52bcf-d2e9-497b-938a-4660c332e914 6a5e47c7-ae7d-49fa-8851-2c523b4a7d25 C5 2012-06-08 2012-06-08 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-HM-A6W2-10A-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 404b4b586a003e83d18d853fa1640a88.bam 6271280863 404b4b586a003e83d18d853fa1640a88 e2ce477f-18f9-46f5-9298-cfa7ef5d023d cd89b294-bf23-495d-a809-4ba324acc1ec 929505f7-0270-475e-a9d6-00bf38dc78ba 69b47bce-f0d3-4a27-bfb1-56e66cd23438 HM 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-WL-A834-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9aa55b9f2bc7df4bd90e65e89f689804.bam 5565347149 9aa55b9f2bc7df4bd90e65e89f689804 e33b6fed-8d1e-4ff5-896e-8b83428ed653 bcbc833b-04a1-4bf0-af6c-57b5f0b15f69 48d81b1e-cd75-4b55-a0b2-c331be2a88ae 75af3364-fa0a-4c85-9017-b9c1ae1a5f08 WL 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3LB-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 7856516267498d867f20f90f0c989e57.bam 6081742776 7856516267498d867f20f90f0c989e57 e44aac93-17a9-4e6c-b7af-4f9986ef44f6 44a3f604-288d-419f-b3fe-cf02924d7cbe e7c7783c-1d0f-4f42-a4cf-518825e91d91 ba226de0-7a7c-42dc-84a4-10c0cf798244 IR 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A40J-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b61eb914faa707ccc5cc38bf8e2eb640.bam 6579958604 b61eb914faa707ccc5cc38bf8e2eb640 e4fcacf4-5637-4a73-a365-5ff2af6fb26b 22622949-a302-41a5-be56-040320a61c74 63dcfa32-c69e-45ad-bea3-ae672acb11c6 a18a106c-712f-4161-9227-a0659d23d648 FU 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-HM-A4S6-11A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fd584bf340cab66b37bd6a929d7109ca.bam 5291332215 fd584bf340cab66b37bd6a929d7109ca e595b33f-0f92-4770-8763-61aa7ff2f2e6 470f47b6-2e32-463a-b412-ddc7b611704d 6bcf8b41-7abc-4b6f-899a-1f67b4ada765 bc537528-2802-428c-844d-3dbe1fa7041f HM 2013-08-21 2013-08-21 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A23K-01A-11D-A16O-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-FU-A23K-01A-11D-A16O-08.2.bam 11972111057 b3be9ca61460134adeafa4cc1a12f8b2 e5a342fe-3f01-42ad-a3a5-1038ade6fb27 6b6c8c42-616c-4135-82db-91575d2dda1d 85abfd69-cf72-43f6-a7dd-97056f22c91b 7fe455c5-b312-4f45-be86-294262e0ae7a FU 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-HM-A3JK-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build b389abd83108a1501a7ad3b88b524a93.bam 6115521063 b389abd83108a1501a7ad3b88b524a93 e5af9a51-96d0-4a5e-93c1-c16317c04932 a6f880ce-99d3-4975-a271-5cae1c433e76 7c4cd55f-750e-4941-a9f3-0632a75d6531 113328e5-1a07-45f9-97c0-dec4c28b14db HM 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-AAVH-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cda834e0bf5c533ee207c6089dddd466.bam 6780940821 cda834e0bf5c533ee207c6089dddd466 e665334a-7838-49d1-b995-c5b969f253bb 5c241056-95b9-4681-8d19-d9455cc02a68 1c0b5c18-8760-4483-a88c-1d1d89f61998 760f36ef-fc23-42f5-bdb2-b0e951ebbb02 JW 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9U7-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 484b1dfd2bcd74a0039e82c5ee6bbe8f.bam 7090731055 484b1dfd2bcd74a0039e82c5ee6bbe8f e6b64dd3-39b8-4e61-a278-0851e489ac85 04651f10-a056-4f49-9726-28b18c95f826 6d01421e-d533-4967-8422-97fbc0fb0895 e56a6902-4a2d-4768-b030-afa41212646a VS 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UC-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build