Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Comment[Alternate ID]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[NOMINAL_SDEV]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Description	Protocol REF	Performer	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Parameter Value[Software Versions]	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAA-01A-01D PPTPWT.TARGET-50-CAAAAA-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	22.2	PPTPWT.TARGET-50-CAAAAA-01A-01D-1_1AMP	SRX398126	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-CAAAAA-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAA-01A-01D PPTPWT.TARGET-50-CAAAAA-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID01.bam	SRR1057335	@dbgap@:reads/SRP012006/SRS118123/SRX398126/SRR1057335/SRR1057335.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAA-01A-01D PPTPWT.TARGET-50-CAAAAA-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	22.2	PPTPWT.TARGET-50-CAAAAA-01A-01D-1_1AMP	SRX398126	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-CAAAAA-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAA-01A-01D PPTPWT.TARGET-50-CAAAAA-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID01.bam	SRR1057335	@dbgap@:reads/SRP012006/SRS118123/SRX398126/SRR1057335/SRR1057335.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAA-01A-01D PPTPWT.TARGET-50-CAAAAA-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	22.2	PPTPWT.TARGET-50-CAAAAA-01A-01D-1_1AMP	SRX398126	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-CAAAAA-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAA-01A-01D PPTPWT.TARGET-50-CAAAAA-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID01.bam	SRR1057335	@dbgap@:reads/SRP012006/SRS118123/SRX398126/SRR1057335/SRR1057335.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-01A-01D	DNA	EFO	SRS118123	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-CAAAAA-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAA-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-CAAAAA-01A-01D	SRX959496	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-CAAAAA-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-CAAAAA-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAA-01A-01D run	sequencing assay	EFO	246	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-CAAAAA-01A-01D.bam	SRR1919218	@dbgap@:reads/SRP012006/SRS118123/SRX959496/SRR1919218/SRR1919218.sra	2							
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAA-10A-01D PPTPWT.TARGET-50-CAAAAA-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	20.7	PPTPWT.TARGET-50-CAAAAA-10A-01D-1_1AMP	SRX398127	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-CAAAAA-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAA-10A-01D PPTPWT.TARGET-50-CAAAAA-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID02.bam	SRR1057336	@dbgap@:reads/SRP012006/SRS118124/SRX398127/SRR1057336/SRR1057336.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAA-10A-01D PPTPWT.TARGET-50-CAAAAA-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	20.7	PPTPWT.TARGET-50-CAAAAA-10A-01D-1_1AMP	SRX398127	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-CAAAAA-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAA-10A-01D PPTPWT.TARGET-50-CAAAAA-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID02.bam	SRR1057336	@dbgap@:reads/SRP012006/SRS118124/SRX398127/SRR1057336/SRR1057336.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAA-10A-01D PPTPWT.TARGET-50-CAAAAA-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	207	20.7	PPTPWT.TARGET-50-CAAAAA-10A-01D-1_1AMP	SRX398127	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-CAAAAA-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAA-10A-01D PPTPWT.TARGET-50-CAAAAA-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID02.bam	SRR1057336	@dbgap@:reads/SRP012006/SRS118124/SRX398127/SRR1057336/SRR1057336.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-CAAAAA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAHYBE	TARGET-50-CAAAAA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAA-10A-01D	DNA	EFO	SRS118124	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-CAAAAA-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAA-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-CAAAAA-10A-01D	SRX959502	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-CAAAAA-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-CAAAAA-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAA-10A-01D run	sequencing assay	EFO	249	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-CAAAAA-10A-01D.bam	SRR1919223	@dbgap@:reads/SRP012006/SRS118124/SRX959502/SRR1919223/SRR1919223.sra	2							
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01D	DNA	EFO	SRS160339	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP01A-1_1pA	SRX099693	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_3.bam	SRR566161	@dbgap@:reads/SRP012006/SRS160339/SRX099693/SRR566161/SRR566161.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01D	DNA	EFO	SRS160339	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP01A-1_1pA	SRX099693	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_3.bam	SRR566161	@dbgap@:reads/SRP012006/SRS160339/SRX099693/SRR566161/SRR566161.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01D	DNA	EFO	SRS160339	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP01A-1_1pA	SRX099693	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_3.bam	SRR566161	@dbgap@:reads/SRP012006/SRS160339/SRX099693/SRR566161/SRR566161.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01D	DNA	EFO	SRS160339	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP01A-1_1pA	SRX099693	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_3.bam	SRR566161	@dbgap@:reads/SRP012006/SRS160339/SRX099693/SRR566161/SRR566161.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01D	DNA	EFO	SRS160339	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP01A-1_1pA	SRX099693	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_3.bam	SRR566161	@dbgap@:reads/SRP012006/SRS160339/SRX099693/SRR566161/SRR566161.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01D	DNA	EFO	SRS160339	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP01A-1_1pA	SRX099693	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-01A-01D ING_WTSRG.CAAAAP01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110127_SN580_0044_A81ADRABXX_3.bam	SRR566161	@dbgap@:reads/SRP012006/SRS160339/SRX099693/SRR566161/SRR566161.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-01A-01D	DNA	EFO	SRS160339	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-CAAAAP-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAP-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-CAAAAP-01A-01D	SRX959495	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-CAAAAP-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-CAAAAP-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAP-01A-01D run	sequencing assay	EFO	320	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-CAAAAP-01A-01D.bam	SRR1919217	@dbgap@:reads/SRP012006/SRS160339/SRX959495/SRR1919217/SRR1919217.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-10A-01D	DNA	EFO	SRS160340	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP10A-1_1pA	SRX099694	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_7.bam	SRR566168	@dbgap@:reads/SRP012006/SRS160340/SRX099694/SRR566168/SRR566168.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-10A-01D	DNA	EFO	SRS160340	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP10A-1_1pA	SRX099694	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_7.bam	SRR566168	@dbgap@:reads/SRP012006/SRS160340/SRX099694/SRR566168/SRR566168.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-10A-01D	DNA	EFO	SRS160340	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP10A-1_1pA	SRX099694	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_7.bam	SRR566168	@dbgap@:reads/SRP012006/SRS160340/SRX099694/SRR566168/SRR566168.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-10A-01D	DNA	EFO	SRS160340	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP10A-1_1pA	SRX099694	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_7.bam	SRR566168	@dbgap@:reads/SRP012006/SRS160340/SRX099694/SRR566168/SRR566168.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-10A-01D	DNA	EFO	SRS160340	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP10A-1_1pA	SRX099694	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_7.bam	SRR566168	@dbgap@:reads/SRP012006/SRS160340/SRX099694/SRR566168/SRR566168.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-10A-01D	DNA	EFO	SRS160340	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAP10A-1_1pA	SRX099694	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAP-10A-01D ING_WTSRG.CAAAAP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_7.bam	SRR566168	@dbgap@:reads/SRP012006/SRS160340/SRX099694/SRR566168/SRR566168.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-CAAAAP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAEHHM	TARGET-50-CAAAAP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAP-10A-01D	DNA	EFO	SRS160340	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-CAAAAP-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAP-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-CAAAAP-10A-01D	SRX959494	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-CAAAAP-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-CAAAAP-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAP-10A-01D run	sequencing assay	EFO	317	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-CAAAAP-10A-01D.bam	SRR1919216	@dbgap@:reads/SRP012006/SRS160340/SRX959494/SRR1919216/SRR1919216.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01D	DNA	EFO	SRS160341	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR01A-1_1pA	SRX099660	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_6.bam	SRR566154	@dbgap@:reads/SRP012006/SRS160341/SRX099660/SRR566154/SRR566154.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01D	DNA	EFO	SRS160341	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR01A-1_1pA	SRX099660	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_6.bam	SRR566154	@dbgap@:reads/SRP012006/SRS160341/SRX099660/SRR566154/SRR566154.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01D	DNA	EFO	SRS160341	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR01A-1_1pA	SRX099660	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_6.bam	SRR566154	@dbgap@:reads/SRP012006/SRS160341/SRX099660/SRR566154/SRR566154.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01D	DNA	EFO	SRS160341	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR01A-1_1pA	SRX099660	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_6.bam	SRR566154	@dbgap@:reads/SRP012006/SRS160341/SRX099660/SRR566154/SRR566154.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01D	DNA	EFO	SRS160341	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR01A-1_1pA	SRX099660	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_6.bam	SRR566154	@dbgap@:reads/SRP012006/SRS160341/SRX099660/SRR566154/SRR566154.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01D	DNA	EFO	SRS160341	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR01A-1_1pA	SRX099660	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-01A-01D ING_WTSRG.CAAAAR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_6.bam	SRR566154	@dbgap@:reads/SRP012006/SRS160341/SRX099660/SRR566154/SRR566154.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-01A-01D	DNA	EFO	SRS160341	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-CAAAAR-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAR-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-CAAAAR-01A-01D	SRX959498	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-CAAAAR-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-CAAAAR-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAR-01A-01D run	sequencing assay	EFO	231	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-CAAAAR-01A-01D.bam	SRR1919220	@dbgap@:reads/SRP012006/SRS160341/SRX959498/SRR1919220/SRR1919220.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-10A-01D	DNA	EFO	SRS160342	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR10A-1_1pA	SRX099661	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110210_SN580_0049_B81JRVABXX_7.bam	SRR566155	@dbgap@:reads/SRP012006/SRS160342/SRX099661/SRR566155/SRR566155.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-10A-01D	DNA	EFO	SRS160342	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR10A-1_1pA	SRX099661	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110210_SN580_0049_B81JRVABXX_7.bam	SRR566155	@dbgap@:reads/SRP012006/SRS160342/SRX099661/SRR566155/SRR566155.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-10A-01D	DNA	EFO	SRS160342	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR10A-1_1pA	SRX099661	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110210_SN580_0049_B81JRVABXX_7.bam	SRR566155	@dbgap@:reads/SRP012006/SRS160342/SRX099661/SRR566155/SRR566155.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-10A-01D	DNA	EFO	SRS160342	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR10A-1_1pA	SRX099661	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110210_SN580_0049_B81JRVABXX_7.bam	SRR566155	@dbgap@:reads/SRP012006/SRS160342/SRX099661/SRR566155/SRR566155.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-10A-01D	DNA	EFO	SRS160342	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR10A-1_1pA	SRX099661	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-10A-01D ING_WTSRG.CAAAAR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110210_SN580_0049_B81JRVABXX_7.bam	SRR566155	@dbgap@:reads/SRP012006/SRS160342/SRX099661/SRR566155/SRR566155.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-10A-01D	DNA	EFO	SRS160342	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-CAAAAR-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAR-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-CAAAAR-10A-01D	SRX959497	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-CAAAAR-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-CAAAAR-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-CAAAAR-10A-01D run	sequencing assay	EFO	232	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-CAAAAR-10A-01D.bam	SRR1919219	@dbgap@:reads/SRP012006/SRS160342/SRX959497/SRR1919219/SRR1919219.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-11A-01D	DNA	EFO	SRS160343	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-11A-01D ING_WTSRG.CAAAAR11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR11A-1_1pA	SRX099662	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-11A-01D ING_WTSRG.CAAAAR11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110210_SN580_0049_B81JRVABXX_8.bam	SRR566156	@dbgap@:reads/SRP012006/SRS160343/SRX099662/SRR566156/SRR566156.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-CAAAAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery	TARGET-50-PAJNPS	TARGET-50-CAAAAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-CAAAAR-11A-01D	DNA	EFO	SRS160343	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-CAAAAR-11A-01D ING_WTSRG.CAAAAR11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.CAAAAR11A-1_1pA	SRX099662	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-CAAAAR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-CAAAAR-11A-01D ING_WTSRG.CAAAAR11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110210_SN580_0049_B81JRVABXX_8.bam	SRR566156	@dbgap@:reads/SRP012006/SRS160343/SRX099662/SRR566156/SRR566156.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01D	DNA	EFO	SRS160344	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY01A-1_1pA	SRX099663	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_7.bam	SRR566157	@dbgap@:reads/SRP012006/SRS160344/SRX099663/SRR566157/SRR566157.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01D	DNA	EFO	SRS160344	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY01A-1_1pA	SRX099663	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_7.bam	SRR566157	@dbgap@:reads/SRP012006/SRS160344/SRX099663/SRR566157/SRR566157.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01D	DNA	EFO	SRS160344	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY01A-1_1pA	SRX099663	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_7.bam	SRR566157	@dbgap@:reads/SRP012006/SRS160344/SRX099663/SRR566157/SRR566157.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01D	DNA	EFO	SRS160344	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY01A-1_1pA	SRX099663	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_7.bam	SRR566157	@dbgap@:reads/SRP012006/SRS160344/SRX099663/SRR566157/SRR566157.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01D	DNA	EFO	SRS160344	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY01A-1_1pA	SRX099663	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_7.bam	SRR566157	@dbgap@:reads/SRP012006/SRS160344/SRX099663/SRR566157/SRR566157.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01D	DNA	EFO	SRS160344	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY01A-1_1pA	SRX099663	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-01A-01D ING_WTSRG.PADXAY01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_7.bam	SRR566157	@dbgap@:reads/SRP012006/SRS160344/SRX099663/SRR566157/SRR566157.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-01A-01D	DNA	EFO	SRS160344	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PADXAY-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PADXAY-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PADXAY-01A-01D	SRX959501	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PADXAY-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PADXAY-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PADXAY-01A-01D run	sequencing assay	EFO	136	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PADXAY-01A-01D.bam	SRR1919222	@dbgap@:reads/SRP012006/SRS160344/SRX959501/SRR1919222/SRR1919222.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-10A-01D	DNA	EFO	SRS160345	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY10A-1_1pA	SRX099664	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_8.bam	SRR566165	@dbgap@:reads/SRP012006/SRS160345/SRX099664/SRR566165/SRR566165.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-10A-01D	DNA	EFO	SRS160345	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY10A-1_1pA	SRX099664	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_8.bam	SRR566165	@dbgap@:reads/SRP012006/SRS160345/SRX099664/SRR566165/SRR566165.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-10A-01D	DNA	EFO	SRS160345	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY10A-1_1pA	SRX099664	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_8.bam	SRR566165	@dbgap@:reads/SRP012006/SRS160345/SRX099664/SRR566165/SRR566165.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-10A-01D	DNA	EFO	SRS160345	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY10A-1_1pA	SRX099664	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_8.bam	SRR566165	@dbgap@:reads/SRP012006/SRS160345/SRX099664/SRR566165/SRR566165.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-10A-01D	DNA	EFO	SRS160345	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY10A-1_1pA	SRX099664	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_8.bam	SRR566165	@dbgap@:reads/SRP012006/SRS160345/SRX099664/SRR566165/SRR566165.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-10A-01D	DNA	EFO	SRS160345	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADXAY10A-1_1pA	SRX099664	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADXAY-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADXAY-10A-01D ING_WTSRG.PADXAY10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110316_SN166_0173_B702D8ABXX_8.bam	SRR566165	@dbgap@:reads/SRP012006/SRS160345/SRX099664/SRR566165/SRR566165.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PADXAY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADXAY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADXAY-10A-01D	DNA	EFO	SRS160345	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PADXAY-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PADXAY-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PADXAY-10A-01D	SRX959500	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PADXAY-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PADXAY-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PADXAY-10A-01D run	sequencing assay	EFO	139	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PADXAY-10A-01D.bam	SRR1919221	@dbgap@:reads/SRP012006/SRS160345/SRX959500/SRR1919221/SRR1919221.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01D	DNA	EFO	SRS160346	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB01A-1_1pA	SRX099673	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_3.bam	SRR566162	@dbgap@:reads/SRP012006/SRS160346/SRX099673/SRR566162/SRR566162.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01D	DNA	EFO	SRS160346	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB01A-1_1pA	SRX099673	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_3.bam	SRR566162	@dbgap@:reads/SRP012006/SRS160346/SRX099673/SRR566162/SRR566162.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01D	DNA	EFO	SRS160346	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB01A-1_1pA	SRX099673	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_3.bam	SRR566162	@dbgap@:reads/SRP012006/SRS160346/SRX099673/SRR566162/SRR566162.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01D	DNA	EFO	SRS160346	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB01A-1_1pA	SRX099673	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_3.bam	SRR566162	@dbgap@:reads/SRP012006/SRS160346/SRX099673/SRR566162/SRR566162.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01D	DNA	EFO	SRS160346	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB01A-1_1pA	SRX099673	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_3.bam	SRR566162	@dbgap@:reads/SRP012006/SRS160346/SRX099673/SRR566162/SRR566162.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-01A-01D	DNA	EFO	SRS160346	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB01A-1_1pA	SRX099673	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-01A-01D ING_WTSRG.PADZUB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_3.bam	SRR566162	@dbgap@:reads/SRP012006/SRS160346/SRX099673/SRR566162/SRR566162.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-10A-01D	DNA	EFO	SRS160347	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB10A-1_1pA	SRX099650	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_4.bam	SRR566166	@dbgap@:reads/SRP012006/SRS160347/SRX099650/SRR566166/SRR566166.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-10A-01D	DNA	EFO	SRS160347	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB10A-1_1pA	SRX099650	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_4.bam	SRR566166	@dbgap@:reads/SRP012006/SRS160347/SRX099650/SRR566166/SRR566166.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-10A-01D	DNA	EFO	SRS160347	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB10A-1_1pA	SRX099650	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_4.bam	SRR566166	@dbgap@:reads/SRP012006/SRS160347/SRX099650/SRR566166/SRR566166.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-10A-01D	DNA	EFO	SRS160347	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB10A-1_1pA	SRX099650	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_4.bam	SRR566166	@dbgap@:reads/SRP012006/SRS160347/SRX099650/SRR566166/SRR566166.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-10A-01D	DNA	EFO	SRS160347	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB10A-1_1pA	SRX099650	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_4.bam	SRR566166	@dbgap@:reads/SRP012006/SRS160347/SRX099650/SRR566166/SRR566166.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PADZUB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PADZUB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PADZUB-10A-01D	DNA	EFO	SRS160347	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PADZUB10A-1_1pA	SRX099650	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PADZUB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PADZUB-10A-01D ING_WTSRG.PADZUB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0319_A81A0TABXX_4.bam	SRR566166	@dbgap@:reads/SRP012006/SRS160347/SRX099650/SRR566166/SRR566166.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01D	DNA	EFO	SRS190115	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAEAFB-01A-01D PPTPWT.TARGET-50-PAEAFB-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	21.6	PPTPWT.TARGET-50-PAEAFB-01A-01D-1_1AMP	SRX398128	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAEAFB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAEAFB-01A-01D PPTPWT.TARGET-50-PAEAFB-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID03.bam	SRR1057337	@dbgap@:reads/SRP012006/SRS190115/SRX398128/SRR1057337/SRR1057337.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01D	DNA	EFO	SRS190115	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAEAFB-01A-01D PPTPWT.TARGET-50-PAEAFB-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	21.6	PPTPWT.TARGET-50-PAEAFB-01A-01D-1_1AMP	SRX398128	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAEAFB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAEAFB-01A-01D PPTPWT.TARGET-50-PAEAFB-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID03.bam	SRR1057337	@dbgap@:reads/SRP012006/SRS190115/SRX398128/SRR1057337/SRR1057337.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01D	DNA	EFO	SRS190115	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAEAFB-01A-01D PPTPWT.TARGET-50-PAEAFB-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	21.6	PPTPWT.TARGET-50-PAEAFB-01A-01D-1_1AMP	SRX398128	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAEAFB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAEAFB-01A-01D PPTPWT.TARGET-50-PAEAFB-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID03.bam	SRR1057337	@dbgap@:reads/SRP012006/SRS190115/SRX398128/SRR1057337/SRR1057337.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-01A-01D	DNA	EFO	SRS190115	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAEAFB-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAEAFB-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAEAFB-01A-01D	SRX959503	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAEAFB-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAEAFB-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAEAFB-01A-01D run	sequencing assay	EFO	124	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAEAFB-01A-01D.bam	SRR1919224	@dbgap@:reads/SRP012006/SRS190115/SRX959503/SRR1919224/SRR1919224.sra	2							
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-10A-01D	DNA	EFO	SRS190116	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAEAFB-10A-01D PPTPWT.TARGET-50-PAEAFB-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAEAFB-10A-01D-1_1AMP	SRX398129	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAEAFB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAEAFB-10A-01D PPTPWT.TARGET-50-PAEAFB-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID04.bam	SRR1057338	@dbgap@:reads/SRP012006/SRS190116/SRX398129/SRR1057338/SRR1057338.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-10A-01D	DNA	EFO	SRS190116	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAEAFB-10A-01D PPTPWT.TARGET-50-PAEAFB-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAEAFB-10A-01D-1_1AMP	SRX398129	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAEAFB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAEAFB-10A-01D PPTPWT.TARGET-50-PAEAFB-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID04.bam	SRR1057338	@dbgap@:reads/SRP012006/SRS190116/SRX398129/SRR1057338/SRR1057338.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-10A-01D	DNA	EFO	SRS190116	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAEAFB-10A-01D PPTPWT.TARGET-50-PAEAFB-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAEAFB-10A-01D-1_1AMP	SRX398129	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAEAFB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAEAFB-10A-01D PPTPWT.TARGET-50-PAEAFB-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_8_ID04.bam	SRR1057338	@dbgap@:reads/SRP012006/SRS190116/SRX398129/SRR1057338/SRR1057338.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAEAFB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAEAFB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAEAFB-10A-01D	DNA	EFO	SRS190116	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAEAFB-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAEAFB-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAEAFB-10A-01D	SRX959519	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAEAFB-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAEAFB-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAEAFB-10A-01D run	sequencing assay	EFO	123	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAEAFB-10A-01D.bam	SRR1919239	@dbgap@:reads/SRP012006/SRS190116/SRX959519/SRR1919239/SRR1919239.sra	2							
