Investigation Title	miRNA Analysis of TCGA LAML Samples using Illumina GAIIx
Experimental Design	transcript_identification_design	is_expressed_design
Experimental Design Term Source REF	MGED Ontology	MGED Ontology
Experimental Factor Name	tumor type
Experimental Factor Type	disease_state_design
Experimental Factor Type Term Source REF	MGED Ontology

Person Last Name	Marra	Mungall	Chu
Person First Name	Marco	Andrew	Andy
Person Mid Initials
Person Email	mmarra@bcgsc.ca	amungall@bcgsc.ca	achu@bcgsc.ca
Person Phone	604-707-5900 extn 67-6082	604-675-8000 extn 66-7937
Person Address	"100-570 W 7th Ave, Vancouver, BC, V5Z 4S6, Canada"	"675 W 10th Ave, Vancouver, BC, V5Z 1L3, Canada"	"100-570 W 7th Ave, Vancouver, BC, V5Z 4S6, Canada"
Person Affiliation	"Genome Sciences Centre, BCCA"	"Genome Sciences Centre, BCCA"	"Genome Sciences Centre, BCCA"
Person Roles	investigator	investigator	submitter

Date of Experiment	2011-06-21
Public Release Date	2011-07-31

Experiment Description	miRNA Analysis of TCGA LAML Samples using Illumina GAIIx
Protocol Name	bcgsc.ca:reverse_transcription:IlluminaGA_miRNASeq:01	bcgsc.ca:library_preparation:IlluminaGA_miRNASeq:01	bcgsc.ca:DNA_Sequencing:IlluminaGA_miRNASeq:01	bcgsc.ca:alignment:IlluminaGA_miRNASeq:01	bcgsc.ca:gene_expression:IlluminaGA_miRNASeq:01	bcgsc.ca:gene_expression:IlluminaGA_miRNASeq:01
Protocol Type	reverse_transcription	library_preparation	DNA sequencing	consensus_mRNA	gene_expression	gene_expression
Protocol Type	Term Source REF	MGED Ontology	NCI EVS	NCI EVS	MGED Ontology	MGED Ontology	MGED Ontology
Protocol Description	Ligation of linkers and reverse transcription of small RNAs	"PCR with sequencing primers, size fractionation"	Sequencing on Illumina GAIIx	Alignment of reads to reference genome	Read counts per mirna isoform	Normalized expression per mirna gene

SDRF Files	bcgsc.ca_LAML.IlluminaGA_miRNASeq.sdrf.txt

Term Source Name	MGED Ontology	NCI EVS
Term Source File	http://mged.sourceforge.net/ontologies/MGEDontology.php	http://evs.nci.nih.gov/
Term Source Version	1.3.1.1	2010-09