fb349983834f4508d8e9e68e9a5da162.bam 8623494165 fb349983834f4508d8e9e68e9a5da162 e6ea97eb-c21c-43b6-80f5-202e3aa5c6eb b2ce1700-7cd5-4221-a3d0-526f2c9f2717 cca23650-1b06-4977-91e8-f35e73e70c48 74690165-e790-4c44-8c32-49fdc0626ce4 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1M5-01A-11D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1M5-01A-11D-A13W-08.2.bam 16182800382 42be16150d533012b9d9d25ad4dfe440 e7765c51-1536-4e06-9c18-0b7d0dcba291 90369746-5572-4f29-9852-1663cbc0179d 0fec73a1-8d3a-495b-8008-c52f190f4270 2091ea13-7864-462a-8e96-c59e50ede1c0 C5 SRS203062 2011-06-20 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EK-A2PK-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4ba0efd7e71851bf2cd0060a36895a41.bam 5787251190 4ba0efd7e71851bf2cd0060a36895a41 e775ecd9-5104-40c4-81e1-6b68658cb58d b3b3a27c-ee9a-42af-a6d1-9af5970a98b9 0809ba8b-4ab6-4f43-934c-c1ccbc014a7e 5f613800-55df-497f-a544-5b12cb9446ce EK 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA3W-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 21bb4c5378434369ef2cc321652c141e.bam 6407530338 21bb4c5378434369ef2cc321652c141e e809849f-6f83-43a9-9a8a-1792a176216e 1e9ac611-9e4e-46e3-9c69-9fe87a38ecf3 fc2bce29-4685-49f5-b901-2117bf673bb8 948efcc7-118b-44db-a522-c458488c0fa1 MA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MP-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MP-01A-11D-A14W-08.3.bam 9452156718 c95f34dd547bc71f01223e755ae589ab e870297b-1b44-495c-9b30-2bf24578ff28 6abb7bd4-a5e6-42e6-9fb3-c65b8abf8d3d 08a52bcf-d2e9-497b-938a-4660c332e914 73ff6bac-f086-4cf5-a5cb-c3b4a8d28e55 C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-VS-A94X-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f29994b324b2e89e34cf340092698857.bam 8020697559 f29994b324b2e89e34cf340092698857 e98c9249-e9b6-4a62-8dc3-68ac2940a47e 461234c9-fc98-432b-a0f3-c32bf9ecee4d 240ef385-decc-48f7-a798-a81b4ab0410e b3edbb18-0b82-4a64-9b5a-6ef83590317b VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-UC-A7PG-11C-11D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build f85e573ff3cc90bef979efe983675199.bam 7283197027 f85e573ff3cc90bef979efe983675199 e9f940d5-e2c3-404a-bc1e-8f32dd8a5312 51a5f0ff-c933-43d0-9b32-3a603fd09253 53d99a89-6ebd-4637-91db-7ce43ebc6b8b 8b52ee44-e43b-45fa-a978-ea4fe9068a67 UC 2014-11-27 2014-11-26 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WI-01A-12D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4911f64fb4e718be1d336c3bc17c1493.bam 7629822982 4911f64fb4e718be1d336c3bc17c1493 eaad4fbb-5100-4db6-9e16-4e5b32b43176 4167b53e-960b-412e-b556-4fe236a9c990 c14468eb-e725-4029-96cc-75bb9ebd9def 062963b0-87d9-4d01-907f-ce9eaa7bf1c5 DS 2014-04-21 2014-04-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-2W-A8YY-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 191e1f11c562128d1f2afb31f50e73b5.bam 5626533436 191e1f11c562128d1f2afb31f50e73b5 ec3ad992-1cde-40d9-9eb6-416fe585a943 cb555188-fed4-40d8-8329-aa8ba7a57b7e 5aeac31a-176a-4f93-a376-a93a670821bb c9afd150-ea3a-4219-b634-6e097c3b2a4f 2W 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MN-01A-11D-A14W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MN-01A-11D-A14W-08.3.bam 9189001011 be5b66a908ff0a6847cd4ef94ad19715 ec842b9c-7f0a-4fe9-a8fb-650dc615e432 a31ce2af-48b0-4a05-b99a-79ae57d8ba6c 