Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	1	3208470	245880329	128977	-0.0186
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	474222	33989612	20239	-0.0204
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	33989755	33990227	3	-1.7105
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	33990746	46219424	7055	-0.0171
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	46219590	46221800	2	-1.6805
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	46221823	57177481	5974	-0.0339
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	57178181	57186177	2	-1.8043
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	57187581	120038908	29474	-0.0235
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	120040436	120043824	2	-1.6058
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	120044269	122195093	1139	-0.0213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	122195609	122196079	4	-1.5489
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	122198612	129258012	3441	-0.0398
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	129259098	129290144	31	0.4001
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	129291252	225895052	54343	-0.0283
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	225897438	225904367	12	-0.783
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	2	225907802	242124735	9483	-0.0138
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	526235	17424255	9348	-0.0281
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	17424288	17433382	4	-1.4127
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	17433585	60623172	24034	-0.0282
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	61001391	61281000	251	0.4047
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	61281015	157032547	51441	-0.0329
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	157032550	157046491	5	-1.2072
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	157046850	164289854	3718	-0.0408
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	164290050	164293420	2	-2.0126
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	164296191	170273774	2663	-0.0248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	170279757	170777216	375	-0.8282
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	3	170780992	199023074	14472	-0.0207
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	4	1043934	91269203	49891	-0.0316
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	4	91269707	91397287	87	0.4453
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	4	91412717	115669668	13501	-0.0328
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	4	115673246	115673571	2	-1.87
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	4	115674494	135999670	10439	-0.0386
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	4	135999835	135999937	3	-1.6825
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	4	136004799	189836143	28728	-0.0324
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	5	967233	73445948	38775	-0.0293
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	5	73450567	73450840	2	-2.2265
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	5	73451289	74955165	850	0.0062
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	5	74956265	74960198	2	-1.584
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	5	74960646	166058338	52371	-0.0365
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	5	166059496	166059526	2	1.4449
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	5	166061805	180293075	8424	-0.0297
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	6	959281	159838684	90745	-0.0308
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	6	159845349	159856695	11	-0.9336
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	6	159862741	159867472	3	0.5415
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	6	159867607	159882793	21	-0.8777
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	6	159883700	170745844	5616	-0.0347
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	7	671810	1269587	100	0.4823
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	7	1277763	1326769	16	-0.9939
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	7	1342418	158077879	81154	0.4263
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	8	607667	43052529	24641	-0.8199
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	8	47580110	52627266	2442	0.3939
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	8	52628331	52628908	3	-1.8895
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	8	52629266	55810466	1852	0.4123
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	8	55817265	55817442	2	-2.0248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	8	55819136	88585299	18674	0.413
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	8	88593857	88595345	2	-2.8765
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	8	88598384	145304484	33750	0.4196
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	9	779932	10513295	5752	-0.0324
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	9	10513383	10514041	3	-1.6437
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	9	10514292	18357074	4984	-0.0154
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	9	18361916	18362565	2	-1.7424
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	9	18364849	27945871	6512	-0.0344
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	9	27947184	27949885	2	-1.7014
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	9	27950365	37023159	4906	-0.0248
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	9	37023361	37024617	2	-2.3329
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	9	37024669	140058573	45812	-0.0182
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	10	405240	135075077	80816	-0.0216
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	11	446120	103822871	57335	-0.0201
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	11	103826844	103847648	15	-0.6722
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	11	103851984	126640383	15237	-0.0213
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	11	126651298	126738098	90	-0.7696
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	11	126745350	129912730	2225	-0.0038
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	11	129915624	130482617	303	-0.8272
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	11	130492745	133647740	2004	-0.0327
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	12	760163	29199288	16846	-0.0191
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	12	29201428	29201569	2	-2.4317
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	12	29212030	79350221	26787	-0.0368
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	12	79351726	79352244	2	-6.9771
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	12	79352849	87951058	4825	-0.0511
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	12	87954176	87957724	3	-2.0521
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	12	87959308	129837371	24651	-0.0374
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	12	129838181	129838203	2	-2.3373
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	12	129842984	131671419	726	-0.0578
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	13	18348806	75419635	32698	-0.024
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	13	75419825	75419955	2	-1.7748
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	13	75421210	89942683	8448	-0.0431
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	13	89949096	89949565	3	-1.3283
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	13	89950046	92373721	1532	-0.0548
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	13	92375638	92380566	4	-1.4084
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	13	92381228	114005560	13910	-0.0321
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	14	19571208	71118913	28531	-0.0189
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	14	71121517	71122621	2	-1.8827
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	14	71122850	74202018	1921	-0.0251
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	14	74204914	74209374	2	-1.6337
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	14	74214633	96757991	14552	-0.0163
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	14	96762321	96763675	2	-1.6528
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	14	96768117	105059083	4394	-0.0149
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	15	21238778	46027599	12309	-0.0106
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	15	46028314	46028485	2	-1.7714
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	15	46031438	88435351	25315	-0.0065
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	15	88437198	88505493	41	0.4445
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	15	88507724	99701830	6831	-0.02
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	16	593460	77755459	34203	-0.0267
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	16	77756611	77788758	48	0.4224
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	16	77789947	87907437	6592	-0.0087
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	17	933971	35099911	15205	-0.0071
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	17	35102059	35102071	2	-2.1594
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	17	35107023	78510305	21763	-0.005
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	18	319586	75210228	42621	-0.0228
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	19	235018	33651339	9548	-0.0137
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	19	33652134	33652737	2	-1.5746
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	19	33655987	63570038	14399	-0.0142
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	20	403764	61690281	37267	-0.0091
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	21	14269492	46503202	20567	-0.0155
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	22	15803930	47717016	16921	-0.0031
SALLY_p_TCGA_129_134_148_149_N_GenomeWideSNP_6_C06_802068	X	3167107	154558783	63625	0.0103
