Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	1	3208470	245880329	129054	-5e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	2	474222	9917656	5731	0.001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	2	9920644	9922759	2	-1.4034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	2	9925182	122762523	58545	0.003
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	2	122766309	122773849	9	-0.9939
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	2	122776177	242124735	66995	0.0041
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	3	526235	199023074	106368	0.002
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	4	1043934	20668242	12286	4e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	4	20669189	20682284	9	-0.7053
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	4	20687104	28925172	5384	-0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	4	28927337	28927347	2	-2.1757
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	4	28927363	66249651	18555	0.0018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	4	66249774	66249793	2	-1.2873
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	4	66251363	130415038	35239	0.0013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	4	130417246	130419178	3	-2.0072
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	4	130424113	189836143	31251	-6e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	5	967233	26638197	15315	0.0019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	5	26638522	26638654	3	-1.1509
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	5	26639061	180293075	85169	6e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	6	959281	148048837	82884	5e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	6	148049830	148050573	2	-1.8721
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	6	148056240	148543637	413	0.0154
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	6	148548305	148548637	2	-1.2517
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	6	148548948	150031150	1014	-0.0102
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	6	150038413	150038687	2	-1.3573
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	6	150041480	170745844	12156	2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	7	671810	158077879	81314	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	8	607667	145304484	81510	2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	9	779932	140058573	67999	-3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	10	405240	135075077	80863	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	11	446120	126440487	72470	-0.0018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	11	126441644	126441766	3	-1.0848
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	11	126443546	133647740	4776	0.0045
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	12	760163	12934386	6688	-0.0011
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	12	13229293	13284461	54	-1.0482
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	12	13294489	131671419	67182	0
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	13	18348806	30599807	7473	-2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	13	30601815	30603301	4	-0.9598
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	13	30603821	114005560	49170	0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	19571208	23741809	1574	-0.0032
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	23742107	23743925	5	-1.3096
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	23750766	38994158	9027	8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	38995549	38996639	2	-1.3755
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	39001615	39432154	219	-0.0094
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	39432829	39470973	11	-0.9584
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	39478291	45660660	2358	0.0021
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	45661808	45661927	2	-1.6795
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	45662650	53421047	4631	-0.0062
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	53421459	53425183	7	-0.6864
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	14	53425298	105059083	31598	1e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	15	21238778	99701830	44518	8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	16	593460	87907437	40855	-5e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	17	933971	78510305	36970	7e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	18	319586	75210228	42661	0.0023
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	19	235018	41371837	14644	0.0022
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	19	41371913	41381644	3	1.0327
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	19	41382714	43935921	1236	-0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	19	43940911	44000030	58	0.5178
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	19	44002927	63570038	8001	0.0021
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	20	403764	61690281	37266	7e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	21	14269492	46503202	20579	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	22	15803930	46314532	15757	-0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	22	46316091	46538068	150	0.5707
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	22	46538298	46548694	13	0.8723
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	22	46552924	46676723	102	0.5161
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	22	46678050	47717016	902	0.0051
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_C11_1388136	X	3167107	154558783	63560	0.0013
