Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	61735	82315	10	0.6022
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	82650	1647890	223	0.0124
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	1650062	1672603	10	-0.8558
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	1687587	72768916	42792	0.0039
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	72768936	72811148	45	0.7289
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	72811904	101042748	18202	0.0068
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	101042848	101043340	2	-1.7949
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	101043883	110207321	5496	0.005
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	110219008	110244998	39	-0.4272
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	110246126	112690326	1955	0.0048
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	112695965	112697390	25	0.3725
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	112705956	152555527	8046	0.0172
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	152555706	152586594	35	1.058
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	152590494	152756774	168	-0.0333
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	152756806	152768700	40	-0.5357
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	152773905	161478751	5267	0.0034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	161478993	161638201	55	0.3689
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	161638480	194932473	23031	0.0051
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	194938079	194943654	31	-0.9376
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	194947254	196714873	1165	-0.0033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	196727850	196801655	87	-0.5382
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	196801784	198049417	685	0.0072
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	198055338	198057244	3	-1.4076
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	198057972	210071062	8140	0.0059
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	210081613	210082065	2	-2.2113
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	210083984	247997777	26528	0.0055
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	247998241	247998770	2	-2.0625
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	1	247999379	249224388	590	-0.009
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	12784	4917809	3632	0.0026
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	4917897	4923866	8	-1.077
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	4923934	5490556	334	0.0122
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	5492418	5494701	5	-1.1416
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	5496860	7229829	1568	0.0029
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	7233524	7233707	4	-1.1036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	7233892	14852493	5593	0.0056
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	14853131	14854087	2	-4.012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	14856914	24606954	6810	0.0118
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	24606982	24611128	14	-0.6099
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	24611727	30995579	3741	0.0045
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	30999810	31005699	12	-1.0409
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	31011462	34711474	2410	0.0061
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	34716770	34723203	20	-0.5188
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	34723301	35975973	886	0.0091
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	35977790	35987916	6	-1.5989
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	35987947	37986276	1576	0.0022
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	37987124	37994582	6	-0.8789
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	37994958	41238235	2360	0.0083
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	41238443	41242868	17	-0.7518
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	41242948	71346563	20508	0.0138
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	71346617	71346825	5	-1.5544
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	71347392	80305702	5768	5e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	80312034	80312507	2	2.2712
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	80312919	83242239	1745	0.0114
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	83244028	83247066	3	-1.5617
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	83250573	86937687	2147	0.0102
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	86953070	86970406	3	-1.7884
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	86971745	122910022	16862	0.0119
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	122910531	122920575	2	-1.5941
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	122923445	124631639	1227	0.0267
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	124631676	124631703	2	-1.7828
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	124631959	126154620	978	5e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	126156122	126156299	2	-2.308
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	126157539	146865094	12625	0.0092
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	146865183	146866934	17	1.0196
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	146877806	164170571	10292	0.0118
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	164173070	164174974	5	-0.933
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	164178661	180411003	10219	0.0076
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	180411141	180421888	31	-0.8958
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	180421906	184292758	2454	0.002
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	184293147	184322966	12	-0.5796
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	184323453	185244063	644	0.0162
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	185257053	185265323	18	-0.6936
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	185265726	203293091	10160	0.0139
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	203295775	203312201	41	-0.7227
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	203313482	203894034	233	0.0244
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	203894823	203896897	2	-1.7978
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	203899800	222471013	12015	0.0096
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	222471460	222471516	2	1.6719
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	222472562	234941290	7883	0.0099
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	234943285	234955890	43	-0.9544
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	2	234963083	243089456	5108	0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	60345	224602	157	0.0326
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	230022	232800	4	-1.0625
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	234877	8183839	7053	0.0062
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	8184528	8191363	7	-1.2047
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	8197234	16240556	5725	0.0027
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	16240629	16241179	5	-2.0061
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	16241325	65185849	32433	0.0051