287ce10e-31c8-4b10-9858-6e45451dfbe4 6bad5bce-c734-47eb-85f0-d804022578ce C5 2012-06-08 2012-06-08 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-XS-A8TJ-10A-01D-A36M-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2255afd0f1759900f06adc57acd1af89.bam 6242238877 2255afd0f1759900f06adc57acd1af89 ed72a242-908d-4ef0-953e-92c61f84cf39 0b5fe505-d056-4242-b8ae-7aa0a7b0e540 ffd8d31f-bc4b-4e19-bbaf-0e26e9f3a107 e28c0e2e-da46-47eb-ae54-494fdf22dc69 XS 2014-07-30 2014-07-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A7WF-10A-01D-A351-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2752f06c95b554db7f4e2fcf28c65356.bam 6900088947 2752f06c95b554db7f4e2fcf28c65356 ed85014b-4e19-4082-a77c-a7637ea859cf 06845338-4ebd-46d8-8392-097e6b77dfde d02ffaa9-0403-4a89-be01-cce35c80dd69 2d83b77b-9140-4554-a436-e43c1f36dc98 DS 2014-04-21 2014-04-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JW-A69B-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 83303a3a47422e828ffc09c4b31e958f.bam 4608687555 83303a3a47422e828ffc09c4b31e958f ee06a945-c892-4226-a076-05a0c4e50738 8f6180ec-2423-415c-ab25-7a8ee6ac5176 fb4af6b2-4bed-4dbe-9309-29f59ed30fb2 bdcffdb1-2753-4211-adc2-57a0cb363ca3 JW 2014-04-22 2014-04-22 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BQ-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cd0863a1de575e604a74ca1bb4f5a149.bam 12126086087 cd0863a1de575e604a74ca1bb4f5a149 ee0f9972-b350-40f0-9551-7839ab18bf3e 1fb15f75-d4fd-40f5-8fd1-3169149fbf40 e77c3f70-08d1-40d3-b038-f09a519423cc 5e2f8194-f97f-4afe-b68d-6af81a516288 C5 2013-06-08 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EX-A1H5-01A-31D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-EX-A1H5-01A-31D-A13W-08.2.bam 18480272575 92dd2be902f217becf02f4c69cc7be66 ee1a8473-ac67-4277-a3c8-b2c289e87add 679411e8-ac8e-4d12-b15d-a2a3fac880c8 6b74c07a-9932-4a80-8296-9db08d0c6964 85452b47-1cdd-42fd-8802-0fd2e6f51a4d EX SRS208628 2011-06-22 2011-06-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-IR-A3LH-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1af85774628e02866e3365f36c8cda8f.bam 4666872521 1af85774628e02866e3365f36c8cda8f ee296ac2-58e7-44a2-b014-43aaca250fc4 f578da11-7920-4c6b-90b0-e1e88da344f9 f24ed9c0-92bb-4003-86d2-42ab26617a05 603dd19a-bbc4-4442-879c-f012c469f83b IR 2013-08-16 2013-08-16 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-IR-A3L7-01A-21D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ac72d0e13177a0c5abb516baa3e40c1c.bam 3791834469 ac72d0e13177a0c5abb516baa3e40c1c ee3794d2-6be2-4265-9bda-2051272ee096 3ae4ff71-2436-454a-bd10-33c454f966ef 66229dd6-c771-4455-a90c-c66fb40cf7fe f571523c-758c-4f34-a44b-f8e6a3eebe0f IR 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1MF-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1MF-10A-01D-A13W-08.2.bam 18947348086 fd6cfab69cc338d862407db394ab0d6b ef942161-34e6-438d-afb3-68660c94fb50 2246aadd-79f9-4671-8a35-621949e4b23e 4f514ed4-3be6-44bc-a531-210027846459 6ba81700-3259-45be-9265-991cbef21970 C5 SRS203122 2011-06-21 2011-06-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXI-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 858ac937d016c8ca54ea2098d6eeca5c.bam 6136645102 858ac937d016c8ca54ea2098d6eeca5c efb71050-f79b-478d-bfe9-fdf334c60688 0c63896b-3b48-42a1-85a8-f2a3401c0944 40a86987-e77f-4977-92b1-8217796e1938 