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01D	DNA	EFO	SRS190121	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKC-01A-01D PPTPWT.TARGET-50-PAJLKC-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAJLKC-01A-01D-1_1AMP	SRX398130	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKC-01A-01D PPTPWT.TARGET-50-PAJLKC-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID05.bam	SRR1057339	@dbgap@:reads/SRP012006/SRS190121/SRX398130/SRR1057339/SRR1057339.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01D	DNA	EFO	SRS190121	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKC-01A-01D PPTPWT.TARGET-50-PAJLKC-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAJLKC-01A-01D-1_1AMP	SRX398130	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKC-01A-01D PPTPWT.TARGET-50-PAJLKC-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID05.bam	SRR1057339	@dbgap@:reads/SRP012006/SRS190121/SRX398130/SRR1057339/SRR1057339.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01D	DNA	EFO	SRS190121	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKC-01A-01D PPTPWT.TARGET-50-PAJLKC-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAJLKC-01A-01D-1_1AMP	SRX398130	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKC-01A-01D PPTPWT.TARGET-50-PAJLKC-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID05.bam	SRR1057339	@dbgap@:reads/SRP012006/SRS190121/SRX398130/SRR1057339/SRR1057339.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-01A-01D	DNA	EFO	SRS190121	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJLKC-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLKC-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJLKC-01A-01D	SRX959504	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJLKC-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJLKC-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLKC-01A-01D run	sequencing assay	EFO	185	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJLKC-01A-01D.bam	SRR1919225	@dbgap@:reads/SRP012006/SRS190121/SRX959504/SRR1919225/SRR1919225.sra	2							
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-10A-01D	DNA	EFO	SRS190122	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKC-10A-01D PPTPWT.TARGET-50-PAJLKC-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAJLKC-10A-01D-1_1AMP	SRX398131	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKC-10A-01D PPTPWT.TARGET-50-PAJLKC-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID06.bam	SRR1057340	@dbgap@:reads/SRP012006/SRS190122/SRX398131/SRR1057340/SRR1057340.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-10A-01D	DNA	EFO	SRS190122	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKC-10A-01D PPTPWT.TARGET-50-PAJLKC-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAJLKC-10A-01D-1_1AMP	SRX398131	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKC-10A-01D PPTPWT.TARGET-50-PAJLKC-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID06.bam	SRR1057340	@dbgap@:reads/SRP012006/SRS190122/SRX398131/SRR1057340/SRR1057340.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-10A-01D	DNA	EFO	SRS190122	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKC-10A-01D PPTPWT.TARGET-50-PAJLKC-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAJLKC-10A-01D-1_1AMP	SRX398131	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKC-10A-01D PPTPWT.TARGET-50-PAJLKC-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID06.bam	SRR1057340	@dbgap@:reads/SRP012006/SRS190122/SRX398131/SRR1057340/SRR1057340.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJLKC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKC-10A-01D	DNA	EFO	SRS190122	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJLKC-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLKC-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJLKC-10A-01D	SRX959505	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJLKC-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJLKC-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLKC-10A-01D run	sequencing assay	EFO	175	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJLKC-10A-01D.bam	SRR1919226	@dbgap@:reads/SRP012006/SRS190122/SRX959505/SRR1919226/SRR1919226.sra	2							
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKR-01A-01D PPTPWT.TARGET-50-PAJLKR-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	21.4	PPTPWT.TARGET-50-PAJLKR-01A-01D-1_1AMP	SRX398132	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKR-01A-01D PPTPWT.TARGET-50-PAJLKR-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID07.bam	SRR1057341	@dbgap@:reads/SRP012006/SRS190123/SRX398132/SRR1057341/SRR1057341.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKR-01A-01D PPTPWT.TARGET-50-PAJLKR-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	21.4	PPTPWT.TARGET-50-PAJLKR-01A-01D-1_1AMP	SRX398132	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKR-01A-01D PPTPWT.TARGET-50-PAJLKR-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID07.bam	SRR1057341	@dbgap@:reads/SRP012006/SRS190123/SRX398132/SRR1057341/SRR1057341.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKR-01A-01D PPTPWT.TARGET-50-PAJLKR-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	21.4	PPTPWT.TARGET-50-PAJLKR-01A-01D-1_1AMP	SRX398132	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKR-01A-01D PPTPWT.TARGET-50-PAJLKR-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID07.bam	SRR1057341	@dbgap@:reads/SRP012006/SRS190123/SRX398132/SRR1057341/SRR1057341.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-01A-01D	DNA	EFO	SRS190123	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJLKR-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLKR-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJLKR-01A-01D	SRX959506	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJLKR-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJLKR-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLKR-01A-01D run	sequencing assay	EFO	207	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJLKR-01A-01D.bam	SRR1919227	@dbgap@:reads/SRP012006/SRS190123/SRX959506/SRR1919227/SRR1919227.sra	2	GRCh37						
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKR-11A-01D PPTPWT.TARGET-50-PAJLKR-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	22.2	PPTPWT.TARGET-50-PAJLKR-11A-01D-1_1AMP	SRX398133	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKR-11A-01D PPTPWT.TARGET-50-PAJLKR-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID08.bam	SRR1057342	@dbgap@:reads/SRP012006/SRS190124/SRX398133/SRR1057342/SRR1057342.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKR-11A-01D PPTPWT.TARGET-50-PAJLKR-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	22.2	PPTPWT.TARGET-50-PAJLKR-11A-01D-1_1AMP	SRX398133	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKR-11A-01D PPTPWT.TARGET-50-PAJLKR-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID08.bam	SRR1057342	@dbgap@:reads/SRP012006/SRS190124/SRX398133/SRR1057342/SRR1057342.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLKR-11A-01D PPTPWT.TARGET-50-PAJLKR-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	222	22.2	PPTPWT.TARGET-50-PAJLKR-11A-01D-1_1AMP	SRX398133	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLKR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLKR-11A-01D PPTPWT.TARGET-50-PAJLKR-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN805_0391_AC294VACXX_4_ID08.bam	SRR1057342	@dbgap@:reads/SRP012006/SRS190124/SRX398133/SRR1057342/SRR1057342.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJLKR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLKR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLKR-11A-01D	DNA	EFO	SRS190124	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJLKR-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLKR-11A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJLKR-11A-01D	SRX959507	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJLKR-11A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJLKR-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLKR-11A-01D run	sequencing assay	EFO	213	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJLKR-11A-01D.bam	SRR1919228	@dbgap@:reads/SRP012006/SRS190124/SRX959507/SRR1919228/SRR1919228.sra	2	GRCh37						
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLNJ-01A-01D PPTPWT.TARGET-50-PAJLNJ-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	21.8	PPTPWT.TARGET-50-PAJLNJ-01A-01D-1_1AMP	SRX398134	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLNJ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLNJ-01A-01D PPTPWT.TARGET-50-PAJLNJ-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID09.bam	SRR1057343	@dbgap@:reads/SRP012006/SRS190127/SRX398134/SRR1057343/SRR1057343.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLNJ-01A-01D PPTPWT.TARGET-50-PAJLNJ-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	21.8	PPTPWT.TARGET-50-PAJLNJ-01A-01D-1_1AMP	SRX398134	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLNJ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLNJ-01A-01D PPTPWT.TARGET-50-PAJLNJ-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID09.bam	SRR1057343	@dbgap@:reads/SRP012006/SRS190127/SRX398134/SRR1057343/SRR1057343.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLNJ-01A-01D PPTPWT.TARGET-50-PAJLNJ-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	218	21.8	PPTPWT.TARGET-50-PAJLNJ-01A-01D-1_1AMP	SRX398134	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLNJ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLNJ-01A-01D PPTPWT.TARGET-50-PAJLNJ-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID09.bam	SRR1057343	@dbgap@:reads/SRP012006/SRS190127/SRX398134/SRR1057343/SRR1057343.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-01A-01D	DNA	EFO	SRS190127	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJLNJ-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLNJ-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJLNJ-01A-01D	SRX959508	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJLNJ-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJLNJ-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLNJ-01A-01D run	sequencing assay	EFO	174	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJLNJ-01A-01D.bam	SRR1919229	@dbgap@:reads/SRP012006/SRS190127/SRX959508/SRR1919229/SRR1919229.sra	2							
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLNJ-11A-01D PPTPWT.TARGET-50-PAJLNJ-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAJLNJ-11A-01D-1_1AMP	SRX398135	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLNJ-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLNJ-11A-01D PPTPWT.TARGET-50-PAJLNJ-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID10.bam	SRR1057344	@dbgap@:reads/SRP012006/SRS190128/SRX398135/SRR1057344/SRR1057344.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLNJ-11A-01D PPTPWT.TARGET-50-PAJLNJ-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAJLNJ-11A-01D-1_1AMP	SRX398135	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLNJ-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLNJ-11A-01D PPTPWT.TARGET-50-PAJLNJ-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID10.bam	SRR1057344	@dbgap@:reads/SRP012006/SRS190128/SRX398135/SRR1057344/SRR1057344.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLNJ-11A-01D PPTPWT.TARGET-50-PAJLNJ-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAJLNJ-11A-01D-1_1AMP	SRX398135	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLNJ-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLNJ-11A-01D PPTPWT.TARGET-50-PAJLNJ-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID10.bam	SRR1057344	@dbgap@:reads/SRP012006/SRS190128/SRX398135/SRR1057344/SRR1057344.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJLNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLNJ-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLNJ-11A-01D	DNA	EFO	SRS190128	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJLNJ-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLNJ-11A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJLNJ-11A-01D	SRX959509	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJLNJ-11A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJLNJ-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLNJ-11A-01D run	sequencing assay	EFO	166	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJLNJ-11A-01D.bam	SRR1919230	@dbgap@:reads/SRP012006/SRS190128/SRX959509/SRR1919230/SRR1919230.sra	2							
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01D	DNA	EFO	SRS190135	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLWT-01A-01D PPTPWT.TARGET-50-PAJLWT-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	21.4	PPTPWT.TARGET-50-PAJLWT-01A-01D-1_1AMP	SRX398136	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLWT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLWT-01A-01D PPTPWT.TARGET-50-PAJLWT-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID11.bam	SRR1057345	@dbgap@:reads/SRP012006/SRS190135/SRX398136/SRR1057345/SRR1057345.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01D	DNA	EFO	SRS190135	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLWT-01A-01D PPTPWT.TARGET-50-PAJLWT-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	21.4	PPTPWT.TARGET-50-PAJLWT-01A-01D-1_1AMP	SRX398136	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLWT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLWT-01A-01D PPTPWT.TARGET-50-PAJLWT-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID11.bam	SRR1057345	@dbgap@:reads/SRP012006/SRS190135/SRX398136/SRR1057345/SRR1057345.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01D	DNA	EFO	SRS190135	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLWT-01A-01D PPTPWT.TARGET-50-PAJLWT-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	21.4	PPTPWT.TARGET-50-PAJLWT-01A-01D-1_1AMP	SRX398136	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLWT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLWT-01A-01D PPTPWT.TARGET-50-PAJLWT-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID11.bam	SRR1057345	@dbgap@:reads/SRP012006/SRS190135/SRX398136/SRR1057345/SRR1057345.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-01A-01D	DNA	EFO	SRS190135	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJLWT-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLWT-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJLWT-01A-01D	SRX959510	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJLWT-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJLWT-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLWT-01A-01D run	sequencing assay	EFO	191	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJLWT-01A-01D.bam	SRR1919231	@dbgap@:reads/SRP012006/SRS190135/SRX959510/SRR1919231/SRR1919231.sra	2	GRCh37						
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-10A-01D	DNA	EFO	SRS190136	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLWT-10A-01D PPTPWT.TARGET-50-PAJLWT-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	20.9	PPTPWT.TARGET-50-PAJLWT-10A-01D-1_1AMP	SRX398137	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLWT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLWT-10A-01D PPTPWT.TARGET-50-PAJLWT-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID12.bam	SRR1057346	@dbgap@:reads/SRP012006/SRS190136/SRX398137/SRR1057346/SRR1057346.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-10A-01D	DNA	EFO	SRS190136	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLWT-10A-01D PPTPWT.TARGET-50-PAJLWT-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	20.9	PPTPWT.TARGET-50-PAJLWT-10A-01D-1_1AMP	SRX398137	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLWT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLWT-10A-01D PPTPWT.TARGET-50-PAJLWT-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID12.bam	SRR1057346	@dbgap@:reads/SRP012006/SRS190136/SRX398137/SRR1057346/SRR1057346.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-10A-01D	DNA	EFO	SRS190136	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJLWT-10A-01D PPTPWT.TARGET-50-PAJLWT-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	20.9	PPTPWT.TARGET-50-PAJLWT-10A-01D-1_1AMP	SRX398137	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJLWT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJLWT-10A-01D PPTPWT.TARGET-50-PAJLWT-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_6_ID12.bam	SRR1057346	@dbgap@:reads/SRP012006/SRS190136/SRX398137/SRR1057346/SRR1057346.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJLWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJLWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJLWT-10A-01D	DNA	EFO	SRS190136	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJLWT-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLWT-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJLWT-10A-01D	SRX959511	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJLWT-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJLWT-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJLWT-10A-01D run	sequencing assay	EFO	195	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJLWT-10A-01D.bam	SRR1919232	@dbgap@:reads/SRP012006/SRS190136/SRX959511/SRR1919232/SRR1919232.sra	2	GRCh37						
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMEP-01A-01D PPTPWT.TARGET-50-PAJMEP-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAJMEP-01A-01D-1_1AMP	SRX398138	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMEP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMEP-01A-01D PPTPWT.TARGET-50-PAJMEP-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID01.bam	SRR1057347	@dbgap@:reads/SRP012006/SRS190139/SRX398138/SRR1057347/SRR1057347.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMEP-01A-01D PPTPWT.TARGET-50-PAJMEP-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAJMEP-01A-01D-1_1AMP	SRX398138	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMEP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMEP-01A-01D PPTPWT.TARGET-50-PAJMEP-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID01.bam	SRR1057347	@dbgap@:reads/SRP012006/SRS190139/SRX398138/SRR1057347/SRR1057347.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMEP-01A-01D PPTPWT.TARGET-50-PAJMEP-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAJMEP-01A-01D-1_1AMP	SRX398138	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMEP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMEP-01A-01D PPTPWT.TARGET-50-PAJMEP-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID01.bam	SRR1057347	@dbgap@:reads/SRP012006/SRS190139/SRX398138/SRR1057347/SRR1057347.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-01A-01D	DNA	EFO	SRS190139	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMEP-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMEP-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMEP-01A-01D	SRX959512	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMEP-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMEP-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMEP-01A-01D run	sequencing assay	EFO	140	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMEP-01A-01D.bam	SRR1919233	@dbgap@:reads/SRP012006/SRS190139/SRX959512/SRR1919233/SRR1919233.sra	2							
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMEP-11A-01D PPTPWT.TARGET-50-PAJMEP-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	21.6	PPTPWT.TARGET-50-PAJMEP-11A-01D-1_1AMP	SRX398139	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMEP-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMEP-11A-01D PPTPWT.TARGET-50-PAJMEP-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID02.bam	SRR1057348	@dbgap@:reads/SRP012006/SRS190140/SRX398139/SRR1057348/SRR1057348.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMEP-11A-01D PPTPWT.TARGET-50-PAJMEP-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	21.6	PPTPWT.TARGET-50-PAJMEP-11A-01D-1_1AMP	SRX398139	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMEP-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMEP-11A-01D PPTPWT.TARGET-50-PAJMEP-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID02.bam	SRR1057348	@dbgap@:reads/SRP012006/SRS190140/SRX398139/SRR1057348/SRR1057348.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMEP-11A-01D PPTPWT.TARGET-50-PAJMEP-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	21.6	PPTPWT.TARGET-50-PAJMEP-11A-01D-1_1AMP	SRX398139	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMEP-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMEP-11A-01D PPTPWT.TARGET-50-PAJMEP-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID02.bam	SRR1057348	@dbgap@:reads/SRP012006/SRS190140/SRX398139/SRR1057348/SRR1057348.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMEP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMEP-11A-01D	DNA	EFO	SRS190140	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMEP-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMEP-11A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMEP-11A-01D	SRX959513	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMEP-11A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMEP-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMEP-11A-01D run	sequencing assay	EFO	139	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMEP-11A-01D.bam	SRR1919234	@dbgap@:reads/SRP012006/SRS190140/SRX959513/SRR1919234/SRR1919234.sra	2							
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01D	DNA	EFO	SRS190143	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMIZ-01A-01D PPTPWT.TARGET-50-PAJMIZ-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAJMIZ-01A-01D-1_1AMP	SRX398140	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMIZ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMIZ-01A-01D PPTPWT.TARGET-50-PAJMIZ-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID03.bam	SRR1057349	@dbgap@:reads/SRP012006/SRS190143/SRX398140/SRR1057349/SRR1057349.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01D	DNA	EFO	SRS190143	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMIZ-01A-01D PPTPWT.TARGET-50-PAJMIZ-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAJMIZ-01A-01D-1_1AMP	SRX398140	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMIZ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMIZ-01A-01D PPTPWT.TARGET-50-PAJMIZ-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID03.bam	SRR1057349	@dbgap@:reads/SRP012006/SRS190143/SRX398140/SRR1057349/SRR1057349.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01D	DNA	EFO	SRS190143	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMIZ-01A-01D PPTPWT.TARGET-50-PAJMIZ-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAJMIZ-01A-01D-1_1AMP	SRX398140	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMIZ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMIZ-01A-01D PPTPWT.TARGET-50-PAJMIZ-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID03.bam	SRR1057349	@dbgap@:reads/SRP012006/SRS190143/SRX398140/SRR1057349/SRR1057349.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-01A-01D	DNA	EFO	SRS190143	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMIZ-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMIZ-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMIZ-01A-01D	SRX959523	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMIZ-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMIZ-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMIZ-01A-01D run	sequencing assay	EFO	220	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMIZ-01A-01D.bam	SRR1919243	@dbgap@:reads/SRP012006/SRS190143/SRX959523/SRR1919243/SRR1919243.sra	2							
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-10A-01D	DNA	EFO	SRS190144	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMIZ-10A-01D PPTPWT.TARGET-50-PAJMIZ-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	20.8	PPTPWT.TARGET-50-PAJMIZ-10A-01D-1_1AMP	SRX398141	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMIZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMIZ-10A-01D PPTPWT.TARGET-50-PAJMIZ-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID04.bam	SRR1057350	@dbgap@:reads/SRP012006/SRS190144/SRX398141/SRR1057350/SRR1057350.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-10A-01D	DNA	EFO	SRS190144	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMIZ-10A-01D PPTPWT.TARGET-50-PAJMIZ-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	20.8	PPTPWT.TARGET-50-PAJMIZ-10A-01D-1_1AMP	SRX398141	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMIZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMIZ-10A-01D PPTPWT.TARGET-50-PAJMIZ-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID04.bam	SRR1057350	@dbgap@:reads/SRP012006/SRS190144/SRX398141/SRR1057350/SRR1057350.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-10A-01D	DNA	EFO	SRS190144	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMIZ-10A-01D PPTPWT.TARGET-50-PAJMIZ-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	20.8	PPTPWT.TARGET-50-PAJMIZ-10A-01D-1_1AMP	SRX398141	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJMIZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMIZ-10A-01D PPTPWT.TARGET-50-PAJMIZ-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130818_SN142_0785_AC2987ACXX_6_ID04.bam	SRR1057350	@dbgap@:reads/SRP012006/SRS190144/SRX398141/SRR1057350/SRR1057350.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMIZ-10A-01D	DNA	EFO	SRS190144	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMIZ-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMIZ-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMIZ-10A-01D	SRX959514	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMIZ-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMIZ-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMIZ-10A-01D run	sequencing assay	EFO	218	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMIZ-10A-01D.bam	SRR1919235	@dbgap@:reads/SRP012006/SRS190144/SRX959514/SRR1919235/SRR1919235.sra	2							
