Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	3218610	5879132	1775	0.0644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	5879772	6632047	336	0.4005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	6641758	22190933	8262	0.0645
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	22191031	22266930	52	0.6124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	22270703	31981400	4646	0.0523
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	31981543	32293076	158	0.3936
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	32296225	37976741	3023	0.0594
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	38001827	38506488	231	-0.4441
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	38515704	48344945	5317	0.0648
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	48348370	48364824	15	-1.0501
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	48367240	190595906	69028	0.0729
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	190597470	190604139	3	-1.401
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	190607833	230451412	24888	0.0291
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	230452323	230452452	2	1.0439
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	230453597	233959405	2534	0.01
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	233963170	233964018	2	1.4855
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	233966323	245418165	7744	0.0212
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	245418431	245514751	64	-0.584
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	1	245520118	247813706	949	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	484222	2751838	784	0.0301
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	2752403	3455218	384	-0.479
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	3455692	9807984	4424	0.0744
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	9808296	9815766	4	-0.8491
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	9816256	38729826	16929	0.0648
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	38734435	39104559	201	0.4201
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	39104702	77755115	22375	0.0601
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	77760395	78984033	588	-0.4031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	79697982	130240631	22178	0.0603
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	130255838	130273284	14	-0.5228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	130275182	156341633	13859	0.0717
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	156343799	156483063	101	-0.4062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	156483716	240774213	48447	0.079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	240774508	241544021	496	-0.2089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	2	241544086	242476062	407	0.0136
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	2212571	27697816	14826	-0.3974
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	27698432	27702261	4	-1.5556
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	27702284	55786540	16152	-0.4025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	55790029	55807255	17	-0.9355
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	55807329	69957800	8929	-0.4068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	69957857	114368954	22159	0.1389
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	114374935	114479374	68	0.5279
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	114484158	163069426	26705	0.0741
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	163073624	163172340	49	-0.3257
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	3	163174048	197538677	17346	0.1209
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	1053934	91494256	50111	0.036
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	91496700	91724197	153	-0.3466
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	91730325	92787940	559	0.1301
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	92793166	98732470	3167	-0.4073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	98733394	102451310	2098	0.1094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	102460173	102784711	196	0.4582
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	102787548	102797173	13	0.0782
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	102805791	103074421	113	0.4651
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	103074466	182303212	43225	0.1133
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	4	182307239	188763651	2999	-0.4244
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	5	914233	58866389	31502	0.0976
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	5	58869319	59451019	345	-0.4497
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	5	59453930	155770918	53542	0.0983
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	5	155772896	155777439	4	-1.123
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	5	155779906	157843442	1424	0.0663
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	5	157845723	167985720	6526	-0.4142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	5	167986775	180360469	7065	0.0706
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	1014281	17200681	11435	-0.4955
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	17202220	17238649	21	-0.2482
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	17238812	17312060	32	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	17312625	17691660	235	-0.2681
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	17699322	19470829	1257	-0.4809
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	19471680	26014026	4416	-0.0157
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	26014489	30475717	1540	-0.3132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	30477235	33931967	850	0.0288
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	33932093	36968082	1571	0.2434
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	36969384	44546720	4913	-0.0109
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	44551199	44645974	78	-0.2833
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	44647374	50289369	3190	-0.019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	50292245	50292339	2	-1.2231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	50292908	67940232	7310	-0.1413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	6	67945129	170903919	59492	-0.3932
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	705284	73648163	37773	0.1124
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	73649347	73730544	33	0.432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	73738067	80071943	2698	0.1132
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	80074216	86928582	3984	0.4773
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	86929327	88138349	616	0.1305
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	88141179	91897644	1158	0.4498
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	91898151	91950941	31	0.119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	91954717	93721352	1163	0.4613
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	93724795	94126217	254	0.1145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	94129353	115713642	10770	0.5082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	115714131	115718328	2	0.1261
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	115721633	116866442	822	0.8747
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	116867084	127148842	5565	0.4765
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	127158357	127551557	221	0.1001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	127553857	148709507	11444	0.4614
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	148819519	154552343	2483	-0.4515
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	154556618	154569357	11	0.6089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	154573847	155960147	1007	0.9359
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	155964606	158100057	1130	-0.4498
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	158156355	158161501	6	-1.407
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	7	158164002	158385118	95	-0.5
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	617667	20245414	10874	0.0845
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	20245957	20245989	2	-0.8034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	20248484	38527042	11305	0.0793
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	38529085	38530477	3	-0.8622
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	38533344	71414934	16174	0.1059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	71420040	101181328	16676	0.3193
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	101190671	101529950	213	0.7155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	101531905	129014533	16440	0.3452
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	129014697	129111865	100	0.6096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	129115396	145077787	9647	0.3322
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	8	145082325	145232496	50	0.7176
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	9	789932	37629496	22462	-0.373
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	9	37629981	37631583	4	-2.6256
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	9	37632408	82446548	8829	-0.4048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	9	82450362	82450834	2	-2.147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	9	82452426	129515924	31089	-0.414
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	9	129518047	132727413	1548	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	9	132727853	132734279	3	-1.5516
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	9	132735246	140938752	4006	-0.0146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	415240	21439233	15091	0.1009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	21445794	21544357	56	0.5058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	21548466	21567565	12	0.1556
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	21567724	21646961	45	0.4764
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	21649954	65550647	22418	0.1104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	65550686	65558761	4	-0.6192