6748a073-7a01-44ca-9f9c-fb69b157ace0 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3HR-01A-11D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build dd44d253e61da96546b7c66ba228dc78.bam 7816751995 dd44d253e61da96546b7c66ba228dc78 efb2aa67-4872-42ef-84e4-789f37a7d073 4a771746-0d20-4e77-ba67-a235b9e28d7a 638035f6-2909-4a44-980f-468ac5d74e18 1fbfa952-f272-4531-9f9d-1b8bd1dd0845 EA 2013-06-07 2013-06-07 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A6QX-01A-12D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 88f8212f59e3298c9ab41f74b53f3b0d.bam 6641961672 88f8212f59e3298c9ab41f74b53f3b0d f02f9c5b-56e1-48e0-8ccf-59d5eba721d4 676d4bc5-80c2-4db8-94b1-3dea2aed054a a300db40-e0b8-4c45-abbd-d7aa06211e9c 1387de0a-aa60-4075-8673-fa3eb9ac45de EA 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-JX-A5QV-10A-01D-A28E-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ce3c8d1b3d80530ed573d49d7de6c8cd.bam 5276923878 ce3c8d1b3d80530ed573d49d7de6c8cd f0a7729e-8915-4f80-a79a-18f13c4a0a2e 2d5c7dac-d0d8-4618-96cf-993ef74fc7e9 acf5cbf3-09ca-4f4d-a44e-1792613190fc d37bd344-fe23-4342-b8cb-744f8dea3039 JX 2013-08-14 2013-08-14 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HE-10A-01D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ddd53911c08a307fa870c96891b37e21.bam 7943168393 ddd53911c08a307fa870c96891b37e21 f0afbef0-5c9e-4ab6-a7c5-32c6de69a827 a6eaeac8-9943-4ea1-b40b-ccf53e8544b0 bc63dd2a-b8f6-4b30-a8d7-ce193bcd17f1 58e4b79d-744e-45fe-9836-91d2b2e2c19e C5 2014-05-30 2014-05-30 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A958-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 208bf9b22a4894c5409cae10620e66a3.bam 7890084361 208bf9b22a4894c5409cae10620e66a3 f1198872-2bfb-413a-b9a2-40ac150b9155 66e3e678-28f2-4ac7-8ade-23ddc203013e 97cf3268-9756-4659-9e98-f200f96a91f4 88e101ba-004f-4d11-8463-ada5df909df0 VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MA-AA43-10A-01D-A45U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e560ad7bf7fade2ebeea4949836a77e3.bam 14414403148 e560ad7bf7fade2ebeea4949836a77e3 f11daa59-66b8-4d14-94eb-aa32d2e06715 29d5b6c4-9a2a-45da-9bde-cf8410f4f574 ed74703a-6838-4f4e-9524-d6fb7b208687 a8b9e6f9-ecdb-481f-8b2a-9272a532c20d MA 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A7XC-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 10dcd5022490ba2d3173e706ca6b1db3.bam 5681352667 10dcd5022490ba2d3173e706ca6b1db3 f1d67084-0d3b-44b6-8fd9-e3016510ba8a e69a17ca-8681-4537-9239-f56b6383494a dedfd5fb-3c72-40f9-a7ef-52c2176bf662 10b91fa6-0b02-4108-be64-0e32d3de736b C5 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-BI-A0VS-01A-11D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-BI-A0VS-01A-11D-A10S-08.4.bam 15646886980 6d99c02db7283f84c10beb78c483bf26 f2c931b0-bfe4-409c-b0f0-c5f09a568493 cfd08e6d-ca7c-47ed-a7b1-b9affdaf1190 3923a64a-f8d7-4e3e-9218-cee642da21db 878cf960-b1a7-427d-bf5c-31f145be4501 BI SRS202291 2011-06-07 2011-06-03 2016-01-04 Live 01 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-RA-A741-10B-01D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 25e663782e211092c289582944218f7b.bam 5874551379 25e663782e211092c289582944218f7b f38643ef-d41c-4efc-b8bd-acc522ac19d3 24106164-fe83-4734-ada3-bc3f28c07452 bdad2f13-ede2-4aad-91a4-bf60f8888bf2 c44b1b40-1a10-43c4-b0b8-d3c26108cab3 RA 2014-04-02 2014-04-02 