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	65188453	65210315	53	-0.6642
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	65210452	68746164	2423	-0.007
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	68746259	68747413	14	0.9791
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	68748758	125712213	32379	0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	125712270	125713190	13	-0.9334
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	125714613	125720648	5	-0.0089
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	125720955	125722332	13	-1.101
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	125723017	134594419	5512	0.0026
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	134594516	134594865	2	-1.6987
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	134594886	162508268	17155	0.0044
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	162512657	162625995	70	-1.639
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	162626572	173204265	6339	0.0095
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	173209692	173215734	11	-1.1365
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	173218792	192877902	12845	0.0117
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	192877962	192879006	6	1.1703
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	192880473	194657413	1192	0.0069
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	194657457	194657645	2	-1.813
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	194657678	195390680	304	-0.0201
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	195399075	195412212	4	0.7672
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	195418263	195455924	27	0.2149
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	195455940	195474763	14	0.5386
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	195478694	195481811	4	-0.5592
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	195482370	197869530	1163	0.02
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	3	197869571	197896118	5	-0.9257
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	12281	68821	59	0.3755
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	68911	9456977	5190	-0.0038
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	9461230	9479345	9	1.0119
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	9486087	10210390	546	-0.0192
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	10223416	10234608	31	-0.7936
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	10235007	21515920	8344	-0.002
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	21518045	21580435	56	-1.1058
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	21582532	44323832	14834	0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	44326267	44330971	9	-1.1208
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	44331893	64691407	10385	0.0049
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	64692059	64708258	32	0.4527
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	64716431	65830738	676	0.0029
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	65830748	65830935	2	-1.7257
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	65830998	69338564	2200	-0.002
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	69344612	69551744	79	0.4034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	69558271	70123510	319	0.042
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	70127644	70232124	56	-0.5079
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	70236151	115173656	27365	0.0021
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	115173700	115182175	24	0.6805
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	115184229	144832286	17742	0.0084
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	144842092	144943609	70	-0.6938
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	144952528	149238314	2441	-0.0044
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	149239012	149254605	5	-1.4611
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	149254670	156968180	4718	0.0053
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	156968283	156968298	2	-1.8887
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	156968473	161880141	3076	0.0051
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	161880197	161884908	18	0.6877
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	161884919	172369346	6675	-0.0015
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	172374884	172377776	12	1.233
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	172380371	172987928	397	-0.013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	172989148	173000821	16	0.7132
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	173001831	173425227	230	0.0105
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	173428342	173441132	5	1.1148
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	173453708	187629140	9677	0.0017
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	187629497	187634610	4	-1.2153
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	4	187638358	191027923	2210	0
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	15532	11161625	9131	-0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	11162636	11162771	3	-2.3415
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	11167277	12815865	1088	-0.0109
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	12819313	12838533	12	0.5796
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	12849201	21449219	5537	-0.0015
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	21449276	21452438	6	-2.0784
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	21452496	24778376	1916	0.0011
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	24778391	24781828	14	-0.8025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	24786926	117798482	54773	0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	117805637	117810106	8	-1.1623
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	117813620	177198449	38635	0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	177227551	177232605	3	2.1904
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	177254965	180374523	1814	0.0117
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	180378710	180418103	19	0.6412
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	5	180433225	180790320	171	0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	149661	254283	101	-0.0743
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	257353	294725	22	0.5329
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	294837	9212227	7294	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	9212240	9244211	3	-1.9401
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	9257157	10486458	926	0.0059
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	10487167	10487318	3	-1.448
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	10489637	24224899	10250	-2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	24225069	24225296	2	-1.9286
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	24233032	26738777	1685	-0.0034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	26738903	26758030	12	0.5876
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	26762387	30063368	1577	-0.0088
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	30064562	30065575	5	-0.9747
