Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	61735	82315	10	-0.2352
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	82650	86341	5	-1.3597
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	98588	12845863	6501	-0.0017
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	12852748	13384264	58	-0.3603
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	13384383	16149915	1825	0.0015
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	16153497	16154966	9	0.6925
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	16155010	25583341	5724	0.001
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	25593128	25662212	31	-1.1858
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	25663310	35091674	4961	0.0053
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	35102654	35104491	20	-0.5101
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	35114268	70997442	22645	0.0033
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	70997639	70997811	2	-1.6067
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	70997913	72750353	1125	0.0045
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	72756113	72763370	9	-1.2024
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	72768418	72768916	3	0.2845
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	72768936	72811133	44	0.7652
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	72811148	106013376	20931	-0.003
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	106019205	106022375	17	0.7077
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	106024055	110227515	2653	-0.0049
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	110232974	110240178	17	-0.6346
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	110242953	152555706	9986	9e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	152555767	152586540	32	-1.5773
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	152586576	152759678	172	-0.0066
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	152761923	152768700	37	-1.4285
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	152773905	174796405	14817	0.0014
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	174796556	174801840	16	-0.7865
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	174801854	178661596	2512	0.0081
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	178661865	178662498	4	-1.3157
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	178662588	223020504	29860	0.0019
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	223022923	223023769	3	-1.8051
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	1	223026717	249224388	18110	7e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	12784	4205687	2984	0.0039
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	4213864	4223167	36	-0.6569
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	4223512	34701394	21010	-1e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	34701583	34737556	45	-0.4863
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	34738032	37342688	1998	0.0021
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	37348087	37353011	2	1.4619
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	37353124	52754865	10996	3e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	52754881	52781542	34	-0.4183
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	52787949	57002137	3085	-0.0017
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	57008881	57011803	3	-1.4148
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	57012297	87344738	18851	-6e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	87361172	88181244	197	0.3663
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	88191907	89565217	646	0.0015
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	89568468	90019985	28	0.3612
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	90023393	129638502	20186	-0.002
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	129638774	129640315	13	-0.8172
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	129640329	137982148	4989	-1e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	137983647	137984261	5	-1.0953
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	137985285	146862085	5446	-9e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	146864404	146866934	24	-1.3746
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	2	146877806	243089456	58923	-0.003
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	60345	45543225	32253	0.0028
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	45545624	45549494	5	-1.0301
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	45555365	65188453	12953	0
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	65189235	65216743	59	-0.4873
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	65216762	68721327	2406	0.0056
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	68722043	68747413	20	-0.61
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	68748758	85452964	10361	0.0033
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	85457798	85508911	39	-1.1084
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	85520915	98937784	5500	0.0076
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	98944458	98949314	37	-0.6796
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	98949421	141069782	25753	0.0016
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	141070205	141078399	6	-1.0194
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	141079280	141846834	420	0.016
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	141850539	141854214	5	-0.8795
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	141858313	165617478	14562	0.0037
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	165617929	165618032	2	-1.4847
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	165626201	192880587	17402	0.0022
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	192880726	192882903	11	-1.0065
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	192886435	195412212	1491	0.0085
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	195418263	195474763	41	-0.4525
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	3	195478694	197896118	1169	-0.012
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	12281	10210390	5792	0.0055
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	10223416	10235007	32	-1.3877
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	10235166	34778975	16933	-1e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	34779004	34824725	42	-0.6883
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	34829872	69260551	19391	0.0031
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	69261064	69372003	22	-0.5791
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	69374941	69528959	69	0.5674
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	69536788	122273643	31977	0.0024
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	122274144	122284169	27	-0.7614
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	122284555	130062751	4348	0.0013
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	130067546	130068160	2	-2.3077
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	130072563	161880141	19237	8e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	161880197	161884958	20	-0.4798
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	161884967	172376974	6654	0.0019
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	172377257	172377444	4	1.7508
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	4	172377458	191027923	12477	-9e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	15532	685504	306	0.0299
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	685748	779860	31	0.4888
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	779881	809806	13	-0.0906
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	817850	825653	14	-0.7951
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	833628	46271108	30324	0.005
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	46271930	46273502	6	-2.2192
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	46278212	59722882	6798	-0.0038
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	59723085	59772497	30	0.6668
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	59773479	68846303	5525	0.0073
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	68867294	69118135	5	-0.9857
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	69233427	70739425	61	0.0397
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	70739440	70739975	2	-0.9481
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	70749745	72041331	806	0.0023
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	72041411	72045250	2	-1.5342
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	72045632	94206202	12936	0.0046
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	94206714	94207052	2	-2.6019
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	94209508	103851221	5661	9e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	103860373	103860604	4	1.2473
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	103861049	155476920	33335	1e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	155476998	155482729	12	-0.5532
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	5	155495250	180790320	16772	0.0012
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	149661	294837	124	-0.0096
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	302306	385056	84	0.3086
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	385687	29836475	21475	0.0038
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	29836577	29918436	54	0.3686