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXU-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 42fd02c2d4cc7ed8eb1a55844d3c009c.bam 8748913444 42fd02c2d4cc7ed8eb1a55844d3c009c f3ac1baf-682f-4f8c-8952-8bd822144271 5a4496fb-ce51-4bb1-8b68-ea175270d040 ddd4b6d2-5be0-4edd-977a-a795eea3c738 fd8c46b4-623f-49b6-a413-094bc9cdb053 ZJ 2015-01-12 2015-01-12 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UZ-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 907ad9c26b518684af841fc3d3e1d2d1.bam 7151501289 907ad9c26b518684af841fc3d3e1d2d1 f438922e-651b-40b1-84d6-d0a2c9969cf2 85dcd532-43ff-4585-8a2c-98a7b5e65f15 6817bb3e-1f8a-457c-9ab0-31ccda8b6868 6176b25a-1ab2-4526-a15f-1883585a4d1a VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BE-01A-21D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3379d20228854c21eafc42fe9bc05dfc.bam 6561493691 3379d20228854c21eafc42fe9bc05dfc f4b6ad56-d2ea-43a3-8a19-573c3c98608b d7c777ea-be05-4bca-966a-479f3d3b0461 f8ab17ec-c365-41a6-a4bc-36653e84bce5 4b0d9159-61fd-44d9-a18b-d0d03def61e1 MY 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A905-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 8883274c325b7009ee6d3ba70c59024b.bam 6452938293 8883274c325b7009ee6d3ba70c59024b f57ccfe9-46f3-415b-879a-13034b4e3d14 0d8f568b-e23e-4748-9ea5-4d362e7dfcc7 c99f476b-e8b1-4cdd-9164-0da450064886 ae60de0b-6db7-4fb1-a335-e4e7babd251b C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AU-01A-32D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 13d92ef76d5e23806b6781720a6c7703.bam 7026897743 13d92ef76d5e23806b6781720a6c7703 f667fa64-ec60-4a31-8666-b900bcb0872a 8a53198f-ee29-4cca-8cb2-9944790bcc53 e15d92a1-6925-4b58-a494-d6f665f67b83 0eeab2b9-8e74-4d25-841f-38634d580a69 LP 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QM-10A-01D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build da4e5c13c2f057576dc8f1767ba08f65.bam 5426181680 da4e5c13c2f057576dc8f1767ba08f65 f66532bb-0877-4939-8ccd-974e7630a715 b0eff242-23ee-4a21-9103-5ba094add9a0 27d2b645-f1bf-4486-b0b5-273681b58625 9b5595f3-61e0-4d0a-b9a2-cce5dac511cb VS 2014-08-18 2014-08-18 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-DS-A0VL-10A-01D-A10S-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-DS-A0VL-10A-01D-A10S-08.4.bam 16193364253 71c2b9e7f3dabee590bf7aff7f8661df f6b58a39-72ed-4821-99f0-49344cb76a18 c1a153fd-d788-4e0f-b1a8-a3052a0f60b6 dfd30f94-19e3-4838-95df-14a3763419af a2c63996-6951-47b8-bbb5-a04c8a66eeec DS SRS206900 2011-06-07 2011-06-03 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-ZJ-AAXB-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a50a491e515b5076a9f80d3b21a6db66.bam 6139689834 a50a491e515b5076a9f80d3b21a6db66 f75aee14-b65a-4e96-9c16-81dfbd48ab85 938ec402-fe08-46ad-a1e2-d488664996b3 88f0aa4a-6bfd-4573-b136-58f84f867f10 55d39f5a-606d-4343-b34d-6b5d152bfde8 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XJ-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e6a413a2f618b70e20e4c59d5f2dba24.bam 4959538710 e6a413a2f618b70e20e4c59d5f2dba24 f846870e-cb55-4676-92dd-8442c89d556d fb55073b-ef99-4146-8c25-c0596a8e1512 e89d0cb1-6ec2-43ee-a6d9-b922b680af34 17e11d4a-17c9-4f67-b1c6-bb715bd79859 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A73P-10B-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 3ff91619f3ab42c2a0747848dfe22d97.bam 7125346122 