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01D	DNA	EFO	SRS160348	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT01A-1_1pA	SRX099674	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_6.bam	SRR566163	@dbgap@:reads/SRP012006/SRS160348/SRX099674/SRR566163/SRR566163.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01D	DNA	EFO	SRS160348	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT01A-1_1pA	SRX099674	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_6.bam	SRR566163	@dbgap@:reads/SRP012006/SRS160348/SRX099674/SRR566163/SRR566163.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01D	DNA	EFO	SRS160348	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT01A-1_1pA	SRX099674	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_6.bam	SRR566163	@dbgap@:reads/SRP012006/SRS160348/SRX099674/SRR566163/SRR566163.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01D	DNA	EFO	SRS160348	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT01A-1_1pA	SRX099674	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_6.bam	SRR566163	@dbgap@:reads/SRP012006/SRS160348/SRX099674/SRR566163/SRR566163.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01D	DNA	EFO	SRS160348	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT01A-1_1pA	SRX099674	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_6.bam	SRR566163	@dbgap@:reads/SRP012006/SRS160348/SRX099674/SRR566163/SRR566163.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01D	DNA	EFO	SRS160348	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT01A-1_1pA	SRX099674	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-01A-01D ING_WTSRG.PAJMJT01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_6.bam	SRR566163	@dbgap@:reads/SRP012006/SRS160348/SRX099674/SRR566163/SRR566163.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-01A-01D	DNA	EFO	SRS160348	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMJT-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMJT-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMJT-01A-01D	SRX959515	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMJT-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMJT-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMJT-01A-01D run	sequencing assay	EFO	229	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMJT-01A-01D.bam	SRR1919236	@dbgap@:reads/SRP012006/SRS160348/SRX959515/SRR1919236/SRR1919236.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-10A-01D	DNA	EFO	SRS160349	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT10A-1_1pA	SRX099651	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_7.bam	SRR566167	@dbgap@:reads/SRP012006/SRS160349/SRX099651/SRR566167/SRR566167.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-10A-01D	DNA	EFO	SRS160349	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT10A-1_1pA	SRX099651	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_7.bam	SRR566167	@dbgap@:reads/SRP012006/SRS160349/SRX099651/SRR566167/SRR566167.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-10A-01D	DNA	EFO	SRS160349	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT10A-1_1pA	SRX099651	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_7.bam	SRR566167	@dbgap@:reads/SRP012006/SRS160349/SRX099651/SRR566167/SRR566167.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-10A-01D	DNA	EFO	SRS160349	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT10A-1_1pA	SRX099651	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_7.bam	SRR566167	@dbgap@:reads/SRP012006/SRS160349/SRX099651/SRR566167/SRR566167.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-10A-01D	DNA	EFO	SRS160349	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT10A-1_1pA	SRX099651	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_7.bam	SRR566167	@dbgap@:reads/SRP012006/SRS160349/SRX099651/SRR566167/SRR566167.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-10A-01D	DNA	EFO	SRS160349	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMJT10A-1_1pA	SRX099651	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMJT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMJT-10A-01D ING_WTSRG.PAJMJT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_7.bam	SRR566167	@dbgap@:reads/SRP012006/SRS160349/SRX099651/SRR566167/SRR566167.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMJT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMJT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMJT-10A-01D	DNA	EFO	SRS160349	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMJT-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMJT-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMJT-10A-01D	SRX959516	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMJT-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMJT-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMJT-10A-01D run	sequencing assay	EFO	230	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMJT-10A-01D.bam	SRR1919237	@dbgap@:reads/SRP012006/SRS160349/SRX959516/SRR1919237/SRR1919237.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01D	DNA	EFO	SRS160350	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMKN-01A-01D ING_WTSRG.PAJMKN01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMKN01A-1_1pA	SRX099649	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMKN-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMKN-01A-01D ING_WTSRG.PAJMKN01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_8.bam	SRR566158	@dbgap@:reads/SRP012006/SRS160350/SRX099649/SRR566158/SRR566158.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01D	DNA	EFO	SRS160350	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMKN-01A-01D ING_WTSRG.PAJMKN01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMKN01A-1_1pA	SRX099649	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMKN-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMKN-01A-01D ING_WTSRG.PAJMKN01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_8.bam	SRR566158	@dbgap@:reads/SRP012006/SRS160350/SRX099649/SRR566158/SRR566158.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01D	DNA	EFO	SRS160350	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMKN-01A-01D ING_WTSRG.PAJMKN01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMKN01A-1_1pA	SRX099649	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMKN-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMKN-01A-01D ING_WTSRG.PAJMKN01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_8.bam	SRR566158	@dbgap@:reads/SRP012006/SRS160350/SRX099649/SRR566158/SRR566158.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01D	DNA	EFO	SRS160350	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMKN-01A-01D ING_WTSRG.PAJMKN01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMKN01A-1_1pA	SRX099649	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMKN-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMKN-01A-01D ING_WTSRG.PAJMKN01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110128_SN142_0320_B81D7EABXX_8.bam	SRR566158	@dbgap@:reads/SRP012006/SRS160350/SRX099649/SRR566158/SRR566158.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-01A-01D	DNA	EFO	SRS160350	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMKN-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMKN-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMKN-01A-01D	SRX959518	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMKN-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMKN-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMKN-01A-01D run	sequencing assay	EFO	175	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMKN-01A-01D.bam	SRR1919238	@dbgap@:reads/SRP012006/SRS160350/SRX959518/SRR1919238/SRR1919238.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-10A-01D	DNA	EFO	SRS160351	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMKN-10A-01D ING_WTSRG.PAJMKN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMKN10A-1_1pA	SRX099665	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMKN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMKN-10A-01D ING_WTSRG.PAJMKN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_1.bam	SRR566160	@dbgap@:reads/SRP012006/SRS160351/SRX099665/SRR566160/SRR566160.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-10A-01D	DNA	EFO	SRS160351	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMKN-10A-01D ING_WTSRG.PAJMKN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMKN10A-1_1pA	SRX099665	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMKN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMKN-10A-01D ING_WTSRG.PAJMKN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_1.bam	SRR566160	@dbgap@:reads/SRP012006/SRS160351/SRX099665/SRR566160/SRR566160.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-10A-01D	DNA	EFO	SRS160351	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMKN-10A-01D ING_WTSRG.PAJMKN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMKN10A-1_1pA	SRX099665	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMKN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMKN-10A-01D ING_WTSRG.PAJMKN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_1.bam	SRR566160	@dbgap@:reads/SRP012006/SRS160351/SRX099665/SRR566160/SRR566160.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-10A-01D	DNA	EFO	SRS160351	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMKN-10A-01D ING_WTSRG.PAJMKN10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMKN10A-1_1pA	SRX099665	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMKN-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMKN-10A-01D ING_WTSRG.PAJMKN10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_1.bam	SRR566160	@dbgap@:reads/SRP012006/SRS160351/SRX099665/SRR566160/SRR566160.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMKN-10A-01D	DNA	EFO	SRS160351	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMKN-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMKN-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMKN-10A-01D	SRX959520	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMKN-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMKN-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMKN-10A-01D run	sequencing assay	EFO	173	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMKN-10A-01D.bam	SRR1919240	@dbgap@:reads/SRP012006/SRS160351/SRX959520/SRR1919240/SRR1919240.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01D	DNA	EFO	SRS160352	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMLZ-01A-01D ING_WTSRG.PAJMLZ01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMLZ01A-1_1pA	SRX099666	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMLZ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMLZ-01A-01D ING_WTSRG.PAJMLZ01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_2.bam	SRR566159	@dbgap@:reads/SRP012006/SRS160352/SRX099666/SRR566159/SRR566159.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01D	DNA	EFO	SRS160352	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMLZ-01A-01D ING_WTSRG.PAJMLZ01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMLZ01A-1_1pA	SRX099666	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMLZ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMLZ-01A-01D ING_WTSRG.PAJMLZ01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_2.bam	SRR566159	@dbgap@:reads/SRP012006/SRS160352/SRX099666/SRR566159/SRR566159.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01D	DNA	EFO	SRS160352	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMLZ-01A-01D ING_WTSRG.PAJMLZ01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMLZ01A-1_1pA	SRX099666	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMLZ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMLZ-01A-01D ING_WTSRG.PAJMLZ01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_2.bam	SRR566159	@dbgap@:reads/SRP012006/SRS160352/SRX099666/SRR566159/SRR566159.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-01A-01D	DNA	EFO	SRS160352	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMLZ-01A-01D ING_WTSRG.PAJMLZ01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMLZ01A-1_1pA	SRX099666	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMLZ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMLZ-01A-01D ING_WTSRG.PAJMLZ01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_2.bam	SRR566159	@dbgap@:reads/SRP012006/SRS160352/SRX099666/SRR566159/SRR566159.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-10A-01D	DNA	EFO	SRS160353	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMLZ-10A-01D IWX_WTSRG.PAJMLZ10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJMLZ10A-3_1pA	SRX147052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMLZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMLZ-10A-01D IWX_WTSRG.PAJMLZ10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID07_1.bam	SRR567927	@dbgap@:reads/SRP012006/SRS160353/SRX147052/SRR567927/SRR567927.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-10A-01D	DNA	EFO	SRS160353	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMLZ-10A-01D IWX_WTSRG.PAJMLZ10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJMLZ10A-3_1pA	SRX147052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMLZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMLZ-10A-01D IWX_WTSRG.PAJMLZ10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID07_1.bam	SRR567927	@dbgap@:reads/SRP012006/SRS160353/SRX147052/SRR567927/SRR567927.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-10A-01D	DNA	EFO	SRS160353	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMLZ-10A-01D IWX_WTSRG.PAJMLZ10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJMLZ10A-3_1pA	SRX147052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMLZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMLZ-10A-01D IWX_WTSRG.PAJMLZ10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID07_1.bam	SRR567927	@dbgap@:reads/SRP012006/SRS160353/SRX147052/SRR567927/SRR567927.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMLZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMLZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMLZ-10A-01D	DNA	EFO	SRS160353	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMLZ-10A-01D IWX_WTSRG.PAJMLZ10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJMLZ10A-3_1pA	SRX147052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMLZ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMLZ-10A-01D IWX_WTSRG.PAJMLZ10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID07_1.bam	SRR567927	@dbgap@:reads/SRP012006/SRS160353/SRX147052/SRR567927/SRR567927.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01D	DNA	EFO	SRS160354	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE01A-1_1pA	SRX099667	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_4.bam	SRR566206	@dbgap@:reads/SRP012006/SRS160354/SRX099667/SRR566206/SRR566206.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01D	DNA	EFO	SRS160354	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE01A-1_1pA	SRX099667	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_4.bam	SRR566206	@dbgap@:reads/SRP012006/SRS160354/SRX099667/SRR566206/SRR566206.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01D	DNA	EFO	SRS160354	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE01A-1_1pA	SRX099667	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_4.bam	SRR566206	@dbgap@:reads/SRP012006/SRS160354/SRX099667/SRR566206/SRR566206.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01D	DNA	EFO	SRS160354	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE01A-1_1pA	SRX099667	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_4.bam	SRR566206	@dbgap@:reads/SRP012006/SRS160354/SRX099667/SRR566206/SRR566206.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01D	DNA	EFO	SRS160354	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE01A-1_1pA	SRX099667	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_4.bam	SRR566206	@dbgap@:reads/SRP012006/SRS160354/SRX099667/SRR566206/SRR566206.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01D	DNA	EFO	SRS160354	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE01A-1_1pA	SRX099667	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-01A-01D ING_WTSRG.PAJMSE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_4.bam	SRR566206	@dbgap@:reads/SRP012006/SRS160354/SRX099667/SRR566206/SRR566206.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-01A-01D	DNA	EFO	SRS160354	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMSE-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMSE-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMSE-01A-01D	SRX959521	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMSE-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMSE-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMSE-01A-01D run	sequencing assay	EFO	245	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMSE-01A-01D.bam	SRR1919241	@dbgap@:reads/SRP012006/SRS160354/SRX959521/SRR1919241/SRR1919241.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-10A-01D	DNA	EFO	SRS160355	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE10A-1_1pA	SRX099668	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_5.bam	SRR566192	@dbgap@:reads/SRP012006/SRS160355/SRX099668/SRR566192/SRR566192.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-10A-01D	DNA	EFO	SRS160355	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE10A-1_1pA	SRX099668	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_5.bam	SRR566192	@dbgap@:reads/SRP012006/SRS160355/SRX099668/SRR566192/SRR566192.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-10A-01D	DNA	EFO	SRS160355	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE10A-1_1pA	SRX099668	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_5.bam	SRR566192	@dbgap@:reads/SRP012006/SRS160355/SRX099668/SRR566192/SRR566192.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-10A-01D	DNA	EFO	SRS160355	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE10A-1_1pA	SRX099668	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_5.bam	SRR566192	@dbgap@:reads/SRP012006/SRS160355/SRX099668/SRR566192/SRR566192.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-10A-01D	DNA	EFO	SRS160355	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE10A-1_1pA	SRX099668	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_5.bam	SRR566192	@dbgap@:reads/SRP012006/SRS160355/SRX099668/SRR566192/SRR566192.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-10A-01D	DNA	EFO	SRS160355	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMSE10A-1_1pA	SRX099668	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMSE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMSE-10A-01D ING_WTSRG.PAJMSE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_5.bam	SRR566192	@dbgap@:reads/SRP012006/SRS160355/SRX099668/SRR566192/SRR566192.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMSE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMSE-10A-01D	DNA	EFO	SRS160355	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMSE-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMSE-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMSE-10A-01D	SRX959533	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMSE-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMSE-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMSE-10A-01D run	sequencing assay	EFO	257	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMSE-10A-01D.bam	SRR1919253	@dbgap@:reads/SRP012006/SRS160355/SRX959533/SRR1919253/SRR1919253.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01D	DNA	EFO	SRS160356	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC01A-1_1pA	SRX099677	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_1.bam	SRR566194	@dbgap@:reads/SRP012006/SRS160356/SRX099677/SRR566194/SRR566194.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01D	DNA	EFO	SRS160356	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC01A-1_1pA	SRX099677	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_1.bam	SRR566194	@dbgap@:reads/SRP012006/SRS160356/SRX099677/SRR566194/SRR566194.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01D	DNA	EFO	SRS160356	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC01A-1_1pA	SRX099677	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_1.bam	SRR566194	@dbgap@:reads/SRP012006/SRS160356/SRX099677/SRR566194/SRR566194.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01D	DNA	EFO	SRS160356	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC01A-1_1pA	SRX099677	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_1.bam	SRR566194	@dbgap@:reads/SRP012006/SRS160356/SRX099677/SRR566194/SRR566194.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01D	DNA	EFO	SRS160356	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC01A-1_1pA	SRX099677	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_1.bam	SRR566194	@dbgap@:reads/SRP012006/SRS160356/SRX099677/SRR566194/SRR566194.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01D	DNA	EFO	SRS160356	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC01A-1_1pA	SRX099677	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-01A-01D ING_WTSRG.PAJMVC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_1.bam	SRR566194	@dbgap@:reads/SRP012006/SRS160356/SRX099677/SRR566194/SRR566194.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-01A-01D	DNA	EFO	SRS160356	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMVC-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMVC-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMVC-01A-01D	SRX959522	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMVC-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMVC-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMVC-01A-01D run	sequencing assay	EFO	120	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMVC-01A-01D.bam	SRR1919242	@dbgap@:reads/SRP012006/SRS160356/SRX959522/SRR1919242/SRR1919242.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-10A-01D	DNA	EFO	SRS160357	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC10A-1_1pA	SRX099654	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_8.bam	SRR566183	@dbgap@:reads/SRP012006/SRS160357/SRX099654/SRR566183/SRR566183.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-10A-01D	DNA	EFO	SRS160357	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC10A-1_1pA	SRX099654	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_8.bam	SRR566183	@dbgap@:reads/SRP012006/SRS160357/SRX099654/SRR566183/SRR566183.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-10A-01D	DNA	EFO	SRS160357	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC10A-1_1pA	SRX099654	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_8.bam	SRR566183	@dbgap@:reads/SRP012006/SRS160357/SRX099654/SRR566183/SRR566183.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-10A-01D	DNA	EFO	SRS160357	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC10A-1_1pA	SRX099654	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_8.bam	SRR566183	@dbgap@:reads/SRP012006/SRS160357/SRX099654/SRR566183/SRR566183.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-10A-01D	DNA	EFO	SRS160357	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC10A-1_1pA	SRX099654	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-10A-01D ING_WTSRG.PAJMVC10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_8.bam	SRR566183	@dbgap@:reads/SRP012006/SRS160357/SRX099654/SRR566183/SRR566183.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-10A-01D	DNA	EFO	SRS160357	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMVC-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMVC-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMVC-10A-01D	SRX959524	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMVC-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMVC-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMVC-10A-01D run	sequencing assay	EFO	131	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMVC-10A-01D.bam	SRR1919244	@dbgap@:reads/SRP012006/SRS160357/SRX959524/SRR1919244/SRR1919244.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-11A-01D	DNA	EFO	SRS160358	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-11A-01D ING_WTSRG.PAJMVC11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC11A-1_1pA	SRX099678	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-11A-01D ING_WTSRG.PAJMVC11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_2.bam	SRR566204	@dbgap@:reads/SRP012006/SRS160358/SRX099678/SRR566204/SRR566204.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-11A-01D	DNA	EFO	SRS160358	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-11A-01D ING_WTSRG.PAJMVC11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC11A-1_1pA	SRX099678	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-11A-01D ING_WTSRG.PAJMVC11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_2.bam	SRR566204	@dbgap@:reads/SRP012006/SRS160358/SRX099678/SRR566204/SRR566204.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-11A-01D	DNA	EFO	SRS160358	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-11A-01D ING_WTSRG.PAJMVC11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC11A-1_1pA	SRX099678	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-11A-01D ING_WTSRG.PAJMVC11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_2.bam	SRR566204	@dbgap@:reads/SRP012006/SRS160358/SRX099678/SRR566204/SRR566204.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-11A-01D	DNA	EFO	SRS160358	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJMVC-11A-01D ING_WTSRG.PAJMVC11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJMVC11A-1_1pA	SRX099678	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJMVC-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJMVC-11A-01D ING_WTSRG.PAJMVC11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_2.bam	SRR566204	@dbgap@:reads/SRP012006/SRS160358/SRX099678/SRR566204/SRR566204.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJMVC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJMVC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJMVC-11A-01D	DNA	EFO	SRS160358	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJMVC-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMVC-11A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJMVC-11A-01D	SRX959527	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJMVC-11A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJMVC-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJMVC-11A-01D run	sequencing assay	EFO	116	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJMVC-11A-01D.bam	SRR1919247	@dbgap@:reads/SRP012006/SRS160358/SRX959527/SRR1919247/SRR1919247.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01D	DNA	EFO	SRS160359	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH01A-1_1pA	SRX100050	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_6.bam	SRR566172	@dbgap@:reads/SRP012006/SRS160359/SRX100050/SRR566172/SRR566172.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01D	DNA	EFO	SRS160359	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH01A-1_1pA	SRX100050	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_6.bam	SRR566172	@dbgap@:reads/SRP012006/SRS160359/SRX100050/SRR566172/SRR566172.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01D	DNA	EFO	SRS160359	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH01A-1_1pA	SRX100050	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_6.bam	SRR566172	@dbgap@:reads/SRP012006/SRS160359/SRX100050/SRR566172/SRR566172.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01D	DNA	EFO	SRS160359	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH01A-1_1pA	SRX100050	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_6.bam	SRR566172	@dbgap@:reads/SRP012006/SRS160359/SRX100050/SRR566172/SRR566172.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01D	DNA	EFO	SRS160359	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH01A-1_1pA	SRX100050	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-01A-01D ING_WTSRG.PAJNGH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_6.bam	SRR566172	@dbgap@:reads/SRP012006/SRS160359/SRX100050/SRR566172/SRR566172.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-01A-01D	DNA	EFO	SRS160359	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNGH-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNGH-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNGH-01A-01D	SRX959526	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNGH-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNGH-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNGH-01A-01D run	sequencing assay	EFO	120	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNGH-01A-01D.bam	SRR1919246	@dbgap@:reads/SRP012006/SRS160359/SRX959526/SRR1919246/SRR1919246.sra	2	GRCh37	bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01D	DNA	EFO	SRS160360	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH02A-1_1pA	SRX100051	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_7.bam	SRR566171	@dbgap@:reads/SRP012006/SRS160360/SRX100051/SRR566171/SRR566171.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01D	DNA	EFO	SRS160360	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH02A-1_1pA	SRX100051	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_7.bam	SRR566171	@dbgap@:reads/SRP012006/SRS160360/SRX100051/SRR566171/SRR566171.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01D	DNA	EFO	SRS160360	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH02A-1_1pA	SRX100051	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_7.bam	SRR566171	@dbgap@:reads/SRP012006/SRS160360/SRX100051/SRR566171/SRR566171.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01D	DNA	EFO	SRS160360	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH02A-1_1pA	SRX100051	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_7.bam	SRR566171	@dbgap@:reads/SRP012006/SRS160360/SRX100051/SRR566171/SRR566171.