Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	51598	17097812	8841	-0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	17097954	17108285	5	1.363
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	17108439	72541086	34117	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	72541504	72583721	45	0.9307
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	72583736	75823432	1932	-0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	75827351	75827442	2	-2.8413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	75832097	94906917	12538	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	94907695	94907743	2	-1.4518
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	94907947	102603329	4987	0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	102603342	102603357	2	1.6226
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	102603424	103960907	621	-0.0086
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	103965022	104104926	28	0.5275
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	104105024	105814899	919	0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	105820728	105823613	14	0.8776
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	105823867	110025907	2658	0.0127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	110025950	110044476	32	-0.714
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	110046521	112491771	1955	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	112491849	112498913	26	-0.3797
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	112507479	143661332	5317	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	143669045	144000556	141	-0.2785
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	144001661	150822330	2578	0.0219
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	150822391	150852862	30	-1.4046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	150852902	195079130	29837	0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	195079153	195082414	2	-3.3066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	195083353	246885106	35804	0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	246891760	246891886	2	-2.3832
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	1	246892443	247191011	137	-0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	2784	4183562	2988	0.0124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	4191739	4201042	36	-2.0957
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	4201387	77827553	50526	0.0115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	77830206	77850174	46	0.5852
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	77850378	114078485	17169	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	114078884	114078886	2	-2.1712
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	114097291	126158693	7661	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	126168121	126168383	2	-2.4786
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	126168402	212889567	52502	0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	212894794	212900070	25	-0.8673
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	212900371	213855357	680	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	213856160	213862462	4	1.0708
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	2	213863572	242738129	18381	0.0054
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	35345	199602	157	0.0608
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	205022	207800	4	-1.4335
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	209877	6621543	5680	0.0298
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	6626128	6628114	19	-2.8817
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	6628148	6628332	4	-1.3512
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	6630078	131243814	76724	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	131245549	131281703	49	0.4057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	131282287	159832812	17675	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	159833578	159834239	2	-2.9266
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	159841566	162998291	1930	0.0084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	162998321	162998343	2	2.0651
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	162998638	164013564	691	0.013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	164015644	164023184	7	-1.631
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	164028410	167270238	1859	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	167272716	167273036	2	-1.8239
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	167274386	189077988	13544	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	189078072	189078407	2	2.1907
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	189078434	194090667	3633	0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	194090776	194091319	7	0.9445
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	194091799	196744450	1689	-0.0096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	196756684	196949795	47	-0.422
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	3	196949986	199380515	1179	-0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	2281	9073635	5249	-0.0173
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	9074070	9079832	2	2.09
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	9080356	9819488	551	-0.0491
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	9832514	9840596	28	-1.7724
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	9843312	9843364	2	2.3556
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	9843706	34455399	16985	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	34455420	34501120	41	-0.5261
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	34506267	69054598	19492	-9e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	69057536	69168574	65	-1.615
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	69171930	69475459	12	0.1014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	69477123	69512426	3	2.2034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	69571393	70165409	321	-0.042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	70165498	70266388	50	-0.5411
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	70266611	104435155	20668	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	104437549	104437551	3	1.7518
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	104439553	104965020	367	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	104971079	104971086	5	1.2517
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	104971093	112526500	4461	-0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	112526515	112526529	2	1.85
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	112526806	115394772	1847	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	115394793	115403715	25	0.874
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	115403759	118132096	1677	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	118132902	118141887	4	-1.6563
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	118144422	162099591	26351	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	162099647	162104358	18	-0.658
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	4	162104369	191261904	19208	0.0066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	5	68532	17568801	13406	-0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	5	17644656	17658332	14	-0.9879
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	5	17662218	46287063	17374	-0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	5	46306765	46309259	8	-1.4472
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	5	46313969	68882059	12411	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	5	68903050	69153891	5	-1.0968
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	5	69269183	178040428	68308	0.0021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	5	178042581	178045769	3	-2.5701
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	5	178051461	180722926	1552	-0.0176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	94661	29944218	21733	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	29944454	29944615	3	-2.1091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	29944682	29958359	23	0.317
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	29979615	30006876	12	-5.3395