3ff91619f3ab42c2a0747848dfe22d97 f8c63ea6-d21e-49f3-a3bc-68d38018d1da 53421a70-b8ac-4854-80bd-9cb42930b9fc 3a3a9b5e-12a1-41f5-a54c-d4c1e0eccb9e 1fdf8dc3-43e9-4f29-98d0-ff848684aa1a Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A8XH-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2d4b4e590f0423cda9c91ca7440f72ec.bam 5202561026 2d4b4e590f0423cda9c91ca7440f72ec f8de499b-ce32-43c2-b095-9c3bea5eb8e0 8d19bf65-2077-4bc5-969a-6ef0c03f0bb1 183e8d87-3476-46bc-a989-ed4b09809227 009db85b-200f-4b6c-a5aa-330f9eba2ae1 C5 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AW-01A-11D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 133fd8ca02175352839cbfe8b235d784.bam 8772623901 133fd8ca02175352839cbfe8b235d784 f92cd732-3fd5-46a8-af03-ca5362954d6c 42a70aaa-1ae4-4a80-bb04-d0bf0ed8cf2d 74e47ded-2c00-4455-aaa6-cd662dfbf05e 5bdc56a0-0690-484e-b4bd-2f7ff96277ae LP 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-RA-A741-01A-11D-A33O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build a39451b33caa9be5e5efd47b2370cd17.bam 6385826557 a39451b33caa9be5e5efd47b2370cd17 f948e718-d6ce-471d-926f-039394ef09e9 adc6fd47-b5a4-4db3-8431-0f1f6ec4b808 bdad2f13-ede2-4aad-91a4-bf60f8888bf2 84ca6bcf-2a51-44d4-9c5f-1edaf9a076af RA 2014-04-02 2014-04-02 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-ZJ-AAXN-01A-11D-A42O-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 959ec19fda99e3acca44f2da66b3bbc6.bam 8042935954 959ec19fda99e3acca44f2da66b3bbc6 f95b8673-3f5c-4e50-82cf-c232243a0354 d9ce3d76-6b22-47ad-acb1-13d1e4c1a40a 5f22e050-c172-4f2d-a1f9-6cb749b6ef98 019e7aee-73c9-4330-b4d0-493a97d654b0 ZJ 2014-11-27 2014-11-26 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BF-01A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build cc2993e90031bc524da2f058c80eefd2.bam 8008022829 cc2993e90031bc524da2f058c80eefd2 f9a61000-2550-4079-95c8-4977609b15e9 aa95dabb-5ce6-4379-a7be-300ceaedbd5c 4f4e8834-a716-42e6-bd51-60d80a619202 73a23ceb-31f6-46b5-8007-8462f17e2780 MY 2013-08-21 2013-08-21 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A44S-10A-01D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 98ee25a23829991cc88d6fce190f77b4.bam 7343118569 98ee25a23829991cc88d6fce190f77b4 f9e0f8e6-2547-4769-85a2-3765b9b4657b f918a9be-5c0e-413b-8a6e-c307e8b2ca48 cfb61fd8-0bca-40b4-878c-cc914a289792 110b220d-ed23-483d-9f5a-eb6401bc78e7 EA 2013-08-21 2013-08-21 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A1BI-10A-01D-A13W-08 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS BI ILLUMINA Illumina HG19_Broad_variant C501.TCGA-C5-A1BI-10A-01D-A13W-08.2.bam 18168435376 86eebb34faec93ba9960f47fc26aa739 fa117bad-661c-44af-a400-400f11ca8ed8 c8af942e-74f7-4d67-975b-0b14f9ab768b 91310434-2a99-4e1d-81e6-3d58d097089f 958b7684-0abd-4f94-8c2d-f530690d9952 C5 SRS203023 2011-06-20 2011-06-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam Agilent Custom V2 Exome Bait, 48 RXN X 16 tubes 931070 https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.targetIntervals.bed https://bitbucket.org/cghub/cghub-capture-kit-info/raw/c38c4b9cb500b724de46546fd52f8d532fd9eba9/BI/vendor/Agilent/whole_exome_agilent_1.1_refseq_plus_3_boosters.baitIntervals.bed TCGA TCGA-EA-A43B-10A-01D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2941b4f72787329c8b9f57fa5453d92b.bam 6268216074 2941b4f72787329c8b9f57fa5453d92b