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01D	DNA	EFO	SRS160360	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH02A-1_1pA	SRX100051	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-02A-01D ING_WTSRG.PAJNGH02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110202_SN166_0165_A81k5wabxx_7.bam	SRR566171	@dbgap@:reads/SRP012006/SRS160360/SRX100051/SRR566171/SRR566171.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-02A-01D	DNA	EFO	SRS160360	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNGH-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNGH-02A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNGH-02A-01D	SRX959525	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNGH-02A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNGH-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNGH-02A-01D run	sequencing assay	EFO	132	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNGH-02A-01D.bam	SRR1919245	@dbgap@:reads/SRP012006/SRS160360/SRX959525/SRR1919245/SRR1919245.sra	2	GRCh37	bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-10A-01D	DNA	EFO	SRS160361	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH10A-1_1pA	SRX100052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_6.bam	SRR566179	@dbgap@:reads/SRP012006/SRS160361/SRX100052/SRR566179/SRR566179.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-10A-01D	DNA	EFO	SRS160361	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH10A-1_1pA	SRX100052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_6.bam	SRR566179	@dbgap@:reads/SRP012006/SRS160361/SRX100052/SRR566179/SRR566179.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-10A-01D	DNA	EFO	SRS160361	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH10A-1_1pA	SRX100052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_6.bam	SRR566179	@dbgap@:reads/SRP012006/SRS160361/SRX100052/SRR566179/SRR566179.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-10A-01D	DNA	EFO	SRS160361	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH10A-1_1pA	SRX100052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_6.bam	SRR566179	@dbgap@:reads/SRP012006/SRS160361/SRX100052/SRR566179/SRR566179.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-10A-01D	DNA	EFO	SRS160361	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH10A-1_1pA	SRX100052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_6.bam	SRR566179	@dbgap@:reads/SRP012006/SRS160361/SRX100052/SRR566179/SRR566179.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-10A-01D	DNA	EFO	SRS160361	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNGH10A-1_1pA	SRX100052	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNGH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNGH-10A-01D ING_WTSRG.PAJNGH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_6.bam	SRR566179	@dbgap@:reads/SRP012006/SRS160361/SRX100052/SRR566179/SRR566179.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNGH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNGH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNGH-10A-01D	DNA	EFO	SRS160361	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNGH-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNGH-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNGH-10A-01D	SRX959528	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNGH-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNGH-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNGH-10A-01D run	sequencing assay	EFO	122	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNGH-10A-01D.bam	SRR1919248	@dbgap@:reads/SRP012006/SRS160361/SRX959528/SRR1919248/SRR1919248.sra	2	GRCh37	bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01D	DNA	EFO	SRS160362	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNLT-01A-01D IWX_WTSRG.PAJNLT01A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNLT01A-1_2pA	SRX157462	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNLT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNLT-01A-01D IWX_WTSRG.PAJNLT01A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120601_SN898_0239_BD10AWACXX_5_ID08.bam	SRR566556	@dbgap@:reads/SRP012006/SRS160362/SRX157462/SRR566556/SRR566556.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01D	DNA	EFO	SRS160362	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNLT-01A-01D IWX_WTSRG.PAJNLT01A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNLT01A-1_2pA	SRX157462	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNLT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNLT-01A-01D IWX_WTSRG.PAJNLT01A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120601_SN898_0239_BD10AWACXX_5_ID08.bam	SRR566556	@dbgap@:reads/SRP012006/SRS160362/SRX157462/SRR566556/SRR566556.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01D	DNA	EFO	SRS160362	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNLT-01A-01D IWX_WTSRG.PAJNLT01A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNLT01A-1_2pA	SRX157462	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNLT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNLT-01A-01D IWX_WTSRG.PAJNLT01A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120601_SN898_0239_BD10AWACXX_5_ID08.bam	SRR566556	@dbgap@:reads/SRP012006/SRS160362/SRX157462/SRR566556/SRR566556.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01D	DNA	EFO	SRS160362	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNLT-01A-01D IWX_WTSRG.PAJNLT01A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNLT01A-1_2pA	SRX157462	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNLT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNLT-01A-01D IWX_WTSRG.PAJNLT01A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120601_SN898_0239_BD10AWACXX_5_ID08.bam	SRR566556	@dbgap@:reads/SRP012006/SRS160362/SRX157462/SRR566556/SRR566556.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-01A-01D	DNA	EFO	SRS160362	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNLT-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNLT-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNLT-01A-01D	SRX959530	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNLT-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNLT-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNLT-01A-01D run	sequencing assay	EFO	194	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNLT-01A-01D.bam	SRR1919250	@dbgap@:reads/SRP012006/SRS160362/SRX959530/SRR1919250/SRR1919250.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-10A-01D	DNA	EFO	SRS160363	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNLT-10A-01D ING_WTSRG.PAJNLT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNLT10A-1_1pA	SRX100034	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNLT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNLT-10A-01D ING_WTSRG.PAJNLT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_3.bam	SRR566169	@dbgap@:reads/SRP012006/SRS160363/SRX100034/SRR566169/SRR566169.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-10A-01D	DNA	EFO	SRS160363	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNLT-10A-01D ING_WTSRG.PAJNLT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNLT10A-1_1pA	SRX100034	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNLT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNLT-10A-01D ING_WTSRG.PAJNLT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_3.bam	SRR566169	@dbgap@:reads/SRP012006/SRS160363/SRX100034/SRR566169/SRR566169.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-10A-01D	DNA	EFO	SRS160363	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNLT-10A-01D ING_WTSRG.PAJNLT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNLT10A-1_1pA	SRX100034	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNLT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNLT-10A-01D ING_WTSRG.PAJNLT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_3.bam	SRR566169	@dbgap@:reads/SRP012006/SRS160363/SRX100034/SRR566169/SRR566169.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-10A-01D	DNA	EFO	SRS160363	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNLT-10A-01D ING_WTSRG.PAJNLT10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNLT10A-1_1pA	SRX100034	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNLT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNLT-10A-01D ING_WTSRG.PAJNLT10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_3.bam	SRR566169	@dbgap@:reads/SRP012006/SRS160363/SRX100034/SRR566169/SRR566169.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNLT-10A-01D	DNA	EFO	SRS160363	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNLT-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNLT-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNLT-10A-01D	SRX959529	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNLT-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNLT-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNLT-10A-01D run	sequencing assay	EFO	182	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNLT-10A-01D.bam	SRR1919249	@dbgap@:reads/SRP012006/SRS160363/SRX959529/SRR1919249/SRR1919249.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNC-01A-01D PPTPWT.TARGET-50-PAJNNC-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PAJNNC-01A-01D-1_1AMP	SRX398142	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJNNC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNC-01A-01D PPTPWT.TARGET-50-PAJNNC-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID05.bam	SRR1057351	@dbgap@:reads/SRP012006/SRS190161/SRX398142/SRR1057351/SRR1057351.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNC-01A-01D PPTPWT.TARGET-50-PAJNNC-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PAJNNC-01A-01D-1_1AMP	SRX398142	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJNNC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNC-01A-01D PPTPWT.TARGET-50-PAJNNC-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID05.bam	SRR1057351	@dbgap@:reads/SRP012006/SRS190161/SRX398142/SRR1057351/SRR1057351.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNC-01A-01D PPTPWT.TARGET-50-PAJNNC-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PAJNNC-01A-01D-1_1AMP	SRX398142	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJNNC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNC-01A-01D PPTPWT.TARGET-50-PAJNNC-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID05.bam	SRR1057351	@dbgap@:reads/SRP012006/SRS190161/SRX398142/SRR1057351/SRR1057351.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-01A-01D	DNA	EFO	SRS190161	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNNC-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNNC-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNNC-01A-01D	SRX959531	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNNC-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNNC-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNNC-01A-01D run	sequencing assay	EFO	234	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNNC-01A-01D.bam	SRR1919251	@dbgap@:reads/SRP012006/SRS190161/SRX959531/SRR1919251/SRR1919251.sra	2	GRCh37						
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNC-11A-01D PPTPWT.TARGET-50-PAJNNC-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	21	PPTPWT.TARGET-50-PAJNNC-11A-01D-1_1AMP	SRX398143	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJNNC-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNC-11A-01D PPTPWT.TARGET-50-PAJNNC-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID06.bam	SRR1057352	@dbgap@:reads/SRP012006/SRS190162/SRX398143/SRR1057352/SRR1057352.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNC-11A-01D PPTPWT.TARGET-50-PAJNNC-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	21	PPTPWT.TARGET-50-PAJNNC-11A-01D-1_1AMP	SRX398143	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJNNC-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNC-11A-01D PPTPWT.TARGET-50-PAJNNC-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID06.bam	SRR1057352	@dbgap@:reads/SRP012006/SRS190162/SRX398143/SRR1057352/SRR1057352.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNC-11A-01D PPTPWT.TARGET-50-PAJNNC-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	21	PPTPWT.TARGET-50-PAJNNC-11A-01D-1_1AMP	SRX398143	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJNNC-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNC-11A-01D PPTPWT.TARGET-50-PAJNNC-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID06.bam	SRR1057352	@dbgap@:reads/SRP012006/SRS190162/SRX398143/SRR1057352/SRR1057352.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNC-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNC-11A-01D	DNA	EFO	SRS190162	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNNC-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNNC-11A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNNC-11A-01D	SRX959535	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNNC-11A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNNC-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNNC-11A-01D run	sequencing assay	EFO	257	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNNC-11A-01D.bam	SRR1919255	@dbgap@:reads/SRP012006/SRS190162/SRX959535/SRR1919255/SRR1919255.sra	2	GRCh37						
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01D	DNA	EFO	SRS160364	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNNR01A-1_1pA	SRX099655	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_4.bam	SRR566195	@dbgap@:reads/SRP012006/SRS160364/SRX099655/SRR566195/SRR566195.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01D	DNA	EFO	SRS160364	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNNR01A-1_1pA	SRX099655	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_4.bam	SRR566195	@dbgap@:reads/SRP012006/SRS160364/SRX099655/SRR566195/SRR566195.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01D	DNA	EFO	SRS160364	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNNR01A-1_1pA	SRX099655	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_4.bam	SRR566195	@dbgap@:reads/SRP012006/SRS160364/SRX099655/SRR566195/SRR566195.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01D	DNA	EFO	SRS160364	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNNR01A-1_1pA	SRX099655	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_4.bam	SRR566195	@dbgap@:reads/SRP012006/SRS160364/SRX099655/SRR566195/SRR566195.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01D	DNA	EFO	SRS160364	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNNR01A-1_1pA	SRX099655	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_4.bam	SRR566195	@dbgap@:reads/SRP012006/SRS160364/SRX099655/SRR566195/SRR566195.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01D	DNA	EFO	SRS160364	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNNR01A-1_1pA	SRX099655	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-01A-01D ING_WTSRG.PAJNNR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_4.bam	SRR566195	@dbgap@:reads/SRP012006/SRS160364/SRX099655/SRR566195/SRR566195.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-01A-01D	DNA	EFO	SRS160364	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNNR-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNNR-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNNR-01A-01D	SRX959545	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNNR-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNNR-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNNR-01A-01D run	sequencing assay	EFO	133	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNNR-01A-01D.bam	SRR1919265	@dbgap@:reads/SRP012006/SRS160364/SRX959545/SRR1919265/SRR1919265.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-10A-01D	DNA	EFO	SRS160365	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNNR10A-3_1pA	SRX147053	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID08_1.bam	SRR567925	@dbgap@:reads/SRP012006/SRS160365/SRX147053/SRR567925/SRR567925.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-10A-01D	DNA	EFO	SRS160365	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNNR10A-3_1pA	SRX147053	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID08_1.bam	SRR567925	@dbgap@:reads/SRP012006/SRS160365/SRX147053/SRR567925/SRR567925.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-10A-01D	DNA	EFO	SRS160365	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNNR10A-3_1pA	SRX147053	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID08_1.bam	SRR567925	@dbgap@:reads/SRP012006/SRS160365/SRX147053/SRR567925/SRR567925.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-10A-01D	DNA	EFO	SRS160365	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNNR10A-3_1pA	SRX147053	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID08_1.bam	SRR567925	@dbgap@:reads/SRP012006/SRS160365/SRX147053/SRR567925/SRR567925.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-10A-01D	DNA	EFO	SRS160365	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNNR10A-3_1pA	SRX147053	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID08_1.bam	SRR567925	@dbgap@:reads/SRP012006/SRS160365/SRX147053/SRR567925/SRR567925.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-10A-01D	DNA	EFO	SRS160365	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNNR10A-3_1pA	SRX147053	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNNR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNNR-10A-01D IWX_WTSRG.PAJNNR10A-3_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID08_1.bam	SRR567925	@dbgap@:reads/SRP012006/SRS160365/SRX147053/SRR567925/SRR567925.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNNR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNNR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNNR-10A-01D	DNA	EFO	SRS160365	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNNR-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNNR-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNNR-10A-01D	SRX959532	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNNR-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNNR-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNNR-10A-01D run	sequencing assay	EFO	131	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNNR-10A-01D.bam	SRR1919252	@dbgap@:reads/SRP012006/SRS160365/SRX959532/SRR1919252/SRR1919252.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01D	DNA	EFO	SRS160366	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH01A-1_1pA	SRX099687	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_3.bam	SRR566182	@dbgap@:reads/SRP012006/SRS160366/SRX099687/SRR566182/SRR566182.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01D	DNA	EFO	SRS160366	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH01A-1_1pA	SRX099687	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_3.bam	SRR566182	@dbgap@:reads/SRP012006/SRS160366/SRX099687/SRR566182/SRR566182.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01D	DNA	EFO	SRS160366	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH01A-1_1pA	SRX099687	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_3.bam	SRR566182	@dbgap@:reads/SRP012006/SRS160366/SRX099687/SRR566182/SRR566182.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01D	DNA	EFO	SRS160366	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH01A-1_1pA	SRX099687	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_3.bam	SRR566182	@dbgap@:reads/SRP012006/SRS160366/SRX099687/SRR566182/SRR566182.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01D	DNA	EFO	SRS160366	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH01A-1_1pA	SRX099687	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-01A-01D ING_WTSRG.PAJNRH01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_3.bam	SRR566182	@dbgap@:reads/SRP012006/SRS160366/SRX099687/SRR566182/SRR566182.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-01A-01D	DNA	EFO	SRS160366	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNRH-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNRH-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNRH-01A-01D	SRX959534	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNRH-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNRH-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNRH-01A-01D run	sequencing assay	EFO	89	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNRH-01A-01D.bam	SRR1919254	@dbgap@:reads/SRP012006/SRS160366/SRX959534/SRR1919254/SRR1919254.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-10A-01D	DNA	EFO	SRS160367	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH10A-1_1pA	SRX099688	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_4.bam	SRR566196	@dbgap@:reads/SRP012006/SRS160367/SRX099688/SRR566196/SRR566196.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-10A-01D	DNA	EFO	SRS160367	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH10A-1_1pA	SRX099688	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_4.bam	SRR566196	@dbgap@:reads/SRP012006/SRS160367/SRX099688/SRR566196/SRR566196.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-10A-01D	DNA	EFO	SRS160367	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH10A-1_1pA	SRX099688	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_4.bam	SRR566196	@dbgap@:reads/SRP012006/SRS160367/SRX099688/SRR566196/SRR566196.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-10A-01D	DNA	EFO	SRS160367	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH10A-1_1pA	SRX099688	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_4.bam	SRR566196	@dbgap@:reads/SRP012006/SRS160367/SRX099688/SRR566196/SRR566196.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-10A-01D	DNA	EFO	SRS160367	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNRH10A-1_1pA	SRX099688	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNRH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNRH-10A-01D ING_WTSRG.PAJNRH10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN142_0324_B81JTNABXX_4.bam	SRR566196	@dbgap@:reads/SRP012006/SRS160367/SRX099688/SRR566196/SRR566196.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNRH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNRH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNRH-10A-01D	DNA	EFO	SRS160367	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNRH-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNRH-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNRH-10A-01D	SRX959537	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNRH-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNRH-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNRH-10A-01D run	sequencing assay	EFO	91	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNRH-10A-01D.bam	SRR1919257	@dbgap@:reads/SRP012006/SRS160367/SRX959537/SRR1919257/SRR1919257.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01D	DNA	EFO	SRS160368	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNTJ01A-4_2pA	SRX147054	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID03_1.bam	SRR567944	@dbgap@:reads/SRP012006/SRS160368/SRX147054/SRR567944/SRR567944.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01D	DNA	EFO	SRS160368	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNTJ01A-4_2pA	SRX147054	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID03_1.bam	SRR567944	@dbgap@:reads/SRP012006/SRS160368/SRX147054/SRR567944/SRR567944.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01D	DNA	EFO	SRS160368	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNTJ01A-4_2pA	SRX147054	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID03_1.bam	SRR567944	@dbgap@:reads/SRP012006/SRS160368/SRX147054/SRR567944/SRR567944.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01D	DNA	EFO	SRS160368	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNTJ01A-4_2pA	SRX147054	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID03_1.bam	SRR567944	@dbgap@:reads/SRP012006/SRS160368/SRX147054/SRR567944/SRR567944.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01D	DNA	EFO	SRS160368	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNTJ01A-4_2pA	SRX147054	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-01A-01D IWX_WTSRG.PAJNTJ01A-4_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID03_1.bam	SRR567944	@dbgap@:reads/SRP012006/SRS160368/SRX147054/SRR567944/SRR567944.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-01A-01D	DNA	EFO	SRS160368	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNTJ-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNTJ-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNTJ-01A-01D	SRX959548	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNTJ-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNTJ-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNTJ-01A-01D run	sequencing assay	EFO	130	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNTJ-01A-01D.bam	SRR1919268	@dbgap@:reads/SRP012006/SRS160368/SRX959548/SRR1919268/SRR1919268.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01D	DNA	EFO	SRS160369	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ02A-1_1pA	SRX100019	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_7.bam	SRR566185	@dbgap@:reads/SRP012006/SRS160369/SRX100019/SRR566185/SRR566185.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01D	DNA	EFO	SRS160369	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ02A-1_1pA	SRX100019	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_7.bam	SRR566185	@dbgap@:reads/SRP012006/SRS160369/SRX100019/SRR566185/SRR566185.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01D	DNA	EFO	SRS160369	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ02A-1_1pA	SRX100019	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_7.bam	SRR566185	@dbgap@:reads/SRP012006/SRS160369/SRX100019/SRR566185/SRR566185.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01D	DNA	EFO	SRS160369	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ02A-1_1pA	SRX100019	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_7.bam	SRR566185	@dbgap@:reads/SRP012006/SRS160369/SRX100019/SRR566185/SRR566185.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01D	DNA	EFO	SRS160369	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ02A-1_1pA	SRX100019	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-02A-01D ING_WTSRG.PAJNTJ02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_7.bam	SRR566185	@dbgap@:reads/SRP012006/SRS160369/SRX100019/SRR566185/SRR566185.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-02A-01D	DNA	EFO	SRS160369	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNTJ-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNTJ-02A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNTJ-02A-01D	SRX959536	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNTJ-02A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNTJ-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNTJ-02A-01D run	sequencing assay	EFO	132	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNTJ-02A-01D.bam	SRR1919256	@dbgap@:reads/SRP012006/SRS160369/SRX959536/SRR1919256/SRR1919256.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-10A-01D	DNA	EFO	SRS160370	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ10A-1_1pA	SRX100035	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_8.bam	SRR566209	@dbgap@:reads/SRP012006/SRS160370/SRX100035/SRR566209/SRR566209.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-10A-01D	DNA	EFO	SRS160370	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ10A-1_1pA	SRX100035	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_8.bam	SRR566209	@dbgap@:reads/SRP012006/SRS160370/SRX100035/SRR566209/SRR566209.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-10A-01D	DNA	EFO	SRS160370	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ10A-1_1pA	SRX100035	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_8.bam	SRR566209	@dbgap@:reads/SRP012006/SRS160370/SRX100035/SRR566209/SRR566209.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-10A-01D	DNA	EFO	SRS160370	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ10A-1_1pA	SRX100035	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_8.bam	SRR566209	@dbgap@:reads/SRP012006/SRS160370/SRX100035/SRR566209/SRR566209.