Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	1	3218610	222293696	113172	2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	1	222294895	222296975	6	-1.0472
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	1	222298242	222762773	239	-0.0111
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	1	222763215	222764791	4	-1.4568
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	1	222767443	230984665	4835	0.0013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	1	230988704	230988724	2	-2.5536
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	1	230992134	247813706	10836	0.0081
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	2	484222	207434587	110075	0.0053
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	2	207438493	207439653	2	-1.8315
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	2	207441588	242476062	21187	0.0082
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	3	2212571	7553145	2747	0.0072
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	3	7553165	7553261	4	-1.2347
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	3	7558865	12629965	3437	0.0039
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	3	12630760	12809220	141	0.8618
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	3	12811628	160353674	81416	9e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	3	160362127	160362285	2	1.7522
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	3	160370907	197538677	18604	0.0034
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	1053934	75746632	40699	-6e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	75746665	75746741	3	-1.3497
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	75747264	109490564	19292	-6e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	109492432	109520265	3	-1.5734
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	109530325	129198402	11030	-0.004
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	129200015	129200678	3	-1.7813
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	129204340	162999650	18454	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	163000185	163000409	2	2.0253
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	163004732	177144954	7584	0.0058
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	177145839	177148761	8	-0.8525
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	177151309	181055616	2021	-0.0022
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	181056626	181056994	2	-2.2002
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	4	181057240	188763651	3623	0.013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	5	914233	98107141	52285	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	5	98108649	98109029	3	-1.6448
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	5	98111312	111974965	6846	-0.0038
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	5	111976736	111977323	4	-1.1421
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	5	111978946	122309860	6138	-0.0036
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	5	122313534	122313599	3	-1.4063
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	5	122315208	172982569	31351	0.0042
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	5	172983279	172984562	5	-1.0312
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	5	172987283	180360469	3840	0.0117
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	1014281	2316808	960	0.0031
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	2318419	2318449	2	-1.6839
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	2318630	6041709	2573	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	6041835	6042429	8	-0.8844
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	6044118	24947805	13307	0.0035
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	24951199	24951809	5	-1.4367
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	24954235	158506454	73062	-8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	158506476	158506871	3	-1.4614
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	158507840	164945838	3915	0.0154
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	164948157	164948302	2	-1.9606
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	164950918	169559095	1969	-0.0154
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	169560012	169562472	4	-1.3221
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	6	169562742	170903919	663	-0.0253
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	705284	16169658	7780	0.0012
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	16171560	16172259	2	1.8943
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	16176841	24035127	4405	0.0023
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	24039878	24040383	2	1.7047
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	24040817	51083540	17510	0.0011
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	51083822	51084321	4	-1.1613
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	51087022	55097799	2695	0.0105
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	55099784	55099837	3	-1.6149
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	55099852	75437685	5745	0.0129
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	75438763	75438780	2	-1.6287
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	75439696	90645571	7379	-0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	90646392	90652834	9	-0.7393
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	90654715	135709744	24091	-4e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	135710436	135711160	2	-1.6001
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	135713745	142576329	3688	0.0039
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	142579929	142580188	3	-1.2967
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	142581288	154096200	5448	0.0117
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	154096640	154097574	2	-1.6572
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	154097732	158181109	2460	0.0084
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	158182029	158182680	2	-1.6632
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	7	158183049	158385118	77	0.0303
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	8	617667	73195041	39475	0.0033
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	8	73197047	73197155	2	-1.7837
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	8	73197941	145232496	42039	0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	789932	18374849	10744	0.0032
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	18380910	18380943	2	-2.1862
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	18381358	18998656	611	0.0117
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	19004567	19007945	2	-1.324
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	19008550	20683404	1235	0.0026
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	20684602	20684778	2	-1.7378
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	20685097	90360880	24276	0
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	90363086	90363406	4	-1.4055
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	90363604	127036838	24136	-6e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	127040978	127041335	2	-2.0443
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	9	127046844	140938752	6997	-0.0043
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	10	415240	135225087	80851	0
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	456120	1630177	343	0.0077
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	1631666	1632500	5	-1.1556
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	1634961	3267131	633	0.0215
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	3364167	3364238	2	-1.6421
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	3364358	34947355	21027	7e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	34947370	34951727	17	-0.5733
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	34955841	107227480	37021	0.0017
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	107229764	107229948	4	-1.341
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	107230127	126789405	13268	-0.0017
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	126792807	126792818	2	-2.4886
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	11	126792891	134142530	4910	0.0019
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	12	889902	25366534	14218	-0.0037
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	12	25366736	25378389	27	-0.505
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	12	25378408	133161346	59670	6e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	13	19450806	114987458	56643	0.0038
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	14	20501368	105988038	49430	2e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	15	23687685	101884307	44512	-0.0024
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	16	653459	86664868	39664	0.0014
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	16	86665459	86666525	5	-1.4789
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	16	86666902	89379936	1109	-0.0131
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	987221	9478674	4249	0.0015
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	9479676	9479877	2	-2.2294
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	9481684	17147625	3838	-0.008
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	17151141	17151938	2	-1.5812
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	17157662	31848685	4782	0.0056
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	31851875	31852975	4	-1.15
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	31853074	45425177	5311	0.0018
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	45428506	45442019	2	-2.0115
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	45444868	70789650	14670	-0.0023
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	70792557	70794462	4	-1.2896
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	17	70795935	80917016	4104	-0.0056
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	18	329586	44268648	23640	9e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	18	44273090	44273125	2	-1.707
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	18	44275622	58987034	9613	-0.0031
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	18	58990420	58990946	3	-1.3999
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	18	58993295	60922851	1299	-0.01
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	18	60924426	60924613	6	-1.1909
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	18	60924970	72944358	5369	-0.0058
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	18	72947246	72947932	3	-1.4949
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	18	72948370	77109240	2718	-0.0027
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	19	284018	58878226	23936	0.0076
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	20	455764	43807472	24958	0.0055
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	20	43809587	43810961	5	-1.0195
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	20	43813636	62219837	12300	-0.0062
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	21	15347621	47678774	20576	8e-04
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	22	17423930	30149778	4886	0.0013
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	22	30150327	30150549	2	-1.8005
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	22	30153271	49331012	12036	-0.0025
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	X	3157107	6308412	669	0.0054
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	X	6310778	6311722	6	-1.1585
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	X	6312411	104873513	40186	0.0031
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	X	104875612	104876195	8	-1.3273
STOPE_p_TCGAb3_58_59_60_61_62_N_GenomeWideSNP_6_D09_1388004	X	104876889	154905589	22758	0.0017
