Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	3218610	5302315	1357	-0.0034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	5303371	5303446	2	-1.2462
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	5307297	6924587	912	0.0092
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	6926797	6927026	2	-1.479
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	6927486	55574238	25310	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	55576955	55577016	2	-1.6776
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	55577162	59637543	3245	-0.005
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	59638185	59638619	3	-1.3419
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	59644612	61493988	1178	0.001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	61497952	61499532	3	-1.4249
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	61502546	66039858	3178	0.0027
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	66042898	66043112	3	-1.2304
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	66045927	97542236	19167	7e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	97542479	97542797	2	-1.6042
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	97545329	175411687	29202	0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	175411763	175411819	2	-1.9754
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	175413433	208481228	20039	0.0053
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	208481249	208481710	5	-0.9474
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	208484111	229984913	13810	0.0024
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	229984940	229985395	5	-1.0753
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	1	229988625	247813706	11638	-7e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	484222	58203314	33726	0.004
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	58205529	58207747	2	-1.7921
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	58208074	230318481	90581	0.0053
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	230318915	230327643	9	-1.1151
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	2	230329899	242476062	6914	0.0042
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	2212571	7389984	2590	-0.0011
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	7390505	7390577	2	-3.1917
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	7390862	24779834	10490	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	24780266	24785407	8	-0.7117
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	24788904	31766724	4536	-0.0033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	31766770	31767028	2	-1.9654
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	31771940	69475377	21902	0.004
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	69477220	69477275	2	-1.4294
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	69478747	76888457	4576	0.0011
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	76895843	76896179	2	-1.2585
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	76898181	80461447	1988	0.0066
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	80466481	80467009	3	1.0662
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	80469303	82755371	1264	0.0046
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	82755992	82756177	2	-2.4243
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	3	82758743	197538677	58958	0.0056
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	1053934	26442208	15867	0.0051
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	26442913	26451326	5	-1.1582
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	26455671	28104319	1024	0.0144
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	28108808	28131776	14	-1.0074
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	28138568	35846449	4421	0.0142
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	35848351	35851406	5	-1.4346
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	35861713	77423073	20434	0.0044
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	77424006	77424258	4	-1.046
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	77427827	94554617	9830	0.0028
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	94557194	94557686	3	-1.2229
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	94558560	102525045	4563	0.0019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	102528058	102530301	3	-1.5157
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	102542333	175482787	39967	0.0043
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	175483121	175484069	2	-1.4155
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	4	175486247	188763651	6565	0.0052
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	5	914233	180360469	100446	0.0027
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	1014281	68230503	37024	0.0026
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	68233509	68435871	121	-1.0403
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	68438461	93356927	14136	0.003
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	93358071	93358085	2	1.4279
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	93360849	143539833	28750	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	143548281	143548577	3	1.162
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	143549921	152301693	5857	0.0014
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	152304232	152311908	12	-0.9973
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	6	152314041	170903919	10546	0.0031
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	705284	32133590	17596	0.0018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	32135791	32135921	3	-1.6019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	32140526	74142104	20354	0.0019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	74197728	74302277	7	-0.8843
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	74335461	111842254	18726	0.0104
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	111842588	111843430	2	-1.3638
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	111843630	114655311	1215	-0.0046
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	114658486	114664779	6	-1.053
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	7	114664888	158385118	23373	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	8	617667	145232496	81501	0.003
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	9	789932	4719031	2826	0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	9	4722318	4722462	2	1.6559
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	9	4729631	140938752	65157	-9e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	415240	71796358	41191	0.0038
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	71797720	71797800	2	-1.5094
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	71798683	72989145	749	3e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	72991095	72991372	2	-2.0001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	72991648	84467963	6916	-0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	84470010	84470887	4	-0.9167
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	84477898	89352282	3097	0.0041
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	89352346	89354922	2	-1.1424
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	89355313	89869219	498	0.0203
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	89869328	89872203	3	-1.3056
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	10	89875683	135225087	28363	-0.0029
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	11	456120	96175531	52139	-0.0022
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	11	96176441	96176754	2	-1.6908
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	11	96180609	134142530	25061	0.0034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	889902	58924289	30118	0.0039
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	58924716	58924726	2	-2.2172
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	58925230	75880697	10327	0.0033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	75885719	75888251	2	-1.5491
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	75890652	121535350	28164	6e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	121535945	121538503	6	-1.2186
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	12	121542973	133161346	5281	0.0052
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	19450806	84365673	37436	0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	84368989	84369044	3	-1.2293
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	84369923	109291769	15884	0.001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	109292211	109292226	2	-1.6388
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	109292300	111771877	1882	0.0126
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	111772579	111775154	2	-1.3263
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	13	111776289	114987458	1423	0.0043
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	14	20501368	29723729	4457	0.0016
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	14	29727854	29728354	2	-1.9923
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	14	29731662	105988038	44959	0.0017
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	15	23687685	101884307	44499	9e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	16	653459	89379936	40766	-0.001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	987221	71050609	33068	0.0013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	71054313	71057144	2	-1.3651
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	71057553	75215486	1612	-0.0018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	75217179	75231756	10	0.6411
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	17	75233714	80917016	2260	-0.0011
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	18	329586	77109240	42641	-5e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	19	284018	41968809	17089	0.0023
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	19	41976660	42007428	23	-1.1359
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	19	42032407	58878226	6813	2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	20	455764	62219837	37254	5e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	21	15347621	47678774	20565	0.0028
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	22	17423930	49331012	16920	-0.0031
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	3157107	6389045	738	-0.0151
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	6389079	6389152	2	1.306
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	6389443	16950254	4777	0.0051
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	16950544	16951722	6	-1.249
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	16960597	115585020	40323	0.002
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	115591396	115591647	3	1.2561
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D07_1388166	X	115594955	154905589	17767	0.001