fa2625b3-1f97-4f46-8030-b005985feaa3 cbc3126b-456f-4b3a-8364-7c42eb48d5a4 3265f9c1-7242-4c7d-b4ad-b6519ee94f84 7895cace-838b-4d99-bc76-920f0244da8b EA 2013-04-18 2013-04-17 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A97N-10A-01D-A38A-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build e0f83d1e104b1debc91cc201b2f26990.bam 6237438243 e0f83d1e104b1debc91cc201b2f26990 fa481ec8-7277-49c1-a245-c605b74125d5 c6e17fc5-27df-4f47-b7e4-e09df3a8ae54 87e701ab-acfd-45f2-a12e-323c94e5f3d5 19e858be-3211-4f2e-a25f-0f44868bdb2f EA 2014-08-18 2014-08-15 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MU-A5YI-01A-11D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 93ce7fa24fe1703c2370cb5337e8e4eb.bam 5050347555 93ce7fa24fe1703c2370cb5337e8e4eb fa78f5a2-c806-44d6-bb9f-5a7bf1dbfed2 cb846086-f95a-42e7-b182-0841596aafe2 5e972e96-7271-439a-905c-6e308c1ef29e 2f247fcf-363e-4d72-97f7-68765989ff05 MU 2014-05-30 2014-05-30 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A2QG-01A-11D-A18J-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1706f775b6ddf909be9892c6a9889057.bam 7566378835 1706f775b6ddf909be9892c6a9889057 faa7c38b-90cf-41a8-b9d9-b29e79f9538c 581bfb7a-017b-4f4e-aa60-effcc1fefa0e d5d8a818-d689-4c6f-96b0-13f2cb10c3ca 81ae8e2d-e42e-4249-8490-2f36610351cb FU 2012-11-10 2012-11-09 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-LP-A4AX-01A-12D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 2244dde449365764eaab3c445d5be9e5.bam 6412263348 2244dde449365764eaab3c445d5be9e5 fa9f2720-a9bc-40b0-9db9-fb65d2e2f2ad c2dd5816-3dfb-4ad9-b3ca-a619cf70fb23 3223fec6-1d35-419a-8ee9-7c5885b8be1e 067a2e35-52e4-42e2-9c22-db555589c0cf LP 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UT-10A-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9ba743337011b6dfca32fc8fa04b9c7d.bam 6313469834 9ba743337011b6dfca32fc8fa04b9c7d fb2d6086-4831-4e7a-a39f-c55deab3a519 fb5a7746-9376-4d22-a143-62301ec0e04a a945fd96-ffb3-4787-bacd-60da4560c8a5 183ebf1d-1211-41e1-b592-cd4f776d4e3e VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3TQ-01A-11D-A22X-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build d763d6a27e01993590abc524cf4a20b8.bam 7239432519 d763d6a27e01993590abc524cf4a20b8 fb4b9024-9259-4b02-b506-d6d03fc88fd8 f3d51719-25b7-4d5c-807b-89baeb60773b 7218aa6f-3345-484f-a329-a3b6169a67c7 2f3bffb4-2c85-4b72-9af5-4db9dc358ae6 FU 2013-05-28 2013-05-28 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-C5-A3HL-10A-01D-A20U-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 5a268333469aa8350df3ad108b4df9c1.bam 14457792188 5a268333469aa8350df3ad108b4df9c1 fb869423-dd97-4955-9115-f41af5dbec74 43a31144-5227-4461-b012-a2080346c704 09329a53-d58d-4480-95d8-32043e40de6e 794bb890-8431-4860-a6d9-b310918e0b1d C5 2013-06-07 2013-06-07 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A8QC-01A-11D-A37N-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 56f39672c072c2ff2b05d63e46085a9f.bam 5464172798 56f39672c072c2ff2b05d63e46085a9f fc6354f6-0f82-4370-82ab-9e659d7acdb4 4afc70ae-0603-4629-a162-114b0536987c cb695fdd-381e-4c00-836e-0ba27e32176b 047b9b65-ae3a-47a9-9cd5-3bbe05471c8f VS 2014-08-18 2014-08-18 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-MY-A5BF-11A-11D-A26G-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NT Solid Tissue Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 