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	30007656	32609277	1192	0.025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	32616454	32626747	5	-1.7182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	32635262	32798005	89	0.0753
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	32798775	32798808	3	2.281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	32798923	33816754	580	-0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	33817998	33818016	2	-2.066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	33821588	54039026	13111	-0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	54039043	54039814	8	1.5789
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	54043307	68177985	6376	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	68182427	68216548	20	-0.7637
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	68216637	71784285	2236	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	71785587	71795201	7	0.7533
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	71798004	77071668	3362	0.009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	77073620	77073646	3	2.528
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	77073713	77493251	295	0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	77496587	77509392	19	-0.4935
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	77509408	103841522	16571	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	103844669	103858257	20	-0.4334
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	103858570	103868754	26	-1.3435
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	103872163	148543637	28312	0.002
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	148548305	148548637	2	-1.833
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	148548948	162346451	9746	-0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	162348279	162350983	4	1.4441
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	6	162353907	170892930	6167	-0.0012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	52911	54347867	38567	0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	54353999	54354008	5	-1.813
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	54354011	62315457	2396	-0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	62316476	62460820	20	-0.6465
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	62467061	62746769	29	-0.0551
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	62746859	62749451	8	-0.8218
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	62749700	64206287	687	-0.0146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	64231500	64233133	6	1.077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	64274563	70058374	3152	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	70061186	70064077	2	-2.4954
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	70066179	109228448	22524	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	109228480	109241146	11	-1.9213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	109241218	125832210	10033	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	125832718	125834112	13	0.8434
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	125834113	141416149	9942	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	141416160	141438576	40	-0.5572
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	141441750	142154515	451	-0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	142156294	142159298	8	-3.5064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	142159383	142165614	19	-1.6348
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	142165684	152778571	6465	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	152778578	152778645	2	-2.5698
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	152778648	157810356	3473	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	157821349	157824926	2	2.1083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	7	157829747	158819765	639	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	8	21254	65011190	44613	-0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	8	65011451	65012064	7	1.4176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	8	65012277	115703883	30217	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	8	115704083	115710178	20	-0.5322
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	8	115710248	146268959	21084	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	36587	44344908	31451	0.0125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	44364447	44777523	38	-1.2892
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	44780914	69148819	334	-0.128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	69149853	69179312	4	1.2846
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	69183387	78744280	6375	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	78746701	78756684	5	-1.0147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	78756709	84567047	4052	-0.006
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	84567268	84568741	3	1.427
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	84569526	86457198	1429	0.0066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	86457519	86457613	2	1.291
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	86464568	89712414	2420	-0.0044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	89743971	89744039	2	-2.1592
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	89747777	92649398	2035	0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	92649489	92649953	3	1.5409
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	92652780	105606318	8581	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	105608517	105609111	2	-2.986
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	9	105610523	140211215	23160	-0.0057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	62759	27627537	21454	0.0501
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	27633433	27746607	90	-0.9595
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	27749417	46475660	10112	0.0346
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	46475717	46479812	22	0.7442
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	46479827	48522382	563	-0.0261
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	48548797	48702576	11	-0.8426
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	48882777	57257935	5722	0.0519
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	57258298	57260774	2	1.8038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	57263103	66976085	6756	0.0474
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	66976164	66981189	21	0.6526
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	66981202	81375381	9272	0.0411
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	81424899	81434084	4	1.681
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	81434093	89028321	5212	0.0323
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	89036478	89059776	2	2.873
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	89060725	124331524	23908	0.0433
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	124333941	124341003	7	-0.8982
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	124346802	132476545	6195	0.0399
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	132480811	132481781	3	-1.5471
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	10	132485961	135356694	1717	0.0267
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	188510	5743981	3303	-0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	5744656	5765715	32	-2.6922
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	5765914	18886391	9409	7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	18887904	18915466	46	0.3079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	18916600	25175687	4985	0.0077
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	25175721	25177588	2	2.0867
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	25180829	55132599	16886	0.0083
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	55132812	55198894	43	-0.7029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	55200787	91470137	21397	0.0075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	91470306	91470691	2	3.3117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	11	91472352	134449982	31042	0.0064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	20703	736231	416	0.031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	739370	744290	18	-3.0087
