Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	51598	16884478	8776	0.0019
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	16884777	17134834	115	0.3776
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	17148828	72541504	34067	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	72541524	72583736	45	1.0587
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	72584492	95447298	14896	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	95449099	95449106	2	-1.6142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	95452712	104027091	5194	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	104041212	104061555	10	-0.576
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	104061762	105814899	923	-0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	105820728	105823898	17	0.6734
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	105825578	110034497	2670	0.0211
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	110034560	110041701	16	1.0714
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	110044476	146851961	8319	0.0159
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	146894193	146903393	4	-1.1923
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	146903515	150822151	1694	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	150822330	150853164	33	-1.9116
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	150853200	151028547	174	0.0333
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	151028563	151034983	34	-0.3864
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	151035194	155745162	2499	0.0087
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	155749078	155749571	2	-1.3979
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	155749897	167483561	8830	0.0104
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	167500598	167508390	7	0.9315
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	167509025	177590361	6615	0.0078
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	177597151	177599938	4	-0.926
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	177605829	183680725	4120	0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	183683293	183683335	2	-1.3502
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	183687347	195079130	7538	0.012
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	195079153	195082414	2	1.937
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	1	195083353	247191011	35937	0.0013
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	2784	4194295	2991	0.0256
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	4194327	4200414	29	-0.5741
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	4200524	34373977	20985	0.0108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	34377482	34379084	2	-1.9449
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	34379471	34552819	96	-0.0023
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	34554898	34555239	5	-3.4745
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	34562136	34571412	23	-1.6186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	34571478	34590561	17	-3.291
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	34590667	52607972	13043	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	52607984	52635046	39	-2.4572
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	52641453	89398864	22885	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	89401952	89758669	71	-0.7661
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	89758720	89820013	36	-0.4654
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	89820721	89904426	51	-0.9211
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	89906310	97389445	1038	-3e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	97391786	97545636	20	0.4808
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	97546012	123193484	15132	0.0101
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	123196369	123198711	9	-0.7309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	123200123	146582302	14398	0.0172
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	146582444	146583379	10	-0.6131
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	146583404	213077863	40189	0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	213078607	213078947	2	-3.1644
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	2	213081233	242738129	18940	0.0063
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	35345	5858026	5148	0.0418
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	5862648	5863521	2	-1.9128
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	5864010	37952421	22528	0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	37957112	37962146	20	-0.906
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	37962778	96938796	34257	0.0066
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	96949570	96950800	2	-2.6901
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	96951370	129881911	19998	0.0047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	129887861	129894468	6	1.1079
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	129895021	131246388	626	0.0134
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	131249276	131288926	51	0.3943
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	131289614	163995433	20284	0.0102
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	163995786	164098609	62	-1.7442
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	164106536	164108689	6	-0.786
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	164109266	173757210	5737	0.0044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	173757259	173758590	3	-1.2722
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	173759448	191606647	11517	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	191606916	191607960	2	-1.754
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	191609554	194360656	1928	0.0098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	194360739	194363167	6	1.1015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	194363281	196875861	1500	0.0016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	196884256	196941179	27	-0.686
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	3	196941532	199380515	1192	0.0018
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	2281	7492962	4327	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	7493026	7496880	3	-1.1152
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	7497307	9468995	1092	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	9468999	9473325	3	-1.381
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	9474140	9819488	379	0.0205
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	9832514	9847534	37	0.5355
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	9848059	9999813	169	0.0112
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	10001452	10011816	17	-0.6413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	10011844	34463350	16792	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	34463385	34506267	37	0.5186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	34506308	44651172	6587	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	44654523	44655346	3	-1.7637
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	44655556	47899056	1950	-0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	47899393	47899405	2	-2.1825
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	47900699	64375574	8036	0.0055
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	64376535	64390853	30	-0.3723
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	64399026	69021159	2872	0.007
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	69027207	69219747	75	-0.2891
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	69222620	88887969	11786	0.0093
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	88888131	88891764	22	-0.8627
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	88893813	115393149	15923	2e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	115394772	115401624	23	0.7907
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	115403678	140448457	14793	0.0029
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	140451996	140453810	3	-1.5075
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	140454523	172605921	19921	0.0056
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	172611459	172614019	8	2.203
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	172614033	173224503	401	0.0114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	173225723	173226108	12	0.8498
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	173232554	173659097	232	0.0421
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	173661522	173665218	7	-0.7779
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	173677707	189458252	10696	0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	189458354	189458418	3	-2.4738
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	4	189458433	191261904	1177	0.0359
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	68532	738748	308	0.0522
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	751371	859336	41	0.668
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	862047	12853889	9866	0.0081
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	12868780	12879650	11	-1.6778