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	65558896	69172903	1939	0.1264
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	69172951	69374809	103	-0.3472
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	69378057	73752297	2837	0.0774
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	73756202	74251138	233	0.4616
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	74253476	90229234	9933	0.1003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	90229536	90593692	218	0.4881
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	10	90597628	135225087	27910	0.1143
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	11	456120	4624174	1656	0.0308
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	11	4624432	4625020	3	-0.9258
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	11	4626090	95266482	49796	0.1003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	11	95267900	95269392	4	-0.8908
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	11	95271528	99225601	2497	0.1245
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	11	99231318	99293594	30	-0.3637
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	11	99295796	134142530	23212	0.1016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	889902	45292601	22858	0.1139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	45297471	46289086	553	-0.4012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	46301270	71730804	14844	0.1056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	71866185	72214146	210	0.4814
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	72224188	111102627	23764	0.1206
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	111108255	111149086	19	-0.58
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	111149788	115612701	2453	0.0758
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	115612981	115613808	2	-1.1224
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	115614698	118456090	2132	0.0854
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	12	118456285	133161346	7037	0.4527
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	13	19450806	31410078	7161	-0.3044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	13	31411297	31412128	3	-1.6472
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	13	31416899	102155537	41052	-0.3234
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	13	102156602	102811043	555	-0.9017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	13	102812297	107382635	3029	-0.2589
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	13	107384238	107384710	2	-1.7283
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	13	107385235	114987458	4746	-0.2809
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	14	20501368	44282245	12546	0.0593
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	14	44286541	44654087	100	-0.4009
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	14	44750150	52035018	3603	0.0547
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	14	52041074	52235411	153	-0.4753
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	14	52236142	105988038	32989	-0.034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	15	23687685	54841958	16511	-0.1402
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	15	54843022	54982471	94	-0.7226
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	15	54984088	66090021	7073	-0.1432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	15	66092581	83509059	9836	0.2277
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	15	83509173	83596074	57	-0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	15	83596227	101884307	10909	0.241
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	653459	77062262	32255	0.1113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	77062365	77815571	689	-0.4394
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	77819474	78180351	285	0.0909
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	78181986	78425224	246	-0.4732
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	78434693	78529918	133	0.1231
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	78530357	78539722	23	-0.6148
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	78541332	78546809	13	-1.6442
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	78547718	78666152	120	-0.4391
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	78668208	78749683	89	-1.3606
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	16	78930393	89379936	6928	0.1117
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	987221	11230219	5408	-0.3562
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	11230466	11234035	3	-1.6956
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	11234884	21305392	4217	-0.42
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	25270517	60681797	16984	0.2393
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	60683673	60844132	82	-0.0229
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	60844724	60883506	11	0.277
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	60884191	60889863	5	-0.1649
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	60890144	60943605	28	0.3485
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	60947260	60976040	15	-0.0976
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	17	60978943	80917016	10211	0.2717
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	329586	7473314	3665	-0.1846
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	7475949	9010110	1186	-0.8113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	9018463	14660482	3340	-0.1769
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	18689747	20052870	644	0.7271
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	20069699	21692161	913	-0.7845
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	21692286	21693892	4	-4.1966
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	21694002	49123194	17226	-0.7673
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	49128428	49156168	26	-0.0942
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	49164300	52855278	2209	-0.7524
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	18	52861375	77109240	13335	-0.1203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	19	284018	5659874	1382	-0.4683
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	19	5666182	5666921	3	-2.024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	19	5670558	7300055	635	-0.4607
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	19	7304492	7344986	6	0.4834
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	19	7397015	9977148	1193	-0.4419
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	19	9977344	11076005	444	-0.8482
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	19	11080491	24052992	5303	-0.4409
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	19	28240494	58878226	14965	0.0552
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	20	455764	4948081	2783	0.3756
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	20	4953582	5198509	133	0.6457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	20	5199567	15899400	6713	0.4049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	20	15899679	16237763	345	0.6687
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	20	16238294	62219837	27298	0.3796
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	15347621	15744142	220	-0.0974
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	15745390	15774771	16	0.3048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	15774900	15785466	11	0.6432
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	15786300	15885819	66	0.3993
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	15887528	15901589	13	0.0928
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	15904945	15964119	52	-0.5565
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	15965719	16402431	291	-0.0653
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	16412389	16575042	137	0.2877
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	16575200	16744774	133	-0.059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	16745778	17181102	179	0.3317
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	17190409	34192545	10824	-0.5757
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	34195002	34989627	526	0.2756
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	34992069	43775884	6337	-0.4487
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	43776682	43776814	2	-2.0762
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	43776839	45762716	963	-0.4659
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	45772388	46205684	201	0.3595
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	21	46215608	47678774	570	0.0276
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	22	17423930	22098687	757	0.4183
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	22	22100718	22292995	87	1.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	22	23816388	37908678	9211	0.4288
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	22	37910395	38164106	108	0.6659
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	22	38169851	38627346	185	0.3622
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	22	38627920	39901260	556	-6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	22	39904648	49331012	6008	-0.4659
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	3157107	31722800	12881	0.0146
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	31724832	31738234	14	-1.5454
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	31738471	46980470	6832	-0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	46984829	46987578	2	-2.0147
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	46987973	91525996	15372	0.0141
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	91539211	92178330	198	-0.9316
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	92182782	97100358	1827	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	97102624	97102651	2	-2.2933
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	97103074	125474027	13625	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	125474225	125474331	2	-2.1853
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_B11_801930	X	125475295	154905589	12809	-0.0056