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	29918453	32685550	1258	0.0077
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	32685865	32690830	13	0.691
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	32692227	33937999	760	-0.0047
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	33938743	33942705	7	-2.4471
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	33944586	40364325	4151	0.0013
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	40365601	40369293	6	-1.1856
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	40370499	53931067	8737	0.0052
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	53931084	53931855	8	-0.7147
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	53935348	67008262	5438	0.0117
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	67008286	67048629	56	-0.7393
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	67049406	74591801	4979	0.006
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	74591858	74601410	11	0.5771
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	74603555	77014948	1464	0.0023
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	77016900	77016926	3	-1.1588
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	77016993	78962050	1281	8e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	78962064	79032592	117	0.288
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	6	79034940	171051005	59527	0.0043
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	43355	57534527	40352	0.0028
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	57536111	57536638	3	-1.6107
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	57536709	87665239	13936	-0.0039
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	87670741	87672392	17	-0.872
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	87672946	97395460	6212	-0.0018
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	97395462	97402475	15	-1.5257
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	97404240	102346315	2073	0.0048
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	102347044	102373011	18	-0.4789
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	102375279	109433777	4515	-8e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	109433785	109437774	18	-0.5339
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	109440917	109441244	9	-0.0994
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	109441629	109453910	10	-1.8945
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	109453982	126044974	9999	0.0044
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	126045482	126046876	13	-0.6743
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	126046877	133785211	4701	0.0086
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	133785309	133790443	22	0.4703
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	133795634	143709699	6401	0.0078
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	143710096	143711151	7	-0.8772
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	143711169	154389895	6609	0.0082
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	154393171	154399613	4	-1.5463
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	7	154400830	159127004	3233	0.0076
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	31254	595875	335	0.0086
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	595892	595908	2	3.3442
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	601043	2080528	1149	0.0044
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	2081212	2081353	3	-1.095
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	2081372	2701934	626	0.0033
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	2703533	2703899	7	-0.9594
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	2707171	7029990	5669	0.0108
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	7033795	7799390	185	0.2408
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	7809891	12216009	3298	0.0051
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	12216848	12419427	91	0.2704
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	12419667	24974577	10399	-0.0063
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	24975500	24984223	21	-2.2562
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	24984250	39230325	8987	1e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	39230659	39386965	59	0.5541
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	39388299	112295038	41913	-0.0046
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	112295081	112295245	3	-1.8357
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	112295260	115634554	1826	0.0075
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	115634653	115662781	38	-0.4978
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	8	115665386	146298155	21004	0.0025
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	9	46587	22492889	19786	0.0021
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	9	22501913	22502699	2	-3.1152
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	9	22509340	141091394	59875	0.0015
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	72759	31246510	24181	0.0027
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	31251334	31251885	13	-0.7535
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	31252409	46070052	7179	-0.0015
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	46072872	46088061	13	-0.5941
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	46088963	46312487	46	-0.0911
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	46485761	46511281	4	1.1105
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	46527677	47771030	372	-0.046
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	47897394	47913401	3	-1.9655
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	47948060	67306276	12751	-0.0023
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	67307923	67314430	27	0.5865
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	10	67314446	135506704	46193	0.0038
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	11	198510	5788092	3297	-0.0089
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	11	5789601	5809139	30	-0.6368
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	11	5809338	55363340	31197	0.005
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	11	55374032	55431064	43	0.4706
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	11	55435127	99515057	26867	0.0021
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	11	99519830	99564935	42	-0.9394
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	11	99565102	134944770	25365	0.004
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	12	150442	9630556	6196	-0.002
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	12	9633870	9728292	25	0.9286
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	12	9734969	11219423	1038	-5e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	12	11220724	11241532	12	0.6053
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	12	11251874	16419405	3686	0.0016
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	12	16420987	16421325	2	-1.9659
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	12	16428557	33294660	11828	-0.0014
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	12	33301406	33308360	28	-0.6401
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	12	33308387	133778189	61972	0.0022
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	13	19026949	57758389	26008	-0.0012
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	13	57758626	57789714	31	-0.7091
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	13	57790009	58584790	415	-0.0171
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	13	58590281	58593272	4	-1.2969
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	13	58593346	115108397	37555	-6e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	19002124	19706758	52	-0.0631
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	19731410	20422583	137	0.5112
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	20423372	54618394	21527	0.005
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	54620648	54634340	9	-0.7685
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	54634835	73995774	12472	0.0014
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	74001123	74029900	10	0.966
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	74029915	106796025	20874	0.0027
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	106796228	106815943	7	0.813
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	106818557	106874361	32	-0.0699
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	106879831	106943834	61	-0.557
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	14	106948568	107285437	214	0.0457
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	20016328	20522339	78	0.0621
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	20532617	20541980	2	-1.4562
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	20549878	22587474	340	0.0289
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	22673399	22681250	3	-1.1576
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	22751094	24669745	1000	0.0059
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	24674751	24718173	39	0.3067
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	24718596	30501853	3641	0.0076
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	30501872	30821758	97	-0.3326
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	30887956	32512220	1070	-8e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	32531316	32789718	34	-0.3058