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-10A-01D	DNA	EFO	SRS160370	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ10A-1_1pA	SRX100035	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_8.bam	SRR566209	@dbgap@:reads/SRP012006/SRS160370/SRX100035/SRR566209/SRR566209.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-10A-01D	DNA	EFO	SRS160370	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNTJ10A-1_1pA	SRX100035	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNTJ-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNTJ-10A-01D ING_WTSRG.PAJNTJ10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN166_0166_B81K3AABXX_8.bam	SRR566209	@dbgap@:reads/SRP012006/SRS160370/SRX100035/SRR566209/SRR566209.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNTJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNTJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNTJ-10A-01D	DNA	EFO	SRS160370	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNTJ-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNTJ-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNTJ-10A-01D	SRX959544	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNTJ-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNTJ-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNTJ-10A-01D run	sequencing assay	EFO	133	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNTJ-10A-01D.bam	SRR1919264	@dbgap@:reads/SRP012006/SRS160370/SRX959544/SRR1919264/SRR1919264.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01D	DNA	EFO	SRS160371	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNUP01A-1_3pA	SRX147062	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID02_1.bam	SRR567923	@dbgap@:reads/SRP012006/SRS160371/SRX147062/SRR567923/SRR567923.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01D	DNA	EFO	SRS160371	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNUP01A-1_3pA	SRX147062	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID02_1.bam	SRR567923	@dbgap@:reads/SRP012006/SRS160371/SRX147062/SRR567923/SRR567923.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01D	DNA	EFO	SRS160371	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNUP01A-1_3pA	SRX147062	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID02_1.bam	SRR567923	@dbgap@:reads/SRP012006/SRS160371/SRX147062/SRR567923/SRR567923.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01D	DNA	EFO	SRS160371	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNUP01A-1_3pA	SRX147062	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID02_1.bam	SRR567923	@dbgap@:reads/SRP012006/SRS160371/SRX147062/SRR567923/SRR567923.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01D	DNA	EFO	SRS160371	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJNUP01A-1_3pA	SRX147062	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-01A-01D IWX_WTSRG.PAJNUP01A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID02_1.bam	SRR567923	@dbgap@:reads/SRP012006/SRS160371/SRX147062/SRR567923/SRR567923.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-01A-01D	DNA	EFO	SRS160371	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNUP-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNUP-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNUP-01A-01D	SRX959540	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNUP-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNUP-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNUP-01A-01D run	sequencing assay	EFO	134	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNUP-01A-01D.bam	SRR1919260	@dbgap@:reads/SRP012006/SRS160371/SRX959540/SRR1919260/SRR1919260.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-10A-01D	DNA	EFO	SRS160372	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNUP10A-1_1pA	SRX099689	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0322_A81JTRABXX_2.bam	SRR566207	@dbgap@:reads/SRP012006/SRS160372/SRX099689/SRR566207/SRR566207.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-10A-01D	DNA	EFO	SRS160372	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNUP10A-1_1pA	SRX099689	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0322_A81JTRABXX_2.bam	SRR566207	@dbgap@:reads/SRP012006/SRS160372/SRX099689/SRR566207/SRR566207.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-10A-01D	DNA	EFO	SRS160372	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNUP10A-1_1pA	SRX099689	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0322_A81JTRABXX_2.bam	SRR566207	@dbgap@:reads/SRP012006/SRS160372/SRX099689/SRR566207/SRR566207.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-10A-01D	DNA	EFO	SRS160372	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNUP10A-1_1pA	SRX099689	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0322_A81JTRABXX_2.bam	SRR566207	@dbgap@:reads/SRP012006/SRS160372/SRX099689/SRR566207/SRR566207.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-10A-01D	DNA	EFO	SRS160372	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNUP10A-1_1pA	SRX099689	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNUP-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNUP-10A-01D ING_WTSRG.PAJNUP10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0322_A81JTRABXX_2.bam	SRR566207	@dbgap@:reads/SRP012006/SRS160372/SRX099689/SRR566207/SRR566207.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNUP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNUP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNUP-10A-01D	DNA	EFO	SRS160372	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNUP-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNUP-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNUP-10A-01D	SRX959542	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNUP-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNUP-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNUP-10A-01D run	sequencing assay	EFO	135	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNUP-10A-01D.bam	SRR1919262	@dbgap@:reads/SRP012006/SRS160372/SRX959542/SRR1919262/SRR1919262.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01D	DNA	EFO	SRS160373	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE01A-1_1pA	SRX099690	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_4.bam	SRR566214	@dbgap@:reads/SRP012006/SRS160373/SRX099690/SRR566214/SRR566214.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01D	DNA	EFO	SRS160373	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE01A-1_1pA	SRX099690	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_4.bam	SRR566214	@dbgap@:reads/SRP012006/SRS160373/SRX099690/SRR566214/SRR566214.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01D	DNA	EFO	SRS160373	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE01A-1_1pA	SRX099690	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_4.bam	SRR566214	@dbgap@:reads/SRP012006/SRS160373/SRX099690/SRR566214/SRR566214.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01D	DNA	EFO	SRS160373	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE01A-1_1pA	SRX099690	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_4.bam	SRR566214	@dbgap@:reads/SRP012006/SRS160373/SRX099690/SRR566214/SRR566214.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01D	DNA	EFO	SRS160373	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE01A-1_1pA	SRX099690	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-01A-01D ING_WTSRG.PAJNVE01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_4.bam	SRR566214	@dbgap@:reads/SRP012006/SRS160373/SRX099690/SRR566214/SRR566214.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-01A-01D	DNA	EFO	SRS160373	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNVE-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNVE-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNVE-01A-01D	SRX959538	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNVE-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNVE-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNVE-01A-01D run	sequencing assay	EFO	156	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNVE-01A-01D.bam	SRR1919258	@dbgap@:reads/SRP012006/SRS160373/SRX959538/SRR1919258/SRR1919258.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-10A-01D	DNA	EFO	SRS160374	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE10A-1_1pA	SRX099691	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_5.bam	SRR566208	@dbgap@:reads/SRP012006/SRS160374/SRX099691/SRR566208/SRR566208.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-10A-01D	DNA	EFO	SRS160374	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE10A-1_1pA	SRX099691	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_5.bam	SRR566208	@dbgap@:reads/SRP012006/SRS160374/SRX099691/SRR566208/SRR566208.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-10A-01D	DNA	EFO	SRS160374	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE10A-1_1pA	SRX099691	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_5.bam	SRR566208	@dbgap@:reads/SRP012006/SRS160374/SRX099691/SRR566208/SRR566208.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-10A-01D	DNA	EFO	SRS160374	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE10A-1_1pA	SRX099691	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_5.bam	SRR566208	@dbgap@:reads/SRP012006/SRS160374/SRX099691/SRR566208/SRR566208.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-10A-01D	DNA	EFO	SRS160374	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJNVE10A-1_1pA	SRX099691	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVE-10A-01D ING_WTSRG.PAJNVE10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_5.bam	SRR566208	@dbgap@:reads/SRP012006/SRS160374/SRX099691/SRR566208/SRR566208.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVE-10A-01D	DNA	EFO	SRS160374	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNVE-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNVE-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNVE-10A-01D	SRX959539	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNVE-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNVE-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNVE-10A-01D run	sequencing assay	EFO	163	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNVE-10A-01D.bam	SRR1919259	@dbgap@:reads/SRP012006/SRS160374/SRX959539/SRR1919259/SRR1919259.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01D	DNA	EFO	SRS160375	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA library	SINGLE	GENOMIC	WXS	Hybrid Selection			IWX_WTSRG.PAJNVX01A-2_1pA	SRX147063	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120123_SN821_0156_BD0JABACXX_4_ID09_1.bam	SRR567922	@dbgap@:reads/SRP012006/SRS160375/SRX147063/SRR567922/SRR567922.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01D	DNA	EFO	SRS160375	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA library	SINGLE	GENOMIC	WXS	Hybrid Selection			IWX_WTSRG.PAJNVX01A-2_1pA	SRX147063	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120123_SN821_0156_BD0JABACXX_4_ID09_1.bam	SRR567922	@dbgap@:reads/SRP012006/SRS160375/SRX147063/SRR567922/SRR567922.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01D	DNA	EFO	SRS160375	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA library	SINGLE	GENOMIC	WXS	Hybrid Selection			IWX_WTSRG.PAJNVX01A-2_1pA	SRX147063	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120123_SN821_0156_BD0JABACXX_4_ID09_1.bam	SRR567922	@dbgap@:reads/SRP012006/SRS160375/SRX147063/SRR567922/SRR567922.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01D	DNA	EFO	SRS160375	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA library	SINGLE	GENOMIC	WXS	Hybrid Selection			IWX_WTSRG.PAJNVX01A-2_1pA	SRX147063	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120123_SN821_0156_BD0JABACXX_4_ID09_1.bam	SRR567922	@dbgap@:reads/SRP012006/SRS160375/SRX147063/SRR567922/SRR567922.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01D	DNA	EFO	SRS160375	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA library	SINGLE	GENOMIC	WXS	Hybrid Selection			IWX_WTSRG.PAJNVX01A-2_1pA	SRX147063	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJNVX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-01A-01D IWX_WTSRG.PAJNVX01A-2_1pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120123_SN821_0156_BD0JABACXX_4_ID09_1.bam	SRR567922	@dbgap@:reads/SRP012006/SRS160375/SRX147063/SRR567922/SRR567922.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-01A-01D	DNA	EFO	SRS160375	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNVX-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNVX-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNVX-01A-01D	SRX959541	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNVX-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNVX-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNVX-01A-01D run	sequencing assay	EFO	174	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNVX-01A-01D.bam	SRR1919261	@dbgap@:reads/SRP012006/SRS160375/SRX959541/SRR1919261/SRR1919261.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-10A-01D	DNA	EFO	SRS160376	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		IWX_WTSRG.PAJNVX10A-1_2pA	SRX147067		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID06_1.bam	SRR567921	@dbgap@:reads/SRP012006/SRS160376/SRX147067/SRR567921/SRR567921.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-10A-01D	DNA	EFO	SRS160376	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		IWX_WTSRG.PAJNVX10A-1_2pA	SRX147067		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID06_1.bam	SRR567921	@dbgap@:reads/SRP012006/SRS160376/SRX147067/SRR567921/SRR567921.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-10A-01D	DNA	EFO	SRS160376	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		IWX_WTSRG.PAJNVX10A-1_2pA	SRX147067		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID06_1.bam	SRR567921	@dbgap@:reads/SRP012006/SRS160376/SRX147067/SRR567921/SRR567921.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-10A-01D	DNA	EFO	SRS160376	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		IWX_WTSRG.PAJNVX10A-1_2pA	SRX147067		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID06_1.bam	SRR567921	@dbgap@:reads/SRP012006/SRS160376/SRX147067/SRR567921/SRR567921.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-10A-01D	DNA	EFO	SRS160376	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200		IWX_WTSRG.PAJNVX10A-1_2pA	SRX147067		bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJNVX-10A-01D IWX_WTSRG.PAJNVX10A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01		bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID06_1.bam	SRR567921	@dbgap@:reads/SRP012006/SRS160376/SRX147067/SRR567921/SRR567921.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJNVX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJNVX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJNVX-10A-01D	DNA	EFO	SRS160376	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJNVX-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNVX-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJNVX-10A-01D	SRX959543	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJNVX-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJNVX-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJNVX-10A-01D run	sequencing assay	EFO	156	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJNVX-10A-01D.bam	SRR1919263	@dbgap@:reads/SRP012006/SRS160376/SRX959543/SRR1919263/SRR1919263.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPAR-01A-01D PPTPWT.TARGET-50-PAJPAR-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PAJPAR-01A-01D-1_1AMP	SRX398144	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPAR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPAR-01A-01D PPTPWT.TARGET-50-PAJPAR-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID07.bam	SRR1057353	@dbgap@:reads/SRP012006/SRS190173/SRX398144/SRR1057353/SRR1057353.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPAR-01A-01D PPTPWT.TARGET-50-PAJPAR-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PAJPAR-01A-01D-1_1AMP	SRX398144	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPAR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPAR-01A-01D PPTPWT.TARGET-50-PAJPAR-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID07.bam	SRR1057353	@dbgap@:reads/SRP012006/SRS190173/SRX398144/SRR1057353/SRR1057353.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPAR-01A-01D PPTPWT.TARGET-50-PAJPAR-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PAJPAR-01A-01D-1_1AMP	SRX398144	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPAR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPAR-01A-01D PPTPWT.TARGET-50-PAJPAR-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID07.bam	SRR1057353	@dbgap@:reads/SRP012006/SRS190173/SRX398144/SRR1057353/SRR1057353.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-01A-01D	DNA	EFO	SRS190173	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJPAR-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPAR-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJPAR-01A-01D	SRX959563	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJPAR-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJPAR-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPAR-01A-01D run	sequencing assay	EFO	196	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJPAR-01A-01D.bam	SRR1919283	@dbgap@:reads/SRP012006/SRS190173/SRX959563/SRR1919283/SRR1919283.sra	2	GRCh37						
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPAR-11A-01D PPTPWT.TARGET-50-PAJPAR-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	21.6	PPTPWT.TARGET-50-PAJPAR-11A-01D-1_1AMP	SRX398145	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPAR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPAR-11A-01D PPTPWT.TARGET-50-PAJPAR-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID08.bam	SRR1057354	@dbgap@:reads/SRP012006/SRS190174/SRX398145/SRR1057354/SRR1057354.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPAR-11A-01D PPTPWT.TARGET-50-PAJPAR-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	21.6	PPTPWT.TARGET-50-PAJPAR-11A-01D-1_1AMP	SRX398145	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPAR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPAR-11A-01D PPTPWT.TARGET-50-PAJPAR-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID08.bam	SRR1057354	@dbgap@:reads/SRP012006/SRS190174/SRX398145/SRR1057354/SRR1057354.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPAR-11A-01D PPTPWT.TARGET-50-PAJPAR-11A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	216	21.6	PPTPWT.TARGET-50-PAJPAR-11A-01D-1_1AMP	SRX398145	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPAR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPAR-11A-01D PPTPWT.TARGET-50-PAJPAR-11A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130820_SN896_0406_BC28FAACXX_2_ID08.bam	SRR1057354	@dbgap@:reads/SRP012006/SRS190174/SRX398145/SRR1057354/SRR1057354.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJPAR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPAR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPAR-11A-01D	DNA	EFO	SRS190174	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJPAR-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPAR-11A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJPAR-11A-01D	SRX959546	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJPAR-11A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJPAR-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPAR-11A-01D run	sequencing assay	EFO	194	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJPAR-11A-01D.bam	SRR1919266	@dbgap@:reads/SRP012006/SRS190174/SRX959546/SRR1919266/SRR1919266.sra	2	GRCh37						
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01D	DNA	EFO	SRS190175	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPCM-01A-01D PPTPWT.TARGET-50-PAJPCM-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	217	21.7	PPTPWT.TARGET-50-PAJPCM-01A-01D-1_1AMP	SRX398146	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPCM-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPCM-01A-01D PPTPWT.TARGET-50-PAJPCM-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID09.bam	SRR1057355	@dbgap@:reads/SRP012006/SRS190175/SRX398146/SRR1057355/SRR1057355.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01D	DNA	EFO	SRS190175	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPCM-01A-01D PPTPWT.TARGET-50-PAJPCM-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	217	21.7	PPTPWT.TARGET-50-PAJPCM-01A-01D-1_1AMP	SRX398146	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPCM-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPCM-01A-01D PPTPWT.TARGET-50-PAJPCM-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID09.bam	SRR1057355	@dbgap@:reads/SRP012006/SRS190175/SRX398146/SRR1057355/SRR1057355.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01D	DNA	EFO	SRS190175	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPCM-01A-01D PPTPWT.TARGET-50-PAJPCM-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	217	21.7	PPTPWT.TARGET-50-PAJPCM-01A-01D-1_1AMP	SRX398146	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPCM-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPCM-01A-01D PPTPWT.TARGET-50-PAJPCM-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID09.bam	SRR1057355	@dbgap@:reads/SRP012006/SRS190175/SRX398146/SRR1057355/SRR1057355.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-01A-01D	DNA	EFO	SRS190175	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJPCM-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPCM-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJPCM-01A-01D	SRX959547	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJPCM-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJPCM-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPCM-01A-01D run	sequencing assay	EFO	202	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJPCM-01A-01D.bam	SRR1919267	@dbgap@:reads/SRP012006/SRS190175/SRX959547/SRR1919267/SRR1919267.sra	2							
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-10A-01D	DNA	EFO	SRS190176	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPCM-10A-01D PPTPWT.TARGET-50-PAJPCM-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	21.4	PPTPWT.TARGET-50-PAJPCM-10A-01D-1_1AMP	SRX398147	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPCM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPCM-10A-01D PPTPWT.TARGET-50-PAJPCM-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID10.bam	SRR1057356	@dbgap@:reads/SRP012006/SRS190176/SRX398147/SRR1057356/SRR1057356.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-10A-01D	DNA	EFO	SRS190176	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPCM-10A-01D PPTPWT.TARGET-50-PAJPCM-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	21.4	PPTPWT.TARGET-50-PAJPCM-10A-01D-1_1AMP	SRX398147	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPCM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPCM-10A-01D PPTPWT.TARGET-50-PAJPCM-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID10.bam	SRR1057356	@dbgap@:reads/SRP012006/SRS190176/SRX398147/SRR1057356/SRR1057356.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-10A-01D	DNA	EFO	SRS190176	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPCM-10A-01D PPTPWT.TARGET-50-PAJPCM-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	214	21.4	PPTPWT.TARGET-50-PAJPCM-10A-01D-1_1AMP	SRX398147	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAJPCM-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPCM-10A-01D PPTPWT.TARGET-50-PAJPCM-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID10.bam	SRR1057356	@dbgap@:reads/SRP012006/SRS190176/SRX398147/SRR1057356/SRR1057356.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJPCM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPCM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPCM-10A-01D	DNA	EFO	SRS190176	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJPCM-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPCM-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJPCM-10A-01D	SRX959549	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJPCM-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJPCM-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPCM-10A-01D run	sequencing assay	EFO	200	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJPCM-10A-01D.bam	SRR1919269	@dbgap@:reads/SRP012006/SRS190176/SRX959549/SRR1919269/SRR1919269.sra	2							