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	12886857	15771492	1976	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	15772222	15773597	11	-0.8565
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	15776346	21485033	3552	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	21486957	21488195	5	-2.387
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	21488253	25857442	2548	-0.0014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	25857639	25857784	2	-4.7057
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	25860245	46306865	12476	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	46307687	46309259	6	-2.8961
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	46313969	57357403	5078	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	57361784	57369272	31	1.8861
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	57369290	155409350	60322	0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	155409498	155415307	13	-0.6897
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	155427828	157856884	1684	0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	157857885	157882131	24	-0.9122
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	157884155	180292995	14922	6e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	180293075	180375006	30	0.4414
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	5	180375047	180722926	168	0.0233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	94661	199283	101	-0.0027
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	202353	323703	98	-0.3215
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	324015	9166868	7210	0.0094
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	9189309	9320213	7	-0.9543
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	9365143	26846882	12864	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	26846987	26862372	9	-0.9919
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	26863894	29945051	1447	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	29945166	29957246	16	-1.1138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	29958175	31388802	672	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	31394255	31404430	11	-1.4468
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	31417903	32560907	508	0.0596
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	32562253	32710085	53	-0.47
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	32710247	32734596	12	0.7447
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	32758590	45029298	7802	0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	45032372	45034549	8	-1.0787
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	45036806	54039234	5932	0.0033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	54039339	54039762	3	-1.3897
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	54039814	67065744	5464	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	67065775	67105350	54	-0.7602
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	67106127	73275412	4152	8e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	73278562	73278784	2	-1.2533
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	73284516	74648586	849	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	74648953	74660283	11	-0.5856
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	74660333	77486414	1763	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	77486449	77509360	21	-0.4477
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	77509392	103841522	16572	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	103844669	103868754	46	0.6976
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	103872163	134307961	19081	0.0024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	134310764	134311325	2	-2.1875
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	134313765	146332480	7729	0.0037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	146338619	146357382	6	-1.0528
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	146358041	156792091	7466	-5e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	156795841	156796277	2	1.4404
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	156796298	160952555	2673	0.0072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	160952709	160953273	5	1.1676
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	160988032	165218405	3318	0.0144
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	165218806	165229446	3	-1.6676
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	6	165229518	170892930	3942	0.0162
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	7	52911	6930184	3483	-0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	7	6930549	6932420	3	-1.2794
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	7	6934712	22401305	12609	0.0195
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	7	22401997	22403012	2	-2.8853
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	7	22405279	125832792	61334	0.0053
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	7	125832887	125833851	10	1.7251
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	7	125834112	158819765	21045	0.006
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	21254	583041	327	0.0495
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	584944	591043	11	-0.6098
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	596117	3527873	2726	0.0245
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	3528545	3528628	2	-2.1886
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	3530369	5581675	3029	0.0317
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	5586134	5594622	30	-0.7478
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	5594648	6814609	1607	0.0241
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	6820778	6825343	2	1.4775
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	6827115	8423207	628	-0.031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	8423560	8423852	4	-2.3196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	8425717	11986960	2928	0.0247
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	12025135	12038532	6	-2.1831
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	12071716	12278771	19	0.0648
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	12284206	12291857	30	0.5365
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	8	12305298	146268959	84580	0.0039
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	36587	5292538	5426	0.0267
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	5292551	5292634	2	-1.4649
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	5292749	10393105	4542	0.0309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	10394138	10394986	2	1.326
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	10397943	43117309	21381	0.0119
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	43117841	44054868	48	-0.4707
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	44076786	44181813	27	0.1614
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	44183430	44777523	55	0.4896
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	44780914	139375463	47989	0.0043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	139375539	139375654	2	-1.9456
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	9	139392824	140211215	413	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	62759	17934982	14880	0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	17967560	17989863	3	-2.174
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	18011822	31286516	9411	-0.0046
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	31291340	31291744	10	-0.7276
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	31291785	46376778	7286	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	46377091	47016329	165	0.3038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	47017702	47417400	186	-0.0362
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	47432905	47433407	2	-2.0761
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	47468066	56850159	5714	0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	56850247	56850323	3	-1.677
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	56850327	61028273	3035	0.0113
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	61034121	61035488	9	-0.7711
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	61035809	66977942	4030	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	66977957	66992801	27	-0.5756
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	10	66992932	135356694	46303	0.0044
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	188510	4924226	2477	0.0051
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	4924693	4932848	31	-1.6309
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	4932910	5743981	795	0.0225
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	5744656	5765624	31	-0.734
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	5765715	101099594	60026	0.0096
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	101103070	101103174	4	1.0363
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	101103422	106735929	3808	0.0095
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	106743866	106744338	7	-1.9561
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	106757572	106954232	168	0.0049