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	30066031	31286276	552	0.0062
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	31286305	31309924	11	0.8207
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	31317347	32431292	500	-0.0132
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	32431552	32605576	61	0.7049
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	32605884	32686196	48	-0.005
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	32688615	32690830	11	0.7456
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	32692227	33938743	763	-0.0096
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	33942011	33942705	6	-0.9204
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	33944586	35488697	815	0.0031
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	35502616	35568574	34	0.559
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	35569119	65336942	16442	0.0075
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	65347544	65348992	2	-2.522
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	65350776	77313667	7855	0.0102
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	77315831	77327285	12	-0.8273
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	77328692	78879512	1019	0.0272
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	78881451	78898515	7	-0.8154
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	78900020	78971712	59	0.0513
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	78971781	79003679	44	0.3641
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	79003753	93574342	9308	0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	93575866	93578630	31	-1.0744
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	93582923	103734816	6219	0.0051
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	103734825	103762061	47	0.7971
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	103765470	159912854	36168	0.005
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	159914714	159914754	2	-3.3796
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	6	159914809	171051005	8080	-0.0063
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	43355	68659	31	0.6059
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	71276	13093216	8465	0.0026
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	13093951	13130069	25	-0.9319
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	13130657	22434780	7584	0.007
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	22435472	22436487	2	-3.25
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	22438754	45461886	15969	0.0096
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	45462265	45469608	4	-1.2651
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	45470280	54386505	6495	9e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	54386509	54386517	5	2.9399
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	54393488	56761500	1573	-0.0101
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	56762113	56772166	4	-1.2431
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	56772464	64594065	1562	0.0177
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	64594341	64595698	5	-1.3989
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	64637128	126045556	35739	0.0015
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	126045651	126046876	11	-1.2033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	126046877	133785195	4707	0.0033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	133785211	133798067	30	0.6205
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	133798109	158181109	15700	0.0024
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	158182029	158182680	2	-1.6825
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	7	158183049	159127004	604	0.0084
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	31254	2130233	1573	-0.009
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	2130379	2193927	45	-1.0997
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	2201385	2247827	30	0.0735
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	2254638	2259358	12	-0.8436
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	2270328	2322801	104	-1e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	2330767	2339651	2	2.4785
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	2343530	2583198	212	0.5902
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	2589916	12216009	9336	0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	12216848	12311638	60	-0.5093
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	12321897	13614717	1121	0.0124
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	13614732	13651722	45	-0.8385
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	13653184	32678866	14782	0.0032
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	32683098	32688413	7	1.9646
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	32692106	85257989	29539	0.007
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	85262883	85268666	19	-0.9264
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	85270682	95557552	5848	0.0019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	95557602	95557992	6	1.1346
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	95558115	112294294	10286	0.0032
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	112294466	112295260	8	1.3251
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	112300281	120152010	4972	0.0045
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	120154784	120162854	5	-0.9289
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	120163725	123059831	1888	-0.0045
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	123059879	123060846	9	-1.1162
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	123061062	136620783	10069	1e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	136623392	136624965	6	-1.1551
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	136630270	140254844	2971	0.0027
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	140258252	140259197	5	-1.3916
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	140259420	146213873	2965	-0.0069
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	8	146218268	146298155	43	-0.9151
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	46587	41733631	31349	0.0011
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	41842529	41985187	9	1.1401
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	42023107	68183981	305	0.0251
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	68186051	68216415	11	1.198
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	68216489	69522825	129	0.1186
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	69533038	69615613	7	1.477
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	69615628	88438003	12758	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	88441829	88445706	3	-1.5936
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	88446087	107363833	12818	0.0067
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	107363988	107366520	29	0.7574
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	107366783	126737117	14619	0.0044
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	126741528	126741731	4	-1.18
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	126741746	130000258	2024	-0.0084
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	130001050	130002630	4	-1.1318