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	745615	2106150	831	0.0367
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	2116123	2128181	41	-0.7157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	2128284	11395209	6108	0.0266
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	11395242	11432296	32	0.5629
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	11434653	33829206	15880	0.0254
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	33829327	33832090	4	1.3508
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	33832202	89007481	32475	0.0198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	89015800	89015818	2	-2.7849
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	89015947	98319779	6458	0.0226
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	98319868	98322865	28	-0.39
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	98327224	125560180	17685	0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	125560866	125570543	8	-1.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	125573428	125691333	93	0.0833
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	125691697	125696445	2	2.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	125696993	130686668	4389	0.0358
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	130698537	130699288	13	-1.8134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	12	130708284	132288262	571	0.014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	17924949	31430121	9637	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	31430622	31435944	15	-0.8001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	31436094	36969135	3909	-0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	36970036	36982732	15	0.5187
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	36982757	45697170	6043	0.0035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	45700130	45700358	3	1.2675
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	45700658	50443055	3080	0.0177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	50444912	50447199	2	2.3924
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	50447558	50453863	4	0.7535
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	50460373	56661148	3415	0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	56661291	56676381	28	-0.6248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	56687715	61426622	2866	0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	61426790	61429266	2	-2.0337
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	61440911	71377548	6127	0.0165
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	71378450	71378606	3	1.4691
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	71384484	80901981	6615	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	80902437	80911852	9	-0.9661
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	80917472	80924347	6	-0.2407
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	80928806	80931606	5	-0.8754
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	13	80937788	114126499	22502	0.0025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	14	18072124	19489991	186	-0.2628
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	14	19490079	73070876	34128	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	14	73076460	73090732	8	-1.5661
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	14	73099653	105497323	20760	-8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	14	105497334	105499435	2	1.6469
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	14	105501013	105822329	141	-0.1825
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	14	105824904	105824912	3	1.7958
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	14	105825048	106356482	330	-0.1559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	18276341	18522250	53	-0.1035
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	18524300	20084266	365	0.388
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	20085795	22055250	943	0.0045
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	22059801	22063128	2	1.9444
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	22065713	28173703	3733	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	28185521	28517602	85	-0.3042
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	28517995	37835829	6483	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	37840922	37845384	2	-2.1871
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	37845785	45306411	3856	-0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	45306837	45306846	2	1.8938
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	45312953	74678296	18820	4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	74678566	74682399	14	0.7089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	15	74682822	100286563	17692	-2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	16	777	76929109	41854	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	16	76929941	76942239	16	-2.496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	16	76942266	88815036	10639	-0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	17	526	41569489	23540	-0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	17	41569943	41707478	82	0.3807
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	17	41707706	76243458	20707	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	17	76244388	76248774	2	2.2601
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	17	76248895	78643088	962	-0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	18	1543	76116029	50797	0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	19	41910	63789666	29357	-0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	20	9305	1500503	1185	-0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	20	1505190	1508999	21	-0.5862
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	20	1509580	1541893	41	0.5228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	20	1545946	16610218	11763	0.0086
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	20	16610745	16615772	13	-1.015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	20	16617877	35475614	10149	0.0028
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	20	35478797	35480210	2	-1.7388
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	20	35487907	62426597	19319	-0.0026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	21	9758742	46921385	24398	0.0087
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	14432528	22601745	4591	-0.0404
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	22613016	22660218	26	-0.5502
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	22660269	22661967	2	-3.645
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	22662625	22667949	4	-0.4379
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	22674422	22732442	23	0.4695
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	22732461	24129113	958	-0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	24129499	24136685	11	-0.582
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	24136813	32503406	6296	-0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	32504947	32504973	3	-2.4224
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	32504985	36072938	2783	-0.0064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	36078675	36079892	4	-1.4548
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	22	36080613	49581321	8857	-0.0064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	X	108477	47698609	29066	0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	X	47700742	47706228	6	-2.1934
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	X	47707093	50815398	1357	-0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	X	50817709	50818475	2	-2.8439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	X	50818502	58298903	3109	-0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	X	58299943	58304573	5	-3.5942
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	X	58305233	149195884	47896	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	X	149196694	149208148	10	-1.3395
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	X	149208243	154835548	3006	-0.0169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A09_801950	Y	2710438	57427647	8590	-0.9715