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	106958841	106959291	2	-1.5549
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	106959737	117475293	7141	0.0017
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	117475634	117476073	2	-1.3547
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	117477753	117854843	294	0.0225
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	117855215	117855332	6	-0.8562
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	11	117856311	134449982	12335	0.0067
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	20703	736231	416	0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	739370	745615	19	-0.9025
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	746507	8333552	5141	0.001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	8340379	8340484	2	1.6158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	8344733	9525137	626	-0.0234
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	9529176	9606832	22	-1.6926
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	9619559	31156324	15244	0.0108
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	31160565	31301146	93	0.5114
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	31301551	44190705	6953	0.016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	44192107	44195804	3	-1.6699
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	44199559	118468208	47436	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	118473270	118475116	14	-2.748
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	118475131	127794839	5987	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	127796466	127798250	6	-6.9188
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	12	127798498	132288262	3084	0.0213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	17924949	22527187	2894	0.0194
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	22527210	22531515	13	-2.1037
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	22536195	36969135	10652	0.008
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	36970036	36982757	16	0.5151
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	36986330	37950811	701	0.0082
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	37955572	37956056	2	-1.8379
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	37963057	63122206	15672	0.0135
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	63122793	63134693	9	-0.6973
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	63137564	71374989	5183	0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	71375556	71378557	4	1.5595
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	13	71378606	114126499	29136	0.0032
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	18072124	40678108	13831	0.0184
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	40680246	40707565	12	-0.5358
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	40723727	105609107	41286	0.0068
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	105612798	105638145	13	0.9417
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	105640508	105788401	67	0.097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	105791639	105854089	35	-0.2264
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	105867070	105873098	7	-1.6175
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	105886988	105945406	33	0.1512
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	105950876	105989139	50	-2.1347
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	14	105989153	106356482	225	0.0325
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	15	18276341	18507169	52	0.0301
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	15	18522250	18841578	53	-0.6074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	15	18846002	18850174	15	-1.6233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	15	18850404	20224763	302	-0.7033
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	15	20232440	22122442	967	0.0201
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	15	22125850	22338771	104	0.5604
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	15	22339434	28173703	3600	0.0139
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	15	28185521	28609050	108	-0.347
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	15	28675248	100286563	46836	0.0089
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	777	19851864	13531	0.0059
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	19853151	19874863	29	-0.7064
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	19877755	29561253	5661	0.0097
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	29562103	29563594	2	-1.7494
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	29563610	32160749	888	-0.0158
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	32187735	32785836	110	-0.2842
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	32806748	32857754	12	0.3993
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	32858803	33742820	131	-0.395
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	33744302	54352715	6959	0.003
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	54353890	54374147	18	-2.687
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	54374206	54399883	8	-0.3704
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	54399957	54416294	12	0.8457
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	54425940	76929109	14492	0.004
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	76929941	76940641	15	-2.6458
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	16	76942239	88815036	10640	0.0145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	17	526	1686538	821	-0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	17	1686602	1723841	15	-0.5959
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	17	1724177	19438482	11010	0.0088
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	17	19440328	19465343	27	-0.7812
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	17	19475598	41513416	11623	0.0144
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	17	41517686	41750189	132	0.3191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	17	41750195	42107479	46	-0.6016
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	17	42120174	78643088	21611	0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	18	1543	1713388	1175	0.0221
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	18	1715758	1828112	91	-0.8735
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	18	1831469	49461207	30498	0.0052
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	18	49461551	49464638	4	-1.5949
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	18	49466146	76116029	19033	0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	19	41910	9134800	3410	-0.0106
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	19	9135672	9138476	4	-2.9145
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	19	9139121	50440084	18554	0.0022
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	19	50440194	50441095	2	-2.0685
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	19	50448216	58104943	3871	-0.0015
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	19	58107981	58115832	2	-1.4918
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	19	58122979	59410780	874	0.0211
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	19	59410817	59433131	19	0.6233
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	19	59445152	63789666	2615	0.0103
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	20	9305	1508922	1205	0.0166
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	20	1508951	1547002	47	0.318
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	20	1547061	60787678	40574	0.011
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	20	60788088	60792299	2	-1.7618
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	20	60792463	62426597	655	0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	21	9758742	46921385	24398	0.0073
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	22	14432528	19305987	2334	0.0034
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	22	19307077	19307272	2	-2.1681
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	22	19308391	49581321	21224	0.0105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	108477	9851816	5575	-0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	9855993	9877545	32	1.0558
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	9877687	58243641	27889	0.0041
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	58243993	58252541	3	-2.2481
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	58253990	62359997	236	-0.0048
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	62360187	62422551	23	0.7448
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	62422593	69412222	3295	-7e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	69413355	69415404	3	-3.4776
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	69415421	143433744	40441	0.0074
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	143439174	143445365	4	-2.4574
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	X	143445803	154835548	6912	-4e-04
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C02_802006	Y	2710438	57427647	8589	-1.0407