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	130003735	136182044	3555	0.0018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	136182409	136182785	7	1.3197
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	9	136183106	141091394	2297	0.0019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	72809	3939728	3273	0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	3940373	3940618	2	-1.6143
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	3941175	4287070	309	0.0177
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	4290814	4291016	4	2.2066
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	4294071	12101692	6602	0.0031
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	12104772	12169512	30	0.6093
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	12176997	15669430	3001	-0.0028
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	15670969	15674207	8	-1.1638
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	15674416	27223903	8012	0.0042
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	27225904	27228473	13	-1.0234
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	27229993	61358267	19453	-7e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	61364115	61365182	7	-1.3492
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	61365264	67306276	4030	0.0052
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	67307923	67314446	28	0.6158
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	67322795	99314957	21176	0
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	99316319	99317388	3	-1.5673
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	99319974	111079564	7579	-1e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	111080068	111081695	2	-2.0888
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	111083873	114668952	2451	0.0027
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	114675246	114679532	4	-1.2122
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	10	114687705	135506704	15112	-0.0041
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	198510	4589066	2063	0.0077
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	4590639	4596150	6	-1.0156
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	4596449	4967251	402	-0.0175
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	4967376	4976907	46	0.951
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	4977011	5783923	784	0.003
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	5787405	5809139	33	-0.6728
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	5809338	18939170	9418	-0.0035
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	18940093	18960750	41	-0.2973
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	18961065	21846783	2618	-0.0094
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	21846809	21846894	2	-1.6774
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	21847506	45453331	16566	2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	45455431	45487231	37	-1.2041
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	45490289	49708375	1869	0.002
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	49710861	49757767	20	-0.9085
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	49758273	90566513	21320	0.0021
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	90568187	90571038	4	-3.8665
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	90572164	93697958	2256	0.001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	93698060	93701588	8	-0.9683
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	93704460	124085462	21388	0.006
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	124086422	124102798	13	0.584
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	124102960	131369700	5426	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	131370991	131371019	2	-1.955
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	11	131371121	134944770	2823	-0.0112
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	150442	9630556	6203	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	9633870	9734970	27	0.8273
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	9735686	11215372	1039	0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	11216849	11241532	14	-1.2519
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	11251874	33301426	15591	0.0029
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	33301520	33306947	22	-0.7826
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	33306965	55583423	11171	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	55584215	55584697	3	-1.5268
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	55585169	61131421	3296	0.0035
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	61132706	61198326	30	-0.9577
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	61210397	106129715	29106	0.0053
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	106135942	106137744	3	-1.405
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	106138931	130678895	16776	-0.0035
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	130679553	130680175	3	-1.3669
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	12	130680437	133778189	1776	-0.0171
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	19026949	19143824	12	0.6408
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	19174634	20121459	554	0.0043
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	20123895	20123910	2	1.8474
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	20124501	53059216	22925	0.0019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	53071152	53157318	17	-0.8829
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	53159851	57751096	2619	-0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	57758270	57778380	34	-2.5694
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	57789714	60933315	1924	0.0082
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	60933529	60940906	2	-1.4993
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	60944561	63553646	1493	0.0081
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	63554051	63554063	2	-2.1546
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	13	63556791	115108397	34735	0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	14	19002124	74001123	34334	0.0033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	14	74006707	74029915	10	0.9314
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	14	74030731	106526966	20806	-0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	14	106530364	106567100	18	0.5766
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	14	106569463	106715489	66	0.0228
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	14	106717356	106727469	8	-0.7479
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	14	106728162	106796025	29	0.219
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	14	106796228	106818557	8	-1.7083
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	14	106820744	107285437	306	0.0354
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	20016328	20203961	47	0.0387
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	20206939	20573344	39	-0.7791
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	20574158	20820159	70	-0.3902
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	20830374	22293227	157	-1.0085
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	22302006	23282811	416	-0.018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	23288349	23290800	2	-2.0602