1ae5f01d2e3654db2943b0979cb37841.bam 6215493961 1ae5f01d2e3654db2943b0979cb37841 fca7f3e4-82d3-4049-a1ba-3da5fba763d1 1752ddf4-5edf-4d0d-939b-f05bd37ea865 4f4e8834-a716-42e6-bd51-60d80a619202 25a7f991-7dc2-4d3f-ac77-7676dd071977 MY 2013-08-21 2013-08-21 2016-01-04 Live 11 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3Y4-01A-51D-A243-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4d04a789ce50c2c180748a053367dd4f.bam 6899959249 4d04a789ce50c2c180748a053367dd4f fe24dc03-f82e-45e5-88b3-e506965a6b6e 22c5a391-cf06-4a8c-9a14-c3663eec3a5f 3ac62513-b5f4-4063-aabd-dad08a1f56fb ff97c148-76ba-480e-9456-5dd7d7238373 EA 2013-04-18 2013-04-17 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-FU-A3HY-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 620ece8c058fcf4ca7c29782f17638b8.bam 6787756555 620ece8c058fcf4ca7c29782f17638b8 fe5577a8-07c5-4c2b-8b1e-e2e76995e3b6 d940ce39-b17e-4275-baf2-7e6253bb92db 674e010c-7ad4-4dc2-86b0-284cd4560633 cc602955-fcec-4357-8b7c-31111cde9a74 FU 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-EA-A3QE-10A-01D-A21Q-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 9d36fbe37f66c4a1d70c2bccbb5e4da7.bam 5725764333 9d36fbe37f66c4a1d70c2bccbb5e4da7 fe65cee0-520c-4a80-944d-41664c9cf1eb 3c8c024c-0290-44ab-8858-977dc83be80a a4e444b5-bbca-4ef0-b92f-908d608cbb91 1ab52cdc-8a5c-4f21-aec9-f4be1691c1ce EA 2012-11-10 2012-11-09 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV_IDT_probes capture chip set|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_probes_capture_chip_set/AC6217418DAB11E1BD99FC55D6BB89D5.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-Q1-A6DV-10A-01D-A32I-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build ea1a7c3daa0c90c45f6bff3a7a4a458a.bam 5044585295 ea1a7c3daa0c90c45f6bff3a7a4a458a fe8ae971-6f65-4d83-bd0a-db6ebd2b1e6b 6bb8b840-0027-4610-b4c8-2c79aeb77c26 c80f777e-d150-40f3-9fa9-02ef9a6d7692 08760962-2b08-404d-9670-e0b4c5ae9370 Q1 2014-04-22 2014-04-22 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A9UU-10B-01D-A42R-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA NB Blood Derived Normal DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 652cae00579a5e423ed28a481625458e.bam 8167636412 652cae00579a5e423ed28a481625458e fea898c6-267b-4562-a26d-c11fec4badad 54ea37e9-fbbf-4eba-ab5b-6686d03ce2b5 4770ec81-9174-4d2a-af54-70c00696fb0b b8e5bf3f-25ff-458d-b3ee-3ca250af047c VS 2014-11-27 2014-11-26 2016-01-04 Live 10 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed TCGA TCGA-VS-A954-01A-11D-A387-09 CESC CERVICAL SQUAMOUS CELL CARCINOMA AND ENDOCERVICAL ADENOCARCINOMA TP Primary solid Tumor DNA WXS WUGSC ILLUMINA Illumina GRCh37-lite-+-HPV_Redux-build 4162cc523ca207b8dea4500d8fa12085.bam 4334620988 4162cc523ca207b8dea4500d8fa12085 ffefedc0-126f-4f12-a5e1-58208a3d2a8e 67eb9e36-8aa7-4a10-a2ae-0a327b2961fc 9ba72a77-aef0-4788-8072-60c28902e55d 889e4fb2-6cda-4b02-99b8-e2ca03ff01da VS 2014-08-18 2014-08-15 2016-01-04 Live 01 D Illumina HiSeq 2000 bam IDT|Nimblegen HPV IDT all pooled probes|Nimblegen SeqCap EZ Human Exome Library v3.0 NA|06465692001 ftp://genome.wustl.edu/pub/custom_capture/HPV_IDT_all_pooled_probes/37b1fc41fd114b64b94336ff9b4d97ae.bed|http://www.nimblegen.com/downloads/annotation/ez_exome_v3/SeqCapEZ_Exome_v3.0_Design_Annotation_files.zip#SeqCap_EZ_Exome_v3_capture.bed