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01D	DNA	EFO	SRS160377	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC01A-1_1pA	SRX100069	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_7.bam	SRR566181	@dbgap@:reads/SRP012006/SRS160377/SRX100069/SRR566181/SRR566181.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01D	DNA	EFO	SRS160377	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC01A-1_1pA	SRX100069	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_7.bam	SRR566181	@dbgap@:reads/SRP012006/SRS160377/SRX100069/SRR566181/SRR566181.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01D	DNA	EFO	SRS160377	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC01A-1_1pA	SRX100069	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_7.bam	SRR566181	@dbgap@:reads/SRP012006/SRS160377/SRX100069/SRR566181/SRR566181.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01D	DNA	EFO	SRS160377	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC01A-1_1pA	SRX100069	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_7.bam	SRR566181	@dbgap@:reads/SRP012006/SRS160377/SRX100069/SRR566181/SRR566181.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01D	DNA	EFO	SRS160377	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC01A-1_1pA	SRX100069	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-01A-01D ING_WTSRG.PAJPDC01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110224_SN166_0169_A81KJ7ABXX_7.bam	SRR566181	@dbgap@:reads/SRP012006/SRS160377/SRX100069/SRR566181/SRR566181.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-01A-01D	DNA	EFO	SRS160377	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJPDC-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPDC-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJPDC-01A-01D	SRX959557	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJPDC-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJPDC-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPDC-01A-01D run	sequencing assay	EFO	112	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJPDC-01A-01D.bam	SRR1919277	@dbgap@:reads/SRP012006/SRS160377/SRX959557/SRR1919277/SRR1919277.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01D	DNA	EFO	SRS160378	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC02A-1_1pA	SRX100070	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_1.bam	SRR566555	@dbgap@:reads/SRP012006/SRS160378/SRX100070/SRR566555/SRR566555.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01D	DNA	EFO	SRS160378	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC02A-1_1pA	SRX100070	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_1.bam	SRR566555	@dbgap@:reads/SRP012006/SRS160378/SRX100070/SRR566555/SRR566555.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01D	DNA	EFO	SRS160378	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC02A-1_1pA	SRX100070	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_1.bam	SRR566555	@dbgap@:reads/SRP012006/SRS160378/SRX100070/SRR566555/SRR566555.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01D	DNA	EFO	SRS160378	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC02A-1_1pA	SRX100070	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_1.bam	SRR566555	@dbgap@:reads/SRP012006/SRS160378/SRX100070/SRR566555/SRR566555.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01D	DNA	EFO	SRS160378	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC02A-1_1pA	SRX100070	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_1.bam	SRR566555	@dbgap@:reads/SRP012006/SRS160378/SRX100070/SRR566555/SRR566555.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01D	DNA	EFO	SRS160378	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAJPDC02A-1_1pA	SRX100070	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-02A-01D ING_WTSRG.PAJPDC02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_1.bam	SRR566555	@dbgap@:reads/SRP012006/SRS160378/SRX100070/SRR566555/SRR566555.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-02A-01D	DNA	EFO	SRS160378	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJPDC-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPDC-02A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJPDC-02A-01D	SRX959550	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJPDC-02A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJPDC-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPDC-02A-01D run	sequencing assay	EFO	155	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJPDC-02A-01D.bam	SRR1919270	@dbgap@:reads/SRP012006/SRS160378/SRX959550/SRR1919270/SRR1919270.sra	2	GRCh37	bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-10A-01D	DNA	EFO	SRS160379	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJPDC10A-1_3pA	SRX147068	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID01_1.bam	SRR567924	@dbgap@:reads/SRP012006/SRS160379/SRX147068/SRR567924/SRR567924.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-10A-01D	DNA	EFO	SRS160379	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJPDC10A-1_3pA	SRX147068	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID01_1.bam	SRR567924	@dbgap@:reads/SRP012006/SRS160379/SRX147068/SRR567924/SRR567924.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-10A-01D	DNA	EFO	SRS160379	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJPDC10A-1_3pA	SRX147068	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID01_1.bam	SRR567924	@dbgap@:reads/SRP012006/SRS160379/SRX147068/SRR567924/SRR567924.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-10A-01D	DNA	EFO	SRS160379	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJPDC10A-1_3pA	SRX147068	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID01_1.bam	SRR567924	@dbgap@:reads/SRP012006/SRS160379/SRX147068/SRR567924/SRR567924.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-10A-01D	DNA	EFO	SRS160379	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJPDC10A-1_3pA	SRX147068	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID01_1.bam	SRR567924	@dbgap@:reads/SRP012006/SRS160379/SRX147068/SRR567924/SRR567924.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-10A-01D	DNA	EFO	SRS160379	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJPDC10A-1_3pA	SRX147068	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID01_1.bam	SRR567924	@dbgap@:reads/SRP012006/SRS160379/SRX147068/SRR567924/SRR567924.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-10A-01D	DNA	EFO	SRS160379	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAJPDC10A-1_3pA	SRX147068	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAJPDC-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAJPDC-10A-01D IWX_WTSRG.PAJPDC10A-1_3pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID01_1.bam	SRR567924	@dbgap@:reads/SRP012006/SRS160379/SRX147068/SRR567924/SRR567924.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAJPDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAJPDC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAJPDC-10A-01D	DNA	EFO	SRS160379	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAJPDC-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPDC-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAJPDC-10A-01D	SRX959558	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAJPDC-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAJPDC-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAJPDC-10A-01D run	sequencing assay	EFO	148	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAJPDC-10A-01D.bam	SRR1919278	@dbgap@:reads/SRP012006/SRS160379/SRX959558/SRR1919278/SRR1919278.sra	2	GRCh37	bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01D	DNA	EFO	SRS160380	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR01A-1_1pA	SRX099679	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_6.bam	SRR566203	@dbgap@:reads/SRP012006/SRS160380/SRX099679/SRR566203/SRR566203.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01D	DNA	EFO	SRS160380	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR01A-1_1pA	SRX099679	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_6.bam	SRR566203	@dbgap@:reads/SRP012006/SRS160380/SRX099679/SRR566203/SRR566203.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01D	DNA	EFO	SRS160380	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR01A-1_1pA	SRX099679	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_6.bam	SRR566203	@dbgap@:reads/SRP012006/SRS160380/SRX099679/SRR566203/SRR566203.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01D	DNA	EFO	SRS160380	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR01A-1_1pA	SRX099679	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_6.bam	SRR566203	@dbgap@:reads/SRP012006/SRS160380/SRX099679/SRR566203/SRR566203.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-01A-01D	DNA	EFO	SRS160380	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR01A-1_1pA	SRX099679	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-01A-01D ING_WTSRG.PAKECR01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_6.bam	SRR566203	@dbgap@:reads/SRP012006/SRS160380/SRX099679/SRR566203/SRR566203.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-10A-01D	DNA	EFO	SRS160381	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-10A-01D ING_WTSRG.PAKECR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR10A-1_1pA	SRX099656	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-10A-01D ING_WTSRG.PAKECR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_7.bam	SRR566184	@dbgap@:reads/SRP012006/SRS160381/SRX099656/SRR566184/SRR566184.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-10A-01D	DNA	EFO	SRS160381	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-10A-01D ING_WTSRG.PAKECR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR10A-1_1pA	SRX099656	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-10A-01D ING_WTSRG.PAKECR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_7.bam	SRR566184	@dbgap@:reads/SRP012006/SRS160381/SRX099656/SRR566184/SRR566184.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-10A-01D	DNA	EFO	SRS160381	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-10A-01D ING_WTSRG.PAKECR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR10A-1_1pA	SRX099656	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-10A-01D ING_WTSRG.PAKECR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_7.bam	SRR566184	@dbgap@:reads/SRP012006/SRS160381/SRX099656/SRR566184/SRR566184.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-10A-01D	DNA	EFO	SRS160381	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-10A-01D ING_WTSRG.PAKECR10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR10A-1_1pA	SRX099656	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-10A-01D ING_WTSRG.PAKECR10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_7.bam	SRR566184	@dbgap@:reads/SRP012006/SRS160381/SRX099656/SRR566184/SRR566184.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-11A-01D	DNA	EFO	SRS160382	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-11A-01D ING_WTSRG.PAKECR11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR11A-1_1pA	SRX099680	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-11A-01D ING_WTSRG.PAKECR11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_8.bam	SRR566197	@dbgap@:reads/SRP012006/SRS160382/SRX099680/SRR566197/SRR566197.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-11A-01D	DNA	EFO	SRS160382	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-11A-01D ING_WTSRG.PAKECR11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR11A-1_1pA	SRX099680	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-11A-01D ING_WTSRG.PAKECR11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_8.bam	SRR566197	@dbgap@:reads/SRP012006/SRS160382/SRX099680/SRR566197/SRR566197.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKECR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKECR-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKECR-11A-01D	DNA	EFO	SRS160382	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKECR-11A-01D ING_WTSRG.PAKECR11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKECR11A-1_1pA	SRX099680	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKECR-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKECR-11A-01D ING_WTSRG.PAKECR11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110218_SN166_0168_B81JU0ABXX_8.bam	SRR566197	@dbgap@:reads/SRP012006/SRS160382/SRX099680/SRR566197/SRR566197.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01D	DNA	EFO	SRS190181	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKFYV-01A-01D PPTPWT.TARGET-50-PAKFYV-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	20.6	PPTPWT.TARGET-50-PAKFYV-01A-01D-1_1AMP	SRX398148	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKFYV-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKFYV-01A-01D PPTPWT.TARGET-50-PAKFYV-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID11.bam	SRR1057357	@dbgap@:reads/SRP012006/SRS190181/SRX398148/SRR1057357/SRR1057357.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01D	DNA	EFO	SRS190181	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKFYV-01A-01D PPTPWT.TARGET-50-PAKFYV-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	20.6	PPTPWT.TARGET-50-PAKFYV-01A-01D-1_1AMP	SRX398148	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKFYV-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKFYV-01A-01D PPTPWT.TARGET-50-PAKFYV-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID11.bam	SRR1057357	@dbgap@:reads/SRP012006/SRS190181/SRX398148/SRR1057357/SRR1057357.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01D	DNA	EFO	SRS190181	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKFYV-01A-01D PPTPWT.TARGET-50-PAKFYV-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	206	20.6	PPTPWT.TARGET-50-PAKFYV-01A-01D-1_1AMP	SRX398148	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKFYV-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKFYV-01A-01D PPTPWT.TARGET-50-PAKFYV-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID11.bam	SRR1057357	@dbgap@:reads/SRP012006/SRS190181/SRX398148/SRR1057357/SRR1057357.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-01A-01D	DNA	EFO	SRS190181	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKFYV-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKFYV-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKFYV-01A-01D	SRX959556	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKFYV-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKFYV-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKFYV-01A-01D run	sequencing assay	EFO	137	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKFYV-01A-01D.bam	SRR1919276	@dbgap@:reads/SRP012006/SRS190181/SRX959556/SRR1919276/SRR1919276.sra	2							
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-10A-01D	DNA	EFO	SRS190182	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKFYV-10A-01D PPTPWT.TARGET-50-PAKFYV-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAKFYV-10A-01D-1_1AMP	SRX398149	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKFYV-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKFYV-10A-01D PPTPWT.TARGET-50-PAKFYV-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID12.bam	SRR1057358	@dbgap@:reads/SRP012006/SRS190182/SRX398149/SRR1057358/SRR1057358.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-10A-01D	DNA	EFO	SRS190182	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKFYV-10A-01D PPTPWT.TARGET-50-PAKFYV-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAKFYV-10A-01D-1_1AMP	SRX398149	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKFYV-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKFYV-10A-01D PPTPWT.TARGET-50-PAKFYV-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID12.bam	SRR1057358	@dbgap@:reads/SRP012006/SRS190182/SRX398149/SRR1057358/SRR1057358.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-10A-01D	DNA	EFO	SRS190182	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKFYV-10A-01D PPTPWT.TARGET-50-PAKFYV-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	215	21.5	PPTPWT.TARGET-50-PAKFYV-10A-01D-1_1AMP	SRX398149	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKFYV-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKFYV-10A-01D PPTPWT.TARGET-50-PAKFYV-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130814_SN142_0780_BC294NACXX_4_ID12.bam	SRR1057358	@dbgap@:reads/SRP012006/SRS190182/SRX398149/SRR1057358/SRR1057358.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKFYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKFYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKFYV-10A-01D	DNA	EFO	SRS190182	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKFYV-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKFYV-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKFYV-10A-01D	SRX959561	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKFYV-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKFYV-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKFYV-10A-01D run	sequencing assay	EFO	138	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKFYV-10A-01D.bam	SRR1919281	@dbgap@:reads/SRP012006/SRS190182/SRX959561/SRR1919281/SRR1919281.sra	2							
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01D	DNA	EFO	SRS160383	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX01A-1_1pA	SRX099657	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_6.bam	SRR566190	@dbgap@:reads/SRP012006/SRS160383/SRX099657/SRR566190/SRR566190.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01D	DNA	EFO	SRS160383	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX01A-1_1pA	SRX099657	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_6.bam	SRR566190	@dbgap@:reads/SRP012006/SRS160383/SRX099657/SRR566190/SRR566190.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01D	DNA	EFO	SRS160383	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX01A-1_1pA	SRX099657	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_6.bam	SRR566190	@dbgap@:reads/SRP012006/SRS160383/SRX099657/SRR566190/SRR566190.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01D	DNA	EFO	SRS160383	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX01A-1_1pA	SRX099657	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_6.bam	SRR566190	@dbgap@:reads/SRP012006/SRS160383/SRX099657/SRR566190/SRR566190.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-01A-01D	DNA	EFO	SRS160383	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX01A-1_1pA	SRX099657	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-01A-01D ING_WTSRG.PAKGZX01A-1_1pA run	sequencing assay	EFO	100	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_6.bam	SRR566190	@dbgap@:reads/SRP012006/SRS160383/SRX099657/SRR566190/SRR566190.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-10A-01D	DNA	EFO	SRS160384	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX10A-1_1pA	SRX099669	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_7.bam	SRR566170	@dbgap@:reads/SRP012006/SRS160384/SRX099669/SRR566170/SRR566170.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-10A-01D	DNA	EFO	SRS160384	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX10A-1_1pA	SRX099669	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_7.bam	SRR566170	@dbgap@:reads/SRP012006/SRS160384/SRX099669/SRR566170/SRR566170.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-10A-01D	DNA	EFO	SRS160384	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX10A-1_1pA	SRX099669	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_7.bam	SRR566170	@dbgap@:reads/SRP012006/SRS160384/SRX099669/SRR566170/SRR566170.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-10A-01D	DNA	EFO	SRS160384	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX10A-1_1pA	SRX099669	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_7.bam	SRR566170	@dbgap@:reads/SRP012006/SRS160384/SRX099669/SRR566170/SRR566170.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKGZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKGZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKGZX-10A-01D	DNA	EFO	SRS160384	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKGZX10A-1_1pA	SRX099669	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKGZX-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKGZX-10A-01D ING_WTSRG.PAKGZX10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110208_SN601_0075_A81K6MABXX_7.bam	SRR566170	@dbgap@:reads/SRP012006/SRS160384/SRX099669/SRR566170/SRR566170.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01D	DNA	EFO	SRS160385	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS01A-1_1pA	SRX099670	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_2.bam	SRR566173	@dbgap@:reads/SRP012006/SRS160385/SRX099670/SRR566173/SRR566173.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01D	DNA	EFO	SRS160385	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS01A-1_1pA	SRX099670	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_2.bam	SRR566173	@dbgap@:reads/SRP012006/SRS160385/SRX099670/SRR566173/SRR566173.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01D	DNA	EFO	SRS160385	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS01A-1_1pA	SRX099670	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_2.bam	SRR566173	@dbgap@:reads/SRP012006/SRS160385/SRX099670/SRR566173/SRR566173.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01D	DNA	EFO	SRS160385	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS01A-1_1pA	SRX099670	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_2.bam	SRR566173	@dbgap@:reads/SRP012006/SRS160385/SRX099670/SRR566173/SRR566173.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-01A-01D	DNA	EFO	SRS160385	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS01A-1_1pA	SRX099670	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-01A-01D ING_WTSRG.PAKKNS01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_2.bam	SRR566173	@dbgap@:reads/SRP012006/SRS160385/SRX099670/SRR566173/SRR566173.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-10A-01D	DNA	EFO	SRS160386	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS10A-1_2pA	SRX099671	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110223_SN601_0078_B81JTVABXX_8.bam	SRR566180	@dbgap@:reads/SRP012006/SRS160386/SRX099671/SRR566180/SRR566180.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-10A-01D	DNA	EFO	SRS160386	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS10A-1_2pA	SRX099671	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110223_SN601_0078_B81JTVABXX_8.bam	SRR566180	@dbgap@:reads/SRP012006/SRS160386/SRX099671/SRR566180/SRR566180.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-10A-01D	DNA	EFO	SRS160386	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS10A-1_2pA	SRX099671	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110223_SN601_0078_B81JTVABXX_8.bam	SRR566180	@dbgap@:reads/SRP012006/SRS160386/SRX099671/SRR566180/SRR566180.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-10A-01D	DNA	EFO	SRS160386	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS10A-1_2pA	SRX099671	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110223_SN601_0078_B81JTVABXX_8.bam	SRR566180	@dbgap@:reads/SRP012006/SRS160386/SRX099671/SRR566180/SRR566180.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKKNS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKKNS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKKNS-10A-01D	DNA	EFO	SRS160386	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKKNS10A-1_2pA	SRX099671	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKKNS-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKKNS-10A-01D ING_WTSRG.PAKKNS10A-1_2pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110223_SN601_0078_B81JTVABXX_8.bam	SRR566180	@dbgap@:reads/SRP012006/SRS160386/SRX099671/SRR566180/SRR566180.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01D	DNA	EFO	SRS160387	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV01A-1_1pA	SRX099672	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_3.bam	SRR566174	@dbgap@:reads/SRP012006/SRS160387/SRX099672/SRR566174/SRR566174.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01D	DNA	EFO	SRS160387	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV01A-1_1pA	SRX099672	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_3.bam	SRR566174	@dbgap@:reads/SRP012006/SRS160387/SRX099672/SRR566174/SRR566174.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01D	DNA	EFO	SRS160387	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV01A-1_1pA	SRX099672	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_3.bam	SRR566174	@dbgap@:reads/SRP012006/SRS160387/SRX099672/SRR566174/SRR566174.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01D	DNA	EFO	SRS160387	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV01A-1_1pA	SRX099672	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_3.bam	SRR566174	@dbgap@:reads/SRP012006/SRS160387/SRX099672/SRR566174/SRR566174.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01D	DNA	EFO	SRS160387	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV01A-1_1pA	SRX099672	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_3.bam	SRR566174	@dbgap@:reads/SRP012006/SRS160387/SRX099672/SRR566174/SRR566174.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01D	DNA	EFO	SRS160387	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV01A-1_1pA	SRX099672	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-01A-01D ING_WTSRG.PAKMSV01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_3.bam	SRR566174	@dbgap@:reads/SRP012006/SRS160387/SRX099672/SRR566174/SRR566174.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-01A-01D	DNA	EFO	SRS160387	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKMSV-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKMSV-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKMSV-01A-01D	SRX959562	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKMSV-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKMSV-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKMSV-01A-01D run	sequencing assay	EFO	158	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKMSV-01A-01D.bam	SRR1919282	@dbgap@:reads/SRP012006/SRS160387/SRX959562/SRR1919282/SRR1919282.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-10A-01D	DNA	EFO	SRS160388	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV10A-1_1pA	SRX099658	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_1.bam	SRR566186	@dbgap@:reads/SRP012006/SRS160388/SRX099658/SRR566186/SRR566186.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-10A-01D	DNA	EFO	SRS160388	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV10A-1_1pA	SRX099658	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_1.bam	SRR566186	@dbgap@:reads/SRP012006/SRS160388/SRX099658/SRR566186/SRR566186.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-10A-01D	DNA	EFO	SRS160388	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV10A-1_1pA	SRX099658	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_1.bam	SRR566186	@dbgap@:reads/SRP012006/SRS160388/SRX099658/SRR566186/SRR566186.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-10A-01D	DNA	EFO	SRS160388	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV10A-1_1pA	SRX099658	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_1.bam	SRR566186	@dbgap@:reads/SRP012006/SRS160388/SRX099658/SRR566186/SRR566186.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-10A-01D	DNA	EFO	SRS160388	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV10A-1_1pA	SRX099658	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_1.bam	SRR566186	@dbgap@:reads/SRP012006/SRS160388/SRX099658/SRR566186/SRR566186.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-10A-01D	DNA	EFO	SRS160388	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKMSV10A-1_1pA	SRX099658	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKMSV-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKMSV-10A-01D ING_WTSRG.PAKMSV10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_1.bam	SRR566186	@dbgap@:reads/SRP012006/SRS160388/SRX099658/SRR566186/SRR566186.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKMSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKMSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKMSV-10A-01D	DNA	EFO	SRS160388	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKMSV-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKMSV-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKMSV-10A-01D	SRX959559	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKMSV-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKMSV-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKMSV-10A-01D run	sequencing assay	EFO	157	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKMSV-10A-01D.bam	SRR1919279	@dbgap@:reads/SRP012006/SRS160388/SRX959559/SRR1919279/SRR1919279.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01D	DNA	EFO	SRS190195	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKPDF-01A-01D PPTPWT.TARGET-50-PAKPDF-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAKPDF-01A-01D-1_1AMP	SRX398150	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKPDF-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKPDF-01A-01D PPTPWT.TARGET-50-PAKPDF-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID01.bam	SRR1057359	@dbgap@:reads/SRP012006/SRS190195/SRX398150/SRR1057359/SRR1057359.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01D	DNA	EFO	SRS190195	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKPDF-01A-01D PPTPWT.TARGET-50-PAKPDF-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAKPDF-01A-01D-1_1AMP	SRX398150	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKPDF-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKPDF-01A-01D PPTPWT.TARGET-50-PAKPDF-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID01.bam	SRR1057359	@dbgap@:reads/SRP012006/SRS190195/SRX398150/SRR1057359/SRR1057359.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01D	DNA	EFO	SRS190195	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKPDF-01A-01D PPTPWT.TARGET-50-PAKPDF-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAKPDF-01A-01D-1_1AMP	SRX398150	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKPDF-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKPDF-01A-01D PPTPWT.TARGET-50-PAKPDF-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID01.bam	SRR1057359	@dbgap@:reads/SRP012006/SRS190195/SRX398150/SRR1057359/SRR1057359.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-01A-01D	DNA	EFO	SRS190195	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKPDF-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKPDF-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKPDF-01A-01D	SRX959560	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKPDF-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKPDF-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKPDF-01A-01D run	sequencing assay	EFO	136	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKPDF-01A-01D.bam	SRR1919280	@dbgap@:reads/SRP012006/SRS190195/SRX959560/SRR1919280/SRR1919280.sra	2							
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-10A-01D	DNA	EFO	SRS190196	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKPDF-10A-01D PPTPWT.TARGET-50-PAKPDF-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PAKPDF-10A-01D-1_1AMP	SRX398151	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKPDF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKPDF-10A-01D PPTPWT.TARGET-50-PAKPDF-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID02.bam	SRR1057360	@dbgap@:reads/SRP012006/SRS190196/SRX398151/SRR1057360/SRR1057360.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-10A-01D	DNA	EFO	SRS190196	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKPDF-10A-01D PPTPWT.TARGET-50-PAKPDF-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PAKPDF-10A-01D-1_1AMP	SRX398151	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKPDF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKPDF-10A-01D PPTPWT.TARGET-50-PAKPDF-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID02.bam	SRR1057360	@dbgap@:reads/SRP012006/SRS190196/SRX398151/SRR1057360/SRR1057360.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-10A-01D	DNA	EFO	SRS190196	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKPDF-10A-01D PPTPWT.TARGET-50-PAKPDF-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PAKPDF-10A-01D-1_1AMP	SRX398151	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKPDF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKPDF-10A-01D PPTPWT.TARGET-50-PAKPDF-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID02.bam	SRR1057360	@dbgap@:reads/SRP012006/SRS190196/SRX398151/SRR1057360/SRR1057360.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKPDF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKPDF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKPDF-10A-01D	DNA	EFO	SRS190196	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKPDF-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKPDF-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKPDF-10A-01D	SRX959593	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKPDF-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKPDF-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKPDF-10A-01D run	sequencing assay	EFO	143	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKPDF-10A-01D.bam	SRR1919315	@dbgap@:reads/SRP012006/SRS190196/SRX959593/SRR1919315/SRR1919315.sra	2							
