Sample	Chromosome	Start	End	Num_Probes	Segment_Mean
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	1	3218610	247813706	128068	0.0019
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	2	484222	242476062	130182	0.0063
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	3	2212571	197538677	105469	0.0018
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	4	1053934	125459405	68450	0.0029
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	4	125460351	125462935	3	-1.6266
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	4	125463025	188762240	33329	0.0025
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	5	914233	180360469	99580	0.0029
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	6	1014281	170903919	95641	-4e-04
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	7	705284	52710740	30668	0.0032
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	7	52714035	52714217	2	-2.7277
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	7	52715515	158385118	50003	0.0034
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	8	617667	32169437	18714	5e-04
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	8	32169540	32171962	3	-1.5947
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	8	32172010	73164998	20414	0.0024
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	8	73175912	73178681	2	-2.0387
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	8	73182389	145232496	41682	0.0041
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	9	789932	31193235	18446	5e-04
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	9	31194999	31233318	36	-0.9817
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	9	31234838	140938752	48910	0.0053
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	10	415240	135225087	80161	0.004
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	11	456120	134142530	76540	0.0046
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	12	889902	133161346	73302	0.001
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	13	19450806	66784032	26649	0.0012
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	13	66791724	66798610	4	-1.6
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	13	66798873	114987458	29397	0.0017
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	14	20501368	105988038	48989	0.0042
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	15	23687685	101884307	44129	0.0028
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	16	653459	89379936	40469	0.0073
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	17	987221	80917016	36731	0.0019
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	18	329586	7936914	3941	-0.0036
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	18	7936938	7940117	3	-1.6423
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	18	7943219	77109240	38331	0.001
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	19	284018	58878226	23819	0.0045
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	20	455764	62219837	37002	0.004
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	21	15347621	47678774	20407	-0.0045
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	22	17423930	49331012	16823	0.0035
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	X	3157107	9259978	1237	-0.0015
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	X	9260045	9261210	2	-4.1923
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	X	9263909	45848422	17790	0.0036
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	X	45848924	45849008	2	-3.9885
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	X	45849110	56768230	3975	0.0073
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	X	56768856	56769206	2	-4.3735
AQUAE_p_TCGA_112_304_b2_N_GenomeWideSNP_6_D01_1348260	X	56773078	154905589	40056	0.0091
