Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	3208470	55346826	27586	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	55349543	55349604	2	-1.6776
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	55349750	59410131	3245	-0.005
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	59410773	59411207	3	-1.3419
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	59417200	61266576	1178	0.001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	61270540	61272120	3	-1.4249
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	61275134	65812446	3178	0.0027
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	65815486	65815700	3	-1.2304
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	65818515	97314824	19102	8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	97315067	97315385	2	-1.6042
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	97317917	173678310	29206	0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	173678386	173678442	2	-1.9754
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	173680056	206547851	20038	0.0053
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	206547872	206548333	5	-0.9474
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	206550734	228051536	13811	0.0023
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	228051563	228052018	5	-1.0753
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	228055248	245880329	11640	-7e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	474222	58056818	33730	0.004
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	58059033	58061251	2	-1.7921
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	58061578	207400141	76488	0.0058
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	207400658	207400672	2	-1.5696
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	207403580	230026725	14095	0.0032
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	230027159	230035887	9	-1.1151
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	230038143	242124735	6914	0.0043
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	526235	7364984	2591	-0.0011
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	7365505	7365577	2	-3.1917
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	7365862	24754838	10489	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	24755270	24760411	8	-0.7117
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	24763908	31741728	4538	-0.0033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	31741774	31742032	2	-1.9654
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	31746944	69558067	21901	0.004
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	69559910	69559965	2	-1.4294
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	69561437	70305112	596	-0.0046
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	70305813	70305992	2	-1.0733
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	70309882	76971147	3980	0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	76978533	76978869	2	-1.2585
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	76980871	80544137	1988	0.0066
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	80549171	80549699	3	1.0662
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	80551993	82838061	1264	0.0046
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	82838682	82838867	2	-2.4243
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	82841433	199023074	58961	0.0056
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	1043934	26051306	15867	0.0051
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	26052011	26060424	5	-1.1582
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	26064769	27713417	1024	0.0144
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	27717906	27740874	14	-1.0074
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	27747666	35522844	4421	0.0142
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	35524746	35527801	5	-1.4346
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	35538108	77642097	20437	0.0044
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	77643030	77643282	4	-1.046
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	77646851	94773640	9828	0.0028
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	94776217	94776709	3	-1.2229
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	94777583	102744068	4562	0.0019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	102747081	102749324	3	-1.5157
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	102761356	175719362	39961	0.0044
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	175719696	175720644	2	-1.4155
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	175722822	189836143	6566	0.0052
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	5	967233	180293075	100446	0.0027
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	959281	68287224	37021	0.0026
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	68290230	68492592	121	-1.0403
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	68495182	93413648	14137	0.0029
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	93414792	93414806	2	1.4279
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	93417570	143581526	28745	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	143589974	143590270	3	1.162
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	143591614	152343386	5855	0.0015
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	152345925	152353601	12	-0.9973
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	152355734	170745844	10546	0.0031
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	671810	32100115	17595	0.0018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	32102316	32102446	3	-1.6019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	32107051	73780040	20355	0.0019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	73835664	73940213	7	-0.8843
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	73973397	111629490	18725	0.0104
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	111629824	111630666	2	-1.3638
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	111630866	114442547	1215	-0.0046
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	114445722	114452015	6	-1.053
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	114452124	158077879	23373	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	8	607667	15529412	7279	0.0061
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	8	15537506	15537788	3	-1.3606
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	8	15539976	23297971	5568	0.006
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	8	23301605	23305045	3	-1.5792
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	8	23305045	145304484	68641	0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	9	779932	4709031	2826	0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	9	4712318	4712462	2	1.6559
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	9	4719631	140058573	65145	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	405240	71466364	41192	0.0037
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	71467726	71467806	2	-1.5094
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	71468689	72659151	749	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	72661101	72661378	2	-2.0001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	72661654	84457943	6915	-0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	84459990	84460867	4	-0.9167
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	84467878	89342262	3097	0.004
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	89342326	89344902	2	-1.1424
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	89345293	89859199	498	0.0203
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	89859308	89862183	3	-1.3056
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	89865663	135075077	28365	-0.0028
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	11	446120	95815179	52145	-0.0021
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	11	95816089	95816402	2	-1.6908
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	11	95820257	133647740	25065	0.0034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	760163	57210556	30123	0.0039
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	57210983	57210993	2	-2.2172
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	57211497	74166964	10327	0.0033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	74171986	74174518	2	-1.5491
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	74176919	120019733	28163	6e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	120020328	120022886	6	-1.2186
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	120027356	131671419	5282	0.0052
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	18348806	83263674	37439	0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	83266990	83267045	3	-1.2293
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	83267924	108089770	15885	0.001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	108090212	108090227	2	-1.6388
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	108090301	114005560	3307	0.0082
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	14	19571208	28793480	4457	0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	14	28797605	28798105	2	-1.9923
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	14	28801413	105059083	44961	0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	15	21238778	99701830	44501	9e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	16	593460	87907437	40832	-0.001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	933971	68562204	33068	0.0013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	68565908	68568739	2	-1.3651
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	68569148	72727081	1612	-0.0018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	72728774	72743351	10	0.6411
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	72745309	78510305	2260	-0.0011
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	18	319586	75210228	42644	-5e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	19	235018	46660649	17089	0.0023
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	19	46668500	46699268	23	-1.1359
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	19	46724247	63570038	6813	2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	20	403764	61690281	37251	5e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	21	14269492	46503202	20566	0.0028
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	22	15803930	47717016	16921	-0.0031
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	3167107	6399045	738	-0.0151
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	6399079	6399152	2	1.306
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	6399443	16860175	4776	0.0052
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	16860465	16861643	6	-1.249
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	16870518	115499048	40307	0.002
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	115505424	115505675	3	1.2561
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	115508983	154558783	17767	0.001