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	32796335	83043161	31615	0.0036
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	83046078	83108839	7	-1.1667
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	83169549	97817858	10541	0.0054
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	97817899	97832187	9	-1.0587
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	15	97833649	102469040	3424	0.0082
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	60777	2705982	895	0.0113
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	2706795	2716937	10	0.5948
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	2721963	12706474	8606	0.0033
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	12706487	12706502	3	-2.0834
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	12706513	19945650	3987	-6e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	19945808	19967362	28	-0.603
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	19970254	22558311	1292	0.0103
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	22558997	22698858	63	-0.3422
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	22701182	30646695	4594	0.005
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	30647273	30668512	4	-1.259
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	30668790	53458017	5771	0.0022
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	53469387	53469807	3	-1.4254
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	53469929	55796510	2019	0.0059
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	55796575	55822397	19	-0.7378
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	55822444	56760439	590	0.0101
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	56760973	56765784	6	-0.8808
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	56766831	78372440	13778	-0.0044
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	78372611	78385437	18	0.61
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	16	78385482	90287535	10611	0.0019
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	526	14301151	9039	0.0022
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	14302016	14302821	2	-1.6021
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	14303548	34437128	9310	0.012
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	34439978	34485091	36	0.4094
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	34528125	37977541	1751	0.0023
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	37980788	37987272	5	-0.9054
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	37989049	39421708	779	0.0129
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	39423014	39432724	25	-0.3987
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	39432840	40054319	421	0.0135
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	40055679	40057683	2	-1.2465
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	40057974	44148689	2071	-0.0012
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	44148743	44689681	172	-0.3341
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	44691415	54159044	5814	0.0027
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	54160914	54172591	26	-0.7073
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	54172823	56212100	1525	0.0146
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	56212514	56214094	4	-5.2295
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	17	56217398	81049726	14213	0.0023
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	18	11543	78015057	50602	0.0016
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	90910	41360172	19619	-0.002
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	41360370	41380946	28	-0.5539
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	41392155	49066659	3827	-0.0032
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	49075259	49075459	3	1.0593
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	49075915	53736087	2555	0.0084
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	53738985	53739495	2	-1.5387
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	53739898	56273057	1422	3e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	56278050	56283067	6	-0.8644
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	56286293	58027503	1252	0.0082
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	58027752	58035229	3	-1.0643
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	19	58038110	59097854	590	-0.0087
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	20	61305	139419	63	0.0622
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	20	139576	139745	2	-1.8589
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	20	139801	1552457	1115	0.0209
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	20	1552503	1560999	22	-0.6326
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	20	1561580	1593893	41	1.3096
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	20	1597946	62552346	40951	0.0034
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	20	62558549	62559639	2	-1.6723
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	20	62563788	62956153	184	0.042
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	21	10736871	14947676	329	-0.0211
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	21	14948315	14967881	8	-0.7474
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	21	14967979	48096957	23985	0.0034
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	16052528	20950564	2303	-0.0087
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	20952909	20953319	2	-2.967
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	20956163	24271745	2277	0.0229
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	24283016	24337949	32	-0.4446
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	24344422	24396814	20	0.692
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	24401529	25663985	823	-0.0016
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	25664249	25664801	2	-1.7249
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	25664832	39363619	10029	0.0029
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	39363684	39375307	23	-0.4743
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	39389628	49506757	7013	0.0029
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	49511361	49511483	2	-1.3597
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	49512164	49839621	338	0.0715
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	49847910	49907825	35	-0.7303
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	22	49908818	51234455	624	-4e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	168477	38835408	24163	1e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	38835451	38835985	2	-1.7039
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	38836601	47971064	4922	0.0069
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	47975851	47979657	4	-1.1504
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	47980874	76353650	10894	0.0035
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	76362292	76378656	2	1.5573
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	76378658	86649982	5430	6e-04
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	86656667	86657496	2	-1.4048
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	86658693	89895299	1659	-0.002
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	89903298	89903345	3	-1.1447
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	89903498	89962006	21	0.0169
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	89963437	89969559	3	-1.6329
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	89975762	100322179	5579	-0.0032
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	100322746	100324300	3	-1.185
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	100326768	121061279	11406	0.0047
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	121061538	121065156	3	-1.4486
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	121070058	121349797	151	0.0227
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	121351319	121351606	2	-1.6017
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	121354296	150779686	17847	0.006
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	150783728	150791294	3	-1.5158
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	X	150791868	155182354	2108	0.0256
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	2650438	6035471	835	-2.2248
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	6039351	6296423	120	-3.0269
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	6299046	15590276	2621	-2.623
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	15590342	15594523	3	-7.8018
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	15594889	19571480	2079	-2.6894
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	19574890	21088297	703	-3.1177
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	21088485	24510518	1243	-2.6729
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	24514859	26190025	316	-3.1134
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	26193050	26598702	93	-2.5475
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	26604818	27240184	83	-3.5207
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	27254679	27529084	40	-2.2921
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	27535030	27601827	22	-3.3136
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	27604402	27720551	36	-2.2204
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	27721084	28423938	251	-3.1568
WHIPS_p_1TCGA_220_235_N_GenomeWideSNP_6_A03_1231052	Y	28438116	59018259	183	-2.4175