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02D	DNA	EFO	SRS190203	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKULH-01A-02D PPTPWT.TARGET-50-PAKULH-01A-02D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	20.8	PPTPWT.TARGET-50-PAKULH-01A-02D-1_1AMP	SRX398152	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKULH-01A-02D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKULH-01A-02D PPTPWT.TARGET-50-PAKULH-01A-02D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID03.bam	SRR1057361	@dbgap@:reads/SRP012006/SRS190203/SRX398152/SRR1057361/SRR1057361.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02D	DNA	EFO	SRS190203	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKULH-01A-02D PPTPWT.TARGET-50-PAKULH-01A-02D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	208	20.8	PPTPWT.TARGET-50-PAKULH-01A-02D-1_1AMP	SRX398152	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKULH-01A-02D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKULH-01A-02D PPTPWT.TARGET-50-PAKULH-01A-02D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID03.bam	SRR1057361	@dbgap@:reads/SRP012006/SRS190203/SRX398152/SRR1057361/SRR1057361.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-01A-02D	DNA	EFO	SRS190203	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKULH-01A-02D TAP_MID0015108.VAR_sA_TARGET-50-PAKULH-01A-02D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKULH-01A-02D	SRX959564	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKULH-01A-02D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKULH-01A-02D TAP_MID0015108.VAR_sA_TARGET-50-PAKULH-01A-02D run	sequencing assay	EFO	177	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKULH-01A-02D.bam	SRR1919284	@dbgap@:reads/SRP012006/SRS190203/SRX959564/SRR1919284/SRR1919284.sra	2							
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-10A-01D	DNA	EFO	SRS190204	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKULH-10A-01D PPTPWT.TARGET-50-PAKULH-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	20.9	PPTPWT.TARGET-50-PAKULH-10A-01D-1_1AMP	SRX398153	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKULH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKULH-10A-01D PPTPWT.TARGET-50-PAKULH-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID04.bam	SRR1057362	@dbgap@:reads/SRP012006/SRS190204/SRX398153/SRR1057362/SRR1057362.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-10A-01D	DNA	EFO	SRS190204	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKULH-10A-01D PPTPWT.TARGET-50-PAKULH-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	209	20.9	PPTPWT.TARGET-50-PAKULH-10A-01D-1_1AMP	SRX398153	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKULH-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKULH-10A-01D PPTPWT.TARGET-50-PAKULH-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130812_SN733_0424_AD2A70ACXX_4_ID04.bam	SRR1057362	@dbgap@:reads/SRP012006/SRS190204/SRX398153/SRR1057362/SRR1057362.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKULH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKULH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKULH-10A-01D	DNA	EFO	SRS190204	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKULH-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKULH-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKULH-10A-01D	SRX959565	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKULH-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKULH-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKULH-10A-01D run	sequencing assay	EFO	177	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKULH-10A-01D.bam	SRR1919286	@dbgap@:reads/SRP012006/SRS190204/SRX959565/SRR1919286/SRR1919286.sra	2							
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKVET-01A-01D ING_WTSRG.PAKVET01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKVET01A-1_1pA	SRX099681	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKVET-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKVET-01A-01D ING_WTSRG.PAKVET01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_2.bam	SRR566205	@dbgap@:reads/SRP012006/SRS160389/SRX099681/SRR566205/SRR566205.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKVET-01A-01D ING_WTSRG.PAKVET01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKVET01A-1_1pA	SRX099681	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKVET-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKVET-01A-01D ING_WTSRG.PAKVET01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_2.bam	SRR566205	@dbgap@:reads/SRP012006/SRS160389/SRX099681/SRR566205/SRR566205.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKVET-01A-01D ING_WTSRG.PAKVET01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKVET01A-1_1pA	SRX099681	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKVET-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKVET-01A-01D ING_WTSRG.PAKVET01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_2.bam	SRR566205	@dbgap@:reads/SRP012006/SRS160389/SRX099681/SRR566205/SRR566205.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKVET-01A-01D ING_WTSRG.PAKVET01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKVET01A-1_1pA	SRX099681	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKVET-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKVET-01A-01D ING_WTSRG.PAKVET01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_2.bam	SRR566205	@dbgap@:reads/SRP012006/SRS160389/SRX099681/SRR566205/SRR566205.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-01A-01D	DNA	EFO	SRS160389	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKVET-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKVET-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKVET-01A-01D	SRX959566	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKVET-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKVET-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKVET-01A-01D run	sequencing assay	EFO	146	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKVET-01A-01D.bam	SRR1919287	@dbgap@:reads/SRP012006/SRS160389/SRX959566/SRR1919287/SRR1919287.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKVET-11A-01D ING_WTSRG.PAKVET11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKVET11A-1_1pA	SRX099659	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKVET-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKVET-11A-01D ING_WTSRG.PAKVET11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_3.bam	SRR566187	@dbgap@:reads/SRP012006/SRS160390/SRX099659/SRR566187/SRR566187.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKVET-11A-01D ING_WTSRG.PAKVET11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKVET11A-1_1pA	SRX099659	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKVET-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKVET-11A-01D ING_WTSRG.PAKVET11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_3.bam	SRR566187	@dbgap@:reads/SRP012006/SRS160390/SRX099659/SRR566187/SRR566187.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKVET-11A-01D ING_WTSRG.PAKVET11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKVET11A-1_1pA	SRX099659	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKVET-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKVET-11A-01D ING_WTSRG.PAKVET11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_3.bam	SRR566187	@dbgap@:reads/SRP012006/SRS160390/SRX099659/SRR566187/SRR566187.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKVET-11A-01D ING_WTSRG.PAKVET11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKVET11A-1_1pA	SRX099659	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKVET-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKVET-11A-01D ING_WTSRG.PAKVET11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_3.bam	SRR566187	@dbgap@:reads/SRP012006/SRS160390/SRX099659/SRR566187/SRR566187.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKVET	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKVET-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKVET-11A-01D	DNA	EFO	SRS160390	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKVET-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKVET-11A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKVET-11A-01D	SRX959594	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKVET-11A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKVET-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKVET-11A-01D run	sequencing assay	EFO	147	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKVET-11A-01D.bam	SRR1919316	@dbgap@:reads/SRP012006/SRS160390/SRX959594/SRR1919316/SRR1919316.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01D	DNA	EFO	SRS160391	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB01A-1_1pA	SRX099682	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110428_SN601_0096_BB0B9RABXX_6.bam	SRR566199	@dbgap@:reads/SRP012006/SRS160391/SRX099682/SRR566199/SRR566199.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01D	DNA	EFO	SRS160391	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB01A-1_1pA	SRX099682	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110428_SN601_0096_BB0B9RABXX_6.bam	SRR566199	@dbgap@:reads/SRP012006/SRS160391/SRX099682/SRR566199/SRR566199.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01D	DNA	EFO	SRS160391	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB01A-1_1pA	SRX099682	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110428_SN601_0096_BB0B9RABXX_6.bam	SRR566199	@dbgap@:reads/SRP012006/SRS160391/SRX099682/SRR566199/SRR566199.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01D	DNA	EFO	SRS160391	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB01A-1_1pA	SRX099682	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110428_SN601_0096_BB0B9RABXX_6.bam	SRR566199	@dbgap@:reads/SRP012006/SRS160391/SRX099682/SRR566199/SRR566199.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01D	DNA	EFO	SRS160391	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB01A-1_1pA	SRX099682	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-01A-01D ING_WTSRG.PAKXWB01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110428_SN601_0096_BB0B9RABXX_6.bam	SRR566199	@dbgap@:reads/SRP012006/SRS160391/SRX099682/SRR566199/SRR566199.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-01A-01D	DNA	EFO	SRS160391	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKXWB-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKXWB-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKXWB-01A-01D	SRX959567	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKXWB-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKXWB-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKXWB-01A-01D run	sequencing assay	EFO	251	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKXWB-01A-01D.bam	SRR1919288	@dbgap@:reads/SRP012006/SRS160391/SRX959567/SRR1919288/SRR1919288.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-10A-01D	DNA	EFO	SRS160392	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB10A-1_1pA	SRX099692	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_2.bam	SRR566210	@dbgap@:reads/SRP012006/SRS160392/SRX099692/SRR566210/SRR566210.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-10A-01D	DNA	EFO	SRS160392	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB10A-1_1pA	SRX099692	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_2.bam	SRR566210	@dbgap@:reads/SRP012006/SRS160392/SRX099692/SRR566210/SRR566210.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-10A-01D	DNA	EFO	SRS160392	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB10A-1_1pA	SRX099692	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_2.bam	SRR566210	@dbgap@:reads/SRP012006/SRS160392/SRX099692/SRR566210/SRR566210.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-10A-01D	DNA	EFO	SRS160392	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB10A-1_1pA	SRX099692	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_2.bam	SRR566210	@dbgap@:reads/SRP012006/SRS160392/SRX099692/SRR566210/SRR566210.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-10A-01D	DNA	EFO	SRS160392	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PAKXWB10A-1_1pA	SRX099692	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXWB-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXWB-10A-01D ING_WTSRG.PAKXWB10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110318_SN142_0330_B702DBABXX_2.bam	SRR566210	@dbgap@:reads/SRP012006/SRS160392/SRX099692/SRR566210/SRR566210.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKXWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXWB-10A-01D	DNA	EFO	SRS160392	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKXWB-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKXWB-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKXWB-10A-01D	SRX959584	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKXWB-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKXWB-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKXWB-10A-01D run	sequencing assay	EFO	260	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKXWB-10A-01D.bam	SRR1919306	@dbgap@:reads/SRP012006/SRS160392/SRX959584/SRR1919306/SRR1919306.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01D	DNA	EFO	SRS160393	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXXF-01A-01D IWX_WTSRG.PAKXXF01A-2_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAKXXF01A-2_2pA	SRX147069	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXXF-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXXF-01A-01D IWX_WTSRG.PAKXXF01A-2_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID04_1.bam	SRR567928	@dbgap@:reads/SRP012006/SRS160393/SRX147069/SRR567928/SRR567928.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01D	DNA	EFO	SRS160393	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXXF-01A-01D IWX_WTSRG.PAKXXF01A-2_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAKXXF01A-2_2pA	SRX147069	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXXF-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXXF-01A-01D IWX_WTSRG.PAKXXF01A-2_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID04_1.bam	SRR567928	@dbgap@:reads/SRP012006/SRS160393/SRX147069/SRR567928/SRR567928.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01D	DNA	EFO	SRS160393	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXXF-01A-01D IWX_WTSRG.PAKXXF01A-2_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAKXXF01A-2_2pA	SRX147069	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXXF-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXXF-01A-01D IWX_WTSRG.PAKXXF01A-2_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID04_1.bam	SRR567928	@dbgap@:reads/SRP012006/SRS160393/SRX147069/SRR567928/SRR567928.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01D	DNA	EFO	SRS160393	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXXF-01A-01D IWX_WTSRG.PAKXXF01A-2_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAKXXF01A-2_2pA	SRX147069	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXXF-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXXF-01A-01D IWX_WTSRG.PAKXXF01A-2_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120212_SN898_0180_AD0NHLACXX_4_ID04_1.bam	SRR567928	@dbgap@:reads/SRP012006/SRS160393/SRX147069/SRR567928/SRR567928.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-01A-01D	DNA	EFO	SRS160393	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKXXF-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKXXF-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKXXF-01A-01D	SRX959587	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKXXF-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKXXF-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKXXF-01A-01D run	sequencing assay	EFO	134	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKXXF-01A-01D.bam	SRR1919309	@dbgap@:reads/SRP012006/SRS160393/SRX959587/SRR1919309/SRR1919309.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-10A-01D	DNA	EFO	SRS160394	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXXF-10A-01D IWX_WTSRG.PAKXXF10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAKXXF10A-1_2pA	SRX147057	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXXF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXXF-10A-01D IWX_WTSRG.PAKXXF10A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID10_1.bam	SRR567926	@dbgap@:reads/SRP012006/SRS160394/SRX147057/SRR567926/SRR567926.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-10A-01D	DNA	EFO	SRS160394	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXXF-10A-01D IWX_WTSRG.PAKXXF10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAKXXF10A-1_2pA	SRX147057	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXXF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXXF-10A-01D IWX_WTSRG.PAKXXF10A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID10_1.bam	SRR567926	@dbgap@:reads/SRP012006/SRS160394/SRX147057/SRR567926/SRR567926.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-10A-01D	DNA	EFO	SRS160394	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXXF-10A-01D IWX_WTSRG.PAKXXF10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAKXXF10A-1_2pA	SRX147057	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXXF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXXF-10A-01D IWX_WTSRG.PAKXXF10A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID10_1.bam	SRR567926	@dbgap@:reads/SRP012006/SRS160394/SRX147057/SRR567926/SRR567926.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-10A-01D	DNA	EFO	SRS160394	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKXXF-10A-01D IWX_WTSRG.PAKXXF10A-1_2pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	IWX_WTSRG.PAKXXF10A-1_2pA	SRX147057	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PAKXXF-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKXXF-10A-01D IWX_WTSRG.PAKXXF10A-1_2pA run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	120124_SN896_0174_BC0C4AACXX_4_ID10_1.bam	SRR567926	@dbgap@:reads/SRP012006/SRS160394/SRX147057/SRR567926/SRR567926.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKXXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKXXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKXXF-10A-01D	DNA	EFO	SRS160394	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKXXF-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKXXF-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKXXF-10A-01D	SRX959585	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKXXF-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKXXF-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKXXF-10A-01D run	sequencing assay	EFO	134	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKXXF-10A-01D.bam	SRR1919307	@dbgap@:reads/SRP012006/SRS160394/SRX959585/SRR1919307/SRR1919307.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01D	DNA	EFO	SRS190205	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKYLT-01A-01D PPTPWT.TARGET-50-PAKYLT-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	21	PPTPWT.TARGET-50-PAKYLT-01A-01D-1_1AMP	SRX398154	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKYLT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKYLT-01A-01D PPTPWT.TARGET-50-PAKYLT-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID05.bam	SRR1057363	@dbgap@:reads/SRP012006/SRS190205/SRX398154/SRR1057363/SRR1057363.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01D	DNA	EFO	SRS190205	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKYLT-01A-01D PPTPWT.TARGET-50-PAKYLT-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	21	PPTPWT.TARGET-50-PAKYLT-01A-01D-1_1AMP	SRX398154	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKYLT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKYLT-01A-01D PPTPWT.TARGET-50-PAKYLT-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID05.bam	SRR1057363	@dbgap@:reads/SRP012006/SRS190205/SRX398154/SRR1057363/SRR1057363.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01D	DNA	EFO	SRS190205	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKYLT-01A-01D PPTPWT.TARGET-50-PAKYLT-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	210	21	PPTPWT.TARGET-50-PAKYLT-01A-01D-1_1AMP	SRX398154	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKYLT-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKYLT-01A-01D PPTPWT.TARGET-50-PAKYLT-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID05.bam	SRR1057363	@dbgap@:reads/SRP012006/SRS190205/SRX398154/SRR1057363/SRR1057363.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-01A-01D	DNA	EFO	SRS190205	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKYLT-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKYLT-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKYLT-01A-01D	SRX959588	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKYLT-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKYLT-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKYLT-01A-01D run	sequencing assay	EFO	184	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKYLT-01A-01D.bam	SRR1919310	@dbgap@:reads/SRP012006/SRS190205/SRX959588/SRR1919310/SRR1919310.sra	2	GRCh37						
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-10A-01D	DNA	EFO	SRS190206	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKYLT-10A-01D PPTPWT.TARGET-50-PAKYLT-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAKYLT-10A-01D-1_1AMP	SRX398155	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKYLT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKYLT-10A-01D PPTPWT.TARGET-50-PAKYLT-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID06.bam	SRR1057364	@dbgap@:reads/SRP012006/SRS190206/SRX398155/SRR1057364/SRR1057364.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-10A-01D	DNA	EFO	SRS190206	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKYLT-10A-01D PPTPWT.TARGET-50-PAKYLT-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAKYLT-10A-01D-1_1AMP	SRX398155	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKYLT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKYLT-10A-01D PPTPWT.TARGET-50-PAKYLT-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID06.bam	SRR1057364	@dbgap@:reads/SRP012006/SRS190206/SRX398155/SRR1057364/SRR1057364.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-10A-01D	DNA	EFO	SRS190206	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PAKYLT-10A-01D PPTPWT.TARGET-50-PAKYLT-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PAKYLT-10A-01D-1_1AMP	SRX398155	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PAKYLT-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PAKYLT-10A-01D PPTPWT.TARGET-50-PAKYLT-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID06.bam	SRR1057364	@dbgap@:reads/SRP012006/SRS190206/SRX398155/SRR1057364/SRR1057364.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PAKYLT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PAKYLT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PAKYLT-10A-01D	DNA	EFO	SRS190206	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PAKYLT-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKYLT-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PAKYLT-10A-01D	SRX959586	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PAKYLT-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PAKYLT-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PAKYLT-10A-01D run	sequencing assay	EFO	188	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PAKYLT-10A-01D.bam	SRR1919308	@dbgap@:reads/SRP012006/SRS190206/SRX959586/SRR1919308/SRR1919308.sra	2	GRCh37						
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01D	DNA	EFO	SRS190209	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALDTE-01A-01D PPTPWT.TARGET-50-PALDTE-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PALDTE-01A-01D-1_1AMP	SRX398156	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALDTE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALDTE-01A-01D PPTPWT.TARGET-50-PALDTE-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID07.bam	SRR1057365	@dbgap@:reads/SRP012006/SRS190209/SRX398156/SRR1057365/SRR1057365.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01D	DNA	EFO	SRS190209	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALDTE-01A-01D PPTPWT.TARGET-50-PALDTE-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PALDTE-01A-01D-1_1AMP	SRX398156	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALDTE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALDTE-01A-01D PPTPWT.TARGET-50-PALDTE-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID07.bam	SRR1057365	@dbgap@:reads/SRP012006/SRS190209/SRX398156/SRR1057365/SRR1057365.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01D	DNA	EFO	SRS190209	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALDTE-01A-01D PPTPWT.TARGET-50-PALDTE-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PALDTE-01A-01D-1_1AMP	SRX398156	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALDTE-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALDTE-01A-01D PPTPWT.TARGET-50-PALDTE-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID07.bam	SRR1057365	@dbgap@:reads/SRP012006/SRS190209/SRX398156/SRR1057365/SRR1057365.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-01A-01D	DNA	EFO	SRS190209	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALDTE-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALDTE-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALDTE-01A-01D	SRX959589	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALDTE-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALDTE-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALDTE-01A-01D run	sequencing assay	EFO	186	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALDTE-01A-01D.bam	SRR1919311	@dbgap@:reads/SRP012006/SRS190209/SRX959589/SRR1919311/SRR1919311.sra	2	GRCh37						
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-10A-01D	DNA	EFO	SRS190210	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALDTE-10A-01D PPTPWT.TARGET-50-PALDTE-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PALDTE-10A-01D-1_1AMP	SRX398157	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALDTE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALDTE-10A-01D PPTPWT.TARGET-50-PALDTE-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID08.bam	SRR1057366	@dbgap@:reads/SRP012006/SRS190210/SRX398157/SRR1057366/SRR1057366.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-10A-01D	DNA	EFO	SRS190210	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALDTE-10A-01D PPTPWT.TARGET-50-PALDTE-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PALDTE-10A-01D-1_1AMP	SRX398157	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALDTE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALDTE-10A-01D PPTPWT.TARGET-50-PALDTE-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID08.bam	SRR1057366	@dbgap@:reads/SRP012006/SRS190210/SRX398157/SRR1057366/SRR1057366.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-10A-01D	DNA	EFO	SRS190210	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALDTE-10A-01D PPTPWT.TARGET-50-PALDTE-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	212	21.2	PPTPWT.TARGET-50-PALDTE-10A-01D-1_1AMP	SRX398157	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALDTE-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALDTE-10A-01D PPTPWT.TARGET-50-PALDTE-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130809_SN821_0410_BC28FUACXX_5_ID08.bam	SRR1057366	@dbgap@:reads/SRP012006/SRS190210/SRX398157/SRR1057366/SRR1057366.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALDTE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALDTE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALDTE-10A-01D	DNA	EFO	SRS190210	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALDTE-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALDTE-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALDTE-10A-01D	SRX959591	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALDTE-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALDTE-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALDTE-10A-01D run	sequencing assay	EFO	175	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALDTE-10A-01D.bam	SRR1919313	@dbgap@:reads/SRP012006/SRS190210/SRX959591/SRR1919313/SRR1919313.sra	2	GRCh37						