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	23296600	24669745	696	-2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	24674751	24718173	39	-0.4461
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	24718596	30370031	3631	-0.0144
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	30386411	30887956	110	-0.5876
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	30900878	32615633	1086	0.0138
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	32618066	32902983	35	-0.3114
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	32904615	34060601	1052	-0.0017
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	34061705	34062305	2	-1.622
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	34065524	34714123	434	0.0034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	34719795	34830253	70	-0.8271
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	34830388	76891241	26462	2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	76891511	76895775	21	0.8755
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	15	76902179	102469040	17678	0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	60777	15048860	11137	-0.0013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	15048903	15085684	43	0.3908
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	15087171	20501023	2783	-0.0116
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	20512781	20530514	20	-0.9035
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	20533446	26915462	3934	0.0033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	26918154	26918411	2	-3.6758
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	26921887	32307220	2189	0.0052
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	32339105	33631830	217	0.3687
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	33643399	47056546	745	-0.0026
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	47059354	47060463	2	-2.5253
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	16	47060494	90287535	31339	-0.0083
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	526	18319862	11432	-0.0076
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	18355392	18412558	18	0.9841
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	18426461	44213712	12081	-0.0059
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	44214166	44364170	87	-0.2712
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	44394412	48383666	1928	0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	48384501	48384514	2	-1.4603
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	48386312	52851930	2873	0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	52852133	52854478	2	-1.5602
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	52859991	55687489	2250	-0.0039
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	55688333	55688993	2	-1.7937
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	17	55691993	81049726	14601	0.0035
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	11543	20053368	11164	0.0013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	20054211	20065977	12	-1.0606
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	20068749	28034323	5025	-0.0018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	28037427	28037840	3	-1.1514
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	28038282	28162118	98	-0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	28168434	28168602	2	-1.4883
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	28169375	40051678	7772	0.0023
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	40056569	40057471	24	-0.7779
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	40057767	51204135	7677	0.003
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	51207209	51209577	4	-1.5954
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	51210640	64953649	9426	0.0083
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	64959207	64967265	21	-0.648
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	64967718	65298258	239	-0.013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	65304182	65315347	10	-0.9259
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	18	65318483	78015057	9349	0.0015
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	19	90910	52131813	24946	-0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	19	52142352	52148197	11	-0.9007
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	19	52154905	59097854	4386	0.003
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	20	61305	1560999	1206	-0.0028
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	20	1561580	1598106	43	-0.6291
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	20	1598336	12455609	8322	0.0047
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	20	12456119	12478124	11	-0.8236
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	20	12481269	62916068	32900	0.0039
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	20	62954695	62956153	5	1.3786
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	10736871	14456416	133	0.0034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	14464379	14538557	13	-1.4827
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	14541369	21800652	4874	-0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	21800805	21835622	59	-0.9639
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	21846633	22000912	120	0.0129
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	22005845	22010741	5	-0.8319
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	22011190	22191709	141	0.02
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	22193458	22194255	2	-1.5826
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	22194877	28194904	4611	0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	28200072	28200722	7	-0.9804
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	28204073	45231959	12816	-0.0034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	45238052	45240137	5	-1.3776
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	21	45244721	48096957	1616	0.0041
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	22	16052528	24241766	4551	0.0017
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	22	24242353	24244558	4	-2.6564
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	22	24245030	24337307	66	0.0537
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	22	24337949	24396814	21	0.8414
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	22	24401529	50297435	18543	-0.0056
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	22	50301852	50305386	2	-2.7216
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	22	50306087	51234455	375	-0.0124
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	X	168477	16472204	10123	-0.0023
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	X	16472224	16480599	33	-0.8298
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	X	16480658	134749203	61748	0.0043
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	X	134749426	134800318	32	0.6043
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	X	134802306	134848927	33	1.0447
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	X	134854929	134947387	42	0.5086
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	X	134947830	155182354	12385	0.0041
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C03_1388114	Y	2652734	59018259	8166	-1.2633
