Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	3218610	83592093	45691	0.0821
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	83592223	83596464	4	-0.8823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	83597010	99019584	9440	0.1418
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	99019885	99399687	209	-0.0971
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	99399760	99400685	3	-0.8628
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	99402224	102404191	2035	-0.0616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	102404247	102410701	13	-0.3182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	102411878	102416728	4	-0.8891
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	102416958	102862791	150	-0.3351
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	102862847	102881246	23	0.1023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	102890347	120527361	10167	-0.1688
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	149881398	160312625	5448	0.2791
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	160314757	163749521	2321	0.5974
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	163802976	166696783	2304	0.2505
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	166698993	167580349	663	0.5863
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	167583263	191225602	14670	0.3177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	191227816	198208922	3977	0.0268
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	198215042	206329939	5094	0.3484
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	206496641	207261196	494	-0.1327
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	207261887	207261914	2	-1.6738
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	207267951	208501958	865	-0.1129
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	208505735	216707012	5644	0.1246
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	216707040	216876515	149	0.4985
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	216876843	221846892	3355	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	221851423	230103460	4722	0.3544
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	230103883	230189564	68	0.7036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	1	230189875	247813706	11504	0.3586
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	484222	21825207	13711	0.0633
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	21825860	21840093	2	-1.889
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	21842667	77038457	30963	0.0596
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	77038541	77044081	4	-1.0161
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	77046324	188053293	55313	0.0432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	188071278	188073553	3	-1.2331
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	2	188074794	242476062	31173	0.0294
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	3	2212571	90485962	50875	-0.1217
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	3	93734671	165021836	38866	0.1891
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	3	165022274	165022914	2	-1.2591
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	3	165030679	197538677	16549	0.2624
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	4	1053934	41268465	24685	-0.1068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	4	41268479	41272293	2	-2.0395
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	4	41272335	188763651	77937	-0.1026
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	5	914233	176425359	98615	-0.0481
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	5	176427369	176434788	2	-1.8062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	5	176435925	180360469	1781	-0.0937
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	1014281	78438978	42823	-0.1285
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	78446901	78825728	229	-0.5954
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	78827563	101726763	12426	-0.1349
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	101727216	101975630	172	-0.4873
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	101976291	107064307	2934	-0.1397
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	107064626	107310106	173	0.2345
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	107310131	128450202	11914	-0.1377
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	128450848	128454069	2	-1.6183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	6	128454614	170903919	25700	-0.1439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	705284	15656533	7339	0.3677
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	15656707	15698178	35	0.1063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	15698460	72401628	30080	0.3971
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	72731953	73418574	233	0.0496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	73422420	91240470	8251	0.4234
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	91244582	92075871	417	1.0313
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	92080395	95512962	2180	0.4191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	95513334	96836179	812	1.2602
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	96836212	97888121	532	0.9509
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	97889684	99602191	720	1.3329
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	99605588	100109200	140	0.8915
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	100117280	100606796	129	0.0724
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	100606806	100717744	53	0.7169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	100719139	101141971	94	0.0496
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	101142190	101584934	207	0.5993
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	101589399	105204085	1812	0.1125
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	105204405	106619472	1020	0.6949
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	106622629	110180605	1970	0.1325
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	110180768	110195366	8	1.2177
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	110197412	110775098	303	0.8086
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	111353361	115564365	2090	0.1461
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	115570890	118196639	1555	0.8069
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	118197820	119220979	495	0.1578
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	119232922	119932431	312	0.9845
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	7	119944053	158385118	20489	0.1221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	617667	87789332	47328	-0.1436
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	87789357	87789626	2	-2.5947
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	87789846	99164675	6736	-0.1166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	99166896	99167323	2	-1.5961
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	8	99167336	145232496	27384	-0.1107
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	789932	80265085	29820	-0.2903
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	80265204	80266045	2	-1.4606
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	80266330	86603313	4292	-0.1115
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	86603526	86611036	5	-1.1011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	9	86611311	140938752	33822	-0.1357
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	10	415240	135225087	80753	-0.1457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	11	456120	134142530	77174	-0.1198
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	12	889902	97921084	54101	0.0917
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	12	97924112	97925117	2	-1.1988
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	12	97927063	133161346	19769	0.072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	19450806	76502553	32671	0.0559
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	76502586	76502805	2	-1.4515
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	76506779	77705316	829	0.0373
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	77708044	77713956	3	2.2977
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	13	77714441	114987458	23076	0.0299
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	14	20501368	105988038	49381	-0.1405
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	15	23687685	101884307	44475	-0.0379
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	16	653459	89379936	40786	0.1984
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	17	987221	25270800	9623	-0.4169
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	17	25271294	80917016	27331	0.0607
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	329586	19924190	8767	0.1365
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	19925721	28624817	5355	-0.2992
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	28626312	30977937	1515	0.1476
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	30980267	48401562	10847	-0.299
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	48402040	48562804	90	0.0681
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	48564578	50391542	1313	-0.2874
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	50404737	50474422	53	0.1021
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	50475085	51365810	516	-0.3
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	51370250	57263965	3708	0.078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	57266248	60201575	1864	-0.2997
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	18	60202408	77109240	8571	0.0703
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	19	284018	58878226	23944	0.1964
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	20	455764	62219837	37263	0.1851
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	21	15347621	33110437	11273	0.1009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	21	33114680	33115675	2	-1.0761
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	21	33118216	47678774	9291	-0.0398
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	22	17423930	36191371	9122	0.1174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	22	36194627	36194684	2	-0.9837
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	22	36202481	49331012	7795	0.1011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	3157107	12671162	3325	0.0282
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	12672533	28223641	7723	-0.2257
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	28223902	30873422	1466	0.0118
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	31186307	31438662	204	-0.2135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	31440636	119801730	35269	0.025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	119802147	119802621	2	-2.4413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_A12_801986	X	119806398	154905589	15660	0.0336