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01D	DNA	EFO	SRS160395	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-01A-01D ING_WTSRG.PALFME01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME01A-1_1pA	SRX099683	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-01A-01D ING_WTSRG.PALFME01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_3.bam	SRR566211	@dbgap@:reads/SRP012006/SRS160395/SRX099683/SRR566211/SRR566211.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01D	DNA	EFO	SRS160395	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-01A-01D ING_WTSRG.PALFME01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME01A-1_1pA	SRX099683	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-01A-01D ING_WTSRG.PALFME01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_3.bam	SRR566211	@dbgap@:reads/SRP012006/SRS160395/SRX099683/SRR566211/SRR566211.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01D	DNA	EFO	SRS160395	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-01A-01D ING_WTSRG.PALFME01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME01A-1_1pA	SRX099683	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-01A-01D ING_WTSRG.PALFME01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_3.bam	SRR566211	@dbgap@:reads/SRP012006/SRS160395/SRX099683/SRR566211/SRR566211.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01D	DNA	EFO	SRS160395	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-01A-01D ING_WTSRG.PALFME01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME01A-1_1pA	SRX099683	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-01A-01D ING_WTSRG.PALFME01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_3.bam	SRR566211	@dbgap@:reads/SRP012006/SRS160395/SRX099683/SRR566211/SRR566211.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-01A-01D	DNA	EFO	SRS160395	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALFME-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALFME-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALFME-01A-01D	SRX959601	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALFME-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALFME-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALFME-01A-01D run	sequencing assay	EFO	156	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALFME-01A-01D.bam	SRR1919322	@dbgap@:reads/SRP012006/SRS160395/SRX959601/SRR1919322/SRR1919322.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01D	DNA	EFO	SRS160396	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-02A-01D ING_WTSRG.PALFME02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME02A-1_1pA	SRX099684	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-02A-01D ING_WTSRG.PALFME02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_4.bam	SRR566212	@dbgap@:reads/SRP012006/SRS160396/SRX099684/SRR566212/SRR566212.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01D	DNA	EFO	SRS160396	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-02A-01D ING_WTSRG.PALFME02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME02A-1_1pA	SRX099684	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-02A-01D ING_WTSRG.PALFME02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_4.bam	SRR566212	@dbgap@:reads/SRP012006/SRS160396/SRX099684/SRR566212/SRR566212.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01D	DNA	EFO	SRS160396	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-02A-01D ING_WTSRG.PALFME02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME02A-1_1pA	SRX099684	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-02A-01D ING_WTSRG.PALFME02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_4.bam	SRR566212	@dbgap@:reads/SRP012006/SRS160396/SRX099684/SRR566212/SRR566212.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01D	DNA	EFO	SRS160396	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-02A-01D ING_WTSRG.PALFME02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME02A-1_1pA	SRX099684	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-02A-01D ING_WTSRG.PALFME02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110228_SN142_0325_B81KK7ABXX_4.bam	SRR566212	@dbgap@:reads/SRP012006/SRS160396/SRX099684/SRR566212/SRR566212.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-02A-01D	DNA	EFO	SRS160396	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALFME-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALFME-02A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALFME-02A-01D	SRX959590	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALFME-02A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALFME-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALFME-02A-01D run	sequencing assay	EFO	143	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALFME-02A-01D.bam	SRR1919312	@dbgap@:reads/SRP012006/SRS160396/SRX959590/SRR1919312/SRR1919312.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-11A-01D	DNA	EFO	SRS160397	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME11A-1_1pA	SRX099685	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_1.bam	SRR566213	@dbgap@:reads/SRP012006/SRS160397/SRX099685/SRR566213/SRR566213.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-11A-01D	DNA	EFO	SRS160397	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME11A-1_1pA	SRX099685	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_1.bam	SRR566213	@dbgap@:reads/SRP012006/SRS160397/SRX099685/SRR566213/SRR566213.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-11A-01D	DNA	EFO	SRS160397	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME11A-1_1pA	SRX099685	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_1.bam	SRR566213	@dbgap@:reads/SRP012006/SRS160397/SRX099685/SRR566213/SRR566213.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-11A-01D	DNA	EFO	SRS160397	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME11A-1_1pA	SRX099685	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_1.bam	SRR566213	@dbgap@:reads/SRP012006/SRS160397/SRX099685/SRR566213/SRR566213.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-11A-01D	DNA	EFO	SRS160397	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALFME11A-1_1pA	SRX099685	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALFME-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALFME-11A-01D ING_WTSRG.PALFME11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_1.bam	SRR566213	@dbgap@:reads/SRP012006/SRS160397/SRX099685/SRR566213/SRR566213.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALFME	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALFME-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALFME-11A-01D	DNA	EFO	SRS160397	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALFME-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALFME-11A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALFME-11A-01D	SRX959596	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALFME-11A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALFME-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALFME-11A-01D run	sequencing assay	EFO	141	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALFME-11A-01D.bam	SRR1919317	@dbgap@:reads/SRP012006/SRS160397/SRX959596/SRR1919317/SRR1919317.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01D	DNA	EFO	SRS160398	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU01A-1_1pA	SRX099686	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_6.bam	SRR566198	@dbgap@:reads/SRP012006/SRS160398/SRX099686/SRR566198/SRR566198.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01D	DNA	EFO	SRS160398	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU01A-1_1pA	SRX099686	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_6.bam	SRR566198	@dbgap@:reads/SRP012006/SRS160398/SRX099686/SRR566198/SRR566198.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01D	DNA	EFO	SRS160398	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU01A-1_1pA	SRX099686	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_6.bam	SRR566198	@dbgap@:reads/SRP012006/SRS160398/SRX099686/SRR566198/SRR566198.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01D	DNA	EFO	SRS160398	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU01A-1_1pA	SRX099686	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_6.bam	SRR566198	@dbgap@:reads/SRP012006/SRS160398/SRX099686/SRR566198/SRR566198.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01D	DNA	EFO	SRS160398	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU01A-1_1pA	SRX099686	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_6.bam	SRR566198	@dbgap@:reads/SRP012006/SRS160398/SRX099686/SRR566198/SRR566198.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01D	DNA	EFO	SRS160398	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU01A-1_1pA	SRX099686	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-01A-01D ING_WTSRG.PALGLU01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_6.bam	SRR566198	@dbgap@:reads/SRP012006/SRS160398/SRX099686/SRR566198/SRR566198.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-01A-01D	DNA	EFO	SRS160398	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALGLU-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALGLU-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALGLU-01A-01D	SRX959592	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALGLU-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALGLU-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALGLU-01A-01D run	sequencing assay	EFO	139	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALGLU-01A-01D.bam	SRR1919314	@dbgap@:reads/SRP012006/SRS160398/SRX959592/SRR1919314/SRR1919314.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-10A-01D	DNA	EFO	SRS160399	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU10A-1_1pA	SRX099652	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_7.bam	SRR566191	@dbgap@:reads/SRP012006/SRS160399/SRX099652/SRR566191/SRR566191.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-hg19-germline.mafplus.txt	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-10A-01D	DNA	EFO	SRS160399	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU10A-1_1pA	SRX099652	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_7.bam	SRR566191	@dbgap@:reads/SRP012006/SRS160399/SRX099652/SRR566191/SRR566191.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-10A-01D	DNA	EFO	SRS160399	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU10A-1_1pA	SRX099652	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_7.bam	SRR566191	@dbgap@:reads/SRP012006/SRS160399/SRX099652/SRR566191/SRR566191.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-10A-01D	DNA	EFO	SRS160399	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU10A-1_1pA	SRX099652	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_7.bam	SRR566191	@dbgap@:reads/SRP012006/SRS160399/SRX099652/SRR566191/SRR566191.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-pilot-nci-somatic-v4.0.mafplus.xlsx	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-pilot-nci-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-10A-01D	DNA	EFO	SRS160399	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU10A-1_1pA	SRX099652	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_7.bam	SRR566191	@dbgap@:reads/SRP012006/SRS160399/SRX099652/SRR566191/SRR566191.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-10A-01D	DNA	EFO	SRS160399	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALGLU10A-1_1pA	SRX099652	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALGLU-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALGLU-10A-01D ING_WTSRG.PALGLU10A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110209_SN142_0321_B81D8TABXX_7.bam	SRR566191	@dbgap@:reads/SRP012006/SRS160399/SRX099652/SRR566191/SRR566191.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALGLU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALGLU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALGLU-10A-01D	DNA	EFO	SRS160399	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALGLU-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALGLU-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALGLU-10A-01D	SRX959597	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALGLU-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALGLU-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALGLU-10A-01D run	sequencing assay	EFO	139	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALGLU-10A-01D.bam	SRR1919318	@dbgap@:reads/SRP012006/SRS160399/SRX959597/SRR1919318/SRR1919318.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01D	DNA	EFO	SRS160400	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-01A-01D ING_WTSRG.PALJIP01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP01A-1_1pA	SRX099675	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-01A-01D ING_WTSRG.PALJIP01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_2.bam	SRR566201	@dbgap@:reads/SRP012006/SRS160400/SRX099675/SRR566201/SRR566201.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01D	DNA	EFO	SRS160400	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-01A-01D ING_WTSRG.PALJIP01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP01A-1_1pA	SRX099675	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-01A-01D ING_WTSRG.PALJIP01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_2.bam	SRR566201	@dbgap@:reads/SRP012006/SRS160400/SRX099675/SRR566201/SRR566201.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01D	DNA	EFO	SRS160400	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-01A-01D ING_WTSRG.PALJIP01A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP01A-1_1pA	SRX099675	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-01A-01D ING_WTSRG.PALJIP01A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_2.bam	SRR566201	@dbgap@:reads/SRP012006/SRS160400/SRX099675/SRR566201/SRR566201.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-01A-01D	DNA	EFO	SRS160400	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALJIP-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALJIP-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALJIP-01A-01D	SRX959598	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALJIP-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALJIP-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALJIP-01A-01D run	sequencing assay	EFO	138	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALJIP-01A-01D.bam	SRR1919319	@dbgap@:reads/SRP012006/SRS160400/SRX959598/SRR1919319/SRR1919319.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01D	DNA	EFO	SRS160401	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-02A-01D ING_WTSRG.PALJIP02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP02A-1_1pA	SRX099653	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-02A-01D ING_WTSRG.PALJIP02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_3.bam	SRR566188	@dbgap@:reads/SRP012006/SRS160401/SRX099653/SRR566188/SRR566188.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01D	DNA	EFO	SRS160401	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-02A-01D ING_WTSRG.PALJIP02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP02A-1_1pA	SRX099653	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-02A-01D ING_WTSRG.PALJIP02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_3.bam	SRR566188	@dbgap@:reads/SRP012006/SRS160401/SRX099653/SRR566188/SRR566188.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01D	DNA	EFO	SRS160401	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-02A-01D ING_WTSRG.PALJIP02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP02A-1_1pA	SRX099653	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-02A-01D ING_WTSRG.PALJIP02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_3.bam	SRR566188	@dbgap@:reads/SRP012006/SRS160401/SRX099653/SRR566188/SRR566188.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01D	DNA	EFO	SRS160401	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-02A-01D ING_WTSRG.PALJIP02A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP02A-1_1pA	SRX099653	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-02A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-02A-01D ING_WTSRG.PALJIP02A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_3.bam	SRR566188	@dbgap@:reads/SRP012006/SRS160401/SRX099653/SRR566188/SRR566188.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-02A	organism part	EFO	Solid Tumor	NCIt	"Recurrent Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-02A-01D	DNA	EFO	SRS160401	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALJIP-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALJIP-02A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALJIP-02A-01D	SRX959599	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALJIP-02A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALJIP-02A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALJIP-02A-01D run	sequencing assay	EFO	137	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALJIP-02A-01D.bam	SRR1919320	@dbgap@:reads/SRP012006/SRS160401/SRX959599/SRR1919320/SRR1919320.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-11A-01D	DNA	EFO	SRS160402	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP11A-1_1pA	SRX099676	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_4.bam	SRR566164	@dbgap@:reads/SRP012006/SRS160402/SRX099676/SRR566164/SRR566164.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:WXS-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-11A-01D	DNA	EFO	SRS160402	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP11A-1_1pA	SRX099676	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_4.bam	SRR566164	@dbgap@:reads/SRP012006/SRS160402/SRX099676/SRR566164/SRR566164.sra	2	GRCh37-lite	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-snp-indel.mafplus.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-11A-01D	DNA	EFO	SRS160402	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP11A-1_1pA	SRX099676	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_4.bam	SRR566164	@dbgap@:reads/SRP012006/SRS160402/SRX099676/SRR566164/SRR566164.sra	2	GRCh37-lite	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-primary-recurrent-NCI-somatic-exonic.bcmmaf.txt	3	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-FilterVerified:01	target-wt-primary-recurrent-NCI-somatic-exonic-verified.bcmmaf.txt	3
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-11A-01D	DNA	EFO	SRS160402	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP11A-1_1pA	SRX099676	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_4.bam	SRR566164	@dbgap@:reads/SRP012006/SRS160402/SRX099676/SRR566164/SRR566164.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-11A-01D	DNA	EFO	SRS160402	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA library	PAIRED	GENOMIC	WXS	Hybrid Selection	200	20	ING_WTSRG.PALJIP11A-1_1pA	SRX099676	"Whole Exome Sequencing of TARGET-Wilms sample TARGET-50-PALJIP-11A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALJIP-11A-01D ING_WTSRG.PALJIP11A-1_1pA run	sequencing assay	EFO	200	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.7	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bfast 0.6.4d;picard tools 1.41;raw bam read validator 1.0	110222_SN580_0050_A81JM5ABXX_4.bam	SRR566164	@dbgap@:reads/SRP012006/SRS160402/SRX099676/SRR566164/SRR566164.sra	2	GRCh37-lite	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Relapse_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALJIP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALJIP-11A	organism part	EFO	Normal Tissue	NCIt	"Solid Tissue Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALJIP-11A-01D	DNA	EFO	SRS160402	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALJIP-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALJIP-11A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALJIP-11A-01D	SRX959600	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALJIP-11A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALJIP-11A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALJIP-11A-01D run	sequencing assay	EFO	140	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALJIP-11A-01D.bam	SRR1919321	@dbgap@:reads/SRP012006/SRS160402/SRX959600/SRR1919321/SRR1919321.sra	2		bcm.edu:Protocol:TargetedCapture-VariantCall-AtlasPindel:01	target-wt-pilot-bcm-somatic-v4.0.mafplus.xlsx	3	bcm.edu:Protocol:TargetedCapture-FilterVerified:01	target-wt-pilot-bcm-somatic-verified-v4.0.mafplus.xlsx	3
TARGET-50-PALLCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLCK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCK-01A-01D	DNA	EFO	SRS190219	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALLCK-01A-01D PPTPWT.TARGET-50-PALLCK-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	21.1	PPTPWT.TARGET-50-PALLCK-01A-01D-1_1AMP	SRX398158	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALLCK-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALLCK-01A-01D PPTPWT.TARGET-50-PALLCK-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130817_SN738_0416_BC298AACXX_8_ID09.bam	SRR1057367	@dbgap@:reads/SRP012006/SRS190219/SRX398158/SRR1057367/SRR1057367.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PALLCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLCK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCK-01A-01D	DNA	EFO	SRS190219	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALLCK-01A-01D PPTPWT.TARGET-50-PALLCK-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	21.1	PPTPWT.TARGET-50-PALLCK-01A-01D-1_1AMP	SRX398158	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALLCK-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALLCK-01A-01D PPTPWT.TARGET-50-PALLCK-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130817_SN738_0416_BC298AACXX_8_ID09.bam	SRR1057367	@dbgap@:reads/SRP012006/SRS190219/SRX398158/SRR1057367/SRR1057367.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PALLCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLCK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCK-01A-01D	DNA	EFO	SRS190219	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALLCK-01A-01D PPTPWT.TARGET-50-PALLCK-01A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	211	21.1	PPTPWT.TARGET-50-PALLCK-01A-01D-1_1AMP	SRX398158	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALLCK-01A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALLCK-01A-01D PPTPWT.TARGET-50-PALLCK-01A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130817_SN738_0416_BC298AACXX_8_ID09.bam	SRR1057367	@dbgap@:reads/SRP012006/SRS190219/SRX398158/SRR1057367/SRR1057367.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALLCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLCK-01A	organism part	EFO	Solid Tumor	NCIt	"Primary Solid Tumor"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCK-01A-01D	DNA	EFO	SRS190219	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALLCK-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALLCK-01A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALLCK-01A-01D	SRX959603	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALLCK-01A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALLCK-01A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALLCK-01A-01D run	sequencing assay	EFO	214	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALLCK-01A-01D.bam	SRR1919324	@dbgap@:reads/SRP012006/SRS190219/SRX959603/SRR1919324/SRR1919324.sra	2							
TARGET-50-PALLCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLCK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCK-10A-01D	DNA	EFO	SRS190220	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALLCK-10A-01D PPTPWT.TARGET-50-PALLCK-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PALLCK-10A-01D-1_1AMP	SRX398159	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALLCK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALLCK-10A-01D PPTPWT.TARGET-50-PALLCK-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130817_SN738_0416_BC298AACXX_8_ID10.bam	SRR1057368	@dbgap@:reads/SRP012006/SRS190220/SRX398159/SRR1057368/SRR1057368.sra	2	GRCh37	bcm.edu:Protocol:WXS-VariantCall-AtlasPindel:01	target-wt-17pairs-somatic-v1.1.mafplus.xlsx	3			
TARGET-50-PALLCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLCK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCK-10A-01D	DNA	EFO	SRS190220	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALLCK-10A-01D PPTPWT.TARGET-50-PALLCK-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PALLCK-10A-01D-1_1AMP	SRX398159	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALLCK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALLCK-10A-01D PPTPWT.TARGET-50-PALLCK-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130817_SN738_0416_BC298AACXX_8_ID10.bam	SRR1057368	@dbgap@:reads/SRP012006/SRS190220/SRX398159/SRR1057368/SRR1057368.sra	2	GRCh37	nci.nih.gov:CBIIT.Meerzaman.Protocol:WXS-VariantCall:01	target-wt-17pairs-NCI-somatic-exonic.bcmmaf.txt	3			
TARGET-50-PALLCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLCK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCK-10A-01D	DNA	EFO	SRS190220	bcm.edu:Protocol:WXS-LibraryPrep-Illumina:01	bcm.edu:Protocol:WXS-ExomeCapture-NimbleGen-SeqCapEZHumanExomeV2:01	Baylor College of Medicine	TARGET-50-PALLCK-10A-01D PPTPWT.TARGET-50-PALLCK-10A-01D-1_1AMP library	PAIRED	GENOMIC	WXS	Hybrid Selection	213	21.3	PPTPWT.TARGET-50-PALLCK-10A-01D-1_1AMP	SRX398159	"Whole Exome Sequencing of TARGET Wilms tumor sample TARGET-50-PALLCK-10A-01D by Hybrid Selection"	bcm.edu:Protocol:WXS-Sequence-Illumina-HiSeq2000:01	BCM	TARGET-50-PALLCK-10A-01D PPTPWT.TARGET-50-PALLCK-10A-01D-1_1AMP run	sequencing assay	EFO	202	bcm.edu:Protocol:WXS-BaseCall-Illumina:01	Casava V1.8.3_V3.2	bcm.edu:Protocol:WXS-ReadAlign-BWA-GATK:01	bwa 0.5.9;MateInfoFixer 1.0;picard 1.51;samtools 0.1.7(r510);GATk 2.5-2-gf57256b;picard 1.84	130817_SN738_0416_BC298AACXX_8_ID10.bam	SRR1057368	@dbgap@:reads/SRP012006/SRS190220/SRX398159/SRR1057368/SRR1057368.sra	2	GRCh37	stjude.org:Protocol:WXS-VariantCall-Bambino-DToxoG:01	stjude.org_TARGET_WT_WXS_Diagnosis_IlluminaHiSeq_somatic.maf.txt	3			
TARGET-50-PALLCK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood Kidney Wilms Tumor	NCIt	Discovery		TARGET-50-PALLCK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-AllPrep:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-50-PALLCK-10A-01D	DNA	EFO	SRS190220	bcm.edu:Protocol:TargetedCapture-LibraryPrep-IonTorrent:01		Baylor College of Medicine	TARGET-50-PALLCK-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALLCK-10A-01D library	SINGLE	GENOMIC	Targeted-Capture	PCR			TAP_MID0015108.VAR_sA_TARGET-50-PALLCK-10A-01D	SRX959602	"Validation of PPTP TARGET Wilms Tumor sample TARGET-50-PALLCK-10A-01D"	bcm.edu:Protocol:TargetedCapture-Sequence-IonTorrent-IonPGM:01	BCM	TARGET-50-PALLCK-10A-01D TAP_MID0015108.VAR_sA_TARGET-50-PALLCK-10A-01D run	sequencing assay	EFO	204	bcm.edu:Protocol:TargetedCapture-BaseCall-IonTorrent:01	Torrent Suite 3.2	bcm.edu:Protocol:TargetedCapture-ReadAlign-BLAT-CrossMatch:01	blat 33;cross_match 1.080812;crossmatch2SAM 1.0;samtools 0.1.8;picard 1.86	R_2014_03_12_13_38_12_user_P01-232-PPTP_TARGET-50-PALLCK-10A-01D.bam	SRR1919323	@dbgap@:reads/SRP012006/SRS190220/SRX959602/SRR1919323/SRR1919323.sra	2							
